RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9097
(152 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 132 bits (334), Expect = 3e-37
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
+V T +G + G+ +N L V F G+PYA+ P G RF PP P W D++ A +F
Sbjct: 12 LVTTNFGKIRGIKKELNNEILGPVIQFLGVPYAAPPTGEHRFQPPEPPSPWSDIRNATQF 71
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
APVCPQ+ G L+++ Y+++QSEDCLYLNIY P
Sbjct: 72 APVCPQNIIDGRLPE--------VMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVP 119
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 118 bits (298), Expect = 3e-32
Identities = 38/122 (31%), Positives = 51/122 (41%), Gaps = 20/122 (16%)
Query: 20 DYIAPRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDV 79
D + +V TK G V G + + + + F GIP+A PVGN+RF P + W V
Sbjct: 1 DDHSELLVNTKSGKVMGTRVPVLSSH---ISAFLGIPFAEPPVGNMRFRRPEPKKPWSGV 57
Query: 80 KPAHKFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIY 139
A + C Q G + +M P R SEDCLYLNI+
Sbjct: 58 WNASTYPNNCQQYVDEQFPGFS---------GSEMWNPN--------REMSEDCLYLNIW 100
Query: 140 SP 141
P
Sbjct: 101 VP 102
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 118 bits (297), Expect = 4e-32
Identities = 39/119 (32%), Positives = 49/119 (41%), Gaps = 20/119 (16%)
Query: 23 APRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPA 82
+VR + G + G+ + A V F GIP+A PVG+ RFMPP W V A
Sbjct: 6 PQLLVRVRGGQLRGIRLKAPGGP---VSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDA 62
Query: 83 HKFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
F VC Q G G P R SEDCLYLN+++P
Sbjct: 63 TTFQNVCYQY-VDTLYPGFEGTEMWNPN----------------RELSEDCLYLNVWTP 104
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 118 bits (297), Expect = 5e-32
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 23 APRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPA 82
+P +V T +G V G ++ + + V +F GIP+A P+G LRF PP E W VK A
Sbjct: 4 SPPVVDTVHGKVLGKFVSLEG-FAQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVKNA 62
Query: 83 HKFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
+ P+C QD + + + SEDCLYLNIY+P
Sbjct: 63 TSYPPMCTQD---------------PKAGQLLSELFTNRKENIPLKLSEDCLYLNIYTP 106
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 115 bits (290), Expect = 4e-31
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 20/116 (17%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
I+ TK G V G+ + V F GIPYA P+G LRF P + W D+ A K+
Sbjct: 5 IIATKNGKVRGMQLTVFGGT---VTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKY 61
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
A C Q + + + SEDCLYLN++ P
Sbjct: 62 ANSCCQ-----------------NIDQSFPGFHGSEMWNPNTDLSEDCLYLNVWIP 100
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 112 bits (282), Expect = 4e-30
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 24 PRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAH 83
+IV T+YG V G + V ++GIPYA PVG RF P PE W+DV A
Sbjct: 3 HQIVTTQYGKVKG-------TTENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDAT 55
Query: 84 KFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
+ P+CPQ + L QSEDCLY+N+++P
Sbjct: 56 AYGPICPQPSDLLSLSY-----------------------TELPRQSEDCLYVNVFAP 90
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 110 bits (278), Expect = 2e-29
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 28/116 (24%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
+V T+YG + G + + V V++GIPYA APVG RF+PP P+ W V+ A F
Sbjct: 5 VVETRYGRLRGEM-------NEGVFVWKGIPYAKAPVGERRFLPPEPPDAWDGVREATSF 57
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
PV Q +L SED LYLNI+SP
Sbjct: 58 GPVVMQP---------------------SDPIFSGLLGRMSEAPSEDGLYLNIWSP 92
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 110 bits (278), Expect = 2e-29
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 APRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPA 82
AP V +SGV V+ F+GIP+A P+ +LRF P A
Sbjct: 2 APTAVLNGNEVISGV-------LEGKVDTFKGIPFADPPLNDLRFKHPQPFTGSYQGLKA 54
Query: 83 HKFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
+ F+P C Q + A + + L + + +EDCLYLN++ P
Sbjct: 55 NDFSPACMQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRP 113
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 111 bits (278), Expect = 2e-29
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 24 PRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAH 83
+V+T G V G + R V V+ GIPYA PV +LRF P E W V A
Sbjct: 4 RLVVQTSSGPVRGRSVTVQGRE---VHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDAT 60
Query: 84 KFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
+ C Q+ G + E++ P + SEDCLY+N+++P
Sbjct: 61 GLSATCVQERYEYFPGFS---------GEEIWNPNTNV--------SEDCLYINVWAP 101
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 105 bits (265), Expect = 1e-27
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 14/119 (11%)
Query: 23 APRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPA 82
AP + GD + E F GIP+A PVGNLRF P + +
Sbjct: 1 AP-TAKLANGDTITGLNAII------NEAFLGIPFAEPPVGNLRFKDPVPYSGSLNGQKF 53
Query: 83 HKFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
+ P C Q G +G A + + QSEDCL +N+ P
Sbjct: 54 TSYGPSCMQQNPEGTFEENLGKTALDLVMQSKVFQAVL-------PQSEDCLTINVVRP 105
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 103 bits (259), Expect = 7e-27
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 34/116 (29%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
++ Y GV + A V+ F G+ YAS P+G+LRF P P + ++ A ++
Sbjct: 12 VINLGYARYQGVRLEAG------VDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATEY 65
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
P+C + G + SEDCL++N++ P
Sbjct: 66 GPICIGLDEEESPG----------------------------DISEDCLFINVFKP 93
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 101 bits (254), Expect = 4e-26
Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 28/117 (23%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
+VRT+ G + G+ A+ + FRG+PYA P+G LRF E W+D A +
Sbjct: 9 VVRTESGWIRGLKRRAEGN--KSYASFRGVPYAKQPLGELRFKELQPLEPWQDELDATQE 66
Query: 86 APVCPQ-DFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
PVC Q D G SE C++ NI+ P
Sbjct: 67 GPVCQQTDVLYGRIMRPR-------------------------GMSEACIHANIHVP 98
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 97.4 bits (243), Expect = 1e-24
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 32/116 (27%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
V T+ G V GV + + D+V++F+GIP+A+AP P W+ A F
Sbjct: 5 SVYTEGGFVEGVNKKL-SLFGDSVDIFKGIPFAAAPKA---LEKPERHPGWQGTLKAKSF 60
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
C Q + Q +EDCLYLNI+ P
Sbjct: 61 KKRCLQA--------------------TLTQDSTYG--------NEDCLYLNIWVP 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.038
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 25/86 (29%)
Query: 2 RIRLINQYQLL-----IYIILYLDYIAPR-IVRTKYGDVSG--VIINADNRYLDAVEVFR 53
+ N + L + I L + +V VSG + N L +
Sbjct: 352 YVNKTNSH--LPAGKQVEISLV---NGAKNLV------VSGPPQSLYGLNLTLRKAKAPS 400
Query: 54 G-----IPYAS-APVGNLRFMPPTTP 73
G IP++ + RF+P +P
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASP 426
Score = 28.9 bits (64), Expect = 0.83
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 33/146 (22%)
Query: 18 YLDYIAPRI---VRTKYGDVSGVIINA-DNRYLDAVEVFRGIPYASAPVGNLRFMPPTTP 73
+L Y++ + ++ V + + +N YL+ ++ A L TT
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-------HALAAKLLQENDTTL 116
Query: 74 ETWKDVKPAHKFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRG-------Y- 125
K++ + A + + + A+ A A +L + G Y
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA------QLVAIFGGQGNTDDYF 170
Query: 126 --LRNQSEDCLYLNIYSPIRKGLFFS 149
LR+ LY Y + L
Sbjct: 171 EELRD-----LY-QTYHVLVGDLIKF 190
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.39
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 7 NQYQLLIYIIL-YLDYIAPRIVRTKYGDVSGVIINADNR--YLDA 48
+Y+ L+ IL +L I ++ +KY D+ + + A++ + +A
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 29.4 bits (65), Expect = 0.55
Identities = 21/164 (12%), Positives = 53/164 (32%), Gaps = 39/164 (23%)
Query: 1 MRIRLINQYQLLIY------IILYLD-YIAPRIVRTKYGDVSGVIINADNRYLDAVEVFR 53
+ +++ Y + I YLD Y I + + N ++ + + +FR
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HH-----LKNIEH--PERMTLFR 494
Query: 54 GIPYASAPVGNLRFM-------------PPTTPETWKDVKPAHKFAPVCPQDFAAGATGG 100
+ + + RF+ + T + +K + +C D
Sbjct: 495 MV-FL-----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVN 546
Query: 101 AVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSPIRK 144
A+ + ++LR L + E ++ + +++
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEA-IFEEAHKQVQR 589
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 29.6 bits (66), Expect = 0.44
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 6/91 (6%)
Query: 53 RGIPYASAPVGNLRFMPPTTPETWKDVKPAHKFAPVCPQDFAAGATGGAVGAAAETPGAE 112
+ + R + P+ T D P A A + P
Sbjct: 19 SHMASMNRHFNATRKIDPSRGATLGDGSPNDMNRVEIGPTQLAFAEWHTARL--DLPDLA 76
Query: 113 KMRQPRLEMLRGYLRNQSEDCLYL----NIY 139
MR+ R L ++ + L + NI
Sbjct: 77 AMRRFRHRRLTDHVVARGYAGLLMFDPLNIR 107
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A
{Bacillus subtilis} SCOP: a.186.1.2
Length = 84
Score = 27.6 bits (61), Expect = 0.70
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 112 EKMRQPRLEMLRGYLRNQSEDCLY 135
E + Q ++L Y+ +E LY
Sbjct: 5 EVIEQRYHQLLSRYIAELTETSLY 28
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching,
protein phosphatase, RSBT, stress; 1.85A {Bacillus
subtilis} PDB: 2j70_A 2j6z_A
Length = 111
Score = 26.8 bits (59), Expect = 1.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 112 EKMRQPRLEMLRGYLRNQSEDCLY 135
E + Q ++L Y+ ++ LY
Sbjct: 5 EVIEQRYHQLLSRYIAELTKTSLY 28
>2cmz_A Spike glycoprotein; membrane, lipoprotein, transmembrane, envelope
protein, membrane protein; HET: PE4; 2.40A {Vesicular
stomatitis indiana virus} SCOP: e.76.1.2 PDB: 2j6j_A*
Length = 423
Score = 27.1 bits (59), Expect = 2.9
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 67 FMPPTTPETWKDVKPAHKFAPVCPQDFAAGATGGAVGAAAE 107
P WK+V + CP +G A +
Sbjct: 5 VFPHNQKGNWKNVPSNYH---YCPSSSDLNWHNDLIGTAIQ 42
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural
genomics, PSI, protein structure initiative; 2.80A
{Mycobacterium tuberculosis} SCOP: c.1.12.8
Length = 281
Score = 26.0 bits (58), Expect = 5.9
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 24 PRIVRTKYGDVSGVIINADNRYLDAVE 50
R V+ +Y DV G + A +Y V
Sbjct: 245 ARFVK-RYADVGGELRRAAMQYAQEVA 270
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics; HET: MSE; 1.75A {Neisseria meningitidis
serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Length = 275
Score = 25.2 bits (56), Expect = 8.6
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 24 PRIVRTKYGDVSGVIINADNRYLDAVE 50
+ V+ + + A Y+ V+
Sbjct: 227 AKFVK-NFMQGHDSVQAAVRAYVAEVK 252
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural
genomics, seattle structural genomics center for
infectious disease; 1.80A {Burkholderia thailandensis}
PDB: 3ez4_A
Length = 275
Score = 25.2 bits (56), Expect = 9.3
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 24 PRIVRTKYGDVSGVIINADNRYLDAVE 50
PR V+ + I A Y+ AV+
Sbjct: 239 PRFVK-DFMQGQPSIFAAVEAYVRAVK 264
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 25.3 bits (56), Expect = 9.5
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 74 ETWKDVKPAHKFAPVCPQDFAAGATGGAVGAAAETP 109
++ K AG+T GA+ A P
Sbjct: 89 DSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQP 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.429
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,445,916
Number of extensions: 143541
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 35
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)