RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9097
(152 letters)
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 110 bits (275), Expect = 1e-29
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 20/116 (17%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
+V+T G V G + R V V+ GIPYA PV +LRF P E W V A
Sbjct: 4 VVQTSSGPVRGRSVTVQGRE---VHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDATGL 60
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
+ C Q E E + N SEDCLY+N+++P
Sbjct: 61 SATCVQ-----------------ERYEYFPGFSGEEIWNPNTNVSEDCLYINVWAP 99
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 110 bits (274), Expect = 1e-29
Identities = 41/119 (34%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 23 APRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPA 82
+P +V T +G V G ++ + + V +F GIP+A P+G LRF PP E W VK A
Sbjct: 2 SPPVVDTVHGKVLGKFVSLEG-FAQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVKNA 60
Query: 83 HKFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
+ P+C QD AG + SEDCLYLNIY+P
Sbjct: 61 TSYPPMCTQDPKAGQLLSELFT---------------NRKENIPLKLSEDCLYLNIYTP 104
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 108 bits (269), Expect = 7e-29
Identities = 39/116 (33%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
+VR + G + G+ + A V F GIP+A PVG+ RFMPP W V A F
Sbjct: 9 LVRVRGGQLRGIRLKAPGG---PVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATTF 65
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
VC Q + G G P R SEDCLYLN+++P
Sbjct: 66 QNVCYQ-YVDTLYPGFEGTEMWNPN----------------RELSEDCLYLNVWTP 104
>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 526
Score = 105 bits (261), Expect = 8e-28
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
I+ TK G V G+ + V F GIPYA P+G LRF P + W D+ A K+
Sbjct: 2 IIATKNGKVRGMQLTVFGG---TVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKY 58
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
A C Q+ + G G+ P + SEDCLYLN++ P
Sbjct: 59 ANSCCQNI-DQSFPGFHGSEMWNPNT----------------DLSEDCLYLNVWIP 97
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 104 bits (259), Expect = 1e-27
Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 20/116 (17%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
+V TK G V G + + + F GIP+A PVGN+RF P + W V A +
Sbjct: 4 LVNTKSGKVMGTRVPVLS---SHISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNASTY 60
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
C Q + G G+ P R SEDCLYLNI+ P
Sbjct: 61 PNNCQQ-YVDEQFPGFSGSEMWNPN----------------REMSEDCLYLNIWVP 99
>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
(Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
Length = 544
Score = 104 bits (259), Expect = 2e-27
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 23 APRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPA 82
AP V +SGV+ V+ F+GIP+A P+ +LRF P A
Sbjct: 2 APTAVLNGNEVISGVLEGK-------VDTFKGIPFADPPLNDLRFKHPQPFTGSYQGLKA 54
Query: 83 HKFAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
+ F+P C Q + A + + L + + +EDCLYLN++ P
Sbjct: 55 NDFSPACMQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRP 113
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 104 bits (258), Expect = 2e-27
Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 30/117 (25%)
Query: 25 RIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHK 84
+IV T+YG V G + V ++GIPYA PVG RF P PE W+DV A
Sbjct: 3 QIVTTQYGKVKGT-------TENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATA 55
Query: 85 FAPVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
+ P+CPQ L + L QSEDCLY+N+++P
Sbjct: 56 YGPICPQP-----------------------SDLLSLSYTELPRQSEDCLYVNVFAP 89
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 97.5 bits (241), Expect = 4e-25
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 34/116 (29%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
++ Y GV + A V+ F G+ YAS P+G+LRF P P + ++ A ++
Sbjct: 7 VINLGYARYQGVRLEAG------VDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATEY 60
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
P+C + G + SEDCL++N++ P
Sbjct: 61 GPICIGLDEEESPG----------------------------DISEDCLFINVFKP 88
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 96.8 bits (239), Expect = 8e-25
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 34 VSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKFAPVCPQDF 93
+G I N + E F GIP+A PVGNLRF P + + + P C Q
Sbjct: 7 ANGDTITGLNAII--NEAFLGIPFAEPPVGNLRFKDPVPYSGSLNGQKFTSYGPSCMQQN 64
Query: 94 AAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
G E G + + + QSEDCL +N+ P
Sbjct: 65 PEGTFE-------ENLGKTALDLVMQSKVFQAVLPQSEDCLTINVVRP 105
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 88.9 bits (219), Expect = 5e-22
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 32/116 (27%)
Query: 26 IVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASAPVGNLRFMPPTTPETWKDVKPAHKF 85
V T+ G V GV + + D+V++F+GIP+A+AP P W+ A F
Sbjct: 5 SVYTEGGFVEGVNKKL-SLFGDSVDIFKGIPFAAAPKA---LEKPERHPGWQGTLKAKSF 60
Query: 86 APVCPQDFAAGATGGAVGAAAETPGAEKMRQPRLEMLRGYLRNQSEDCLYLNIYSP 141
C Q A T + +EDCLYLNI+ P
Sbjct: 61 KKRCLQ---ATLTQDST-------------------------YGNEDCLYLNIWVP 88
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 84
Score = 27.0 bits (60), Expect = 0.39
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 112 EKMRQPRLEMLRGYLRNQSEDCLY 135
E + Q ++L Y+ +E LY
Sbjct: 5 EVIEQRYHQLLSRYIAELTETSLY 28
>d1rwha3 b.30.5.2 (A:373-644) Chondroitinase AC {Arthrobacter
aurescens [TaxId: 43663]}
Length = 272
Score = 27.2 bits (60), Expect = 0.69
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 61 PVGNLRFMPPTTPET--WKDVKPAHKFAPVCPQDFAAGATGGAVGAAA 106
N +P T +T D A V +++ G V A
Sbjct: 68 ATANYNRLPGITVDTTPLPDKVEGQWGAAVPADEWSGATALGEVAAVG 115
>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
indiana virus [TaxId: 11277]}
Length = 409
Score = 27.6 bits (61), Expect = 0.74
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 67 FMPPTTPETWKDVKPAHKFAPVCPQDFAAGATGGAVGAAAET 108
P WK+V + + CP +G A +
Sbjct: 5 VFPHNQKGNWKNVPSNYHY---CPSSSDLNWHNDLIGTAIQV 43
>d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter
heparinus (Flavobacterium heparinum) [TaxId: 984]}
Length = 264
Score = 27.2 bits (60), Expect = 0.79
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 61 PVGNLRFMPPTTPETWKDVKP-AHKFAPVCPQDFAAGATGGAVGAAA 106
PV +P T + +P + DFA G + G GA+A
Sbjct: 67 PVWEWDKIPGITSRDYLTDRPLTKLWGEQGSNDFAGGVSDGVYGASA 113
>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
capensis omega virus [TaxId: 12541]}
Length = 539
Score = 26.5 bits (58), Expect = 1.7
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 21 YIAPRIVRTKYG-DVSGVIINADNRYLDAVEVFRGIPYASAPV 62
+ P R G+ + D AV FR + + + V
Sbjct: 417 FTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIV 459
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A
[TaxId: 5061]}
Length = 359
Score = 25.9 bits (56), Expect = 2.6
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 89 CPQDFAAGATGGAVGAAAETP 109
+ FA G TGG A P
Sbjct: 6 SAEGFAKGVTGGG-SATPVYP 25
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 24.8 bits (53), Expect = 4.2
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 9/38 (23%)
Query: 53 RGIPYASAPV---------GNLRFMPPTTPETWKDVKP 81
RG+ APV G L FM E + +P
Sbjct: 112 RGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARP 149
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 25.1 bits (53), Expect = 4.4
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 91 QDFAAGATGGAVGAAAETP 109
+DF AG A+ A P
Sbjct: 8 KDFLAGGVAAAISKTAVAP 26
>d1tg7a1 b.149.1.1 (A:570-666) Beta-galactosidase LacA, domain 3
{Penicillium sp. [TaxId: 5081]}
Length = 97
Score = 24.0 bits (52), Expect = 4.9
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 23 APRIVRTKYGDVSGVIINADNRYLDAVEVFRGIPYASA 60
A +VR+ Y D + + I AD +EV A
Sbjct: 35 AGYLVRSAYLDGNDLHIQADFNATTPIEVVGAPSGAKN 72
>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting
protein p14 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 118
Score = 24.0 bits (52), Expect = 6.4
Identities = 2/33 (6%), Positives = 11/33 (33%)
Query: 94 AAGATGGAVGAAAETPGAEKMRQPRLEMLRGYL 126
A+ + + ++ ++ + G +
Sbjct: 49 ASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRV 81
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537
{Neisseria meningitidis [TaxId: 487]}
Length = 84
Score = 23.1 bits (50), Expect = 8.7
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 14 YIILYLDYIAPRIVRTKYGDVSGVIINADNRYLDAVEVFR 53
+I L ++ R + G + + ADNR L + R
Sbjct: 43 LVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLMATR 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.429
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 586,492
Number of extensions: 26295
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 28
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.3 bits)