BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy91
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 191/332 (57%), Gaps = 55/332 (16%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFA LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P ++ +
Sbjct: 18 VGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIER 77
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DE+
Sbjct: 78 TVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLN 137
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACC 405
+ I+ K +D+ + + ++ +V D++ +E R
Sbjct: 138 RRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKK 197
Query: 406 SYIDD----QFRQY------------FNDESGLNRKNIVDNRFATN----------RHRN 439
+D+ + Y F +++ L + +I + +N R R
Sbjct: 198 RILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRL 257
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKL 499
+VENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L +RG R
Sbjct: 258 YPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERL----KRGGRKVE 312
Query: 500 KKDSAPDGLITETDRLLLEKDEELVKSTIIIS 531
+D D++LLEK+ EL + +I+
Sbjct: 313 NED-------MNKDQILLEKEAELRRMQEMIA 337
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 51/58 (87%)
Query: 178 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235
Y+GFA LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P EK
Sbjct: 17 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEK 74
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 57/80 (71%), Gaps = 10/80 (12%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP------- 131
Y+GFA LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P
Sbjct: 17 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIE 76
Query: 132 ---NVNGSNTVIEVAGTKVR 148
+ S IE G K+R
Sbjct: 77 RTVQIEASTVEIEERGVKLR 96
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 132 NVNGSNTVIEVAGTKVRGRQYPWGVVE 158
+V GSN +IE G KVRGR YPWGVVE
Sbjct: 238 SVVGSNQLIEAKGKKVRGRLYPWGVVE 264
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 172/297 (57%), Gaps = 48/297 (16%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFA LP QVHRKSVKKGF+FTL VVGESGLGKSTL+NSLFL+DLY +R +P ++ +
Sbjct: 18 VGFANLPNQVHRKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIER 77
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DE+
Sbjct: 78 TVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLN 137
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACC 405
+ I+ K +D+ + + ++ +V D++ +E R
Sbjct: 138 RRHIIDNRVHCCFYFISPFGHGLKPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLKK 197
Query: 406 SYIDD----QFRQY------------FNDESGLNRKNIVDNRFATN----------RHRN 439
+D+ + Y F +++ L + +I + +N R R
Sbjct: 198 RILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRL 257
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDR 496
+VENP+H+DF KLR LI TH QDL++VT+D+HYENFR++ L +RG R
Sbjct: 258 YPWGVVEVENPEHNDFLKLRTXLI-THXQDLQEVTQDLHYENFRSERL----KRGGR 309
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 50/58 (86%)
Query: 178 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235
Y+GFA LP QVHRKSVKKGF+FTL VVGESGLGKSTL+NSLFL+DLY +R +P EK
Sbjct: 17 YVGFANLPNQVHRKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEK 74
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 56/80 (70%), Gaps = 10/80 (12%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP------- 131
Y+GFA LP QVHRKSVKKGF+FTL VVGESGLGKSTL+NSLFL+DLY +R +P
Sbjct: 17 YVGFANLPNQVHRKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIE 76
Query: 132 ---NVNGSNTVIEVAGTKVR 148
+ S IE G K+R
Sbjct: 77 RTVQIEASTVEIEERGVKLR 96
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 132 NVNGSNTVIEVAGTKVRGRQYPWGVVE 158
+V GSN +IE G KVRGR YPWGVVE
Sbjct: 238 SVVGSNQLIEAKGKKVRGRLYPWGVVE 264
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 185 bits (469), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 171/304 (56%), Gaps = 48/304 (15%)
Query: 246 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305
+ LP QVHRKSVKKGF+FTL VVGESGLGKSTL+NSLFL+DLY +R + ++ +T
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQ 61
Query: 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTT 365
IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DE+ +
Sbjct: 62 IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRH 121
Query: 366 TIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACCSYI 408
I+ K +D+ + + ++ +V D++ +E R +
Sbjct: 122 IIDNRVHCCFYFISPFGHGLKPLDVAFXKAIHNKVNIVPVIAKADTLTLKERERLKKRIL 181
Query: 409 DD----QFRQY------------FNDESGLNRKNIVDNRFATN----------RHRNNAP 442
D+ + Y F +++ L + +I + +N R R
Sbjct: 182 DEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPW 241
Query: 443 TPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKD 502
+VENP+H+DF KLR LI TH QDL++VT+D+HYENFR++ L +RG R +D
Sbjct: 242 GVVEVENPEHNDFLKLRTXLI-THXQDLQEVTQDLHYENFRSERL----KRGGRKVENED 296
Query: 503 SAPD 506
D
Sbjct: 297 XNKD 300
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 45/54 (83%)
Query: 182 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235
+ LP QVHRKSVKKGF+FTL VVGESGLGKSTL+NSLFL+DLY +R + EK
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEK 55
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 51/76 (67%), Gaps = 10/76 (13%)
Query: 83 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP----------N 132
+ LP QVHRKSVKKGF+FTL VVGESGLGKSTL+NSLFL+DLY +R +
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQ 61
Query: 133 VNGSNTVIEVAGTKVR 148
+ S IE G K+R
Sbjct: 62 IEASTVEIEERGVKLR 77
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 132 NVNGSNTVIEVAGTKVRGRQYPWGVVE 158
+V GSN +IE G KVRGR YPWGVVE
Sbjct: 219 SVVGSNQLIEAKGKKVRGRLYPWGVVE 245
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 171/322 (53%), Gaps = 58/322 (18%)
Query: 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302
+GFA LP QV+RKSVK+GF+FTLMVVGESGLGKSTL+NSLFL+DLY + P + R K
Sbjct: 12 VGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKK 70
Query: 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362
T +E+ + I+E GV+L LT+VDTPGFGD++++ W+ YID +F Y N E+R
Sbjct: 71 TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVN 130
Query: 363 KTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACC 405
+ + K +DIE + + ++ ++ D++ EE C
Sbjct: 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEE-----C 185
Query: 406 SYIDDQFRQYFN---------------DESGLNRK-------------NIVDNRFATNRH 437
Q + +E+ L +K I++ R
Sbjct: 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRG 245
Query: 438 RNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG--- 494
R ++VEN +H DF LRNMLI THMQDLKDVT +VHYEN+R++ L+ ++ G
Sbjct: 246 RQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDN 305
Query: 495 --DRGKLKKDSAPDGLITETDR 514
++G+L K +P + E R
Sbjct: 306 NKNKGQLTK--SPLAQMEEERR 325
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/47 (82%), Positives = 45/47 (95%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 125
Y+GFA LP QV+RKSVK+GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 11 YVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLY 57
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/47 (82%), Positives = 45/47 (95%)
Query: 178 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224
Y+GFA LP QV+RKSVK+GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 11 YVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLY 57
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 127 DRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGS-------TVLTPSLIGSLFQTDRD 177
DR V GSNT+IEV G +VRGRQYPWGV E T+L LI + Q +D
Sbjct: 223 DRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKD 280
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 159/275 (57%), Gaps = 44/275 (16%)
Query: 258 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERG 317
KKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P ++ +T IE +++IEERG
Sbjct: 1 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERG 60
Query: 318 VKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK-------- 369
VKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DE+ + I+
Sbjct: 61 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYF 120
Query: 370 --------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDD----QFRQY- 415
K +D+ + + ++ +V D++ +E R +D+ + Y
Sbjct: 121 ISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHSIKIYH 180
Query: 416 -----------FNDESGLNRKNIVDNRFATN----------RHRNNAPTPSQVENPKHSD 454
F +++ L + +I + +N R R +VENP+H+D
Sbjct: 181 LPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHND 240
Query: 455 FNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQ 489
F KLR MLI THMQDL++VT+D+HYENFR++ L +
Sbjct: 241 FLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKR 274
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 194 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235
KKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P EK
Sbjct: 1 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEK 42
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 10/64 (15%)
Query: 95 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP----------NVNGSNTVIEVAG 144
KKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P + S IE G
Sbjct: 1 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERG 60
Query: 145 TKVR 148
K+R
Sbjct: 61 VKLR 64
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 132 NVNGSNTVIEVAGTKVRGRQYPWGVVE 158
+V GSN +IE G KVRGR YPWGVVE
Sbjct: 206 SVVGSNQLIEAKGKKVRGRLYPWGVVE 232
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 144/277 (51%), Gaps = 51/277 (18%)
Query: 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK 319
GF+FTLMVVGESGLGKSTL+NSLFL+DLY + P + R KT +E+ + I+E GV+
Sbjct: 1 GFEFTLMVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKKTVQVEQSKVLIKEGGVQ 59
Query: 320 LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK---------- 369
L LT+VDTPGFGD++++ W+ YID +F Y N E+R + +
Sbjct: 60 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIA 119
Query: 370 ------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN----- 417
K +DIE + + ++ ++ D++ EE C Q +
Sbjct: 120 PSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEE-----CQQFKKQIMKEIQEHKIK 174
Query: 418 ----------DESGLNRK-------------NIVDNRFATNRHRNNAPTPSQVENPKHSD 454
+E+ L +K I++ R R ++VEN +H D
Sbjct: 175 IYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCD 234
Query: 455 FNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQIS 491
F LRNMLI THMQDLKDVT +VHYEN+R++ L+ ++
Sbjct: 235 FTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVT 271
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 29/29 (100%)
Query: 97 GFDFTLMVVGESGLGKSTLVNSLFLSDLY 125
GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 1 GFEFTLMVVGESGLGKSTLINSLFLTDLY 29
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 29/29 (100%)
Query: 196 GFDFTLMVVGESGLGKSTLVNSLFLSDLY 224
GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 1 GFEFTLMVVGESGLGKSTLINSLFLTDLY 29
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 127 DRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGS-------TVLTPSLIGSLFQTDRD 177
DR V GSNT+IEV G +VRGRQYPWGV E T+L LI + Q +D
Sbjct: 195 DRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKD 252
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 142/274 (51%), Gaps = 51/274 (18%)
Query: 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK 319
GF+FTLMVVGESGLGKSTL+NSLFL+DLY + P + R KT +E+ + I+E GV+
Sbjct: 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKKTVQVEQSKVLIKEGGVQ 64
Query: 320 LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK---------- 369
L LT+VDTPGFGD++++ W+ YID +F Y N E+R + +
Sbjct: 65 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIA 124
Query: 370 ------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN----- 417
K +DIE + + ++ ++ D++ EE C Q +
Sbjct: 125 PSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEE-----CQQFKKQIMKEIQEHKIK 179
Query: 418 ----------DESGLNRK-------------NIVDNRFATNRHRNNAPTPSQVENPKHSD 454
+E+ L +K I++ R R ++VEN +H D
Sbjct: 180 IYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCD 239
Query: 455 FNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLS 488
F LRNMLI THMQDLKDVT +VHYEN+R++ L+
Sbjct: 240 FTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLA 273
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 29/29 (100%)
Query: 97 GFDFTLMVVGESGLGKSTLVNSLFLSDLY 125
GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 6 GFEFTLMVVGESGLGKSTLINSLFLTDLY 34
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 29/29 (100%)
Query: 196 GFDFTLMVVGESGLGKSTLVNSLFLSDLY 224
GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 6 GFEFTLMVVGESGLGKSTLINSLFLTDLY 34
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 127 DRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGS-------TVLTPSLIGSLFQTDRD 177
DR V GSNT+IEV G +VRGRQYPWGV E T+L LI + Q +D
Sbjct: 200 DRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKD 257
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 47/289 (16%)
Query: 237 SIPYS-DIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 295
++P + +GF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF + G+ P
Sbjct: 16 TVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE---PA 72
Query: 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF 355
+ + G ++ + D++E V+L+LT+V T GFGD IN E+S++ +ID QF Y
Sbjct: 73 THTQPG--VQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYL 130
Query: 356 NDENRQGKT------------------TTIEKKSMD-IEERGVKLRLTVVDTPGFGDSIN 396
+E + + T KS+D + + + ++ ++ D+I+
Sbjct: 131 QEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAIS 190
Query: 397 SEESWRACCSYIDD------QFRQYFNDESGLNRKNIVDNR---FAT------------- 434
E + + Q Q+ D+ + N N FA
Sbjct: 191 KSELTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKM 250
Query: 435 NRHRNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFR 483
R R QVEN H DF KLR MLI +M+DL++ T HYE +R
Sbjct: 251 MRARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYR 299
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 127
++GF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF + G+
Sbjct: 22 HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE 70
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 178 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226
++GF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF + G+
Sbjct: 22 HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE 70
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 133 VNGSNTVIEVAGTKVRGRQYPWGVVE 158
V GS +++ +R RQYPWG V+
Sbjct: 237 VIGSTEELKIGNKMMRARQYPWGTVQ 262
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 69/100 (69%), Gaps = 4/100 (4%)
Query: 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD--IEERGV 318
FDF +MVVG+SGLGKSTLVN+LF S + RK + N + T+E K++ IEE GV
Sbjct: 1 FDFNIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGV 58
Query: 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE 358
K++LTV+DTPGFGD IN+E W YI++Q+ ++ +E
Sbjct: 59 KMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEE 98
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 355 FNDENRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQ 414
+N E + KT I+ IEE GVK++LTV+DTPGFGD IN+E W YI++Q+ +
Sbjct: 34 WNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEK 93
Query: 415 YFNDESGLNRKN-IVDNR 431
+ +E + RK I D R
Sbjct: 94 FLKEEVNIARKKRIPDTR 111
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 446 QVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCL 487
+VEN H +F LR+ +I TH+QDLK+VT ++HYE +RA+ L
Sbjct: 229 EVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 197 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIP 239
FDF +MVVG+SGLGKSTLVN+LF S + RK + N + IP
Sbjct: 1 FDFNIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIP 41
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 10/61 (16%)
Query: 98 FDFTLMVVGESGLGKSTLVNSLFLSDLY-------GDRKVPN---VNGSNTVIEVAGTKV 147
FDF +MVVG+SGLGKSTLVN+LF S + + K+P + VIE G K+
Sbjct: 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM 60
Query: 148 R 148
+
Sbjct: 61 K 61
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 133 VNGSNTVIEVAGTKVRGRQYPWGVVE 158
V GS+ +V G +V GR+ PWG++E
Sbjct: 204 VVGSDKEYQVNGKRVLGRKTPWGIIE 229
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK 319
GF ++V G +GKS+ +N+L + V V+D G TT KSM++ G
Sbjct: 32 GFRRYIVVAGRRNVGKSSFMNALV------GQNVSIVSDYAGTTTDPVYKSMELHPIG-- 83
Query: 320 LRLTVVDTPGFGD 332
+T+VDTPG D
Sbjct: 84 -PVTLVDTPGLDD 95
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 268 VGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDT 327
VG S +GKS+L+N+LF +RK+ V+ GKT + I V + VD
Sbjct: 29 VGRSNVGKSSLLNALF------NRKIAFVSKTPGKTRS-------INFYLVNSKYYFVDL 75
Query: 328 PGFGDSINSEESWRACCSYIDDQFR 352
PG+G + S++ ++D F+
Sbjct: 76 PGYGYAKVSKKERMLWKRLVEDYFK 100
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTL-----MVVGESGLGKS 276
DL D + VNE+ I Y +IG+ L H + K + L + G+SG+GKS
Sbjct: 171 DLLDDEGMDFVNEQMDI-YRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKS 229
Query: 277 TLVNSLF-LSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPG 329
+L+N+L L + V NV+ G+ TT + G V+D+PG
Sbjct: 230 SLLNALLGLQNEILTNDVSNVSG-LGQHTTTAARLYHFPHGG-----DVIDSPG 277
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 155 GVVEG---STVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGK 211
G+VE ++VLT + D+ I A LPE +L ++ +G
Sbjct: 54 GIVEAVHETSVLTRPVKPIAANIDQIVIVSAILPE------------LSLNIIDRYLVGC 101
Query: 212 STL-VNSLFL---SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTL-- 265
TL V L + DL D + VNE+ I Y +IG+ L H + K + L
Sbjct: 102 ETLQVEPLIVLNKIDLLDDEGMDFVNEQMDI-YRNIGYRVLMVSSHTQDGLKPLEEALTG 160
Query: 266 ---MVVGESGLGKSTLVNSLF 283
+ G+SG+GKS+L+N+L
Sbjct: 161 RISIFAGQSGVGKSSLLNALL 181
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTL-----MVVGESGLGKS 276
DL D + VNE+ I Y +IG+ L H + K + L + G+SG+GKS
Sbjct: 163 DLLDDEGMAFVNEQMDI-YRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKS 221
Query: 277 TLVNSLF 283
+L+N+L
Sbjct: 222 SLLNALL 228
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320
F F L++VG++ +GK+ +V K ++RQG T ++ +E +G ++
Sbjct: 28 FLFKLVLVGDASVGKTCVVQRF---------KTGAFSERQGSTIGVDFTMKTLEIQGKRV 78
Query: 321 RLTVVDTPG 329
+L + DT G
Sbjct: 79 KLQIWDTAG 87
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 168 IGSLFQTDRDYIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 219
+GSL R+++GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 1 MGSLV---REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 77 RDYIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 120
R+++GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 6 REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 236 GSIPYSDIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 283
GS+ +GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 2 GSLVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 168 IGSLFQTDRDYIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 219
+GSL R+++GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 1 MGSLV---REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 77 RDYIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 120
R+++GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 6 REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 236 GSIPYSDIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 283
GS+ +GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 2 GSLVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 168 IGSLFQTDRDYIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 219
+GSL R+++GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 1 MGSLV---REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 77 RDYIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 120
R+++GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 6 REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 236 GSIPYSDIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 283
GS+ +GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 2 GSLVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 77 RDYIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 120
R+++GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 5 REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 56
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 176 RDYIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 219
R+++GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 5 REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 56
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 236 GSIPYSDIGFATLPEQVHRKSV--------KKGFDFTLMVVGESGLGKSTLVNSLF 283
GS+ +GF P K + K T++V+G+ G+GKS+ VNSL
Sbjct: 1 GSLVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 56
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Query: 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLT 323
T++ G S +GKSTL+ L +KV R+GK + +K ++IE + K
Sbjct: 3 TIIFAGRSNVGKSTLIYRL------TGKKV-----RRGKRPGVTRKIIEIEWKNHK---- 47
Query: 324 VVDTPGFG 331
++D PGFG
Sbjct: 48 IIDXPGFG 55
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGD--RKVPNVNDRQGKTTTIEKKSM-----DIEE 315
F +M+VGESG+GKSTL + L GD ++ N D + ++K+ + DI E
Sbjct: 3 FKVMLVGESGVGKSTLAGT--FGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 316 RG 317
+G
Sbjct: 61 QG 62
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 100 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNT 138
F +M+VGESG+GKSTL + L GD N +T
Sbjct: 3 FKVMLVGESGVGKSTLAGT--FGGLQGDHAHEMENSEDT 39
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 199 FTLMVVGESGLGKSTLVNSLFLSDLYGD 226
F +M+VGESG+GKSTL + L GD
Sbjct: 3 FKVMLVGESGVGKSTLAGT--FGGLQGD 28
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 252 VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311
V R S + + F L+++G+SG+GKS L+ F D Y + + + ++ K
Sbjct: 15 VPRGSPEYDYLFKLLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIR 65
Query: 312 DIEERGVKLRLTVVDTPG 329
IE G ++L + DT G
Sbjct: 66 TIELDGKTIKLQIWDTAG 83
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM-DIEE 315
F +M++GESG+GKSTL + L GD N ++ + T E++ M D EE
Sbjct: 13 FKVMLLGESGVGKSTLAGT--FGGLQGD----NAHEMENSEDTYERRIMVDKEE 60
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 100 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNT 138
F +M++GESG+GKSTL + L GD N +T
Sbjct: 13 FKVMLLGESGVGKSTLAGT--FGGLQGDNAHEMENSEDT 49
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
+ + ++G +GKST+ N+L ++Y + + G T+EKK + E G K +
Sbjct: 4 YEIALIGNPNVGKSTIFNALTGENVY-------IGNWPG--VTVEKKEGEFEYNGEKFK- 53
Query: 323 TVVDTPG 329
VVD PG
Sbjct: 54 -VVDLPG 59
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
+ + ++G +GKST+ N+L ++Y + + G T+EKK + E G K +
Sbjct: 4 YEIALIGNPNVGKSTIFNALTGENVY-------IGNWPG--VTVEKKEGEFEYNGEKFK- 53
Query: 323 TVVDTPG 329
VVD PG
Sbjct: 54 -VVDLPG 59
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 16/101 (15%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM-DIEERGVKLR 321
F +M+VGESG+GKSTL + L GD + ++ + T E++ M D EE +
Sbjct: 24 FKVMLVGESGVGKSTLAGT--FGGLQGD----SAHEPENPEDTYERRIMVDKEE----VT 73
Query: 322 LTVVDTPGFGDSINSEESW-RACCSYIDDQFRQYFNDENRQ 361
L V D GD+ W R C D F F+ +R+
Sbjct: 74 LVVYDIWEQGDA----GGWLRDHCLQTGDAFLIVFSVTDRR 110
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 100 FTLMVVGESGLGKSTLVNSLFLSDLYGD 127
F +M+VGESG+GKSTL + L GD
Sbjct: 24 FKVMLVGESGVGKSTLAGT--FGGLQGD 49
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 199 FTLMVVGESGLGKSTLVNSLFLSDLYGD 226
F +M+VGESG+GKSTL + L GD
Sbjct: 24 FKVMLVGESGVGKSTLAGT--FGGLQGD 49
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIE------VAGTKVRG 149
++VGESG+GK+ + L + GD VP V T+ +AGTK RG
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGD--VPEVMADCTIYSLDIGSLLAGTKYRG 261
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
+ + ++G +GKST+ N+L ++Y + + G T+EKK + E G K +
Sbjct: 5 YEIALIGNPNVGKSTIFNALTGENVY-------IGNWPG--VTVEKKEGEFEYNGEKFK- 54
Query: 323 TVVDTPG 329
VVD PG
Sbjct: 55 -VVDLPG 60
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GKS L+ F D Y + + + ++ K IE G ++L
Sbjct: 34 FKLLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKL 84
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 85 QIWDTAG 91
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GKS L+ F D Y + + + ++ K IE G ++L
Sbjct: 7 FKLLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKL 57
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 58 QIWDTAG 64
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GKS L+ F D Y + + + ++ K IE G ++L
Sbjct: 7 FKLLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKL 57
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 58 QIWDTAG 64
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GKS L+ F D Y + + + ++ K IE G ++L
Sbjct: 10 FKLLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKL 60
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 61 QIWDTAG 67
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GKS L+ F D Y + + + ++ K IE G ++L
Sbjct: 9 FKLLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKL 59
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 60 QIWDTAG 66
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 237 SIPYSDIGFATLPEQVHRKSVKKGFDF-----TLMVVGESGLGKSTLVNSLF-LSDLYGD 290
+I +SD+ F + P+Q + +++K F T +VG +G GKST+ L+ D GD
Sbjct: 17 NIEFSDVNF-SYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGD 75
Query: 291 RKV--PNVN 297
K+ NVN
Sbjct: 76 IKIGGKNVN 84
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 20/90 (22%)
Query: 260 GFDFTLM----VVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315
G+D+ L+ ++G+SG+GKS L++ ++ D K T +E + +E
Sbjct: 7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK---------STIGVEFATRTLEI 57
Query: 316 RGVKLRLTVVDTPGFGDSINSEESWRACCS 345
G +++ + DT G +E +RA S
Sbjct: 58 EGKRIKAQIWDTAG-------QERYRAITS 80
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GKS L+ F D Y + + + ++ K IE G ++L
Sbjct: 10 FKLLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKL 60
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 61 QIWDTAG 67
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
+ + G S +GKS+ +NSL + + + + GKT T+ ++ E L
Sbjct: 26 IALAGRSNVGKSSFINSLI-----NRKNLARTSSKPGKTQTLNFYIINDE-------LHF 73
Query: 325 VDTPGFG---DSINSEESW-RACCSYI 347
VD PG+G S + E+W R +YI
Sbjct: 74 VDVPGYGFAKVSKSEREAWGRMIETYI 100
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 20/90 (22%)
Query: 260 GFD----FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315
G+D F ++++G+SG+GKS L+ S F +D + N T +E + IE
Sbjct: 4 GYDYDYLFKIVLIGDSGVGKSNLL-SRFTTDEF--------NIESKSTIGVEFATRTIEV 54
Query: 316 RGVKLRLTVVDTPGFGDSINSEESWRACCS 345
K++ + DT G E +RA S
Sbjct: 55 ENKKIKAQIWDTAGL-------ERYRAITS 77
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 14/67 (20%)
Query: 196 GFD----FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQ 251
G+D F ++++G+SG+GKS L+ S F +D + N+ K +I + FAT +
Sbjct: 4 GYDYDYLFKIVLIGDSGVGKSNLL-SRFTTDEF------NIESKSTIG---VEFATRTIE 53
Query: 252 VHRKSVK 258
V K +K
Sbjct: 54 VENKKIK 60
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GKS L+ F D Y + + + ++ K IE G ++L
Sbjct: 17 FKLLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKL 67
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 68 QIWDTAG 74
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 284 LSDLYGDRKVPNVNDRQ-------------GKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330
LS L+G K PNVN + GKTTT K + ++RG K+ L D
Sbjct: 86 LSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD---- 141
Query: 331 GDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVDTPG 390
+ ++ + Q + + N Q I KK +DI + K+ + +VDT G
Sbjct: 142 ---VYRPAAYDQLLQLGNQIGVQVYGEPNNQ-NPIEIAKKGVDIFVKN-KMDIIIVDTAG 196
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 284 LSDLYGDRKVPNVNDRQ-------------GKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330
LS L+G K PNVN + GKTTT K + ++RG K+ L D
Sbjct: 79 LSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD---- 134
Query: 331 GDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVDTPG 390
+ ++ + Q + + N Q I KK +DI + K+ + +VDT G
Sbjct: 135 ---VYRPAAYDQLLQLGNQIGVQVYGEPNNQ-NPIEIAKKGVDIFVKN-KMDIIIVDTAG 189
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 104 VVGESGLGKSTLVN----SLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWG 155
V G SG GKSTLVN ++ + L G R+VP + T ++ VR Q P G
Sbjct: 673 VTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRVDQSPIG 728
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320
+ F +++G+ G+GKS L++ D P+ T +E + IE G K+
Sbjct: 29 YIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPH-------TIGVEFGTRIIEVSGQKI 79
Query: 321 RLTVVDTPGFG 331
+L + DT G G
Sbjct: 80 KLQIWDTAGQG 90
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 17/77 (22%)
Query: 253 HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312
H KS + + ++G +GKST+ N+L ++Y + + G T+EKK +
Sbjct: 4 HMKS------YEIALIGNPNVGKSTIFNALTGENVY-------IGNWPG--VTVEKKEGE 48
Query: 313 IEERGVKLRLTVVDTPG 329
E G K + VVD PG
Sbjct: 49 FEYNGEKFK--VVDLPG 63
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 256 SVKKGFD--FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDI 313
S+ + +D F L+++G+SG+GKS+L+ F + + + T ++ K +
Sbjct: 1 SMARDYDHLFKLLIIGDSGVGKSSLLLR-FADNTFSGSYIT--------TIGVDFKIRTV 51
Query: 314 EERGVKLRLTVVDTPG 329
E G K++L + DT G
Sbjct: 52 EINGEKVKLQIWDTAG 67
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320
F ++++G G+GK++L+ F D + + V ++ K +E RG K+
Sbjct: 25 FKLQVIIIGSRGVGKTSLMER-FTDDTFCEACKSTVG--------VDFKIKTVELRGKKI 75
Query: 321 RLTVVDTPG 329
RL + DT G
Sbjct: 76 RLQIWDTAG 84
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ-GKTTTIEKKSMDIEERGVKLR 321
F ++++G+ G+GKS+L+N R V N D Q T +E + D+E G +
Sbjct: 12 FKIILLGDGGVGKSSLMN----------RYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVT 61
Query: 322 LTVVDTPG 329
+ + DT G
Sbjct: 62 MQIWDTAG 69
>pdb|1WVI|A Chain A, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|B Chain B, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|C Chain C, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|D Chain D, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
Length = 257
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 146 KVRGRQYPWGVVEGSTVLTPSLIGSLF------QTDRDYIGFATLPEQVHRKSVKKGFDF 199
+++ RQ P+ +V +T TP ++ + +T + I ATL + +K+G
Sbjct: 30 RLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRG--K 87
Query: 200 TLMVVGESGLGKS 212
T V+GE+GL K+
Sbjct: 88 TAYVIGETGLKKA 100
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GK+ L+ F D Y + + + ++ K IE G ++L
Sbjct: 17 FKLLLIGDSGVGKNCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKL 67
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 68 QIWDTAG 74
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ-GKTTTIEKKSMDIEERGVKLR 321
F ++++G+ G+GKS+L+N R V N D Q T +E + D+E G +
Sbjct: 10 FKVILLGDGGVGKSSLMN----------RYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT 59
Query: 322 LTVVDTPG 329
+ + DT G
Sbjct: 60 MQIWDTAG 67
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
+++VG+ +GKSTL+N L L DR + V D G TT + S +I RG+ R
Sbjct: 244 LRMVIVGKPNVGKSTLLNRL----LNEDRAI--VTDIPG--TTRDVISEEIVIRGILFR- 294
Query: 323 TVVDTPGFGDSIN 335
+VDT G N
Sbjct: 295 -IVDTAGVRSETN 306
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ-GKTTTIEKKSMDIEERGVKLR 321
F ++++G+ G+GKS+L+N R V N D Q T +E + D+E G +
Sbjct: 8 FKVILLGDGGVGKSSLMN----------RYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT 57
Query: 322 LTVVDTPG 329
+ + DT G
Sbjct: 58 MQIWDTAG 65
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
L+++G+SG+GKS L+ F D Y + + + ++ K IE G ++L +
Sbjct: 1 LLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKLQI 51
Query: 325 VDTPG 329
DT G
Sbjct: 52 WDTAG 56
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 17/67 (25%)
Query: 266 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL--RLT 323
+++G +GKSTL+N L + + DR G TT+ ++ VK+ L
Sbjct: 124 LIIGIPNVGKSTLINRL------AKKNIAKTGDRPGITTS---------QQWVKVGKELE 168
Query: 324 VVDTPGF 330
++DTPG
Sbjct: 169 LLDTPGI 175
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
L+++G+SG+GKS L+ F D Y + + + ++ K IE G ++L +
Sbjct: 2 LLLIGDSGVGKSCLLLR-FADDTYTESYISTIG--------VDFKIRTIELDGKTIKLQI 52
Query: 325 VDTPG 329
DT G
Sbjct: 53 WDTAG 57
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG-KTTTIEKKSMDIEERGVKLRLT 323
++++G+ G+GKS+L+N R V N D Q T +E + D+E G + L
Sbjct: 10 VILLGDGGVGKSSLMN----------RYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQ 59
Query: 324 VVDTPG 329
+ DT G
Sbjct: 60 IWDTAG 65
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 252 VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311
V R S+ F F +V+G +G GKS L++ + D T +E S
Sbjct: 15 VPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQD---------SNHTIGVEFGSR 65
Query: 312 DIEERGVKLRLTVVDTPG 329
+ G ++L + DT G
Sbjct: 66 VVNVGGKTVKLQIWDTAG 83
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 19/88 (21%)
Query: 199 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSI-PYSDIGFATLPEQVHRKSV 257
T++V+G+ G+GKS+ VNS+ G+R V SI P+ G P V
Sbjct: 40 LTILVMGKGGVGKSSTVNSII-----GERVV-------SISPFQSEG----PRPVMVSRS 83
Query: 258 KKGFDFTLMVVGESGLGKSTLVNSLFLS 285
+ G FTL ++ GL + +N + L+
Sbjct: 84 RAG--FTLNIIDTPGLIEGGYINDMALN 109
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
T++V G+ G+GKS+ VNS+ G+R V +++ Q + + + + L
Sbjct: 40 LTILVXGKGGVGKSSTVNSII-----GERVV-SISPFQSEG----PRPVXVSRSRAGFTL 89
Query: 323 TVVDTPGF 330
++DTPG
Sbjct: 90 NIIDTPGL 97
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
+++VG++G GKS NS+ G + + + T EK+S +E L V
Sbjct: 32 IVLVGKTGAGKSATGNSIL-----GRKVFHSGTAAKSITKKCEKRSSSWKE----TELVV 82
Query: 325 VDTPGFGDS 333
VDTPG D+
Sbjct: 83 VDTPGIFDT 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,231,301
Number of Sequences: 62578
Number of extensions: 725465
Number of successful extensions: 2972
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 2820
Number of HSP's gapped (non-prelim): 437
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)