Query psy91
Match_columns 541
No_of_seqs 676 out of 4638
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:52:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy91.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/91hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2655|consensus 100.0 3.4E-62 7.5E-67 490.7 19.4 298 242-539 1-350 (366)
2 COG5019 CDC3 Septin family pro 100.0 4.2E-56 9.2E-61 442.4 20.1 298 241-538 2-356 (373)
3 KOG1547|consensus 100.0 2.5E-54 5.3E-59 402.5 15.1 254 239-492 23-318 (336)
4 KOG3859|consensus 100.0 3.1E-51 6.7E-56 388.8 7.7 253 237-494 17-310 (406)
5 PF00735 Septin: Septin; Inte 100.0 9E-48 1.9E-52 385.1 14.7 236 259-494 1-279 (281)
6 cd01850 CDC_Septin CDC/Septin. 100.0 1.3E-41 2.9E-46 341.0 16.8 232 259-490 1-275 (276)
7 COG1126 GlnQ ABC-type polar am 100.0 1.1E-33 2.3E-38 263.2 6.0 200 79-387 2-210 (240)
8 COG2884 FtsE Predicted ATPase 100.0 1.2E-31 2.6E-36 244.2 7.6 191 80-377 2-202 (223)
9 COG1116 TauB ABC-type nitrate/ 100.0 2.7E-31 5.9E-36 254.3 8.0 193 79-387 3-205 (248)
10 COG1125 OpuBA ABC-type proline 100.0 4.1E-31 8.8E-36 250.8 5.5 199 80-387 2-210 (309)
11 COG3842 PotA ABC-type spermidi 100.0 2.2E-30 4.7E-35 263.3 5.2 197 77-386 3-210 (352)
12 COG1136 SalX ABC-type antimicr 100.0 2.6E-30 5.6E-35 247.3 5.2 192 80-376 2-207 (226)
13 COG1135 AbcC ABC-type metal io 100.0 5.1E-30 1.1E-34 250.3 7.1 201 80-387 2-216 (339)
14 COG1127 Ttg2A ABC-type transpo 100.0 8.7E-29 1.9E-33 234.0 7.4 204 77-386 6-219 (263)
15 COG3839 MalK ABC-type sugar tr 100.0 8.1E-29 1.7E-33 250.5 6.9 196 79-387 3-208 (338)
16 COG3638 ABC-type phosphate/pho 99.9 1.1E-28 2.3E-33 232.8 4.1 192 78-376 2-212 (258)
17 COG1118 CysA ABC-type sulfate/ 99.9 2E-28 4.3E-33 238.7 6.0 198 79-386 2-211 (345)
18 COG1120 FepC ABC-type cobalami 99.9 1.5E-27 3.3E-32 232.6 8.0 199 79-387 2-213 (258)
19 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 9.2E-27 2E-31 226.0 8.1 188 77-376 2-203 (254)
20 COG1117 PstB ABC-type phosphat 99.9 3.6E-27 7.9E-32 218.8 3.4 199 77-382 5-217 (253)
21 COG4181 Predicted ABC-type tra 99.9 1.6E-25 3.4E-30 200.7 6.7 193 79-377 6-212 (228)
22 PRK11432 fbpC ferric transport 99.9 1.6E-25 3.5E-30 231.9 6.9 198 78-387 5-211 (351)
23 COG4525 TauB ABC-type taurine 99.9 1.7E-25 3.8E-30 204.6 5.4 191 80-386 4-206 (259)
24 PRK11650 ugpC glycerol-3-phosp 99.9 2E-25 4.4E-30 231.7 6.4 197 79-387 3-209 (356)
25 TIGR03265 PhnT2 putative 2-ami 99.9 2.2E-25 4.9E-30 231.2 6.3 197 79-387 4-209 (353)
26 PRK09452 potA putrescine/sperm 99.9 3.1E-25 6.7E-30 231.4 6.8 201 75-387 10-219 (375)
27 TIGR03258 PhnT 2-aminoethylpho 99.9 2.9E-25 6.3E-30 230.7 6.2 198 78-387 4-213 (362)
28 COG4175 ProV ABC-type proline/ 99.9 2.4E-25 5.1E-30 217.5 5.0 188 92-386 41-238 (386)
29 COG1124 DppF ABC-type dipeptid 99.9 3.8E-25 8.3E-30 210.2 6.3 198 79-386 3-215 (252)
30 TIGR02314 ABC_MetN D-methionin 99.9 3E-25 6.5E-30 228.8 5.5 201 80-387 2-215 (343)
31 COG1122 CbiO ABC-type cobalt t 99.9 1.8E-24 4E-29 210.6 10.6 201 78-387 2-213 (235)
32 COG1131 CcmA ABC-type multidru 99.9 4.4E-25 9.5E-30 223.4 6.5 198 79-387 4-211 (293)
33 PRK11607 potG putrescine trans 99.9 9.3E-25 2E-29 228.2 6.8 200 76-387 16-224 (377)
34 COG4598 HisP ABC-type histidin 99.9 3.7E-25 8E-30 199.8 2.5 203 78-386 5-225 (256)
35 COG0411 LivG ABC-type branched 99.9 7.3E-25 1.6E-29 208.5 4.3 205 78-392 3-232 (250)
36 PRK13537 nodulation ABC transp 99.9 1.3E-24 2.8E-29 221.9 6.4 201 76-387 4-212 (306)
37 COG4161 ArtP ABC-type arginine 99.9 1.2E-24 2.5E-29 193.3 5.2 194 79-377 2-206 (242)
38 COG3840 ThiQ ABC-type thiamine 99.9 1.8E-24 4E-29 195.9 6.3 196 80-387 2-204 (231)
39 PRK10851 sulfate/thiosulfate t 99.9 2.1E-24 4.5E-29 223.9 7.1 197 79-387 2-211 (353)
40 PRK11000 maltose/maltodextrin 99.9 2.8E-24 6.2E-29 224.5 6.2 197 79-387 3-208 (369)
41 cd03261 ABC_Org_Solvent_Resist 99.9 3E-24 6.5E-29 211.3 5.9 201 80-387 1-211 (235)
42 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.8E-24 6E-29 209.0 5.4 199 80-386 1-213 (218)
43 PRK09536 btuD corrinoid ABC tr 99.9 4.6E-24 1E-28 223.9 6.9 199 79-387 3-213 (402)
44 PRK13536 nodulation factor exp 99.9 5.3E-24 1.2E-28 219.8 7.2 199 78-387 40-246 (340)
45 TIGR00960 3a0501s02 Type II (G 99.9 4.2E-24 9.2E-29 207.5 5.3 200 80-386 2-211 (216)
46 COG4555 NatA ABC-type Na+ tran 99.9 1.8E-24 4E-29 199.0 2.1 196 80-386 2-206 (245)
47 cd03265 ABC_DrrA DrrA is the A 99.9 6.5E-24 1.4E-28 206.7 5.4 196 80-386 1-205 (220)
48 cd03259 ABC_Carb_Solutes_like 99.9 7.8E-24 1.7E-28 205.1 5.5 195 80-386 1-204 (213)
49 PRK11153 metN DL-methionine tr 99.9 9E-24 1.9E-28 218.9 5.7 201 80-387 2-215 (343)
50 TIGR01186 proV glycine betaine 99.9 8.2E-24 1.8E-28 219.4 5.3 194 87-387 1-204 (363)
51 cd03264 ABC_drug_resistance_li 99.9 9.5E-24 2.1E-28 204.2 5.2 195 80-386 1-202 (211)
52 TIGR01288 nodI ATP-binding ABC 99.9 1.3E-23 2.8E-28 214.4 6.0 197 79-386 4-208 (303)
53 cd03218 ABC_YhbG The ABC trans 99.9 1.8E-23 3.8E-28 205.3 6.0 197 80-386 1-206 (232)
54 PRK10070 glycine betaine trans 99.9 1.5E-23 3.2E-28 220.0 5.7 225 56-387 5-239 (400)
55 cd03219 ABC_Mj1267_LivG_branch 99.9 1.8E-23 4E-28 205.8 5.9 197 80-386 1-216 (236)
56 COG4604 CeuD ABC-type enteroch 99.9 8.9E-24 1.9E-28 193.7 3.4 187 80-376 2-200 (252)
57 COG3845 ABC-type uncharacteriz 99.9 3.6E-23 7.9E-28 213.6 8.2 202 77-387 2-214 (501)
58 PRK13647 cbiO cobalt transport 99.9 1.9E-23 4.1E-28 210.2 5.6 199 78-386 3-211 (274)
59 PRK13650 cbiO cobalt transport 99.9 1.9E-23 4E-28 210.8 5.5 198 78-386 3-213 (279)
60 PRK11629 lolD lipoprotein tran 99.9 2.1E-23 4.6E-28 204.9 5.6 201 78-386 4-218 (233)
61 cd03296 ABC_CysA_sulfate_impor 99.9 3.5E-23 7.5E-28 204.2 7.0 197 79-387 2-211 (239)
62 PRK10908 cell division protein 99.9 2.7E-23 5.9E-28 202.7 5.9 200 80-386 2-210 (222)
63 PLN03211 ABC transporter G-25; 99.9 7.1E-23 1.5E-27 228.4 10.0 229 50-386 34-280 (659)
64 TIGR02673 FtsE cell division A 99.9 2.5E-23 5.4E-28 201.7 5.5 200 80-386 2-210 (214)
65 cd03258 ABC_MetN_methionine_tr 99.9 2.9E-23 6.4E-28 203.9 5.8 200 80-386 2-214 (233)
66 TIGR02211 LolD_lipo_ex lipopro 99.9 2.7E-23 5.8E-28 202.5 5.4 199 80-386 2-214 (221)
67 cd03266 ABC_NatA_sodium_export 99.9 1.9E-23 4.1E-28 203.1 4.4 196 80-386 2-209 (218)
68 TIGR03415 ABC_choXWV_ATP choli 99.9 6.9E-24 1.5E-28 221.0 1.2 201 81-387 26-239 (382)
69 cd03263 ABC_subfamily_A The AB 99.9 2.9E-23 6.2E-28 202.2 5.5 195 80-386 1-205 (220)
70 cd03225 ABC_cobalt_CbiO_domain 99.9 2.3E-23 5.1E-28 201.5 4.8 195 82-386 2-207 (211)
71 cd03293 ABC_NrtD_SsuB_transpor 99.9 4E-23 8.8E-28 201.2 6.3 192 80-386 1-205 (220)
72 cd03269 ABC_putative_ATPase Th 99.9 2.8E-23 6E-28 200.8 5.1 193 80-386 1-201 (210)
73 TIGR03608 L_ocin_972_ABC putat 99.9 2.1E-23 4.5E-28 201.0 4.1 188 82-375 1-197 (206)
74 cd03262 ABC_HisP_GlnQ_permease 99.9 3.3E-23 7.1E-28 200.7 5.4 199 80-386 1-208 (213)
75 TIGR03522 GldA_ABC_ATP gliding 99.9 3.5E-23 7.6E-28 211.0 5.8 196 79-386 2-205 (301)
76 cd03301 ABC_MalK_N The N-termi 99.9 4E-23 8.7E-28 200.1 5.9 195 80-386 1-204 (213)
77 PRK10584 putative ABC transpor 99.9 4.1E-23 8.8E-28 202.2 5.9 203 76-386 3-219 (228)
78 PRK13637 cbiO cobalt transport 99.9 4.7E-23 1E-27 208.7 6.5 203 79-387 2-219 (287)
79 COG4136 ABC-type uncharacteriz 99.9 9.3E-23 2E-27 179.2 7.2 183 79-373 2-196 (213)
80 cd03260 ABC_PstB_phosphate_tra 99.9 3.9E-23 8.5E-28 202.2 5.0 198 80-386 1-213 (227)
81 PRK13548 hmuV hemin importer A 99.9 6.5E-23 1.4E-27 204.6 6.6 204 79-386 2-214 (258)
82 PRK13635 cbiO cobalt transport 99.9 5.1E-23 1.1E-27 207.6 5.9 198 78-386 4-213 (279)
83 cd03256 ABC_PhnC_transporter A 99.9 6.5E-23 1.4E-27 202.4 6.1 201 80-387 1-219 (241)
84 PRK11248 tauB taurine transpor 99.9 7.7E-23 1.7E-27 203.6 6.5 192 80-386 2-202 (255)
85 cd03295 ABC_OpuCA_Osmoprotecti 99.9 5.7E-23 1.2E-27 203.1 5.4 199 80-386 1-209 (242)
86 cd03292 ABC_FtsE_transporter F 99.9 4.8E-23 1E-27 199.7 4.7 200 80-386 1-209 (214)
87 cd03268 ABC_BcrA_bacitracin_re 99.9 4.7E-23 1E-27 198.9 4.6 191 80-386 1-199 (208)
88 PRK11831 putative ABC transpor 99.9 7.3E-23 1.6E-27 205.5 6.1 202 78-386 6-217 (269)
89 PRK13634 cbiO cobalt transport 99.9 5.7E-23 1.2E-27 208.4 5.2 203 79-387 2-220 (290)
90 COG1137 YhbG ABC-type (unclass 99.9 1.7E-23 3.7E-28 192.4 1.2 199 79-387 4-213 (243)
91 TIGR02315 ABC_phnC phosphonate 99.9 8.4E-23 1.8E-27 201.9 6.2 201 80-387 2-220 (243)
92 cd03224 ABC_TM1139_LivF_branch 99.9 8E-23 1.7E-27 199.2 5.6 195 80-386 1-205 (222)
93 PRK13651 cobalt transporter AT 99.9 7.8E-23 1.7E-27 208.4 5.5 203 79-386 2-238 (305)
94 TIGR01188 drrA daunorubicin re 99.9 6.6E-23 1.4E-27 209.2 5.0 189 88-387 2-198 (302)
95 PRK09493 glnQ glutamine ABC tr 99.9 8.7E-23 1.9E-27 201.5 5.6 200 80-387 2-210 (240)
96 PRK15079 oligopeptide ABC tran 99.9 8.5E-23 1.8E-27 210.2 5.5 205 76-386 5-235 (331)
97 PRK13641 cbiO cobalt transport 99.9 9.1E-23 2E-27 206.6 5.6 204 79-387 2-219 (287)
98 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.3E-22 2.8E-27 199.8 6.3 196 80-387 2-206 (236)
99 cd03294 ABC_Pro_Gly_Bertaine T 99.9 8.7E-23 1.9E-27 204.9 5.2 200 81-387 26-235 (269)
100 PRK11264 putative amino-acid A 99.9 1.4E-22 3.1E-27 201.2 6.7 203 79-387 3-218 (250)
101 PRK13643 cbiO cobalt transport 99.9 1.4E-22 3.1E-27 205.3 6.1 202 80-387 2-218 (288)
102 cd03235 ABC_Metallic_Cations A 99.9 1.4E-22 3.1E-27 196.3 5.4 190 82-386 2-205 (213)
103 TIGR01978 sufC FeS assembly AT 99.9 1.8E-22 4E-27 199.5 6.2 199 80-386 1-218 (243)
104 PRK14242 phosphate transporter 99.9 2E-22 4.4E-27 200.5 6.5 206 76-387 3-222 (253)
105 COG0410 LivF ABC-type branched 99.9 1.8E-22 3.8E-27 190.8 5.6 200 78-387 2-211 (237)
106 PRK10762 D-ribose transporter 99.9 2.8E-22 6.1E-27 218.5 7.9 200 78-387 3-215 (501)
107 PRK14247 phosphate ABC transpo 99.9 2.4E-22 5.2E-27 199.6 6.7 202 79-387 3-219 (250)
108 cd03226 ABC_cobalt_CbiO_domain 99.9 1.6E-22 3.5E-27 194.8 5.2 188 82-386 2-199 (205)
109 PRK10575 iron-hydroxamate tran 99.9 2.6E-22 5.6E-27 201.1 6.8 201 77-387 9-222 (265)
110 COG1129 MglA ABC-type sugar tr 99.9 3.4E-22 7.3E-27 210.5 7.9 219 76-403 5-241 (500)
111 PRK13632 cbiO cobalt transport 99.9 1.6E-22 3.6E-27 203.1 5.3 199 78-387 6-216 (271)
112 PRK13636 cbiO cobalt transport 99.9 1.9E-22 4.2E-27 203.8 5.7 201 78-386 4-215 (283)
113 PRK11247 ssuB aliphatic sulfon 99.9 2.6E-22 5.6E-27 199.9 6.5 189 77-386 10-207 (257)
114 PRK10895 lipopolysaccharide AB 99.9 3E-22 6.5E-27 197.8 6.8 198 79-386 3-210 (241)
115 PRK13646 cbiO cobalt transport 99.9 1.8E-22 3.8E-27 204.4 5.1 202 80-386 3-219 (286)
116 PRK13631 cbiO cobalt transport 99.9 3.6E-22 7.9E-27 204.8 7.5 206 76-387 18-250 (320)
117 PRK14267 phosphate ABC transpo 99.9 2.5E-22 5.4E-27 199.8 6.1 205 77-386 2-221 (253)
118 PRK11231 fecE iron-dicitrate t 99.9 2.6E-22 5.6E-27 200.0 6.2 198 79-386 2-211 (255)
119 PRK13644 cbiO cobalt transport 99.9 2.1E-22 4.6E-27 202.6 5.6 197 80-387 2-209 (274)
120 PRK13549 xylose transporter AT 99.9 4E-22 8.6E-27 217.6 7.9 200 78-387 4-217 (506)
121 PRK13640 cbiO cobalt transport 99.9 2.1E-22 4.6E-27 203.5 5.2 198 78-386 4-216 (282)
122 PRK10619 histidine/lysine/argi 99.9 3.5E-22 7.6E-27 199.2 6.7 206 77-387 3-226 (257)
123 PRK09700 D-allose transporter 99.9 5E-22 1.1E-26 217.1 8.1 199 78-386 4-218 (510)
124 TIGR03411 urea_trans_UrtD urea 99.9 5.3E-22 1.2E-26 196.1 7.4 197 79-386 2-215 (242)
125 PRK10253 iron-enterobactin tra 99.9 4E-22 8.7E-27 199.7 6.5 200 77-386 5-217 (265)
126 TIGR00972 3a0107s01c2 phosphat 99.9 3.9E-22 8.4E-27 197.8 6.1 202 80-387 2-217 (247)
127 cd03298 ABC_ThiQ_thiamine_tran 99.9 4.9E-22 1.1E-26 192.3 6.7 193 80-386 1-202 (211)
128 PRK13638 cbiO cobalt transport 99.9 3.1E-22 6.6E-27 201.2 5.3 199 80-386 2-209 (271)
129 COG4559 ABC-type hemin transpo 99.9 1.5E-22 3.2E-27 187.9 2.7 195 80-377 2-206 (259)
130 PRK13652 cbiO cobalt transport 99.9 4.1E-22 8.8E-27 200.9 6.1 198 79-386 3-211 (277)
131 PRK13633 cobalt transporter AT 99.9 4.5E-22 9.8E-27 200.9 6.3 201 77-387 2-218 (280)
132 PRK15439 autoinducer 2 ABC tra 99.9 7.2E-22 1.6E-26 215.7 8.3 198 76-387 8-214 (510)
133 PRK11308 dppF dipeptide transp 99.9 4E-22 8.6E-27 205.1 5.6 203 78-386 4-228 (327)
134 PRK09984 phosphonate/organopho 99.8 5E-22 1.1E-26 198.7 5.9 204 77-386 2-226 (262)
135 PRK13538 cytochrome c biogenes 99.8 4E-22 8.6E-27 191.9 5.0 185 80-377 2-194 (204)
136 PRK11300 livG leucine/isoleuci 99.8 5.6E-22 1.2E-26 197.5 6.2 200 78-387 4-228 (255)
137 PRK13642 cbiO cobalt transport 99.8 4.4E-22 9.6E-27 200.6 5.5 199 78-387 3-214 (277)
138 PRK13648 cbiO cobalt transport 99.8 5E-22 1.1E-26 199.4 5.9 198 78-386 6-215 (269)
139 TIGR03005 ectoine_ehuA ectoine 99.8 4.7E-22 1E-26 197.7 5.4 202 80-387 1-221 (252)
140 PRK11124 artP arginine transpo 99.8 5.3E-22 1.1E-26 196.2 5.7 202 79-386 2-214 (242)
141 PRK11022 dppD dipeptide transp 99.8 4.3E-22 9.4E-27 204.8 5.3 204 79-386 3-227 (326)
142 cd03257 ABC_NikE_OppD_transpor 99.8 5.5E-22 1.2E-26 194.1 5.7 201 80-386 2-219 (228)
143 PRK14269 phosphate ABC transpo 99.8 7.5E-22 1.6E-26 195.6 6.6 200 79-386 2-214 (246)
144 KOG0061|consensus 99.8 7E-22 1.5E-26 218.3 6.8 176 91-373 42-231 (613)
145 PRK10247 putative ABC transpor 99.8 7.5E-22 1.6E-26 192.9 6.3 198 77-387 5-211 (225)
146 TIGR03873 F420-0_ABC_ATP propo 99.8 8.4E-22 1.8E-26 196.4 6.6 197 80-386 2-210 (256)
147 PRK14241 phosphate transporter 99.8 8.1E-22 1.8E-26 196.7 6.5 204 78-386 3-220 (258)
148 PRK14268 phosphate ABC transpo 99.8 6.9E-22 1.5E-26 197.3 5.9 205 77-387 10-227 (258)
149 PRK11614 livF leucine/isoleuci 99.8 4.8E-22 1E-26 195.8 4.6 197 79-387 5-211 (237)
150 PRK14250 phosphate ABC transpo 99.8 8E-22 1.7E-26 194.8 6.2 195 79-387 3-206 (241)
151 COG4148 ModC ABC-type molybdat 99.8 9.8E-22 2.1E-26 189.2 6.5 172 103-387 28-203 (352)
152 PRK13639 cbiO cobalt transport 99.8 6.7E-22 1.4E-26 199.1 5.5 199 80-386 2-210 (275)
153 PRK14235 phosphate transporter 99.8 9.3E-22 2E-26 197.2 6.4 207 75-387 15-236 (267)
154 PRK10744 pstB phosphate transp 99.8 1E-21 2.2E-26 196.2 6.7 205 77-387 11-229 (260)
155 PRK11144 modC molybdate transp 99.8 8.5E-22 1.9E-26 204.8 6.2 193 80-387 2-203 (352)
156 PRK13649 cbiO cobalt transport 99.8 7.8E-22 1.7E-26 199.2 5.7 202 80-386 3-218 (280)
157 PRK14256 phosphate ABC transpo 99.8 1.6E-21 3.4E-26 194.0 7.5 206 77-387 2-221 (252)
158 PRK11288 araG L-arabinose tran 99.8 1.4E-21 3E-26 213.1 7.7 200 78-386 3-213 (501)
159 TIGR01166 cbiO cobalt transpor 99.8 4.8E-22 1E-26 189.2 3.5 178 90-374 3-189 (190)
160 COG4152 ABC-type uncharacteriz 99.8 5.9E-22 1.3E-26 187.5 4.0 192 79-384 2-201 (300)
161 PRK15093 antimicrobial peptide 99.8 7.9E-22 1.7E-26 203.4 5.3 204 79-386 3-232 (330)
162 PRK14273 phosphate ABC transpo 99.8 1.1E-21 2.5E-26 195.2 6.2 203 78-386 6-222 (254)
163 PRK14270 phosphate ABC transpo 99.8 1.3E-21 2.8E-26 194.5 6.3 206 76-387 1-220 (251)
164 PRK13543 cytochrome c biogenes 99.8 1.9E-21 4.1E-26 188.7 7.3 193 78-386 10-210 (214)
165 cd03231 ABC_CcmA_heme_exporter 99.8 1E-21 2.2E-26 188.6 5.3 178 80-373 1-186 (201)
166 PRK14259 phosphate ABC transpo 99.8 1.6E-21 3.6E-26 195.7 6.9 203 78-387 12-227 (269)
167 TIGR03410 urea_trans_UrtE urea 99.8 7.5E-22 1.6E-26 193.5 4.3 195 80-386 1-205 (230)
168 TIGR02142 modC_ABC molybdenum 99.8 1.2E-21 2.6E-26 204.0 5.9 193 84-386 4-205 (354)
169 PRK09473 oppD oligopeptide tra 99.8 1.2E-21 2.7E-26 201.7 5.6 207 76-386 9-235 (330)
170 TIGR01189 ccmA heme ABC export 99.8 7.7E-22 1.7E-26 189.0 3.7 180 80-373 1-188 (198)
171 PRK13547 hmuV hemin importer A 99.8 1.5E-21 3.3E-26 195.9 5.8 204 80-387 2-229 (272)
172 PRK13645 cbiO cobalt transport 99.8 1.5E-21 3.3E-26 198.0 5.4 205 78-387 5-225 (289)
173 cd03300 ABC_PotA_N PotA is an 99.8 1.8E-21 3.8E-26 191.2 5.6 195 80-386 1-204 (232)
174 PRK15112 antimicrobial peptide 99.8 1.7E-21 3.8E-26 195.3 5.6 201 78-387 3-224 (267)
175 TIGR02324 CP_lyasePhnL phospho 99.8 1.6E-21 3.6E-26 190.4 5.2 191 80-375 2-212 (224)
176 TIGR03269 met_CoM_red_A2 methy 99.8 1.5E-21 3.3E-26 213.8 5.3 202 80-387 1-243 (520)
177 PRK10771 thiQ thiamine transpo 99.8 2.7E-21 5.9E-26 189.9 6.6 193 80-386 2-203 (232)
178 PRK13540 cytochrome c biogenes 99.8 1.7E-21 3.7E-26 187.0 4.8 182 80-376 2-191 (200)
179 TIGR02769 nickel_nikE nickel i 99.8 2.5E-21 5.4E-26 194.0 6.0 202 79-386 2-224 (265)
180 TIGR00968 3a0106s01 sulfate AB 99.8 2.5E-21 5.3E-26 190.8 5.9 196 80-387 1-205 (237)
181 TIGR02982 heterocyst_DevA ABC 99.8 1.8E-21 4E-26 189.5 4.8 199 80-386 2-214 (220)
182 TIGR01277 thiQ thiamine ABC tr 99.8 3.3E-21 7.1E-26 186.8 6.6 192 81-386 2-202 (213)
183 PRK13539 cytochrome c biogenes 99.8 2.7E-21 5.7E-26 186.6 5.6 183 79-377 2-192 (207)
184 PRK10982 galactose/methyl gala 99.8 3.5E-21 7.5E-26 209.5 7.2 195 82-386 1-207 (491)
185 PRK14237 phosphate transporter 99.8 4.3E-21 9.4E-26 192.4 7.2 206 76-387 17-236 (267)
186 PRK14274 phosphate ABC transpo 99.8 3.6E-21 7.8E-26 192.2 6.5 205 77-387 10-228 (259)
187 cd03299 ABC_ModC_like Archeal 99.8 3E-21 6.4E-26 190.0 5.7 195 80-387 1-204 (235)
188 COG4619 ABC-type uncharacteriz 99.8 9.2E-22 2E-26 176.1 1.8 204 80-395 4-215 (223)
189 PRK14261 phosphate ABC transpo 99.8 5.2E-21 1.1E-25 190.3 7.2 205 76-386 3-221 (253)
190 PRK14239 phosphate transporter 99.8 3.9E-21 8.3E-26 191.1 6.1 204 78-387 4-221 (252)
191 TIGR02633 xylG D-xylose ABC tr 99.8 4.6E-21 9.9E-26 209.1 7.2 199 80-387 2-215 (500)
192 cd03297 ABC_ModC_molybdenum_tr 99.8 3.5E-21 7.6E-26 186.7 5.5 193 84-386 5-205 (214)
193 PRK14240 phosphate transporter 99.8 4.5E-21 9.7E-26 190.5 6.4 203 79-387 3-219 (250)
194 TIGR03740 galliderm_ABC gallid 99.8 3.5E-21 7.7E-26 187.9 5.4 189 80-386 1-197 (223)
195 PRK14249 phosphate ABC transpo 99.8 6.3E-21 1.4E-25 189.5 7.3 204 77-386 2-219 (251)
196 CHL00131 ycf16 sulfate ABC tra 99.8 7.6E-21 1.7E-25 189.0 7.6 201 78-386 6-225 (252)
197 KOG0058|consensus 99.8 4.2E-21 9.1E-26 206.5 6.0 195 75-375 461-666 (716)
198 COG1123 ATPase components of v 99.8 6.4E-21 1.4E-25 202.2 7.3 203 76-386 277-503 (539)
199 PRK10261 glutathione transport 99.8 3.9E-21 8.5E-26 214.3 5.9 205 77-387 311-538 (623)
200 cd03245 ABCC_bacteriocin_expor 99.8 4.9E-21 1.1E-25 186.4 5.8 200 79-386 2-211 (220)
201 cd03234 ABCG_White The White s 99.8 5.4E-21 1.2E-25 187.0 6.0 196 79-386 3-217 (226)
202 cd03251 ABCC_MsbA MsbA is an e 99.8 6E-21 1.3E-25 187.6 6.2 198 80-387 1-210 (234)
203 PRK14248 phosphate ABC transpo 99.8 6.8E-21 1.5E-25 191.2 6.7 206 76-387 18-237 (268)
204 PRK14245 phosphate ABC transpo 99.8 6.2E-21 1.3E-25 189.5 6.2 204 78-387 2-219 (250)
205 PRK14253 phosphate ABC transpo 99.8 5.4E-21 1.2E-25 189.8 5.7 201 79-386 3-217 (249)
206 cd03267 ABC_NatA_like Similar 99.8 6.1E-21 1.3E-25 187.9 5.7 189 87-386 29-227 (236)
207 PRK14254 phosphate ABC transpo 99.8 9.8E-21 2.1E-25 191.5 7.3 200 77-383 37-249 (285)
208 PRK14275 phosphate ABC transpo 99.8 7.1E-21 1.5E-25 192.7 6.3 206 76-387 36-255 (286)
209 PRK14246 phosphate ABC transpo 99.8 7.8E-21 1.7E-25 189.5 6.5 208 76-386 7-225 (257)
210 PRK14251 phosphate ABC transpo 99.8 7E-21 1.5E-25 189.2 6.1 204 78-387 3-220 (251)
211 PRK11701 phnK phosphonate C-P 99.8 8E-21 1.7E-25 189.6 6.3 205 77-386 4-225 (258)
212 cd03254 ABCC_Glucan_exporter_l 99.8 6E-21 1.3E-25 187.0 5.2 198 79-386 2-210 (229)
213 PRK14271 phosphate ABC transpo 99.8 1.4E-20 3E-25 189.5 7.8 204 77-387 19-236 (276)
214 TIGR02868 CydC thiol reductant 99.8 4.7E-21 1E-25 210.5 4.7 187 78-371 333-528 (529)
215 PRK14262 phosphate ABC transpo 99.8 9.2E-21 2E-25 188.2 6.2 203 79-387 3-219 (250)
216 PLN03140 ABC transporter G fam 99.8 9E-21 2E-25 226.4 7.0 216 52-386 864-1093(1470)
217 PRK14260 phosphate ABC transpo 99.8 9.3E-21 2E-25 189.2 6.1 204 78-387 6-223 (259)
218 PRK13549 xylose transporter AT 99.8 1.8E-20 3.9E-25 204.6 8.5 201 78-386 258-478 (506)
219 cd03252 ABCC_Hemolysin The ABC 99.8 9.7E-21 2.1E-25 186.5 5.7 197 80-386 1-209 (237)
220 cd03248 ABCC_TAP TAP, the Tran 99.8 1.4E-20 3E-25 184.0 6.8 201 76-386 8-221 (226)
221 PRK10261 glutathione transport 99.8 7.6E-21 1.6E-25 212.0 5.5 209 76-387 9-243 (623)
222 PRK14255 phosphate ABC transpo 99.8 1.3E-20 2.8E-25 187.3 6.3 204 78-387 4-221 (252)
223 PRK14272 phosphate ABC transpo 99.8 1.4E-20 3.1E-25 187.1 6.4 203 79-386 4-220 (252)
224 COG0444 DppD ABC-type dipeptid 99.8 9.1E-21 2E-25 188.0 4.9 204 80-386 2-227 (316)
225 cd03229 ABC_Class3 This class 99.8 1.1E-20 2.4E-25 177.9 5.3 165 80-386 1-174 (178)
226 PRK14243 phosphate transporter 99.8 1.6E-20 3.4E-25 188.1 6.6 203 78-387 9-224 (264)
227 PRK14265 phosphate ABC transpo 99.8 2.2E-20 4.7E-25 188.0 7.6 202 78-386 19-233 (274)
228 PRK09700 D-allose transporter 99.8 2.9E-20 6.3E-25 203.2 9.1 199 78-386 264-482 (510)
229 PRK14258 phosphate ABC transpo 99.8 1.7E-20 3.6E-25 187.6 6.5 205 78-387 6-225 (261)
230 PRK14238 phosphate transporter 99.8 1.4E-20 3E-25 189.2 5.8 204 77-386 22-239 (271)
231 COG2274 SunT ABC-type bacterio 99.8 1.4E-20 3.1E-25 209.1 6.5 205 75-387 467-681 (709)
232 cd03230 ABC_DR_subfamily_A Thi 99.8 1.5E-20 3.1E-25 176.3 5.2 160 80-386 1-168 (173)
233 PRK14236 phosphate transporter 99.8 2.2E-20 4.9E-25 187.8 6.7 205 77-387 23-241 (272)
234 TIGR02633 xylG D-xylose ABC tr 99.8 2.9E-20 6.3E-25 202.8 7.9 201 78-386 256-476 (500)
235 PRK15134 microcin C ABC transp 99.8 1.5E-20 3.3E-25 206.3 5.7 206 78-387 4-231 (529)
236 TIGR02323 CP_lyasePhnK phospho 99.8 1.6E-20 3.4E-25 186.8 5.3 204 78-386 2-222 (253)
237 cd03253 ABCC_ATM1_transporter 99.8 2.1E-20 4.5E-25 184.0 5.8 197 80-386 1-208 (236)
238 cd03232 ABC_PDR_domain2 The pl 99.8 1.4E-20 3.1E-25 179.4 4.5 166 79-386 3-182 (192)
239 PRK09580 sufC cysteine desulfu 99.8 4E-20 8.7E-25 183.4 7.9 199 80-386 2-219 (248)
240 PRK15056 manganese/iron transp 99.8 4.4E-20 9.6E-25 185.6 8.2 195 79-386 6-215 (272)
241 TIGR01257 rim_protein retinal- 99.8 2E-20 4.3E-25 225.3 6.7 189 77-376 926-1124(2272)
242 COG4674 Uncharacterized ABC-ty 99.8 2.1E-20 4.5E-25 171.4 5.3 199 78-386 4-219 (249)
243 PRK10419 nikE nickel transport 99.8 2.8E-20 6E-25 186.7 6.7 202 79-386 3-225 (268)
244 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 2.1E-20 4.5E-25 184.3 5.4 198 80-387 1-211 (238)
245 PRK15134 microcin C ABC transp 99.8 1.8E-20 3.9E-25 205.7 5.4 204 78-387 274-500 (529)
246 PRK14244 phosphate ABC transpo 99.8 2.2E-20 4.9E-25 185.6 5.5 202 80-387 6-222 (251)
247 cd03244 ABCC_MRP_domain2 Domai 99.8 3.4E-20 7.5E-25 180.6 6.7 199 79-386 2-210 (221)
248 TIGR01257 rim_protein retinal- 99.8 1.8E-20 3.9E-25 225.6 5.5 199 78-387 1936-2144(2272)
249 COG1119 ModF ABC-type molybden 99.8 3.5E-20 7.5E-25 176.6 6.3 204 75-387 27-248 (257)
250 PRK10938 putative molybdenum t 99.8 2.4E-20 5.2E-25 202.9 5.9 197 79-387 3-209 (490)
251 PRK11174 cysteine/glutathione 99.8 2.5E-20 5.4E-25 207.3 6.2 202 78-387 348-557 (588)
252 PRK09544 znuC high-affinity zi 99.8 3.3E-20 7.1E-25 184.2 5.8 183 78-386 3-194 (251)
253 PRK14263 phosphate ABC transpo 99.8 5.8E-20 1.3E-24 183.6 7.5 205 76-387 5-222 (261)
254 cd03246 ABCC_Protease_Secretio 99.8 3E-20 6.4E-25 174.2 5.0 158 80-386 1-168 (173)
255 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 3.3E-20 7.1E-25 210.7 6.0 200 78-387 476-685 (710)
256 PRK14266 phosphate ABC transpo 99.8 4.8E-20 1E-24 183.1 6.1 202 79-386 3-218 (250)
257 KOG0055|consensus 99.8 2.1E-20 4.5E-25 211.8 3.8 193 75-373 346-549 (1228)
258 KOG0057|consensus 99.8 4.2E-20 9.1E-25 192.6 5.4 193 78-376 350-550 (591)
259 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 5.7E-20 1.2E-24 207.9 6.9 199 78-387 450-658 (686)
260 cd03213 ABCG_EPDR ABCG transpo 99.8 3.2E-20 7E-25 177.2 4.1 167 79-386 3-185 (194)
261 PRK14252 phosphate ABC transpo 99.8 8.2E-20 1.8E-24 183.0 6.9 207 77-387 14-234 (265)
262 PRK10790 putative multidrug tr 99.8 6.5E-20 1.4E-24 204.1 6.2 201 78-387 339-548 (592)
263 TIGR03269 met_CoM_red_A2 methy 99.8 6.9E-20 1.5E-24 200.8 6.0 208 77-387 277-502 (520)
264 TIGR00956 3a01205 Pleiotropic 99.8 1.1E-19 2.4E-24 217.6 8.2 188 79-375 759-965 (1394)
265 PRK13541 cytochrome c biogenes 99.8 5.8E-20 1.3E-24 175.6 4.6 177 80-375 2-186 (195)
266 PRK14264 phosphate ABC transpo 99.8 8.7E-20 1.9E-24 186.4 6.0 201 76-382 42-268 (305)
267 PRK10418 nikD nickel transport 99.8 1.3E-19 2.8E-24 180.4 6.8 197 79-387 4-215 (254)
268 PRK11176 lipid transporter ATP 99.8 6.9E-20 1.5E-24 203.6 5.3 203 78-387 340-552 (582)
269 TIGR01193 bacteriocin_ABC ABC- 99.8 7.1E-20 1.5E-24 207.8 5.5 202 78-387 472-682 (708)
270 COG1132 MdlB ABC-type multidru 99.8 6.7E-20 1.4E-24 203.0 5.1 202 78-387 327-537 (567)
271 PRK03695 vitamin B12-transport 99.8 9E-20 1.9E-24 180.9 5.5 197 81-386 2-206 (248)
272 COG4988 CydD ABC-type transpor 99.8 1.1E-19 2.4E-24 192.0 6.5 199 80-387 321-528 (559)
273 cd03250 ABCC_MRP_domain1 Domai 99.8 2.6E-19 5.5E-24 172.4 8.4 186 80-386 1-200 (204)
274 TIGR00958 3a01208 Conjugate Tr 99.8 1E-19 2.2E-24 206.2 6.4 201 77-387 476-687 (711)
275 PRK14257 phosphate ABC transpo 99.8 1.6E-19 3.5E-24 185.8 7.3 205 77-387 78-298 (329)
276 cd03228 ABCC_MRP_Like The MRP 99.8 8.6E-20 1.9E-24 170.8 4.6 157 80-386 1-167 (171)
277 PRK13657 cyclic beta-1,2-gluca 99.8 1.1E-19 2.3E-24 202.2 6.0 202 78-387 333-543 (588)
278 TIGR02857 CydD thiol reductant 99.8 9E-20 1.9E-24 200.4 5.4 192 78-375 319-520 (529)
279 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 7.1E-20 1.5E-24 178.9 4.0 185 80-386 23-215 (224)
280 COG1123 ATPase components of v 99.8 1.4E-19 3.1E-24 192.0 6.5 205 78-386 4-228 (539)
281 cd03215 ABC_Carb_Monos_II This 99.8 1.3E-19 2.8E-24 171.3 5.5 162 79-386 4-177 (182)
282 TIGR00955 3a01204 The Eye Pigm 99.8 1.5E-19 3.3E-24 201.4 6.8 191 90-386 36-240 (617)
283 cd03290 ABCC_SUR1_N The SUR do 99.8 2.8E-19 6E-24 173.9 7.8 201 81-386 2-214 (218)
284 cd03247 ABCC_cytochrome_bd The 99.8 9.6E-20 2.1E-24 171.5 4.3 159 80-386 1-169 (178)
285 cd03233 ABC_PDR_domain1 The pl 99.8 1.6E-19 3.4E-24 173.6 5.7 173 80-386 4-193 (202)
286 cd03289 ABCC_CFTR2 The CFTR su 99.8 9.1E-20 2E-24 183.0 4.1 200 79-387 2-210 (275)
287 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.1E-19 2.5E-24 174.3 4.4 168 80-387 1-179 (200)
288 cd03288 ABCC_SUR2 The SUR doma 99.8 2.4E-19 5.1E-24 178.8 6.9 201 76-387 16-228 (257)
289 PRK10535 macrolide transporter 99.8 2E-19 4.2E-24 201.5 6.9 198 78-386 3-216 (648)
290 TIGR03375 type_I_sec_LssB type 99.8 1.4E-19 3E-24 205.0 5.4 202 78-387 462-673 (694)
291 PTZ00265 multidrug resistance 99.8 1.5E-19 3.3E-24 216.8 5.7 204 78-388 1164-1433(1466)
292 PRK10762 D-ribose transporter 99.8 3E-19 6.5E-24 194.8 7.6 197 78-387 256-469 (501)
293 TIGR01184 ntrCD nitrate transp 99.8 1.9E-19 4.2E-24 176.5 5.0 177 95-386 1-188 (230)
294 TIGR01192 chvA glucan exporter 99.8 2.6E-19 5.5E-24 198.7 6.4 202 78-387 333-543 (585)
295 KOG0065|consensus 99.8 5.7E-19 1.2E-23 200.1 9.1 181 90-374 802-992 (1391)
296 TIGR01842 type_I_sec_PrtD type 99.8 3E-19 6.5E-24 196.8 6.7 202 78-387 315-527 (544)
297 PRK10938 putative molybdenum t 99.8 2E-19 4.3E-24 195.7 5.2 203 77-386 258-476 (490)
298 PRK11160 cysteine/glutathione 99.8 2.8E-19 6E-24 198.1 6.3 201 78-387 337-547 (574)
299 PRK11288 araG L-arabinose tran 99.8 5.2E-19 1.1E-23 192.9 7.8 197 78-386 256-469 (501)
300 PRK15064 ABC transporter ATP-b 99.8 4.4E-19 9.6E-24 194.8 7.0 214 80-387 2-226 (530)
301 PRK11819 putative ABC transpor 99.8 5.4E-19 1.2E-23 195.0 7.3 215 77-387 4-234 (556)
302 cd03369 ABCC_NFT1 Domain 2 of 99.8 6E-19 1.3E-23 170.2 6.7 182 78-386 5-196 (207)
303 TIGR02203 MsbA_lipidA lipid A 99.8 3.2E-19 6.9E-24 197.8 5.0 203 78-387 329-541 (571)
304 TIGR02204 MsbA_rel ABC transpo 99.8 3.6E-19 7.7E-24 197.6 5.2 202 78-387 336-548 (576)
305 PRK10789 putative multidrug tr 99.8 5E-19 1.1E-23 195.9 6.1 202 78-387 312-523 (569)
306 TIGR01187 potA spermidine/putr 99.8 2.4E-19 5.1E-24 184.6 3.2 172 104-387 1-175 (325)
307 COG4987 CydC ABC-type transpor 99.8 2.6E-19 5.7E-24 186.6 3.3 192 79-376 336-537 (573)
308 TIGR01846 type_I_sec_HlyB type 99.8 4.7E-19 1E-23 200.6 5.5 202 78-387 454-665 (694)
309 KOG0056|consensus 99.8 9.8E-19 2.1E-23 179.0 6.8 191 76-372 534-733 (790)
310 TIGR02770 nickel_nikD nickel i 99.7 4.6E-19 9.9E-24 173.9 4.2 185 94-387 1-200 (230)
311 KOG0055|consensus 99.7 5.5E-19 1.2E-23 200.3 5.4 193 75-373 983-1186(1228)
312 cd03223 ABCD_peroxisomal_ALDP 99.7 1.2E-18 2.5E-23 162.3 6.4 151 80-386 1-160 (166)
313 PRK15439 autoinducer 2 ABC tra 99.7 2.1E-18 4.6E-23 188.4 8.5 196 77-386 266-476 (510)
314 PRK10982 galactose/methyl gala 99.7 2.4E-18 5.1E-23 187.3 8.6 199 78-386 249-464 (491)
315 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.7E-18 5.8E-23 189.4 8.3 200 79-387 4-232 (552)
316 PRK13545 tagH teichoic acids e 99.7 1.6E-18 3.4E-23 184.8 6.0 186 78-386 20-216 (549)
317 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.3E-18 5E-23 189.9 7.2 186 77-387 320-514 (552)
318 PLN03130 ABC transporter C fam 99.7 2.2E-18 4.7E-23 208.7 7.2 201 78-387 1236-1446(1622)
319 cd03214 ABC_Iron-Siderophores_ 99.7 7E-19 1.5E-23 166.0 2.2 162 81-386 1-171 (180)
320 PTZ00265 multidrug resistance 99.7 1.6E-18 3.5E-23 208.0 5.5 241 79-387 382-653 (1466)
321 PLN03232 ABC transporter C fam 99.7 2.4E-18 5.2E-23 208.0 6.7 201 78-387 1233-1443(1495)
322 PRK13546 teichoic acids export 99.7 5E-18 1.1E-22 169.7 7.8 173 91-386 36-216 (264)
323 PRK15064 ABC transporter ATP-b 99.7 2.7E-18 5.9E-23 188.6 6.4 182 78-387 318-509 (530)
324 TIGR00956 3a01205 Pleiotropic 99.7 3.3E-18 7.2E-23 205.0 7.3 192 91-387 73-285 (1394)
325 PRK11819 putative ABC transpor 99.7 4.8E-18 1E-22 187.5 6.7 186 77-387 322-516 (556)
326 COG0396 sufC Cysteine desulfur 99.7 7.6E-18 1.7E-22 158.9 6.9 200 79-386 3-218 (251)
327 cd03216 ABC_Carb_Monos_I This 99.7 4.4E-18 9.4E-23 158.0 5.2 54 80-136 1-62 (163)
328 COG4172 ABC-type uncharacteriz 99.7 1.1E-17 2.4E-22 168.5 8.4 205 76-386 273-500 (534)
329 COG4172 ABC-type uncharacteriz 99.7 9.1E-18 2E-22 169.1 6.5 207 77-386 4-231 (534)
330 PLN03140 ABC transporter G fam 99.7 2.2E-17 4.9E-22 197.4 10.6 189 91-386 177-411 (1470)
331 PRK11147 ABC transporter ATPas 99.7 8.8E-18 1.9E-22 188.0 6.7 185 77-386 317-510 (635)
332 TIGR00957 MRP_assoc_pro multi 99.7 9.3E-18 2E-22 203.2 7.0 201 78-387 1283-1493(1522)
333 PTZ00243 ABC transporter; Prov 99.7 1.1E-17 2.3E-22 202.4 7.1 201 78-387 1307-1518(1560)
334 PRK13409 putative ATPase RIL; 99.7 7.7E-18 1.7E-22 185.9 5.4 182 77-387 338-528 (590)
335 TIGR01194 cyc_pep_trnsptr cycl 99.7 9.8E-18 2.1E-22 185.0 6.0 195 78-387 336-544 (555)
336 COG4133 CcmA ABC-type transpor 99.7 6.1E-18 1.3E-22 154.8 2.0 179 80-371 3-189 (209)
337 TIGR00954 3a01203 Peroxysomal 99.7 4E-17 8.7E-22 183.1 8.9 193 78-387 450-652 (659)
338 PRK10636 putative ABC transpor 99.7 4.6E-18 1E-22 190.0 1.1 211 80-387 2-220 (638)
339 PRK10522 multidrug transporter 99.7 2E-17 4.3E-22 182.4 6.1 193 78-387 321-523 (547)
340 PRK10636 putative ABC transpor 99.7 2.3E-17 4.9E-22 184.5 6.5 182 77-387 310-501 (638)
341 cd03237 ABC_RNaseL_inhibitor_d 99.7 2.3E-17 4.9E-22 163.3 5.1 159 103-387 29-190 (246)
342 TIGR01271 CFTR_protein cystic 99.7 3.3E-17 7.2E-22 197.9 7.6 201 78-387 1216-1425(1490)
343 cd03291 ABCC_CFTR1 The CFTR su 99.7 7.8E-17 1.7E-21 162.4 8.9 188 75-386 35-231 (282)
344 COG4618 ArpD ABC-type protease 99.7 4.3E-17 9.3E-22 168.7 6.5 195 74-374 329-534 (580)
345 COG4778 PhnL ABC-type phosphon 99.7 4E-17 8.7E-22 146.7 5.0 166 79-337 4-189 (235)
346 cd03236 ABC_RNaseL_inhibitor_d 99.7 2.3E-17 5E-22 164.0 3.3 191 83-387 4-213 (255)
347 TIGR03771 anch_rpt_ABC anchore 99.7 4.9E-17 1.1E-21 158.8 5.5 169 103-386 10-186 (223)
348 COG4107 PhnK ABC-type phosphon 99.6 1.4E-16 3E-21 143.7 4.5 198 77-375 4-215 (258)
349 COG4167 SapF ABC-type antimicr 99.6 1.4E-16 3.1E-21 144.7 4.6 183 78-369 3-207 (267)
350 COG4608 AppF ABC-type oligopep 99.6 3.4E-16 7.3E-21 152.5 7.1 162 78-385 3-182 (268)
351 COG4586 ABC-type uncharacteriz 99.6 4.1E-17 8.9E-22 157.1 0.3 184 93-387 38-231 (325)
352 PLN03073 ABC transporter F fam 99.6 2.5E-16 5.5E-21 177.1 6.5 182 78-386 507-697 (718)
353 COG0488 Uup ATPase components 99.6 2.4E-16 5.3E-21 170.2 6.1 203 79-376 3-214 (530)
354 PLN03073 ABC transporter F fam 99.6 1.1E-16 2.4E-21 179.9 2.8 218 77-387 175-415 (718)
355 PRK11147 ABC transporter ATPas 99.6 4.2E-16 9.1E-21 174.5 7.0 213 79-386 3-226 (635)
356 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 6.3E-16 1.4E-20 140.4 5.5 50 80-129 1-58 (144)
357 PLN03232 ABC transporter C fam 99.6 1.2E-15 2.7E-20 184.6 7.7 191 78-387 613-813 (1495)
358 cd03238 ABC_UvrA The excision 99.6 1.4E-15 3E-20 142.5 6.1 76 292-386 84-161 (176)
359 PRK13409 putative ATPase RIL; 99.6 6.2E-16 1.4E-20 170.8 3.5 191 84-387 78-285 (590)
360 PF00005 ABC_tran: ABC transpo 99.6 1.2E-16 2.6E-21 143.5 -1.9 128 95-329 1-136 (137)
361 PLN03130 ABC transporter C fam 99.6 2.3E-15 5E-20 182.6 7.9 190 78-386 613-812 (1622)
362 cd03222 ABC_RNaseL_inhibitor T 99.6 1.5E-15 3.2E-20 142.4 4.4 74 296-387 72-146 (177)
363 cd00267 ABC_ATPase ABC (ATP-bi 99.6 1.7E-15 3.6E-20 139.6 4.5 52 82-136 2-61 (157)
364 COG1134 TagH ABC-type polysacc 99.6 1.5E-15 3.3E-20 145.2 3.1 175 90-387 38-221 (249)
365 KOG0059|consensus 99.6 1.9E-15 4.1E-20 174.3 4.5 191 78-376 563-762 (885)
366 PRK15177 Vi polysaccharide exp 99.5 1.7E-15 3.7E-20 146.8 3.4 75 292-386 101-176 (213)
367 TIGR00957 MRP_assoc_pro multi 99.5 4.7E-15 1E-19 179.9 7.2 188 79-387 636-835 (1522)
368 TIGR01271 CFTR_protein cystic 99.5 1.3E-14 2.9E-19 175.5 7.2 185 79-387 428-621 (1490)
369 COG1101 PhnK ABC-type uncharac 99.5 3.3E-15 7.2E-20 139.5 1.3 79 91-182 18-106 (263)
370 COG5265 ATM1 ABC-type transpor 99.5 2.4E-15 5.2E-20 152.7 0.2 93 77-183 260-361 (497)
371 cd03273 ABC_SMC2_euk Eukaryoti 99.5 4.1E-14 8.9E-19 140.7 6.0 208 80-376 6-233 (251)
372 COG0488 Uup ATPase components 99.4 8.9E-14 1.9E-18 150.4 7.2 183 76-387 318-510 (530)
373 PTZ00243 ABC transporter; Prov 99.4 6.6E-14 1.4E-18 169.7 6.8 179 87-387 668-855 (1560)
374 COG4138 BtuD ABC-type cobalami 99.4 4.3E-13 9.3E-18 121.4 7.2 182 80-373 4-193 (248)
375 KOG0054|consensus 99.4 2.7E-13 5.8E-18 157.9 5.3 160 77-331 1136-1305(1381)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.4 5E-14 1.1E-18 136.3 -1.7 77 80-182 6-83 (212)
377 KOG0054|consensus 99.3 7E-13 1.5E-17 154.4 6.3 179 76-374 515-705 (1381)
378 cd03270 ABC_UvrA_I The excisio 99.3 1.2E-12 2.6E-17 128.1 4.2 89 279-386 121-211 (226)
379 cd03272 ABC_SMC3_euk Eukaryoti 99.3 3.7E-12 8.1E-17 125.9 4.5 87 290-392 153-239 (243)
380 cd03278 ABC_SMC_barmotin Barmo 99.2 4.3E-12 9.4E-17 121.4 4.7 80 291-390 109-192 (197)
381 KOG0062|consensus 99.2 3.7E-12 8.1E-17 132.5 4.2 152 201-376 329-543 (582)
382 KOG2655|consensus 99.2 8.9E-12 1.9E-16 126.6 6.6 108 315-433 17-131 (366)
383 KOG0927|consensus 99.2 4.7E-12 1E-16 132.5 4.2 53 77-129 387-448 (614)
384 KOG0066|consensus 99.2 1.9E-11 4.1E-16 124.5 4.4 69 56-125 564-639 (807)
385 cd03279 ABC_sbcCD SbcCD and ot 99.1 2.7E-11 5.8E-16 117.4 4.7 85 291-387 119-207 (213)
386 cd03271 ABC_UvrA_II The excisi 99.1 1.5E-11 3.3E-16 122.1 1.3 93 278-386 152-244 (261)
387 COG4615 PvdE ABC-type sideroph 99.1 1.8E-11 4E-16 123.6 0.1 84 77-167 320-412 (546)
388 cd00820 PEPCK_HprK Phosphoenol 99.1 1.3E-10 2.7E-15 99.0 4.9 71 92-182 2-78 (107)
389 cd03240 ABC_Rad50 The catalyti 99.1 1.7E-10 3.7E-15 111.1 6.1 78 292-387 112-196 (204)
390 KOG0065|consensus 99.1 6.5E-10 1.4E-14 127.4 11.4 164 92-362 128-310 (1391)
391 COG5019 CDC3 Septin family pro 99.0 2.5E-10 5.3E-15 115.3 6.7 109 314-433 18-135 (373)
392 COG4178 ABC-type uncharacteriz 99.0 2E-10 4.2E-15 124.3 6.2 155 77-337 390-551 (604)
393 KOG0927|consensus 99.0 1.3E-10 2.7E-15 122.0 4.0 52 74-125 70-127 (614)
394 cd03275 ABC_SMC1_euk Eukaryoti 99.0 2.4E-10 5.2E-15 113.4 5.7 80 292-386 152-231 (247)
395 KOG0060|consensus 99.0 9.1E-10 2E-14 116.4 7.4 160 78-331 432-600 (659)
396 KOG1547|consensus 99.0 4.6E-10 9.9E-15 106.4 4.6 108 315-433 42-157 (336)
397 COG1129 MglA ABC-type sugar tr 98.9 2.2E-09 4.8E-14 114.0 9.5 198 77-386 261-474 (500)
398 cd03283 ABC_MutS-like MutS-lik 98.9 1.9E-09 4.1E-14 103.3 6.8 66 92-182 14-83 (199)
399 COG1245 Predicted ATPase, RNas 98.9 9.3E-10 2E-14 113.3 3.4 158 201-387 370-530 (591)
400 COG4170 SapD ABC-type antimicr 98.9 2.5E-09 5.5E-14 99.8 5.2 76 292-386 155-232 (330)
401 PF00735 Septin: Septin; Inte 98.8 2.3E-09 4.9E-14 108.0 4.7 107 316-433 1-115 (281)
402 cd03276 ABC_SMC6_euk Eukaryoti 98.8 5.1E-09 1.1E-13 100.3 6.1 81 289-388 103-190 (198)
403 PRK00635 excinuclease ABC subu 98.8 4.2E-09 9.2E-14 126.5 6.8 82 289-386 803-884 (1809)
404 COG3845 ABC-type uncharacteriz 98.7 7.9E-08 1.7E-12 100.6 10.7 203 76-386 254-476 (501)
405 KOG3859|consensus 98.7 8.8E-09 1.9E-13 99.6 3.2 138 315-463 38-202 (406)
406 KOG2355|consensus 98.7 2.2E-08 4.7E-13 93.4 5.6 68 292-376 144-212 (291)
407 PRK00349 uvrA excinuclease ABC 98.6 5.8E-08 1.2E-12 111.9 8.8 92 276-386 811-905 (943)
408 TIGR00630 uvra excinuclease AB 98.6 1.8E-08 3.8E-13 115.9 4.4 94 277-386 810-903 (924)
409 COG0218 Predicted GTPase [Gene 98.6 1.8E-07 4E-12 87.7 9.3 121 264-400 26-153 (200)
410 KOG0064|consensus 98.5 5.4E-08 1.2E-12 102.0 4.0 81 79-182 481-568 (728)
411 TIGR03238 dnd_assoc_3 dnd syst 98.3 1.3E-07 2.7E-12 100.0 -0.0 44 92-138 19-69 (504)
412 COG2401 ABC-type ATPase fused 98.3 3.1E-07 6.7E-12 94.0 1.9 68 290-375 502-571 (593)
413 PF04548 AIG1: AIG1 family; I 98.2 7.2E-06 1.6E-10 79.4 9.8 64 263-335 1-64 (212)
414 TIGR03594 GTPase_EngA ribosome 98.2 7.2E-05 1.6E-09 80.2 18.3 64 262-335 172-235 (429)
415 PF05049 IIGP: Interferon-indu 98.2 7.5E-06 1.6E-10 84.9 10.2 68 258-333 31-99 (376)
416 KOG0066|consensus 98.2 2.9E-06 6.3E-11 87.3 6.8 45 78-122 263-313 (807)
417 cd01853 Toc34_like Toc34-like 98.2 4.1E-06 8.8E-11 83.0 7.5 67 258-334 27-93 (249)
418 cd01850 CDC_Septin CDC/Septin. 98.1 2.6E-06 5.7E-11 85.8 5.0 107 316-433 1-116 (276)
419 cd03277 ABC_SMC5_euk Eukaryoti 98.1 3.2E-06 7E-11 81.9 5.1 67 290-373 121-193 (213)
420 PRK00093 GTP-binding protein D 98.1 8.1E-05 1.7E-09 80.1 16.4 63 262-334 173-235 (435)
421 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 7.5E-06 1.6E-10 78.2 6.9 64 263-335 1-64 (196)
422 PRK09518 bifunctional cytidyla 98.0 2.6E-05 5.6E-10 88.9 10.9 61 263-333 276-336 (712)
423 cd04104 p47_IIGP_like p47 (47- 98.0 3.3E-05 7.2E-10 73.8 9.0 65 263-334 2-66 (197)
424 PF03193 DUF258: Protein of un 97.9 4.8E-06 1E-10 76.4 2.2 64 264-333 37-100 (161)
425 COG0178 UvrA Excinuclease ATPa 97.9 1.2E-05 2.7E-10 88.7 5.5 87 283-387 810-896 (935)
426 TIGR00991 3a0901s02IAP34 GTP-b 97.9 0.00011 2.3E-09 74.5 11.6 84 240-333 8-99 (313)
427 PRK06002 fliI flagellum-specif 97.9 1.6E-05 3.4E-10 84.5 5.6 84 78-162 138-230 (450)
428 PRK00635 excinuclease ABC subu 97.9 1E-05 2.3E-10 98.0 4.8 86 278-377 1682-1767(1809)
429 PF01926 MMR_HSR1: 50S ribosom 97.8 3.5E-05 7.6E-10 66.8 5.9 62 265-336 2-63 (116)
430 TIGR03598 GTPase_YsxC ribosome 97.8 0.00014 3E-09 68.3 9.9 62 262-335 18-79 (179)
431 cd01855 YqeH YqeH. YqeH is an 97.8 3.5E-05 7.6E-10 73.1 5.4 61 263-330 128-190 (190)
432 PF13555 AAA_29: P-loop contai 97.7 2.8E-05 6.2E-10 59.4 2.6 17 103-119 27-43 (62)
433 cd01876 YihA_EngB The YihA (En 97.6 0.00021 4.6E-09 65.0 8.6 59 265-335 2-60 (170)
434 TIGR00993 3a0901s04IAP86 chlor 97.6 0.00019 4E-09 78.8 8.6 64 261-334 117-180 (763)
435 TIGR02858 spore_III_AA stage I 97.6 3.7E-05 8E-10 77.0 2.8 60 101-167 113-174 (270)
436 COG1116 TauB ABC-type nitrate/ 97.6 7E-05 1.5E-09 72.8 4.4 76 200-275 31-107 (248)
437 PRK12289 GTPase RsgA; Reviewed 97.5 0.00012 2.5E-09 76.2 5.6 63 264-332 174-236 (352)
438 TIGR03596 GTPase_YlqF ribosome 97.5 0.0002 4.3E-09 72.3 7.0 57 262-331 118-174 (276)
439 COG1160 Predicted GTPases [Gen 97.5 0.00038 8.3E-09 73.1 9.1 62 262-333 178-239 (444)
440 COG1162 Predicted GTPases [Gen 97.5 0.00012 2.5E-09 73.5 5.1 63 264-332 166-228 (301)
441 PRK12288 GTPase RsgA; Reviewed 97.5 0.00013 2.8E-09 75.8 5.6 63 264-332 207-269 (347)
442 PRK10078 ribose 1,5-bisphospho 97.5 6.8E-05 1.5E-09 71.0 3.1 22 102-123 5-26 (186)
443 TIGR00157 ribosome small subun 97.5 0.0002 4.2E-09 71.0 6.4 62 264-332 122-183 (245)
444 cd03284 ABC_MutS1 MutS1 homolo 97.5 9E-05 1.9E-09 72.0 3.5 67 92-182 18-89 (216)
445 cd01857 HSR1_MMR1 HSR1/MMR1. 97.4 0.00018 3.8E-09 64.9 5.1 55 264-331 85-139 (141)
446 cd01861 Rab6 Rab6 subfamily. 97.4 0.00046 9.9E-09 62.9 7.2 59 263-330 1-59 (161)
447 PRK09518 bifunctional cytidyla 97.4 0.00097 2.1E-08 76.2 10.9 61 263-333 451-511 (712)
448 PRK11545 gntK gluconate kinase 97.4 3E-05 6.6E-10 71.8 -1.1 27 105-136 1-27 (163)
449 cd03239 ABC_SMC_head The struc 97.3 7.1E-05 1.5E-09 70.4 1.3 108 266-388 26-172 (178)
450 PRK09825 idnK D-gluconate kina 97.3 4.2E-05 9.2E-10 71.8 -0.2 29 103-136 7-35 (176)
451 cd00154 Rab Rab family. Rab G 97.3 0.00059 1.3E-08 61.3 7.2 59 263-330 1-59 (159)
452 cd01858 NGP_1 NGP-1. Autoanti 97.3 0.00031 6.7E-09 64.5 5.2 25 262-286 102-126 (157)
453 cd04163 Era Era subfamily. Er 97.3 0.00093 2E-08 60.5 8.4 63 263-335 4-66 (168)
454 cd03227 ABC_Class2 ABC-type Cl 97.3 4.4E-05 9.5E-10 70.6 -0.5 99 265-376 24-145 (162)
455 smart00175 RAB Rab subfamily o 97.3 0.00069 1.5E-08 61.7 7.4 59 263-330 1-59 (164)
456 cd01864 Rab19 Rab19 subfamily. 97.3 0.00067 1.4E-08 62.3 7.2 60 262-330 3-62 (165)
457 COG1159 Era GTPase [General fu 97.3 0.00053 1.2E-08 68.3 6.5 59 265-333 9-67 (298)
458 cd04119 RJL RJL (RabJ-Like) su 97.3 0.00071 1.5E-08 61.8 7.1 59 263-330 1-59 (168)
459 COG3596 Predicted GTPase [Gene 97.2 0.00025 5.3E-09 69.8 3.7 66 262-337 39-104 (296)
460 cd01868 Rab11_like Rab11-like. 97.2 0.00087 1.9E-08 61.4 7.2 60 262-330 3-62 (165)
461 cd01130 VirB11-like_ATPase Typ 97.2 0.00033 7.2E-09 66.3 4.4 28 102-129 28-57 (186)
462 TIGR00767 rho transcription te 97.2 0.00042 9.1E-09 72.5 5.2 46 76-121 127-190 (415)
463 cd01860 Rab5_related Rab5-rela 97.2 0.001 2.2E-08 60.7 7.1 60 262-330 1-60 (163)
464 PRK00454 engB GTP-binding prot 97.2 0.0011 2.5E-08 62.5 7.7 61 262-334 24-84 (196)
465 cd00881 GTP_translation_factor 97.2 0.00084 1.8E-08 62.7 6.6 67 264-332 1-74 (189)
466 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.2 0.0011 2.3E-08 61.0 7.2 59 263-330 3-61 (166)
467 cd01862 Rab7 Rab7 subfamily. 97.2 0.0011 2.3E-08 61.1 7.1 59 263-330 1-59 (172)
468 cd01866 Rab2 Rab2 subfamily. 97.2 0.0012 2.5E-08 61.1 7.3 60 262-330 4-63 (168)
469 TIGR03597 GTPase_YqeH ribosome 97.2 0.00076 1.6E-08 70.7 6.7 63 263-333 155-217 (360)
470 cd04178 Nucleostemin_like Nucl 97.2 0.00058 1.3E-08 63.9 5.2 56 262-330 117-172 (172)
471 cd04113 Rab4 Rab4 subfamily. 97.2 0.0012 2.6E-08 60.2 7.2 59 263-330 1-59 (161)
472 KOG0062|consensus 97.1 0.00028 6.1E-09 74.6 3.2 106 75-208 358-473 (582)
473 cd04164 trmE TrmE (MnmE, ThdF, 97.1 0.00097 2.1E-08 60.1 6.4 63 263-335 2-64 (157)
474 PRK07196 fliI flagellum-specif 97.1 0.00022 4.7E-09 75.8 2.3 82 92-180 143-234 (434)
475 TIGR00231 small_GTP small GTP- 97.1 0.0014 2.9E-08 58.5 7.2 59 263-330 2-60 (161)
476 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.00038 8.3E-09 66.6 3.7 46 319-375 108-154 (200)
477 cd03282 ABC_MSH4_euk MutS4 hom 97.1 0.00045 9.7E-09 66.5 4.0 30 91-120 15-50 (204)
478 cd01897 NOG NOG1 is a nucleola 97.1 0.0011 2.4E-08 60.8 6.2 58 264-332 2-59 (168)
479 cd00877 Ran Ran (Ras-related n 97.1 0.0016 3.6E-08 60.1 7.3 60 263-331 1-60 (166)
480 cd01884 EF_Tu EF-Tu subfamily. 97.1 0.002 4.4E-08 61.4 8.1 68 262-331 2-76 (195)
481 COG1118 CysA ABC-type sulfate/ 97.0 0.00012 2.5E-09 73.0 -0.7 69 200-268 30-105 (345)
482 COG3839 MalK ABC-type sugar tr 97.0 0.00024 5.3E-09 72.8 1.6 71 200-270 31-105 (338)
483 cd04124 RabL2 RabL2 subfamily. 97.0 0.0019 4.1E-08 59.2 7.4 59 263-330 1-59 (161)
484 cd01867 Rab8_Rab10_Rab13_like 97.0 0.0015 3.3E-08 60.2 6.8 60 262-330 3-62 (167)
485 PRK04213 GTP-binding protein; 97.0 0.0011 2.4E-08 63.1 5.9 58 262-334 9-66 (201)
486 PRK00089 era GTPase Era; Revie 97.0 0.0027 5.8E-08 64.5 8.9 60 265-334 8-67 (292)
487 cd03243 ABC_MutS_homologs The 97.0 0.00046 9.9E-09 66.2 3.1 47 319-376 108-155 (202)
488 cd01865 Rab3 Rab3 subfamily. 97.0 0.0022 4.8E-08 59.0 7.5 60 263-331 2-61 (165)
489 TIGR02168 SMC_prok_B chromosom 97.0 0.0008 1.7E-08 81.1 5.7 17 103-119 27-43 (1179)
490 cd03280 ABC_MutS2 MutS2 homolo 97.0 0.00016 3.5E-09 69.2 -0.2 19 265-283 31-49 (200)
491 cd04123 Rab21 Rab21 subfamily. 97.0 0.0021 4.5E-08 58.3 7.0 59 263-330 1-59 (162)
492 PRK00098 GTPase RsgA; Reviewed 96.9 0.0014 3.1E-08 66.8 6.3 62 264-331 166-227 (298)
493 cd04115 Rab33B_Rab33A Rab33B/R 96.9 0.0025 5.4E-08 58.9 7.4 59 263-330 3-61 (170)
494 cd01863 Rab18 Rab18 subfamily. 96.9 0.002 4.4E-08 58.7 6.7 59 263-330 1-59 (161)
495 PRK08149 ATP synthase SpaL; Va 96.9 0.00077 1.7E-08 71.5 4.3 33 91-124 138-176 (428)
496 cd04106 Rab23_lke Rab23-like s 96.9 0.0026 5.7E-08 57.9 7.4 58 264-330 2-61 (162)
497 cd04122 Rab14 Rab14 subfamily. 96.9 0.0025 5.5E-08 58.5 7.3 60 262-330 2-61 (166)
498 cd01849 YlqF_related_GTPase Yl 96.9 0.0014 3E-08 60.0 5.4 56 262-330 100-155 (155)
499 cd04155 Arl3 Arl3 subfamily. 96.9 0.00086 1.9E-08 62.0 4.0 24 99-122 14-37 (173)
500 cd04116 Rab9 Rab9 subfamily. 96.9 0.003 6.5E-08 58.2 7.6 62 260-330 3-64 (170)
No 1
>KOG2655|consensus
Probab=100.00 E-value=3.4e-62 Score=490.74 Aligned_cols=298 Identities=42% Similarity=0.679 Sum_probs=244.6
Q ss_pred CeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 242 DIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 242 ~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
+|||+++|+|++++++|+||.|++||+|+||+|||||||+||++++..+..++.++....+++.|....+.++|+|++++
T Consensus 1 ~vg~~~lP~q~~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~ 80 (366)
T KOG2655|consen 1 YVGFANLPNQVHRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLN 80 (366)
T ss_pred CCccccChHHHHHHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEe
Confidence 58999999999999999999999999999999999999999999988887778888888889999999999999999999
Q ss_pred EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceee----------------ccccchhhhh-cccceeE
Q psy91 322 LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTI----------------EKKSMDIEER-GVKLRLT 384 (541)
Q Consensus 322 L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i----------------~~~~~di~~~-~l~~rvn 384 (541)
|+|+|||||||.++|+.||.||++||++||++||.+|++..|+.+. .+.++|++.| +++.+||
T Consensus 81 LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~vN 160 (366)
T KOG2655|consen 81 LTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKVN 160 (366)
T ss_pred eEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999998774322 2467899886 7999999
Q ss_pred EEcCCCCCCCCCcHHHH---HHHHHHHHHHhhhcc---Cccc--c-----------cccccccchhhh-----hhhccCC
Q psy91 385 VVDTPGFGDSINSEESW---RACCSYIDDQFRQYF---NDES--G-----------LNRKNIVDNRFA-----TNRHRNN 440 (541)
Q Consensus 385 vIpvi~k~D~lt~~e~~---~~i~~~i~~~~~~~~---~~e~--~-----------~~~~~i~d~~v~-----~~~~~~~ 440 (541)
+||+|+|||+||.+|+. +.|.+.|..+-+..+ .+++ . .+...+..+.+. +.++++.
T Consensus 161 iIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~d~~~~~~~~~l~~~~PFAIigs~~~~e~~G~~~vrgR~ 240 (366)
T KOG2655|consen 161 LIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDESDEELKEEEQDLKSSIPFAIIGSNTEIEEKGKKRVRGRK 240 (366)
T ss_pred ccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcchhhhHHHHHHHhhcCCeEEEecCceeecCCceEeecee
Confidence 99999999999999983 356666665433222 2221 0 011122222211 2255668
Q ss_pred CCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccCCc----ccccC-CCCC----CCCch
Q psy91 441 APT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDR----GKLKK-DSAP----DGLIT 510 (541)
Q Consensus 441 ~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~~~----~~~~~-~~~~----~~~~~ 510 (541)
||| +|+|||++||||.+||+|||+|||+||+++|+++||||||+++|+......+. +++.. +..+ ..++.
T Consensus 241 YpWG~veien~~h~DF~~Lr~~Li~thl~dLk~~T~~~~YEnYR~~~L~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 320 (366)
T KOG2655|consen 241 YPWGTVEIENPEHCDFKKLRNLLIRTHLEDLKDTTNNLLYENYRTEKLEGLLYKGENGEHEARLKNDELALEKVITQKVK 320 (366)
T ss_pred cCCceeeccCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccCCchhhhhhhcccchhhHHHHhhhhh
Confidence 999 99999999999999999999999999999999999999999999998865532 23333 2222 24555
Q ss_pred hhHHHhhhchHHH-HHHHHHHHHHHHhHhh
Q psy91 511 ETDRLLLEKDEEL-VKSTIIISALNAPKQQ 539 (541)
Q Consensus 511 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 539 (541)
|++..+++++++| |+|++|+++|++|+++
T Consensus 321 e~~~~~~~~e~~l~~~~~e~~~~l~~~~~~ 350 (366)
T KOG2655|consen 321 EKEDRLRQEEEELIRRHQEMKKKLEAQMQE 350 (366)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777666 9999999999999985
No 2
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.2e-56 Score=442.41 Aligned_cols=298 Identities=33% Similarity=0.569 Sum_probs=234.9
Q ss_pred CCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC-CCCcceEEeeeEEEeeecCee
Q psy91 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND-RQGKTTTIEKKSMDIEERGVK 319 (541)
Q Consensus 241 ~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~-g~~q~v~I~~~~~~i~e~gv~ 319 (541)
.+||+.++|.|++++..++|+.|++||+|++|+|||||+|+||.+.+..+.......+ +..+++.|....+.++|+|++
T Consensus 2 ~~vgi~~l~~~r~~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~ 81 (373)
T COG5019 2 GYVGISNLPNQRHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFH 81 (373)
T ss_pred CcCCcCcchHHHHHHHHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeE
Confidence 5789999999999999999999999999999999999999999986555432222222 367899999999999999999
Q ss_pred eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceee-----------------ccccchhhhh-cccc
Q psy91 320 LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTI-----------------EKKSMDIEER-GVKL 381 (541)
Q Consensus 320 ~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i-----------------~~~~~di~~~-~l~~ 381 (541)
++|+|+|||||||.++|+.||.||++||++||++||.+|++..|+..+ ...++||+.| +++.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~ 161 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK 161 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998876221 2467888885 7999
Q ss_pred eeEEEcCCCCCCCCCcHHH--H-HHHHHHHHHHhhhccC----cccc---c----------ccccccchhhh----hhhc
Q psy91 382 RLTVVDTPGFGDSINSEES--W-RACCSYIDDQFRQYFN----DESG---L----------NRKNIVDNRFA----TNRH 437 (541)
Q Consensus 382 rvnvIpvi~k~D~lt~~e~--~-~~i~~~i~~~~~~~~~----~e~~---~----------~~~~i~d~~v~----~~~~ 437 (541)
+||+||||||||+||.+|+ + +.|.+.+..+-...|. |+.. . +...|.++... +..+
T Consensus 162 ~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e~~~~e~~e~~~~l~~~~PFAII~S~~~~~~~~~~vr 241 (373)
T COG5019 162 RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPYDPEDDEDESLEENQDLRSLIPFAIIGSNTEIENGGEQVR 241 (373)
T ss_pred ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeCCCCccccchhhHHHHHHHhhcCCeEEEeccceeccCCceee
Confidence 9999999999999999998 2 3555556554333332 2211 0 01112221111 3356
Q ss_pred cCCCCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccCC-------cccccC-CCCC---
Q psy91 438 RNNAPT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGD-------RGKLKK-DSAP--- 505 (541)
Q Consensus 438 ~~~~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~~-------~~~~~~-~~~~--- 505 (541)
+|.||| +|+|||++||||..||++||++||+||++.|++.|||+||+++|.......+ .+++.. +..+
T Consensus 242 gR~YpWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~T~~~~YE~YR~e~L~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 321 (373)
T COG5019 242 GRKYPWGVVEIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKK 321 (373)
T ss_pred eeccCCcceecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhhhhccHHHHhHHHHHHHHH
Confidence 778999 9999999999999999999999999999999999999999999998775432 111111 0011
Q ss_pred -CCCchhhHHHhhhchHHH-HHHHHHHHHHHHhHh
Q psy91 506 -DGLITETDRLLLEKDEEL-VKSTIIISALNAPKQ 538 (541)
Q Consensus 506 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 538 (541)
.+++.++|+.+++.|++| .++++|.++|.++-+
T Consensus 322 ~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~ 356 (373)
T COG5019 322 FTEKIREKEKRLEELEQNLIEERKELNSKLEEIQK 356 (373)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 166788999999999998 777777777766544
No 3
>KOG1547|consensus
Probab=100.00 E-value=2.5e-54 Score=402.46 Aligned_cols=254 Identities=37% Similarity=0.587 Sum_probs=201.5
Q ss_pred CCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCe
Q psy91 239 PYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV 318 (541)
Q Consensus 239 ~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv 318 (541)
..+||||.+.-+|+.++++|.||.||+||||.||+||||++|+||.+.+......+.......+|++|......|+|+||
T Consensus 23 ~lgyvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 23 LLGYVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ccccccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecce
Confidence 35899999999999999999999999999999999999999999998866554444444578999999999999999999
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcce-----------------eeccccchhhh-hccc
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTT-----------------TIEKKSMDIEE-RGVK 380 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~-----------------~i~~~~~di~~-~~l~ 380 (541)
+++|+++|||||||.+||..||+||.+||.+|+.+||++|..+.|.- -..++++||+. +|++
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt 182 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT 182 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh
Confidence 99999999999999999999999999999999999999996544321 12357889998 5899
Q ss_pred ceeEEEcCCCCCCCCCcHHH--H-HHHHHHHHHH-hhhccCccccc-------ccc---cc-----c-chhhh---hhhc
Q psy91 381 LRLTVVDTPGFGDSINSEES--W-RACCSYIDDQ-FRQYFNDESGL-------NRK---NI-----V-DNRFA---TNRH 437 (541)
Q Consensus 381 ~rvnvIpvi~k~D~lt~~e~--~-~~i~~~i~~~-~~~~~~~e~~~-------~~~---~i-----~-d~~v~---~~~~ 437 (541)
.-|||||||+|+|+||.+|. | +.|.+.+..+ ++-|..++... |.+ .| . |+.+. +.+.
T Consensus 183 ~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~~iPFAVVGsd~e~~vnG~~vl 262 (336)
T KOG1547|consen 183 EVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRESIPFAVVGSDKEIQVNGRRVL 262 (336)
T ss_pred hhheeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHhhCCeEEecccceEEEcCeEee
Confidence 99999999999999999886 2 2333333222 22232222111 110 01 0 11110 2222
Q ss_pred cCCCCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccc
Q psy91 438 RNNAPT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQ 492 (541)
Q Consensus 438 ~~~~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~ 492 (541)
++.-+| ++||||.+||||++||++||+||||||||.|+.+|||+||+.+|..+..
T Consensus 263 GRktrWg~IeVen~nhCeF~~LRdfliRtHlQdlke~Ts~iHyE~yR~krLn~~~~ 318 (336)
T KOG1547|consen 263 GRKTRWGIIEVENLNHCEFVLLRDFLIRTHLQDLKETTSNIHYETYRAKRLNELKE 318 (336)
T ss_pred ccccccceEEecccccchhHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHhhhcC
Confidence 334455 9999999999999999999999999999999999999999999998653
No 4
>KOG3859|consensus
Probab=100.00 E-value=3.1e-51 Score=388.82 Aligned_cols=253 Identities=32% Similarity=0.518 Sum_probs=210.0
Q ss_pred CCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec
Q psy91 237 SIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER 316 (541)
Q Consensus 237 ~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~ 316 (541)
-...++|||.++|+|+..+++..||.||||++|++|+|||||+++||++.+-.. .|.+....|.+...++.+.|.
T Consensus 17 l~l~GHvGFdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~-----p~~H~~~~V~L~~~TyelqEs 91 (406)
T KOG3859|consen 17 LQLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESE-----PSTHTLPNVKLQANTYELQES 91 (406)
T ss_pred eeecCccCcccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCC-----CCccCCCCceeecchhhhhhc
Confidence 356789999999999999999999999999999999999999999999884322 344556778899999999999
Q ss_pred CeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCccee------------------eccccchhhhh-
Q psy91 317 GVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTT------------------IEKKSMDIEER- 377 (541)
Q Consensus 317 gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~------------------i~~~~~di~~~- 377 (541)
+|+++|+|+||-||||.+|...+++||++|||.||+.||++|.++.|... +.++.+|+..+
T Consensus 92 nvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk 171 (406)
T KOG3859|consen 92 NVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMK 171 (406)
T ss_pred CeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877521 23466787764
Q ss_pred cccceeEEEcCCCCCCCCCcHHHHH---HHHHHHHHH---hhhccCccccccc-----------ccccchhhh----hhh
Q psy91 378 GVKLRLTVVDTPGFGDSINSEESWR---ACCSYIDDQ---FRQYFNDESGLNR-----------KNIVDNRFA----TNR 436 (541)
Q Consensus 378 ~l~~rvnvIpvi~k~D~lt~~e~~~---~i~~~i~~~---~~~~~~~e~~~~~-----------~~i~d~~v~----~~~ 436 (541)
.+..+|||||+|+|+|++..+|+.+ .|++.+..+ +.+|..|+..... ..+.+.... +.+
T Consensus 172 ~LdskVNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPtDdetva~~N~~mn~~lPFAVvGSte~vKvgnkmv 251 (406)
T KOG3859|consen 172 KLDSKVNIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPTDDETVAKANSEMNHSLPFAVVGSTEEVKVGNKMV 251 (406)
T ss_pred HHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCceeeeccchHHHHHHHHHHhhcCCceeEecchHhhhhhhhhh
Confidence 7999999999999999999999832 466555543 4555555443221 122222111 334
Q ss_pred ccCCCCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccC
Q psy91 437 HRNNAPT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG 494 (541)
Q Consensus 437 ~~~~~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~ 494 (541)
+.|.||| +|.|||+.||||++||+|||+++|+||++.||..|||.||..+|.+|+...
T Consensus 252 raRqyPwG~v~vENE~HCDFVKLREmLirtNmedlReqTHtrhYElyRr~kL~~Mgf~d 310 (406)
T KOG3859|consen 252 KARQYPWGTVQVENELHCDFVKLREMLIRTNMEDLREQTHTRHYELYRRCKLEEMGFKD 310 (406)
T ss_pred hhccCCCCceeecchhhhHHHHHHHHHccccHHHHhhhccccchHHHHHHHHHHcCCcc
Confidence 5668999 999999999999999999999999999999999999999999999998543
No 5
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=100.00 E-value=9e-48 Score=385.07 Aligned_cols=236 Identities=39% Similarity=0.671 Sum_probs=172.4
Q ss_pred hccceeeEeccCCcchhHHHHhhhcccccCCCC-CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccch
Q psy91 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR-KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 259 ~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~-~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~ 337 (541)
+|+.|+|||+|++|+|||||||+||...+.... ..+..+....+++.|....+.++|+|++++|+|+|||||||.+++.
T Consensus 1 kg~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~ 80 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNS 80 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccch
Confidence 689999999999999999999999998866553 2233344667788999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhcccCccee-----------e-----ccccchhhhh-cccceeEEEcCCCCCCCCCcHHH
Q psy91 338 ESWRACCSYIDDQFRQYFNDENRQGKTTT-----------I-----EKKSMDIEER-GVKLRLTVVDTPGFGDSINSEES 400 (541)
Q Consensus 338 ~~~~~i~~yI~~~~~~~l~~e~~~~rt~~-----------i-----~~~~~di~~~-~l~~rvnvIpvi~k~D~lt~~e~ 400 (541)
.||.+|++||++||.+||.+|.+..|... + ..+++||+.+ +++.+|||||+|+|||+||.+|+
T Consensus 81 ~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 81 DCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTSEEEEEESTGGGS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccccEEeEEecccccCHHHH
Confidence 99999999999999999999988766311 1 2347788875 79999999999999999999998
Q ss_pred ---HHHHHHHHHHHhhhccC---cccc-------------cccccccchhhh-----hhhccCCCCc-ccccCCCCcccH
Q psy91 401 ---WRACCSYIDDQFRQYFN---DESG-------------LNRKNIVDNRFA-----TNRHRNNAPT-PSQVENPKHSDF 455 (541)
Q Consensus 401 ---~~~i~~~i~~~~~~~~~---~e~~-------------~~~~~i~d~~v~-----~~~~~~~~p~-~veven~~h~DF 455 (541)
.+.|.+.+.+.-..++. ++.. .+...+..+... +..++|.||| +|||||++||||
T Consensus 161 ~~~k~~i~~~l~~~~I~~f~f~~~~~~~~e~~~~~~~~~~~PFavi~s~~~~~~~~g~~~~gR~YpWG~vev~n~~hsDF 240 (281)
T PF00735_consen 161 QAFKQRIREDLEENNIKIFDFPEDDDDDEEIEENQKIRSMLPFAVIGSNTEIENSNGKRVRGRKYPWGTVEVENPEHSDF 240 (281)
T ss_dssp HHHHHHHHHHHHHTT--S----------HCHHHHHHHHHC-SEEE---SSEEEE-SSSEEEEEEETTEEEETT-TTTSSH
T ss_pred HHHHHHHHHHHHHcCceeeccccccccccccccccccccceeeEEEecceeeeccCCcEEeeeecCCccccccccccccH
Confidence 23555555543332221 1111 011122222211 2344568999 999999999999
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccC
Q psy91 456 NKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRG 494 (541)
Q Consensus 456 ~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~ 494 (541)
.+||++||++||+|||+.|+++|||+||+++|++....+
T Consensus 241 ~~Lr~~Ll~~~l~dL~~~T~~~~YE~yR~~~L~~~~~~~ 279 (281)
T PF00735_consen 241 LKLRNLLLGTHLQDLKDSTENVHYENYRTEKLSSRKNKQ 279 (281)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHH----
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhchhcc
Confidence 999999999999999999999999999999999877543
No 6
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=100.00 E-value=1.3e-41 Score=341.00 Aligned_cols=232 Identities=41% Similarity=0.655 Sum_probs=176.6
Q ss_pred hccceeeEeccCCcchhHHHHhhhcccccCCCCCC-CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccch
Q psy91 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV-PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 259 ~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~-~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~ 337 (541)
+|+.|+|||+|++|+|||||+|+||...+...... ........+++.+......++++|+..+|+|+|||||||.+++.
T Consensus 1 ~g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~ 80 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS 80 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch
Confidence 58999999999999999999999998875543221 11223457788888888889999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhcccCcce------------eec-----cccchhhh-hcccceeEEEcCCCCCCCCCcHH
Q psy91 338 ESWRACCSYIDDQFRQYFNDENRQGKTT------------TIE-----KKSMDIEE-RGVKLRLTVVDTPGFGDSINSEE 399 (541)
Q Consensus 338 ~~~~~i~~yI~~~~~~~l~~e~~~~rt~------------~i~-----~~~~di~~-~~l~~rvnvIpvi~k~D~lt~~e 399 (541)
.+|++|++||++||..|+.++.+..|.. .+. ..+.|++. +.++..+++|++++|+|.++.++
T Consensus 81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~~e 160 (276)
T cd01850 81 DCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPEE 160 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCHHH
Confidence 9999999999999999999998665521 011 12344554 35666899999999999999777
Q ss_pred HH---HHHHHHHHHHhhhccC---cccc-------------cccccccchhhh----hhhccCCCCc-ccccCCCCcccH
Q psy91 400 SW---RACCSYIDDQFRQYFN---DESG-------------LNRKNIVDNRFA----TNRHRNNAPT-PSQVENPKHSDF 455 (541)
Q Consensus 400 ~~---~~i~~~i~~~~~~~~~---~e~~-------------~~~~~i~d~~v~----~~~~~~~~p~-~veven~~h~DF 455 (541)
+. +.+.+.++.+-..++. ++.. .+...+..+.+. +.+++|.||| +||||||+||||
T Consensus 161 ~~~~k~~i~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Pfavi~s~~~~~~~g~~~~~R~y~WG~~~v~n~~h~df 240 (276)
T cd01850 161 LKEFKQRIMEDIEEHNIKIYKFPEDEEDDETIEENKKLRSLIPFAVVGSNEEVEVNGKKVRGRKYPWGVVEVENEEHCDF 240 (276)
T ss_pred HHHHHHHHHHHHHHcCCceECCCCCcccHHHHHHHHhhccCCCcEEEecCceeecCCcEEEEecCCccEEeecCcccccH
Confidence 52 3445555544333332 1110 111122222221 3345678999 999999999999
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhc
Q psy91 456 NKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQI 490 (541)
Q Consensus 456 ~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~ 490 (541)
.+||++||++||+||++.|+++|||+||+++|..+
T Consensus 241 ~~Lr~~l~~~~~~~l~~~t~~~~Ye~yr~~~l~~~ 275 (276)
T cd01850 241 VKLRNLLIRTHLQDLKETTHNVHYENYRTEKLSSR 275 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999865
No 7
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=263.24 Aligned_cols=200 Identities=21% Similarity=0.243 Sum_probs=167.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|+++||++.||+..+|+|||++| +|+|||||||||||||| +..+++|+|+ ++|..+.... .....
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~---i~g~~~~~~~---~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT---VDGEDVGDKK---DILKL 75 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEE---ECCEeccchh---hHHHH
Confidence 578999999999999999999999 99999999999999999 7788999999 8886332211 34456
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
++.+|+|||+++||||+ ||.||+.++.. ..+.++.++.+.+..+|+.+||.+
T Consensus 76 R~~vGmVFQ~fnLFPHl------TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~--------------------- 128 (240)
T COG1126 76 RRKVGMVFQQFNLFPHL------TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD--------------------- 128 (240)
T ss_pred HHhcCeecccccccccc------hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh---------------------
Confidence 67899999999999999 99999999832 346678888889999999999875
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+.+|..+||||+|||+|+++
T Consensus 129 ----------------------------------------------------------ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 129 ----------------------------------------------------------KADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred ----------------------------------------------------------hhhhCccccCcHHHHHHHHHHH
Confidence 1234677899999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|++++.|||+.- ++..+-..+.+.+.+..+.+.|.++++|++.+.. .+..||.|.+
T Consensus 151 LaM------~P~vmLFDEPTSA-----------LDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr-~VadrviFmd 210 (240)
T COG1126 151 LAM------DPKVMLFDEPTSA-----------LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAR-EVADRVIFMD 210 (240)
T ss_pred HcC------CCCEEeecCCccc-----------CCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHH-HhhheEEEee
Confidence 999 9999999999654 2233444677778888889999999999988764 4888888876
No 8
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.2e-31 Score=244.23 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=162.7
Q ss_pred eeeecccccccccc-eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHRKS-VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~-iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
|.|++|+++|++.+ +|+||||.| -|+|||||||||||++| ..+|+.|.|+ ++|.++. .+.+......
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~---~~~~dl~-~l~~~~iP~L 77 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL---VNGHDLS-RLKGREIPFL 77 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEE---ECCeecc-cccccccchh
Confidence 78999999997544 999999999 89999999999999999 6689999999 8888553 3344455667
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++++|+||||+.|.++. ||+||++|+..-.+.+..+..+++.++|+.+||.+-
T Consensus 78 RR~IGvVFQD~rLL~~~------tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k--------------------- 130 (223)
T COG2884 78 RRQIGVVFQDFRLLPDR------TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHK--------------------- 130 (223)
T ss_pred hheeeeEeeeccccccc------hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchh---------------------
Confidence 88999999999999999 999999999555667788899999999999999761
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
....|..+|+|++|+++||++.
T Consensus 131 ----------------------------------------------------------~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 131 ----------------------------------------------------------ARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred ----------------------------------------------------------hhcCccccCchHHHHHHHHHHH
Confidence 1123567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 311 MDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+. +|.++|.||| |..|..... .+.+.|.+.++.+.|+++.+|+.++...
T Consensus 153 V~------~P~vLlADEPTGNLDp~~s~------------~im~lfeeinr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 153 VN------QPAVLLADEPTGNLDPDLSW------------EIMRLFEEINRLGTTVLMATHDLELVNR 202 (223)
T ss_pred cc------CCCeEeecCCCCCCChHHHH------------HHHHHHHHHhhcCcEEEEEeccHHHHHh
Confidence 99 9999999999 666554443 6788888999999999999999998764
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.7e-31 Score=254.27 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=156.7
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++++++.|+...+|+||||+| +|+||||||||||||+|+ ..++.|+|. +.|. .+ ...
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~---~~g~----~v-----~~p 70 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL---LDGR----PV-----TGP 70 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCc----cc-----CCC
Confidence 578999999999999999999999 999999999999999994 467788888 8787 22 233
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
...++||||++.|+|++ ||.+||.|+....+.++.+..+++..+|+.+||.+
T Consensus 71 ~~~~~~vFQ~~~LlPW~------Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~---------------------- 122 (248)
T COG1116 71 GPDIGYVFQEDALLPWL------TVLDNVALGLELRGKSKAEARERAKELLELVGLAG---------------------- 122 (248)
T ss_pred CCCEEEEeccCcccchh------hHHhhheehhhccccchHhHHHHHHHHHHHcCCcc----------------------
Confidence 45689999999999999 99999999944344566777778999999999987
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.+.+|..+|||++|||+|++++
T Consensus 123 ---------------------------------------------------------~~~~~P~qLSGGMrQRVaiARAL 145 (248)
T COG1116 123 ---------------------------------------------------------FEDKYPHQLSGGMRQRVAIARAL 145 (248)
T ss_pred ---------------------------------------------------------hhhcCccccChHHHHHHHHHHHH
Confidence 33456788999999999999999
Q ss_pred EEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++++||| |..|+.... .+.+.+.+.. +.+.|+++++|+++ |.-.++.||.++.
T Consensus 146 ~~------~P~lLLlDEPFgALDalTR~------------~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~ 205 (248)
T COG1116 146 AT------RPKLLLLDEPFGALDALTRE------------ELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLS 205 (248)
T ss_pred hc------CCCEEEEcCCcchhhHHHHH------------HHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEec
Confidence 99 9999999999 888776554 3344444443 34688999999876 3456777887763
No 10
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=4.1e-31 Score=250.83 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=166.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|+|+||++.|+++.+++++||+| +++|||||||||+|++| +..|++|+|+ ++|+ .+...+....+
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~---i~g~----~i~~~d~~~LR 74 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL---IDGE----DISDLDPVELR 74 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEE---ECCe----ecccCCHHHHH
Confidence 78999999999999999999999 99999999999999999 7889999999 9998 44444444567
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.+|||-|...||||+ ||.||+++-....++.++.+.++++++|.++||...
T Consensus 75 r~IGYviQqigLFPh~------Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~---------------------- 126 (309)
T COG1125 75 RKIGYVIQQIGLFPHL------TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPS---------------------- 126 (309)
T ss_pred HhhhhhhhhcccCCCc------cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHH----------------------
Confidence 7899999999999999 999999986444567888899999999999998630
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.|.+++|..+|||++||+.++++++
T Consensus 127 -------------------------------------------------------~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 127 -------------------------------------------------------EYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred -------------------------------------------------------HHhhcCchhcCcchhhHHHHHHHHh
Confidence 1567788999999999999999999
Q ss_pred EeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +|++++.||| |..|.++.. ++-+.+.+.. +.++|+++++|++| +..++..|+-+.+
T Consensus 152 a------dP~ilLMDEPFgALDpI~R~------------~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~ 210 (309)
T COG1125 152 A------DPPILLMDEPFGALDPITRK------------QLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD 210 (309)
T ss_pred c------CCCeEeecCCccccChhhHH------------HHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec
Confidence 8 9999999999 998888776 3444444443 45899999999988 4445666766654
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=2.2e-30 Score=263.26 Aligned_cols=197 Identities=19% Similarity=0.350 Sum_probs=158.5
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|++++|+++||+..+|+|||++| +|+||||||||||||+| +..|++|+|. ++|+ .+.+.+
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~---l~G~----~i~~lp-- 73 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL---LDGE----DITDVP-- 73 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCE----ECCCCC--
Confidence 35789999999999999999999999 89999999999999999 4578899999 9999 444433
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+|.+|+|||+++||||+ ||.|||+|+.. .....+.++.+++.++++++|+.+
T Consensus 74 p~kR~ig~VFQ~YALFPHl------tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~------------------- 128 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHM------TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG------------------- 128 (352)
T ss_pred hhhcccceeecCcccCCCC------cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-------------------
Confidence 4567899999999999999 99999999943 233455668889999999999976
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++++..+||||+|||+++
T Consensus 129 ------------------------------------------------------------~~~R~p~qLSGGQqQRVALA 148 (352)
T COG3842 129 ------------------------------------------------------------FADRKPHQLSGGQQQRVALA 148 (352)
T ss_pred ------------------------------------------------------------hhhhChhhhChHHHHHHHHH
Confidence 33456778999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
++++. +|+++++||| +..|. .+.+++...+.+..+ .+.|.++.+|+.+ +...++.++-|
T Consensus 149 RAL~~------~P~vLLLDEPlSaLD~------------kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~V 209 (352)
T COG3842 149 RALVP------EPKVLLLDEPLSALDA------------KLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAV 209 (352)
T ss_pred HHhhc------CcchhhhcCcccchhH------------HHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEE
Confidence 99999 9999999999 66553 333355555555543 4788999999866 33456666554
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
.
T Consensus 210 m 210 (352)
T COG3842 210 M 210 (352)
T ss_pred c
Confidence 3
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.6e-30 Score=247.33 Aligned_cols=192 Identities=21% Similarity=0.265 Sum_probs=150.4
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+++|++.|+.. .+|++|||+| ||+|||||||||||++| +..|++|.|+ ++|+++.........
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~---i~g~d~~~l~~~~~~ 78 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVL---INGKDLTKLSEKELA 78 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE---ECCEEcCcCCHHHHH
Confidence 4678999988643 6999999999 99999999999999999 6678999999 888744332222334
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.+|||||+++|+|.+ ||.|||.++....+.+.....+++..++..+|+.+
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~l------tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~------------------- 133 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDL------TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED------------------- 133 (226)
T ss_pred HHHHHhEEEECccCCCCCCC------CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChh-------------------
Confidence 45677899999999999999 99999998733333333345556666777777754
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
...+.++..+|||++|||+|+
T Consensus 134 -----------------------------------------------------------~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 134 -----------------------------------------------------------RLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred -----------------------------------------------------------hhccCCchhcCHHHHHHHHHH
Confidence 122345778999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhh
Q psy91 308 KKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEE 376 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~ 376 (541)
++++. +|+|++.||| |..|..+.. .+.+.|.+.++. +.++++++|+.++..
T Consensus 155 RAL~~------~P~iilADEPTgnLD~~t~~------------~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 155 RALIN------NPKIILADEPTGNLDSKTAK------------EVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred HHHhc------CCCeEEeeCccccCChHHHH------------HHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 99999 9999999999 666666555 667777777655 789999999988876
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.1e-30 Score=250.32 Aligned_cols=201 Identities=19% Similarity=0.253 Sum_probs=168.5
Q ss_pred eeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
|++++|++.|.. ..+|+||||+| +|||.||||||||+|++ +..|++|+|. ++|+++. .++...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~---v~G~di~-~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF---VDGQDLT-ALSEAE 77 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE---EcCEecc-cCChHH
Confidence 789999999986 36999999999 99999999999999999 8889999999 8887543 345556
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.+..++.+|++||+++|+... ||.+|++|+....+.++.++.+++.++++++||.+
T Consensus 78 Lr~~R~~IGMIFQhFnLLssr------TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~d------------------ 133 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSR------TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSD------------------ 133 (339)
T ss_pred HHHHHhhccEEeccccccccc------hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 667788999999999999999 99999999955566788999999999999999975
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..+++|.++||||+|+|.|
T Consensus 134 -------------------------------------------------------------k~~~yP~qLSGGQKQRVaI 152 (339)
T COG1135 134 -------------------------------------------------------------KADRYPAQLSGGQKQRVAI 152 (339)
T ss_pred -------------------------------------------------------------hhccCchhcCcchhhHHHH
Confidence 2345678899999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +|+++++|||+.-.+..... .+.+.|.+.++ .+-|+.+.+|.+|+. ++++.||-+
T Consensus 153 ARALa~------~P~iLL~DEaTSALDP~TT~-----------sIL~LL~~In~~lglTIvlITHEm~Vv-k~ic~rVav 214 (339)
T COG1135 153 ARALAN------NPKILLCDEATSALDPETTQ-----------SILELLKDINRELGLTIVLITHEMEVV-KRICDRVAV 214 (339)
T ss_pred HHHHhc------CCCEEEecCccccCChHHHH-----------HHHHHHHHHHHHcCCEEEEEechHHHH-HHHhhhheE
Confidence 999999 99999999996655444443 56666777654 478899999999965 457788777
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 215 m~ 216 (339)
T COG1135 215 LD 216 (339)
T ss_pred ee
Confidence 65
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=8.7e-29 Score=233.96 Aligned_cols=204 Identities=19% Similarity=0.230 Sum_probs=161.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|++++|+++||++.||+||||+| +|+||||||||||||+| +.+|++|+|+ +.|.++.. .......
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~---i~G~~i~~-ls~~~~~ 81 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL---IDGEDIPQ-LSEEELY 81 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE---EcCcchhc-cCHHHHH
Confidence 56899999999999999999999999 99999999999999999 5678999999 88885432 2222223
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++++|++||+.+||..+ ||+||++|... ....++....+.+...|+.+||.+.
T Consensus 82 ~ir~r~GvlFQ~gALFssl------tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~------------------ 137 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSL------TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGA------------------ 137 (263)
T ss_pred HHHhheeEEeecccccccc------chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChh------------------
Confidence 4456899999999999999 99999999832 2356777777888888999998751
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..+..|..+|||+++|+++|
T Consensus 138 ------------------------------------------------------------~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 138 ------------------------------------------------------------AADLYPSELSGGMRKRVALA 157 (263)
T ss_pred ------------------------------------------------------------hhhhCchhhcchHHHHHHHH
Confidence 12335778999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++.+. +|+|+++|||+.|.+.-... .|.+.+.+.++ .+-|+++.+|+++-. ..++.++.++
T Consensus 158 RAial------dPell~~DEPtsGLDPI~a~-----------~~~~LI~~L~~~lg~T~i~VTHDl~s~-~~i~Drv~~L 219 (263)
T COG1127 158 RAIAL------DPELLFLDEPTSGLDPISAG-----------VIDELIRELNDALGLTVIMVTHDLDSL-LTIADRVAVL 219 (263)
T ss_pred HHHhc------CCCEEEecCCCCCCCcchHH-----------HHHHHHHHHHHhhCCEEEEEECChHHH-HhhhceEEEE
Confidence 99998 99999999998887654443 44455544443 478899999987733 3477777776
No 15
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=8.1e-29 Score=250.49 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=159.2
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|+++||++.||+..+|+++|++| +|+||||||||||||+|+ ..+++|+|. ++|+ .++..+ ..
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~---i~g~----~vt~l~--P~ 73 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL---IDGR----DVTDLP--PE 73 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCE----ECCCCC--hh
Confidence 589999999999876999999999 999999999999999994 467899999 9998 444433 34
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
.|.+++|||+++|||++ ||++|++|+....+.++.+..+++.++.+.+++.+
T Consensus 74 ~R~iamVFQ~yALyPhm------tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~---------------------- 125 (338)
T COG3839 74 KRGIAMVFQNYALYPHM------TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH---------------------- 125 (338)
T ss_pred HCCEEEEeCCccccCCC------cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh----------------------
Confidence 56899999999999999 99999999955566778889999999999988876
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++++..+||||+|+|+|++++
T Consensus 126 ---------------------------------------------------------lL~r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 126 ---------------------------------------------------------LLNRKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred ---------------------------------------------------------HHhcCcccCChhhHHHHHHHHHH
Confidence 33456788999999999999999
Q ss_pred EEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|++.++||| ...|+ -+..+++..+....+ .+.|+++.+|+.. +.+.+..++-+..
T Consensus 149 Vr------~P~v~L~DEPlSnLDa------------~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~ 208 (338)
T COG3839 149 VR------KPKVFLLDEPLSNLDA------------KLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN 208 (338)
T ss_pred hc------CCCEEEecCchhHhhH------------HHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe
Confidence 99 9999999999 44443 233355555655543 4678889998854 5566777766654
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=232.75 Aligned_cols=192 Identities=20% Similarity=0.278 Sum_probs=153.3
Q ss_pred Cceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
..|+++||++.| +++.+|++|||+| |||||||||||||||+| +..++.|+|. ++|..+. ...+...+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~---~~g~~i~-~~~~k~lr 77 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL---FNGVQIT-KLKGKELR 77 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEE---ecccchh-ccchHHHH
Confidence 358999999999 7889999999999 99999999999999999 6678899999 8886332 23334455
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccc--------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.+++.+||+||+++|.+.+ +|.+||..+++.+. +..++....+-.+|+.+|+.+.
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~------sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~----------- 140 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRL------SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK----------- 140 (258)
T ss_pred HHHHhceeEeccCCccccc------HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------
Confidence 6678899999999999999 99999999865532 1223445556666777776431
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
.-.....+||||
T Consensus 141 --------------------------------------------------------------------A~qra~~LSGGQ 152 (258)
T COG3638 141 --------------------------------------------------------------------AYQRASTLSGGQ 152 (258)
T ss_pred --------------------------------------------------------------------HHHHhccCCcch
Confidence 112345689999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhh
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEE 376 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~ 376 (541)
+|||+|+++++. ++++++.||| .+.|..+.. +.+++|+++++. +.|+++.+|.+|+..
T Consensus 153 QQRVaIARaL~Q------~pkiILADEPvasLDp~~a~------------~Vm~~l~~in~~~g~Tvi~nLH~vdlA~ 212 (258)
T COG3638 153 QQRVAIARALVQ------QPKIILADEPVASLDPESAK------------KVMDILKDINQEDGITVIVNLHQVDLAK 212 (258)
T ss_pred hHHHHHHHHHhc------CCCEEecCCcccccChhhHH------------HHHHHHHHHHHHcCCEEEEEechHHHHH
Confidence 999999999999 9999999999 666666555 788889888754 789999999999875
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2e-28 Score=238.66 Aligned_cols=198 Identities=19% Similarity=0.269 Sum_probs=157.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++++++.|+...++++|++.| |++||||||||||||+| +..|+.|.|. ++|+.+. +......+
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~---~~~~~l~---D~~~~~~~ 75 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR---LNGRVLF---DVSNLAVR 75 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEE---ECCEecc---chhccchh
Confidence 467889999999999999999999 99999999999999999 4568899999 9998432 22223455
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccccc--chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++|||||++.||+|+ ||.+||+||.... ..++.+...++.++|.++.|.+
T Consensus 76 ~R~VGfvFQ~YALF~Hm------tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~-------------------- 129 (345)
T COG1118 76 DRKVGFVFQHYALFPHM------TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-------------------- 129 (345)
T ss_pred hcceeEEEechhhcccc------hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc--------------------
Confidence 67899999999999999 9999999993111 2245667778888888888876
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+.+++|.++||||+|++++++
T Consensus 130 -----------------------------------------------------------la~ryP~QLSGGQrQRVALAR 150 (345)
T COG1118 130 -----------------------------------------------------------LADRYPAQLSGGQRQRVALAR 150 (345)
T ss_pred -----------------------------------------------------------hhhcCchhcChHHHHHHHHHH
Confidence 345577889999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. .|+++++||| |..|+. ....++++|.+... .+-++++.+|+.+ +..++..+|-+.
T Consensus 151 ALA~------eP~vLLLDEPf~ALDa~------------vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl 211 (345)
T COG1118 151 ALAV------EPKVLLLDEPFGALDAK------------VRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVL 211 (345)
T ss_pred Hhhc------CCCeEeecCCchhhhHH------------HHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEe
Confidence 9988 9999999999 665542 23367777777654 4778889998866 335677777664
No 18
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=1.5e-27 Score=232.62 Aligned_cols=199 Identities=19% Similarity=0.256 Sum_probs=161.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||+++|+++.+|+|+||+| +|+|||||||||||++|+ ..|..|+|+ ++|+ .+.....+.+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~---l~g~----~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL---LDGK----DIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE---ECCC----chhhcCHHHH
Confidence 468899999999999999999999 999999999999999994 467799999 9998 5555556677
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccc--h--hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--V--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.++||+|.....+.+ ||+|.|.+||.|+. . ..++..+.+..+|+.+|+.+
T Consensus 75 Ak~ia~vpQ~~~~~~~~------tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~------------------ 130 (258)
T COG1120 75 AKKLAYVPQSPSAPFGL------TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH------------------ 130 (258)
T ss_pred hhhEEEeccCCCCCCCc------EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHH------------------
Confidence 88999999999888889 99999999988742 1 23445557888888888865
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|||++|++.|
T Consensus 131 -------------------------------------------------------------la~r~~~~LSGGerQrv~i 149 (258)
T COG1120 131 -------------------------------------------------------------LADRPVDELSGGERQRVLI 149 (258)
T ss_pred -------------------------------------------------------------HhcCcccccChhHHHHHHH
Confidence 3344566799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++++|||+...++.+.- .+.+.+.+..+ .++++++.+|+++...+ .+.++.+
T Consensus 150 ArALaQ------~~~iLLLDEPTs~LDi~~Q~-----------evl~ll~~l~~~~~~tvv~vlHDlN~A~r-yad~~i~ 211 (258)
T COG1120 150 ARALAQ------ETPILLLDEPTSHLDIAHQI-----------EVLELLRDLNREKGLTVVMVLHDLNLAAR-YADHLIL 211 (258)
T ss_pred HHHHhc------CCCEEEeCCCccccCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHHH-hCCEEEE
Confidence 999999 99999999996655555543 56777888874 58999999999887654 5666665
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 212 lk 213 (258)
T COG1120 212 LK 213 (258)
T ss_pred EE
Confidence 53
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.2e-27 Score=226.03 Aligned_cols=188 Identities=19% Similarity=0.285 Sum_probs=150.0
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|+++|+++.|++.++|+||||+| +|+||||||||||+++|+| .|..|+|. +.|. .... .
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~---~~g~----~~~~---~ 71 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK---IFGK----PVRK---R 71 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE---Eccc----cccc---c
Confidence 35789999999999768999999999 9999999999999999955 67889998 7776 2111 1
Q ss_pred cccccEEEEeCCCccc--cccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 149 GRQYPWGVVEGSTVLT--PSLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~--~~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
..+.++|||+|...+. ..+ ||+|.+.++++... ...+...+.+.++|+.+|+.+
T Consensus 72 ~~~~~IgYVPQ~~~~d~~fP~------tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~-------------- 131 (254)
T COG1121 72 RKRLRIGYVPQKSSVDRSFPI------TVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED-------------- 131 (254)
T ss_pred ccCCeEEEcCcccccCCCCCc------CHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh--------------
Confidence 1235799999965432 334 99999999865532 123344778899999999876
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+.++.+..+||||+|
T Consensus 132 -----------------------------------------------------------------~~~r~i~~LSGGQ~Q 146 (254)
T COG1121 132 -----------------------------------------------------------------LRDRQIGELSGGQKQ 146 (254)
T ss_pred -----------------------------------------------------------------hhCCcccccCcHHHH
Confidence 334556679999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
|+-||++++. +++|+++|||..|-+..... .|.+.|.+..+.++++++++|++....
T Consensus 147 RV~lARAL~~------~p~lllLDEP~~gvD~~~~~-----------~i~~lL~~l~~eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQ------NPDLLLLDEPFTGVDVAGQK-----------EIYDLLKELRQEGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhcc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCcHHhH
Confidence 9999999999 99999999998886666554 778888888877999999999988654
No 20
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.6e-27 Score=218.79 Aligned_cols=199 Identities=18% Similarity=0.164 Sum_probs=147.0
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcC-----CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLS-----DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~-----~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.+++|++.||.+.+|++||+.| |+|||||||||||||+| +.. ...|+|. +.|+++...
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~---~~g~ni~~~-- 79 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVL---LDGKNIYDP-- 79 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEE---ECCeeccCC--
Confidence 35689999999999999999999999 99999999999999999 322 2358888 888844321
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....-..++++|+|||.++-|| + +++|||+|+....+...++..+.++..|...+|.+--|
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~------SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK------------ 140 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-M------SIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK------------ 140 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-c------hHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH------------
Confidence 1223356678999999999999 8 99999999943344444666677777777776654111
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+ -.+.....+||||+||
T Consensus 141 -----------------------------------D----------------------------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 141 -----------------------------------D----------------------------RLHKSALGLSGGQQQR 157 (253)
T ss_pred -----------------------------------H----------------------------HhhCCccCCChhHHHH
Confidence 1 0122345689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++||++++. +|+++++||| ...|.+... ++++.+.+. +..-|++|++|.+.- ..|++..
T Consensus 158 LcIARalAv------~PeVlLmDEPtSALDPIsT~------------kIEeLi~eL-k~~yTIviVTHnmqQ-AaRvSD~ 217 (253)
T COG1117 158 LCIARALAV------KPEVLLMDEPTSALDPISTL------------KIEELITEL-KKKYTIVIVTHNMQQ-AARVSDY 217 (253)
T ss_pred HHHHHHHhc------CCcEEEecCcccccCchhHH------------HHHHHHHHH-HhccEEEEEeCCHHH-HHHHhHh
Confidence 999999988 9999999999 556666555 455555444 367788999998763 3344443
No 21
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=1.6e-25 Score=200.74 Aligned_cols=193 Identities=20% Similarity=0.234 Sum_probs=150.5
Q ss_pred ceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 79 YIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.|.++++++..+. -.||++|++.| ||||||||||||||-+| +..+++|+|+ +.|+.+...-....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~---l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR---LLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE---EcCcchhhcCHHHH
Confidence 5677777777754 35999999999 99999999999999999 5568899999 88986543323334
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...+.+++|||||.+.|.|++ |..||+.++....+.+.......+..+|+.+||.+
T Consensus 83 A~~R~~~vGfVFQSF~Lip~l------tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~------------------ 138 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNL------TALENVALPLELRGESSADSRAGAKALLEAVGLGK------------------ 138 (228)
T ss_pred HHhhccceeEEEEeeeccccc------hhhhhccchhhhcCCccccHHHHHHHHHHHhCccc------------------
Confidence 455678899999999999999 99999999854444344455666777888888864
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
-...+|.++|+|++|+|+|
T Consensus 139 -------------------------------------------------------------Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 139 -------------------------------------------------------------RLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred -------------------------------------------------------------ccccCccccCchHHHHHHH
Confidence 1123567899999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhh
Q psy91 307 EKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEER 377 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~ 377 (541)
+++..- .|.+++.||| |..|..... ++...|.+.++. +.|.++++|+..+..+
T Consensus 158 ARAfa~------~P~vLfADEPTGNLD~~Tg~------------~iaDLlF~lnre~G~TlVlVTHD~~LA~R 212 (228)
T COG4181 158 ARAFAG------RPDVLFADEPTGNLDRATGD------------KIADLLFALNRERGTTLVLVTHDPQLAAR 212 (228)
T ss_pred HHHhcC------CCCEEeccCCCCCcchhHHH------------HHHHHHHHHhhhcCceEEEEeCCHHHHHh
Confidence 999988 9999999999 666654443 666777777664 6778889999877654
No 22
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-25 Score=231.87 Aligned_cols=198 Identities=17% Similarity=0.232 Sum_probs=153.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ .
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~---~~g~~i----~~~~--~ 75 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF---IDGEDV----THRS--I 75 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE---ECCEEC----CCCC--H
Confidence 4689999999999888999999999 9999999999999999955 57789999 888733 2222 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+|||||++.+||++ ||.||+.|+....+..+.+..+++.++++.+|+.++
T Consensus 76 ~~r~ig~vfQ~~~lfp~~------tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-------------------- 129 (351)
T PRK11432 76 QQRDICMVFQSYALFPHM------SLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-------------------- 129 (351)
T ss_pred HHCCEEEEeCCcccCCCC------CHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh--------------------
Confidence 346799999999999999 999999998322233455566678888888887541
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.++.+..+|+|++|+++|+++
T Consensus 130 -----------------------------------------------------------~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 130 -----------------------------------------------------------EDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred -----------------------------------------------------------hcCChhhCCHHHHHHHHHHHH
Confidence 233456789999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+++++|||..+.+.... +++.+.|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 151 L~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tii~vTHd~~e~-~~laD~i~vm~ 211 (351)
T PRK11432 151 LIL------KPKVLLFDEPLSNLDANLR-----------RSMREKIRELQQQFNITSLYVTHDQSEA-FAVSDTVIVMN 211 (351)
T ss_pred HHc------CCCEEEEcCCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEEEEE
Confidence 999 9999999999777554433 2666667666543 78999999987643 34566666654
No 23
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.7e-25 Score=204.56 Aligned_cols=191 Identities=21% Similarity=0.293 Sum_probs=152.0
Q ss_pred eeeecccccccccc--eeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRKS--VKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~~--iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+++++.+|.+++ +|+++|++| +++||||||||||||+++| .|..|+|. ++|. .+.+.
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~---l~~r----~i~gP---- 72 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ---LNGR----RIEGP---- 72 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEE---ECCE----eccCC----
Confidence 45678888998877 999999999 9999999999999999954 67778888 7777 33332
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
....|+|||++.|+|++ |+.+|++|+....++.+.+..+.+...+.++||.+
T Consensus 73 -gaergvVFQ~~~LlPWl------~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~--------------------- 124 (259)
T COG4525 73 -GAERGVVFQNEALLPWL------NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG--------------------- 124 (259)
T ss_pred -CccceeEeccCccchhh------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc---------------------
Confidence 23459999999999999 99999999955567888888899999999999976
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++++..+|||++|++.|+++
T Consensus 125 ----------------------------------------------------------~~~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 125 ----------------------------------------------------------AEHKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred ----------------------------------------------------------ccccceEeecchHHHHHHHHHH
Confidence 2244567799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+.. +|.++++||| |..|+... +++.+.|-+..+ .++.+.+.+|+++- .--+..++.+.
T Consensus 147 La~------eP~~LlLDEPfgAlDa~tR------------e~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvl 206 (259)
T COG4525 147 LAV------EPQLLLLDEPFGALDALTR------------EQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVL 206 (259)
T ss_pred hhc------CcceEeecCchhhHHHHHH------------HHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEe
Confidence 988 9999999999 77665443 367677666654 47788888887652 23455566555
No 24
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2e-25 Score=231.74 Aligned_cols=197 Identities=16% Similarity=0.171 Sum_probs=151.8
Q ss_pred ceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++|+++.| +++.+|+++||+| +|+|||||||||||++|+| .+++|+|. ++|..+ ...+ .
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~---~~g~~i----~~~~--~ 73 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW---IGGRVV----NELE--P 73 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE---ECCEEC----CCCC--H
Confidence 47899999999 7788999999999 9999999999999999955 57789999 888833 2211 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+|||||++.++|++ ||.||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 74 ~~r~ig~v~Q~~~lfp~~------tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------------------- 126 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHM------SVRENMAYGLKIRGMPKAEIEERVAEAARILELEP--------------------- 126 (356)
T ss_pred HHCCEEEEeCCccccCCC------CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh---------------------
Confidence 235799999999999999 99999998832223344455567778888888754
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++.+..+|+|++|+++|+++
T Consensus 127 ----------------------------------------------------------~~~~~~~~LSgGq~QRvalARA 148 (356)
T PRK11650 127 ----------------------------------------------------------LLDRKPRELSGGQRQRVAMGRA 148 (356)
T ss_pred ----------------------------------------------------------HhhCChhhCCHHHHHHHHHHHH
Confidence 1233456799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+++++|||..+.+.... +.+.++|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 149 L~~------~P~llLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tii~vTHd~~ea-~~l~D~i~vl~ 209 (356)
T PRK11650 149 IVR------EPAVFLFDEPLSNLDAKLR-----------VQMRLEIQRLHRRLKTTSLYVTHDQVEA-MTLADRVVVMN 209 (356)
T ss_pred Hhc------CCCEEEEeCCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEe
Confidence 999 9999999999777554443 2666667666554 78999999987633 34566666663
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.91 E-value=2.2e-25 Score=231.17 Aligned_cols=197 Identities=19% Similarity=0.254 Sum_probs=153.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||+++|+++.+|+++||++ +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~---i~g~~~----~~~~--~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY---QGGRDI----TRLP--PQ 74 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE---ECCEEC----CCCC--HH
Confidence 589999999999988999999999 9999999999999999955 57789999 888833 2211 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||+..+||++ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 75 ~r~ig~v~Q~~~lfp~~------tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~---------------------- 126 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNL------TVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG---------------------- 126 (353)
T ss_pred HCCEEEEeCCcccCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc----------------------
Confidence 45799999999999999 99999999832223344555667788888887754
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|+++|++++
T Consensus 127 ---------------------------------------------------------~~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 127 ---------------------------------------------------------SERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred ---------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHH
Confidence 22345567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++++|||..+-+.... .++.+.|.+..+. +.++++.+|+.+. ...+..++.++.
T Consensus 150 ~~------~P~llLLDEP~s~LD~~~r-----------~~l~~~L~~l~~~~~~tvi~vTHd~~e-a~~l~d~i~vl~ 209 (353)
T TIGR03265 150 AT------SPGLLLLDEPLSALDARVR-----------EHLRTEIRQLQRRLGVTTIMVTHDQEE-ALSMADRIVVMN 209 (353)
T ss_pred hc------CCCEEEEcCCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEEE
Confidence 99 9999999999776554433 2677777766554 7899999999873 345666766664
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.91 E-value=3.1e-25 Score=231.42 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=154.1
Q ss_pred CCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 75 TDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.+.+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+..|+|. ++|+.+ ...+
T Consensus 10 ~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~---~~g~~i----~~~~ 82 (375)
T PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM---LDGQDI----THVP 82 (375)
T ss_pred cCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEEC----CCCC
Confidence 3456799999999999889999999999 9999999999999999955 56789999 888833 2222
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
..++.+|||||++.+||++ ||.||+.|+....+.+..+..+++.++++.+|+.++
T Consensus 83 --~~~r~ig~vfQ~~~lfp~l------tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------------- 137 (375)
T PRK09452 83 --AENRHVNTVFQSYALFPHM------TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF----------------- 137 (375)
T ss_pred --HHHCCEEEEecCcccCCCC------CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------------
Confidence 2245799999999999999 999999997322233444455567777887777541
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
.++.+..+|+|++|+++|
T Consensus 138 --------------------------------------------------------------~~~~p~~LSgGq~QRVaL 155 (375)
T PRK09452 138 --------------------------------------------------------------AQRKPHQLSGGQQQRVAI 155 (375)
T ss_pred --------------------------------------------------------------hhCChhhCCHHHHHHHHH
Confidence 233456789999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +|+++++|||..+.+.... +.+.++|.+..+. +.++++.+|+.+.. ..+..++.+
T Consensus 156 ARaL~~------~P~llLLDEP~s~LD~~~r-----------~~l~~~L~~l~~~~g~tiI~vTHd~~ea-~~laDri~v 217 (375)
T PRK09452 156 ARAVVN------KPKVLLLDESLSALDYKLR-----------KQMQNELKALQRKLGITFVFVTHDQEEA-LTMSDRIVV 217 (375)
T ss_pred HHHHhc------CCCEEEEeCCCCcCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 999999 9999999999777554433 2667777766553 78899999987643 345666666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 218 l~ 219 (375)
T PRK09452 218 MR 219 (375)
T ss_pred EE
Confidence 53
No 27
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.91 E-value=2.9e-25 Score=230.73 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=154.2
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCC--CCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLY--GDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~--G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+++|+++|+++.+|+++||+| +|+|||||||||||++|+| .+++ |+|. ++|..+ ...+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~---~~g~~~----~~~~- 75 (362)
T TIGR03258 4 GGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA---IADRDL----THAP- 75 (362)
T ss_pred eEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE---ECCEEC----CCCC-
Confidence 4689999999999888999999999 9999999999999999955 5678 9999 888733 2211
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||||+..++|++ ||+||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 76 -~~~r~ig~vfQ~~~l~p~~------tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~------------------- 129 (362)
T TIGR03258 76 -PHKRGLALLFQNYALFPHL------KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD------------------- 129 (362)
T ss_pred -HHHCCEEEEECCcccCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-------------------
Confidence 2345799999999999999 99999998732223344555667788888888764
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|+++|+
T Consensus 130 ------------------------------------------------------------~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 130 ------------------------------------------------------------AAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred ------------------------------------------------------------hhhCChhhCCHHHHHHHHHH
Confidence 12334567999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc--CcceeeccccchhhhhcccceeEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ--GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~--~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
++++. +|+++++|||..|.+..... ++.++|.+..+. +.++++.+|+.+.. ..+..++.+
T Consensus 150 RAL~~------~P~llLLDEP~s~LD~~~r~-----------~l~~~l~~l~~~~~g~til~vTHd~~ea-~~l~dri~v 211 (362)
T TIGR03258 150 RAIAI------EPDVLLLDEPLSALDANIRA-----------NMREEIAALHEELPELTILCVTHDQDDA-LTLADKAGI 211 (362)
T ss_pred HHHhc------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHHhCCCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 99999 99999999997775544332 677777776654 67899999997743 345666666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 212 l~ 213 (362)
T TIGR03258 212 MK 213 (362)
T ss_pred EE
Confidence 53
No 28
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=2.4e-25 Score=217.46 Aligned_cols=188 Identities=19% Similarity=0.221 Sum_probs=151.1
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVL 163 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l 163 (541)
..-++++||+| +|||-||||||||+|+| +..|+.|+|+ ++|.++...........+++.+++|||.+.|
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~il---v~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL---VDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEE---ECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 34688999998 99999999999999999 7889999999 8888554322222223456789999999999
Q ss_pred ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCe
Q psy91 164 TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDI 243 (541)
Q Consensus 164 ~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~v 243 (541)
+||. ||.+|+.|+.-..+.++.+..+++.++|+.+||.+
T Consensus 118 lPhr------tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~----------------------------------- 156 (386)
T COG4175 118 LPHR------TVLENVAFGLEVQGVPKAEREERALEALELVGLEG----------------------------------- 156 (386)
T ss_pred ccch------hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-----------------------------------
Confidence 9999 99999999966678899999999999999999986
Q ss_pred eEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEE
Q psy91 244 GFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLT 323 (541)
Q Consensus 244 G~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~ 323 (541)
+.++++..+|||++|||.++++++. ++.++
T Consensus 157 --------------------------------------------~~~~yp~eLSGGMqQRVGLARAla~------~~~Il 186 (386)
T COG4175 157 --------------------------------------------YADKYPNELSGGMQQRVGLARALAN------DPDIL 186 (386)
T ss_pred --------------------------------------------hhhcCcccccchHHHHHHHHHHHcc------CCCEE
Confidence 3455677899999999999999999 99999
Q ss_pred EEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhh-cccCcceeeccccchhhhhcccceeEEE
Q psy91 324 VVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDE-NRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 324 I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e-~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+.||| ...| ..|..++..-|-+. .+.++|+++.+|++| +..++..|+-+.
T Consensus 187 LMDEaFSALD------------PLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaim 238 (386)
T COG4175 187 LMDEAFSALD------------PLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIM 238 (386)
T ss_pred EecCchhhcC------------hHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEe
Confidence 99999 4443 44444554444444 456899999999988 455677776654
No 29
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.8e-25 Score=210.21 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=150.6
Q ss_pred ceeeecccccccccc----eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 79 YIGFATLPEQVHRKS----VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~----iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.++||++.|+.+. +|++|||+| +|+|+||||||||.++| +..++.|+|. ++|+.+ ....+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~---~~G~~~---~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL---LDGKPL---APKKR 76 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE---ECCccc---Ccccc
Confidence 578999999999887 999999999 99999999999999999 5578899999 888722 22222
Q ss_pred cccccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 147 VRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.+.+.+.+.+||||+ .|.|.. ||.+.+.-+....+..+. .+++.++++.||+..
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~------tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~---------------- 132 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRR------TVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPP---------------- 132 (252)
T ss_pred chhhccceeEEecCCccccCcch------hHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCH----------------
Confidence 335677899999996 577877 888877665333333332 233777888888753
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
-+.++.+..+||||.||+
T Consensus 133 --------------------------------------------------------------~~l~R~P~eLSGGQ~QRi 150 (252)
T COG1124 133 --------------------------------------------------------------SFLDRRPHELSGGQRQRI 150 (252)
T ss_pred --------------------------------------------------------------HHHhcCchhcChhHHHHH
Confidence 134567788999999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rv 383 (541)
+|++++.. +|+++|+|||....+. .+..++.++|.+..+. +-+.++.+|++..... ++.|+
T Consensus 151 aIARAL~~------~PklLIlDEptSaLD~-----------siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~-~cdRi 212 (252)
T COG1124 151 AIARALIP------EPKLLILDEPTSALDV-----------SVQAQILNLLLELKKERGLTYLFISHDLALVEH-MCDRI 212 (252)
T ss_pred HHHHHhcc------CCCEEEecCchhhhcH-----------HHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHH-Hhhhe
Confidence 99999988 9999999999665333 3334788888887654 5688899999886653 55565
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.|.
T Consensus 213 ~Vm 215 (252)
T COG1124 213 AVM 215 (252)
T ss_pred eee
Confidence 554
No 30
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.91 E-value=3e-25 Score=228.82 Aligned_cols=201 Identities=17% Similarity=0.235 Sum_probs=152.9
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|+++||++.|++ ..+|+||||+| +|+|||||||||||++| +..+++|+|+ ++|..+. .......
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~---i~G~~i~-~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI---VDGQDLT-TLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEECC-cCCHHHH
Confidence 789999999952 46999999999 99999999999999999 4467889999 8887332 1111112
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..++.+|||||+..+++.+ ||.+|+.++....+.++.+..+++.++++.+|+.+.
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~------tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~------------------ 133 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSR------TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDK------------------ 133 (343)
T ss_pred HHHhcCEEEEECCccccccC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh------------------
Confidence 23356799999999999999 999999887322233445556677888888887641
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.++++..+|+|++|++.|+
T Consensus 134 -------------------------------------------------------------~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 134 -------------------------------------------------------------HDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred -------------------------------------------------------------hhCChhhCCHHHHHHHHHH
Confidence 1234557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++++|||..+.+..... .+.++|.+..+. +.++++.+|+++... .++.++.++
T Consensus 153 RAL~~------~P~iLLlDEPts~LD~~t~~-----------~i~~lL~~l~~~~g~tiiliTH~~~~v~-~~~d~v~vl 214 (343)
T TIGR02314 153 RALAS------NPKVLLCDEATSALDPATTQ-----------SILELLKEINRRLGLTILLITHEMDVVK-RICDCVAVI 214 (343)
T ss_pred HHHHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99999 99999999998876655553 677777777654 789999999987543 356666665
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 215 ~ 215 (343)
T TIGR02314 215 S 215 (343)
T ss_pred E
Confidence 4
No 31
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.8e-24 Score=210.62 Aligned_cols=201 Identities=20% Similarity=0.223 Sum_probs=161.1
Q ss_pred Cceeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.++++++.|++. .+|+++|++| +|+||||||||||+++| +..+.+|.|. ++|..+.. .....
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~---~~g~~~~~---~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL---VDGLDTSS---EKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEE---ECCeeccc---hhhHH
Confidence 357899999999876 8999999999 99999999999999999 5578889998 88873221 12344
Q ss_pred cccccEEEEeCCCcc-ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVL-TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l-~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||||++.. +..- ||.+.++|+....+.+.++..+++..+++.+|+.+
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~------tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~------------------- 130 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGP------TVEDEVAFGLENLGLPREEIEERVAEALELVGLEE------------------- 130 (235)
T ss_pred HhhcceEEEEECcccccccC------cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-------------------
Confidence 566789999998632 2333 89999999966667777788899999999999875
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|+++||
T Consensus 131 ------------------------------------------------------------~~~r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 131 ------------------------------------------------------------LLDRPPFNLSGGQKQRVAIA 150 (235)
T ss_pred ------------------------------------------------------------hccCCccccCCcceeeHHhh
Confidence 23456778999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..++. +|+++|+|||+.|.+..... .+.+.+.+..+. +.|+++.+|+++.... +..++.++
T Consensus 151 ~vLa~------~P~iliLDEPta~LD~~~~~-----------~l~~~l~~L~~~~~~tii~~tHd~~~~~~-~ad~v~vl 212 (235)
T COG1122 151 GVLAM------GPEILLLDEPTAGLDPKGRR-----------ELLELLKKLKEEGGKTIIIVTHDLELVLE-YADRVVVL 212 (235)
T ss_pred HHHHc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHhcCCCeEEEEeCcHHHHHh-hCCEEEEE
Confidence 99999 99999999999987766553 677778888776 6899999999886543 55666665
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 213 ~ 213 (235)
T COG1122 213 D 213 (235)
T ss_pred E
Confidence 4
No 32
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=4.4e-25 Score=223.43 Aligned_cols=198 Identities=20% Similarity=0.282 Sum_probs=155.9
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++||++.|+ .+.+|+||||+| |++|||||||||||++|+ ..+++|+|. +.|. ..... ...
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~---i~G~----~~~~~-~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL---VLGY----DVVKE-PAK 75 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---EcCE----eCccC-HHH
Confidence 567899999999 699999999999 999999999999999994 467889999 8887 22221 223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+|||+|++.+++.+ ||+|++.|.....+.......++++++++.+||.+.
T Consensus 76 ~~~~igy~~~~~~~~~~l------T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-------------------- 129 (293)
T COG1131 76 VRRRIGYVPQEPSLYPEL------TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK-------------------- 129 (293)
T ss_pred HHhheEEEccCCCCCccc------cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh--------------------
Confidence 456799999999999999 999999986322222224456678888888888641
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.+..+..+|+|++|++.|+.+
T Consensus 130 -----------------------------------------------------------~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 130 -----------------------------------------------------------ANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred -----------------------------------------------------------hCcchhhcCHHHHHHHHHHHH
Confidence 122345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccC-cceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG-KTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~-rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+|+|+|||+.|.+.... ..|.+.|.+..+.+ +++++.+|.++-.+. ++.+|.++.
T Consensus 151 L~~------~P~lliLDEPt~GLDp~~~-----------~~~~~~l~~l~~~g~~tvlissH~l~e~~~-~~d~v~il~ 211 (293)
T COG1131 151 LLH------DPELLILDEPTSGLDPESR-----------REIWELLRELAKEGGVTILLSTHILEEAEE-LCDRVIILN 211 (293)
T ss_pred Hhc------CCCEEEECCCCcCCCHHHH-----------HHHHHHHHHHHhCCCcEEEEeCCcHHHHHH-hCCEEEEEe
Confidence 998 9999999999998665444 37888899888877 799999999875543 466777764
No 33
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=9.3e-25 Score=228.15 Aligned_cols=200 Identities=17% Similarity=0.215 Sum_probs=152.1
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+.++++++.|++..+|+++||+| +|+|||||||||||++|+| .++.|+|+ ++|+.+ ...+
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~---i~g~~i----~~~~- 87 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM---LDGVDL----SHVP- 87 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEEC----CCCC-
Confidence 345699999999999888999999999 9999999999999999954 56789999 888732 2211
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||||++.+||++ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 88 -~~~r~ig~vfQ~~~lfp~l------tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~------------------- 141 (377)
T PRK11607 88 -PYQRPINMMFQSYALFPHM------TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE------------------- 141 (377)
T ss_pred -HHHCCEEEEeCCCccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------------------
Confidence 2345799999999999999 99999998732223344555566777777777753
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|+++|+
T Consensus 142 ------------------------------------------------------------~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 142 ------------------------------------------------------------FAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred ------------------------------------------------------------hhcCChhhCCHHHHHHHHHH
Confidence 22345567999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++++|||..+.+..... ++.+.|.+..+ .+.++++.+|+.+. ...+..++.++
T Consensus 162 RAL~~------~P~lLLLDEP~s~LD~~~r~-----------~l~~~l~~l~~~~g~tii~vTHd~~e-a~~laDri~vl 223 (377)
T PRK11607 162 RSLAK------RPKLLLLDEPMGALDKKLRD-----------RMQLEVVDILERVGVTCVMVTHDQEE-AMTMAGRIAIM 223 (377)
T ss_pred HHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEcCCHHH-HHHhCCEEEEE
Confidence 99999 99999999997765544332 45555554433 47889999998763 24566777666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 224 ~ 224 (377)
T PRK11607 224 N 224 (377)
T ss_pred e
Confidence 4
No 34
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=3.7e-25 Score=199.75 Aligned_cols=203 Identities=17% Similarity=0.213 Sum_probs=158.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc--c---
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA--G--- 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~--~--- 144 (541)
+.+.++|+.++||...+|++||++. +|||.|||||||+|||| +..|..|.|. ++|+.+....+ +
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~---v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR---VNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEE---ECCeEEEeeeCCCCCee
Confidence 4678999999999999999999987 99999999999999999 8889999999 78875432211 1
Q ss_pred ----cccccccccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 145 ----TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 145 ----~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
......+.+.|+|||+++|+.++ ||.||+.-+... .+.++.+..+++...|..+|+..
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHm------tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e----------- 144 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHM------TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE----------- 144 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHH------HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh-----------
Confidence 11222345679999999999999 999999866222 24577888888888899888864
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
..+.++..+|||
T Consensus 145 --------------------------------------------------------------------k~~~YP~~LSGG 156 (256)
T COG4598 145 --------------------------------------------------------------------KADAYPAHLSGG 156 (256)
T ss_pred --------------------------------------------------------------------hhhcCccccCch
Confidence 123456779999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcc
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l 379 (541)
++|+++|++++.. .|.+++.|||+...+ ..+-......+.+....+||..+.+|.+.+.. .+
T Consensus 157 QQQR~aIARaLam------eP~vmLFDEPTSALD-----------PElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR-~V 218 (256)
T COG4598 157 QQQRVAIARALAM------EPEVMLFDEPTSALD-----------PELVGEVLKVMQDLAEEGRTMVVVTHEMGFAR-DV 218 (256)
T ss_pred HHHHHHHHHHHhc------CCceEeecCCcccCC-----------HHHHHHHHHHHHHHHHhCCeEEEEeeehhHHH-hh
Confidence 9999999999988 999999999965422 22333556667777788999999999987653 35
Q ss_pred cceeEEE
Q psy91 380 KLRLTVV 386 (541)
Q Consensus 380 ~~rvnvI 386 (541)
+..|.++
T Consensus 219 ss~v~fL 225 (256)
T COG4598 219 SSHVIFL 225 (256)
T ss_pred hhheEEe
Confidence 5555554
No 35
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=7.3e-25 Score=208.49 Aligned_cols=205 Identities=19% Similarity=0.255 Sum_probs=159.1
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc-
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR- 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~- 148 (541)
+.+.+++|+++||+-.+++||||+| +||||||||||||+|+| ...|+.|.|. +.|+ ++.+.+..
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~---~~G~----~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI---FRGR----DITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEE---ECCc----ccCCCCHHH
Confidence 3567899999999999999999999 99999999999999999 5678999999 9999 44443322
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc------------chhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE------------QVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~------------~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
..+..++..||...+|+.+ ||.||+..+.... .....+..+++..+|+.+||.+.
T Consensus 76 iar~Gi~RTFQ~~rlF~~l------TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~------- 142 (250)
T COG0411 76 IARLGIARTFQITRLFPGL------TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL------- 142 (250)
T ss_pred HHhccceeecccccccCCC------cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-------
Confidence 2345688899999999999 9999998872211 01234555667777777777652
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
.+....++
T Consensus 143 ------------------------------------------------------------------------a~~~A~~L 150 (250)
T COG0411 143 ------------------------------------------------------------------------ADRPAGNL 150 (250)
T ss_pred ------------------------------------------------------------------------hcchhhcC
Confidence 23334457
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
|.|++++++|+++++. +|+|+++|||..|-+..... .+.+++.+..+ .+.++.+.-|++++.
T Consensus 151 syG~qR~LEIArALa~------~P~lLLLDEPaAGln~~e~~-----------~l~~~i~~i~~~~g~tillIEHdM~~V 213 (250)
T COG0411 151 SYGQQRRLEIARALAT------QPKLLLLDEPAAGLNPEETE-----------ELAELIRELRDRGGVTILLIEHDMKLV 213 (250)
T ss_pred ChhHhHHHHHHHHHhc------CCCEEEecCccCCCCHHHHH-----------HHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence 8899999999999999 99999999999997655443 55666666665 458889999999976
Q ss_pred hhcccceeEEEc---CCCCC
Q psy91 376 ERGVKLRLTVVD---TPGFG 392 (541)
Q Consensus 376 ~~~l~~rvnvIp---vi~k~ 392 (541)
++++.+++|.. +|+-|
T Consensus 214 -m~l~dri~Vl~~G~~IAeG 232 (250)
T COG0411 214 -MGLADRIVVLNYGEVIAEG 232 (250)
T ss_pred -hhhccEEEeccCCcCcccC
Confidence 45899999875 45444
No 36
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.90 E-value=1.3e-24 Score=221.86 Aligned_cols=201 Identities=19% Similarity=0.206 Sum_probs=152.1
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.|.++||+++|+++.+|++|||+| ||+||||||||||+++|+| .+++|+|+ +.|..+ ....
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~---i~G~~~----~~~~- 75 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS---LCGEPV----PSRA- 75 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEec----ccch-
Confidence 345799999999999989999999999 9999999999999999955 57889999 888732 2211
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|+..+++.+ |+.||+.+.....+....+...++..+++.+|+.+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 130 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDF------TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN------------------- 130 (306)
T ss_pred HHHHhcEEEEeccCcCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------------------
Confidence 12346799999999999999 99999986421122233334445666666666643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 131 ------------------------------------------------------------~~~~~~~~LS~G~~qrl~la 150 (306)
T PRK13537 131 ------------------------------------------------------------KADAKVGELSGGMKRRLTLA 150 (306)
T ss_pred ------------------------------------------------------------HhcCchhhCCHHHHHHHHHH
Confidence 11223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++|+|||..|.+..... .+.+++.+..+.+.++++.+|.++..+ .++.++.++.
T Consensus 151 ~aL~~------~P~lllLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~till~sH~l~e~~-~~~d~i~il~ 212 (306)
T PRK13537 151 RALVN------DPDVLVLDEPTTGLDPQARH-----------LMWERLRSLLARGKTILLTTHFMEEAE-RLCDRLCVIE 212 (306)
T ss_pred HHHhC------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-HhCCEEEEEE
Confidence 99999 99999999998887766553 677777777666889999999987443 3566666664
No 37
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.2e-24 Score=193.26 Aligned_cols=194 Identities=17% Similarity=0.167 Sum_probs=151.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccc--eecccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNT--VIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~--~~~~~~~~~~ 148 (541)
.|+++++.+.||...+|.||+++. .++||||+|||||||.| +..+.+|+.. +.|... .........+
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~---ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN---IAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEE---ecccccccccCccHHHHH
Confidence 478999999999999999999988 89999999999999999 7788899888 444411 0111112334
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccc-cccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT-LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~-~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|+|||++.|+|++ ||.||+.-+. ...++++.+...++.++|..+.+.
T Consensus 79 ~lr~~vgmvfqqy~lwphl------tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-------------------- 132 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHL------TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-------------------- 132 (242)
T ss_pred HHHHhhhhhhhhhccCchh------HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc--------------------
Confidence 5677899999999999999 9999987651 122445555555555555544443
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+ +.++.+-.+|||++|+++|+
T Consensus 133 ----------------------------------------------------------~-~adr~plhlsggqqqrvaia 153 (242)
T COG4161 133 ----------------------------------------------------------P-YADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred ----------------------------------------------------------c-ccccCceecccchhhhHHHH
Confidence 3 45666777999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
++++. +|.+++.|||+.. ++..|..|+...+++...-+.|-.|.+|..++..+
T Consensus 154 ralmm------kpqvllfdeptaa-----------ldpeitaqvv~iikel~~tgitqvivthev~va~k 206 (242)
T COG4161 154 RALMM------EPQVLLFDEPTAA-----------LDPEITAQIVSIIKELAETGITQVIVTHEVEVARK 206 (242)
T ss_pred HHHhc------CCcEEeecCcccc-----------cCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHh
Confidence 99998 9999999999764 34556778999999999999999999999887654
No 38
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=1.8e-24 Score=195.87 Aligned_cols=196 Identities=15% Similarity=0.199 Sum_probs=147.9
Q ss_pred eeeecccccccccceeecceEEE----EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYP 153 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~ 153 (541)
|.+++|.+.|+..+.--++++.- ||+||||||||||||+| ...|.+|+|+ ++|+ +....+ ...+.
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~---i~g~----d~t~~~--P~~RP 72 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL---INGV----DHTASP--PAERP 72 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEE---EcCe----ecCcCC--cccCC
Confidence 45678888888766544444322 99999999999999999 4578889999 8888 333322 33457
Q ss_pred EEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCC
Q psy91 154 WGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 233 (541)
Q Consensus 154 ~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~ 233 (541)
++++||+.+||.|+ ||.+|+.+|.-|.-.-..+.+++++.++..+|+.++
T Consensus 73 VSmlFQEnNLFaHL------tV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~------------------------ 122 (231)
T COG3840 73 VSMLFQENNLFAHL------TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGF------------------------ 122 (231)
T ss_pred hhhhhhccccchhh------hhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhH------------------------
Confidence 99999999999999 999999999666433455667788899999999762
Q ss_pred CCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEe
Q psy91 234 EKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDI 313 (541)
Q Consensus 234 ~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i 313 (541)
.++.+..+|||++||++++++++.
T Consensus 123 -------------------------------------------------------~~RLP~~LSGGqRQRvALARclvR- 146 (231)
T COG3840 123 -------------------------------------------------------LKRLPGELSGGQRQRVALARCLVR- 146 (231)
T ss_pred -------------------------------------------------------hhhCccccCchHHHHHHHHHHHhc-
Confidence 234566799999999999999998
Q ss_pred eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 314 EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 314 ~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.-.++++|||..- +..-+...+...+.+... .+.|+.+++|..+ +..++..++-+++
T Consensus 147 -----~~PilLLDEPFsA-----------LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~ 204 (231)
T COG3840 147 -----EQPILLLDEPFSA-----------LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLD 204 (231)
T ss_pred -----cCCeEEecCchhh-----------cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEe
Confidence 8899999999432 223344466666666654 3678888998866 4456777777775
No 39
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.90 E-value=2.1e-24 Score=223.92 Aligned_cols=197 Identities=18% Similarity=0.225 Sum_probs=150.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++++++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|+.+ .... ..
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~---i~g~~i----~~~~--~~ 72 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR---FHGTDV----SRLH--AR 72 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CCCC--HH
Confidence 378999999999889999999999 9999999999999999955 57789999 888733 2211 23
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccc----cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP----EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~----~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.++||+|+..++|++ ||.||+.|+... ......+..+++.++++.+|+.+
T Consensus 73 ~r~i~~v~Q~~~l~p~~------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------------------ 128 (353)
T PRK10851 73 DRKVGFVFQHYALFRHM------TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH------------------ 128 (353)
T ss_pred HCCEEEEecCcccCCCC------cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch------------------
Confidence 35799999999999999 999999987321 11233444556777777777643
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++++..+|+|++|+++|
T Consensus 129 -------------------------------------------------------------~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 129 -------------------------------------------------------------LADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred -------------------------------------------------------------hhhCChhhCCHHHHHHHHH
Confidence 2233456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++++|||..|.+..... .+.+.|.+..+. +.++++.+|+.+.. ..+..++.+
T Consensus 148 ArAL~~------~P~llLLDEP~s~LD~~~r~-----------~l~~~L~~l~~~~g~tii~vTHd~~ea-~~~~Dri~v 209 (353)
T PRK10851 148 ARALAV------EPQILLLDEPFGALDAQVRK-----------ELRRWLRQLHEELKFTSVFVTHDQEEA-MEVADRVVV 209 (353)
T ss_pred HHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEE
Confidence 999999 99999999997776554432 667777776654 78899999987643 345666666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 210 l~ 211 (353)
T PRK10851 210 MS 211 (353)
T ss_pred EE
Confidence 54
No 40
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-24 Score=224.51 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=148.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++|++++|+++.+|+++||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~---~~g~~i----~~~~--~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF---IGEKRM----NDVP--PA 73 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEEC----CCCC--Hh
Confidence 478999999999889999999999 9999999999999999955 57789999 888732 2111 12
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||+|+..+++++ ||.||+.|+....+....+..+++.++++.+|+.+
T Consensus 74 ~~~i~~v~Q~~~l~~~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---------------------- 125 (369)
T PRK11000 74 ERGVGMVFQSYALYPHL------SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH---------------------- 125 (369)
T ss_pred HCCEEEEeCCcccCCCC------CHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 35799999999999999 99999998732122233344456667777776643
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|++.|++++
T Consensus 126 ---------------------------------------------------------~~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 126 ---------------------------------------------------------LLDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred ---------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHH
Confidence 12334557899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 149 ~~------~P~lLLLDEPts~LD~~~~~-----------~l~~~L~~l~~~~g~tvI~vTHd~~~~-~~~~d~i~vl~ 208 (369)
T PRK11000 149 VA------EPSVFLLDEPLSNLDAALRV-----------QMRIEISRLHKRLGRTMIYVTHDQVEA-MTLADKIVVLD 208 (369)
T ss_pred hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHHhCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 98 99999999998776554442 566666666543 78899999998733 34566666664
No 41
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3e-24 Score=211.26 Aligned_cols=201 Identities=19% Similarity=0.228 Sum_probs=146.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+.......+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~~~-~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL---IDGEDISG-LSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccc-cChhhHHHHh
Confidence 46889999999888999999999 9999999999999999955 46789999 88873211 1100012334
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++||+|+..+++.+ |+.+|+.++.... .....+..+++..+++.+|+.+
T Consensus 77 ~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 128 (235)
T cd03261 77 RRMGMLFQSGALFDSL------TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG---------------------- 128 (235)
T ss_pred cceEEEccCcccCCCC------cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch----------------------
Confidence 5799999999999989 9999998762111 1223333445566666666543
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|++.|++++
T Consensus 129 ---------------------------------------------------------~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 129 ---------------------------------------------------------AEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred ---------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHH
Confidence 11233456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|-+..+.. .+.++|.+..+ .++++++.+|+++.. ..++.++.++.
T Consensus 152 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvi~vsH~~~~~-~~~~d~v~~l~ 211 (235)
T cd03261 152 AL------DPELLLYDEPTAGLDPIASG-----------VIDDLIRSLKKELGLTSIMVTHDLDTA-FAIADRIAVLY 211 (235)
T ss_pred hc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEecCHHHH-HHhcCEEEEEE
Confidence 98 99999999998887665553 67777777655 378999999998743 33556666653
No 42
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.89 E-value=2.8e-24 Score=209.01 Aligned_cols=199 Identities=21% Similarity=0.256 Sum_probs=143.9
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc-
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK- 146 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~- 146 (541)
+.++||++.|++ +.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. .+...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~~~~-~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR---VDGTDISK-LSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEE---ECCEehhh-cchhHH
Confidence 468899999986 68999999999 9999999999999999955 46789999 88873211 01000
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...+++.++|++|+..+++.+ |+.||+.++....+.......+.+..+++.+|+..
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 132 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDL------TALENVELPLLLAGVPKKERRERAEELLERVGLGD------------------ 132 (218)
T ss_pred HHHHhhcEEEEeeccccCCCC------cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch------------------
Confidence 111345799999999999888 99999987632111122223344556666666532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|++.|
T Consensus 133 -------------------------------------------------------------~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03255 133 -------------------------------------------------------------RLNHYPSELSGGQQQRVAI 151 (218)
T ss_pred -------------------------------------------------------------hhhcChhhcCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..... .+.+++.+..+ .++++++.+|+.+... +..++.+
T Consensus 152 a~al~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~--~~d~v~~ 212 (218)
T cd03255 152 ARALAN------DPKIILADEPTGNLDSETGK-----------EVMELLRELNKEAGTTIVVVTHDPELAE--YADRIIE 212 (218)
T ss_pred HHHHcc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCeEEEEECCHHHHh--hhcEEEE
Confidence 999999 99999999998886655543 67777777655 4789999999987643 5666655
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 213 l 213 (218)
T cd03255 213 L 213 (218)
T ss_pred e
Confidence 5
No 43
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.89 E-value=4.6e-24 Score=223.93 Aligned_cols=199 Identities=18% Similarity=0.255 Sum_probs=153.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|.. +.....+..
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~---l~G~~----i~~~~~~~~ 75 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL---VAGDD----VEALSARAA 75 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE---ECCEE----cCcCCHHHH
Confidence 588999999999999999999999 9999999999999999955 57789999 88873 222222334
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccccc--chh--hHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--QVH--RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~~~--~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.+|||+|+..+++.+ ||.||+.+++.+. ... .....+++.++++.+|+.+.
T Consensus 76 ~~~ig~v~q~~~l~~~~------tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~----------------- 132 (402)
T PRK09536 76 SRRVASVPQDTSLSFEF------DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF----------------- 132 (402)
T ss_pred hcceEEEccCCCCCCCC------CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-----------------
Confidence 56799999999999899 9999999875432 111 23344566777777777541
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
.++.+..+|+|++|++.|
T Consensus 133 --------------------------------------------------------------~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 133 --------------------------------------------------------------ADRPVTSLSGGERQRVLL 150 (402)
T ss_pred --------------------------------------------------------------hcCChhhCCHHHHHHHHH
Confidence 123355689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +|+++|+|||..|.+..... .+.++|.+..+.+.++++.+|+++... ++..++.++
T Consensus 151 ArAL~~------~P~iLLLDEPtsgLD~~~~~-----------~l~~lL~~l~~~g~TIIivsHdl~~~~-~~adrii~l 212 (402)
T PRK09536 151 ARALAQ------ATPVLLLDEPTASLDINHQV-----------RTLELVRRLVDDGKTAVAAIHDLDLAA-RYCDELVLL 212 (402)
T ss_pred HHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEECCHHHHH-HhCCEEEEE
Confidence 999999 99999999998887766553 677777777666789999999987553 355555555
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 213 ~ 213 (402)
T PRK09536 213 A 213 (402)
T ss_pred E
Confidence 3
No 44
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=5.3e-24 Score=219.80 Aligned_cols=199 Identities=20% Similarity=0.213 Sum_probs=150.4
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|..+ .... ..
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~---i~G~~~----~~~~-~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT---VLGVPV----PARA-RL 111 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEE---ECCEEC----Ccch-HH
Confidence 4699999999999999999999999 9999999999999999955 57889999 888732 2111 23
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+||++|+..+++.+ |+.||+.+.....+....+..+++..+++.+|+..
T Consensus 112 ~~~~ig~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~--------------------- 164 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEF------TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES--------------------- 164 (340)
T ss_pred HhccEEEEeCCccCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch---------------------
Confidence 355799999999999999 99999976311111222233344555566555532
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+..+..+|+|++|++.|+++
T Consensus 165 ----------------------------------------------------------~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 165 ----------------------------------------------------------KADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred ----------------------------------------------------------hhCCChhhCCHHHHHHHHHHHH
Confidence 1233455689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+++|+|||..|.+..... ++.++|.+..+.++++++.+|+++.. ..++.++.++.
T Consensus 187 L~~------~P~lLiLDEPt~gLD~~~r~-----------~l~~~l~~l~~~g~tilisSH~l~e~-~~~~d~i~il~ 246 (340)
T PRK13536 187 LIN------DPQLLILDEPTTGLDPHARH-----------LIWERLRSLLARGKTILLTTHFMEEA-ERLCDRLCVLE 246 (340)
T ss_pred Hhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHH-HHhCCEEEEEE
Confidence 998 99999999998887765553 77777877766688999999988743 34667777663
No 45
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.89 E-value=4.2e-24 Score=207.46 Aligned_cols=200 Identities=19% Similarity=0.258 Sum_probs=143.3
Q ss_pred eeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++|+++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. ........
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~~~-~~~~~~~~ 77 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR---FNGQDLTR-LRGREIPF 77 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEehhh-cChhHHHH
Confidence 678999999964 46999999999 9999999999999999955 46789999 88873211 11111112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++.+ |+.||+.++....+.......+++.++++.+|+..
T Consensus 78 ~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------------- 130 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDR------TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG--------------------- 130 (216)
T ss_pred HHHhceEEecCccccccc------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh---------------------
Confidence 345799999999999989 99999987621111122233345566666666532
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++.+..+|+|++|++.|+++
T Consensus 131 ----------------------------------------------------------~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 131 ----------------------------------------------------------KAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred ----------------------------------------------------------hhhCChhhCCHHHHHHHHHHHH
Confidence 1122345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|.+..+.. .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 153 l~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~vsH~~~~~~-~~~d~i~~l 211 (216)
T TIGR00960 153 IVH------KPPLLLADEPTGNLDPELSR-----------DIMRLFEEFNRRGTTVLVATHDINLVE-TYRHRTLTL 211 (216)
T ss_pred Hhc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 999 99999999998887655543 566666665555788999999987443 344555554
No 46
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.8e-24 Score=199.00 Aligned_cols=196 Identities=19% Similarity=0.266 Sum_probs=158.6
Q ss_pred eeeecccccccccc-eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHRKS-VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~-iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+++.+++++|+... +++||||++ +|+|||||||||+||+| +..|++|.|+ ++|-++ ...+ ...
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~---idg~d~----~~~p-~~v 73 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT---IDGVDT----VRDP-SFV 73 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE---Eeeccc----ccCh-HHH
Confidence 67889999999876 999999998 99999999999999999 6789999999 777632 2222 244
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|.++.+..++..+ |++||+.|-....++.+.+..++++++.+.+++..+.|
T Consensus 74 rr~IGVl~~e~glY~Rl------T~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~------------------- 128 (245)
T COG4555 74 RRKIGVLFGERGLYARL------TARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD------------------- 128 (245)
T ss_pred hhhcceecCCcChhhhh------hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-------------------
Confidence 56899999989999999 99999987534456677788888888888887765322
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+....+|.|++|+|.|++++
T Consensus 129 ------------------------------------------------------------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 129 ------------------------------------------------------------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ------------------------------------------------------------HHHhhhchhhHHHHHHHHHH
Confidence 23345688999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +|.++|+|||..|.++.... .|.+++.+....+|.+++++|.+.- ...++.+|.+|
T Consensus 149 vh------~P~i~vlDEP~sGLDi~~~r-----------~~~dfi~q~k~egr~viFSSH~m~E-vealCDrvivl 206 (245)
T COG4555 149 VH------DPSILVLDEPTSGLDIRTRR-----------KFHDFIKQLKNEGRAVIFSSHIMQE-VEALCDRVIVL 206 (245)
T ss_pred hc------CCCeEEEcCCCCCccHHHHH-----------HHHHHHHHhhcCCcEEEEecccHHH-HHHhhheEEEE
Confidence 99 99999999999998876654 6778888888889999999998762 23477777765
No 47
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=6.5e-24 Score=206.75 Aligned_cols=196 Identities=18% Similarity=0.237 Sum_probs=144.3
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|++++|+++.+|+++||++ ||+|||||||||||++|+| .+.+|+|. ++|..+ .... ...+
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~-~~~~ 72 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT---VAGHDV----VREP-REVR 72 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEec----CcCh-HHHh
Confidence 46889999999889999999999 9999999999999999965 46789999 888732 1111 2234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++....+....+..+.+..+++.+|+..
T Consensus 73 ~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 123 (220)
T cd03265 73 RRIGIVFQDLSVDDEL------TGWENLYIHARLYGVPGAERRERIDELLDFVGLLE----------------------- 123 (220)
T ss_pred hcEEEecCCccccccC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------------------
Confidence 5799999999999889 99999987521111222233345566666666532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..+..+..+|+|++|++.|+++++
T Consensus 124 --------------------------------------------------------~~~~~~~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 124 --------------------------------------------------------AADRLVKTYSGGMRRRLEIARSLV 147 (220)
T ss_pred --------------------------------------------------------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 112335568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.++|.+..+. +.++++.+|+.+... .+..++.++
T Consensus 148 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvi~~tH~~~~~~-~~~d~i~~l 205 (220)
T cd03265 148 H------RPEVLFLDEPTIGLDPQTRA-----------HVWEYIEKLKEEFGMTILLTTHYMEEAE-QLCDRVAII 205 (220)
T ss_pred c------CCCEEEEcCCccCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 8 99999999998886665543 666777766554 788999999877433 244555554
No 48
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=7.8e-24 Score=205.14 Aligned_cols=195 Identities=19% Similarity=0.249 Sum_probs=142.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|++++|+++.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ .... ..+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~~~~--~~~ 71 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL---IDGRDV----TGVP--PER 71 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEEc----CcCc--hhh
Confidence 46789999998888999999999 9999999999999999955 56789999 888732 1111 224
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++||+|+..+++.+ |+.+|+.++............+.+..+++.+|+..
T Consensus 72 ~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 122 (213)
T cd03259 72 RNIGMVFQDYALFPHL------TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG----------------------- 122 (213)
T ss_pred ccEEEEcCchhhccCC------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 5799999999888888 99999987521111122222334555555555432
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|++.|+++++
T Consensus 123 --------------------------------------------------------~~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 123 --------------------------------------------------------LLNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred --------------------------------------------------------hhhcChhhCCHHHHHHHHHHHHHh
Confidence 112334568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..+.. .+.+++.+..+ .++++++.+|+.+... .+..++.++
T Consensus 147 ~------~p~~lllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~v~~l 204 (213)
T cd03259 147 R------EPSLLLLDEPLSALDAKLRE-----------ELREELKELQRELGITTIYVTHDQEEAL-ALADRIAVM 204 (213)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEecCHHHHH-HhcCEEEEE
Confidence 8 99999999998887665543 66677776654 4788999999877433 345555555
No 49
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=9e-24 Score=218.89 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=148.2
Q ss_pred eeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|.++||+++|+ .+.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+.. ......
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~---~~g~~i~~-~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL---VDGQDLTA-LSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEECCc-CCHHHH
Confidence 67899999997 467999999999 9999999999999999955 57789999 88873211 111111
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..++.+|||+|+..+++.+ ||.+|+.++....+....+..+++..+++.+|+.+
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------------------- 132 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSR------TVFDNVALPLELAGTPKAEIKARVTELLELVGLSD------------------- 132 (343)
T ss_pred HHHhcCEEEEeCCCccCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------------------
Confidence 12346799999999999999 99999987622122233334455666677666643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 133 ------------------------------------------------------------~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 133 ------------------------------------------------------------KADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred ------------------------------------------------------------hhhCChhhCCHHHHHHHHHH
Confidence 11233456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||..|.+..+.. .+.++|.+..+. +.++++.+|+++... .++.++.++
T Consensus 153 raL~~------~p~iLlLDEPts~LD~~~~~-----------~l~~~L~~l~~~~g~tiilvtH~~~~i~-~~~d~v~~l 214 (343)
T PRK11153 153 RALAS------NPKVLLCDEATSALDPATTR-----------SILELLKDINRELGLTIVLITHEMDVVK-RICDRVAVI 214 (343)
T ss_pred HHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887655543 667777776554 789999999987543 456666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 215 ~ 215 (343)
T PRK11153 215 D 215 (343)
T ss_pred E
Confidence 3
No 50
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=8.2e-24 Score=219.41 Aligned_cols=194 Identities=16% Similarity=0.153 Sum_probs=143.7
Q ss_pred ccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc-ccccccEEEE
Q psy91 87 EQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV-RGRQYPWGVV 157 (541)
Q Consensus 87 ~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~~~~~g~V 157 (541)
+.|+++.+|+++||+| +|+|||||||||||++| +..++.|+|+ ++|..+.. .+.... ..+++.++||
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~---i~G~~i~~-~~~~~~~~~rr~~i~~v 76 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF---IDGENIMK-QSPVELREVRRKKIGMV 76 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE---ECCEECCc-CCHHHHHHHHhCcEEEE
Confidence 3577888999999999 99999999999999999 4467899999 88873321 111111 1125689999
Q ss_pred eCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCC
Q psy91 158 EGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGS 237 (541)
Q Consensus 158 ~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~ 237 (541)
+|+..++|++ ||+||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 77 ~Q~~~l~~~~------TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~----------------------------- 121 (363)
T TIGR01186 77 FQQFALFPHM------TILQNTSLGPELLGWPEQERKEKALELLKLVGLEE----------------------------- 121 (363)
T ss_pred ECCCcCCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-----------------------------
Confidence 9999999999 99999998732233444555667778888887753
Q ss_pred CCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecC
Q psy91 238 IPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERG 317 (541)
Q Consensus 238 ~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~g 317 (541)
+.++.+..+|+|++|++.|+++++.
T Consensus 122 --------------------------------------------------~~~~~p~~LSGGq~QRV~lARAL~~----- 146 (363)
T TIGR01186 122 --------------------------------------------------YEHRYPDELSGGMQQRVGLARALAA----- 146 (363)
T ss_pred --------------------------------------------------hhhCChhhCCHHHHHHHHHHHHHhc-----
Confidence 1223455689999999999999999
Q ss_pred eeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 318 VKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 318 v~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++++|+|||..+-+.... ..+.+.+.+..+ .++|+++.+|+++.. .++..++.++.
T Consensus 147 -~p~iLLlDEP~saLD~~~r-----------~~l~~~l~~l~~~~~~Tii~vTHd~~ea-~~~~drI~vl~ 204 (363)
T TIGR01186 147 -EPDILLMDEAFSALDPLIR-----------DSMQDELKKLQATLQKTIVFITHDLDEA-IRIGDRIVIMK 204 (363)
T ss_pred -CCCEEEEeCCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEe
Confidence 9999999999766443333 266666766654 478999999998754 33556666653
No 51
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=9.5e-24 Score=204.25 Aligned_cols=195 Identities=17% Similarity=0.290 Sum_probs=143.3
Q ss_pred eeeecccccccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
|.++++++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .... ...++
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~-~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR---IDGQDV----LKQP-QKLRR 72 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEE---ECCCcc----ccch-HHHHh
Confidence 46889999998888999999998 9999999999999999955 57789999 888732 2111 23356
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
.++|++|+..+++.+ |+.+|+.+.....+....+..+.+..+++.+|+.+.
T Consensus 73 ~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------------------- 123 (211)
T cd03264 73 RIGYLPQEFGVYPNF------TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR----------------------- 123 (211)
T ss_pred heEEecCCCcccccC------CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH-----------------------
Confidence 799999999999888 999999875211112222233445556666655321
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
.+..+..+|+|++|++.|+++++.
T Consensus 124 --------------------------------------------------------~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 124 --------------------------------------------------------AKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred --------------------------------------------------------HhCchhhCCHHHHHHHHHHHHHhc
Confidence 122345689999999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|-+..+.. ++.++|.+..+ +.++++.+|+.+... .+..++.++
T Consensus 148 ------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~vsH~~~~~~-~~~d~i~~l 202 (211)
T cd03264 148 ------DPSILIVDEPTAGLDPEERI-----------RFRNLLSELGE-DRIVILSTHIVEDVE-SLCNQVAVL 202 (211)
T ss_pred ------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHhC-CCEEEEEcCCHHHHH-HhCCEEEEE
Confidence 99999999998887766553 66777776655 478889999887543 344555555
No 52
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.88 E-value=1.3e-23 Score=214.44 Aligned_cols=197 Identities=20% Similarity=0.218 Sum_probs=145.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||++.|+++.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ .... ...
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~-~~~ 75 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT---VLGEPV----PSRA-RLA 75 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----cccH-HHH
Confidence 589999999999889999999999 9999999999999999955 57789999 888732 1111 223
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+||++|+..+++.+ |+.+|+.+.....+....+..+++..+++.+|+.+
T Consensus 76 ~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~---------------------- 127 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEF------TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES---------------------- 127 (303)
T ss_pred hhcEEEEeccccCCcCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh----------------------
Confidence 45799999999999889 99999875311111222223334455555555532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 128 ---------------------------------------------------------~~~~~~~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 128 ---------------------------------------------------------KADVRVALLSGGMKRRLTLARAL 150 (303)
T ss_pred ---------------------------------------------------------HhcCchhhCCHHHHHHHHHHHHH
Confidence 11233456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|.+..... .+.+.|.+..+.+.++++.+|+++... .++.++.++
T Consensus 151 ~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~l~~~~~~g~til~~sH~~~~~~-~~~d~i~~l 208 (303)
T TIGR01288 151 IN------DPQLLILDEPTTGLDPHARH-----------LIWERLRSLLARGKTILLTTHFMEEAE-RLCDRLCVL 208 (303)
T ss_pred hc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-HhCCEEEEE
Confidence 98 99999999998887665543 666677766556889999999987443 355666555
No 53
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.88 E-value=1.8e-23 Score=205.34 Aligned_cols=197 Identities=12% Similarity=0.157 Sum_probs=141.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-ccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~ 150 (541)
+.++||++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL---LDGQDI----TKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEec----ccCCHhHHH
Confidence 46889999999889999999999 9999999999999999955 56789999 888732 11111 112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.+...............+..+++.+|+..
T Consensus 74 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 125 (232)
T cd03218 74 RLGIGYLPQEASIFRKL------TVEENILAVLEIRGLSKKEREEKLEELLEEFHITH---------------------- 125 (232)
T ss_pred hccEEEecCCccccccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 34699999999999989 99999987521111112222334444555544422
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 126 ---------------------------------------------------------~~~~~~~~LS~G~~qrl~la~al 148 (232)
T cd03218 126 ---------------------------------------------------------LRKSKASSLSGGERRRVEIARAL 148 (232)
T ss_pred ---------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHH
Confidence 12334556899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..+.. .+.++|.+..+.+.++++.+|+.+.. ..+..++.++
T Consensus 149 ~~------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~tii~~sH~~~~~-~~~~d~i~~l 206 (232)
T cd03218 149 AT------NPKFLLLDEPFAGVDPIAVQ-----------DIQKIIKILKDRGIGVLITDHNVRET-LSITDRAYII 206 (232)
T ss_pred hc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 98 99999999998876655543 66677766655678899999987633 2345566555
No 54
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.5e-23 Score=220.00 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=156.3
Q ss_pred ccccccccccccCCCCCCCCCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCC
Q psy91 56 LTFPEAYRIKMTPDGGSCATDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGD 127 (541)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~ 127 (541)
+.+.+-|+++..............+.+.++.+.|+...+|+++||+| +|+|||||||||||++|++ .+.+|+
T Consensus 5 i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~ 84 (400)
T PRK10070 5 LEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ 84 (400)
T ss_pred EEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence 44455555554432111111233567778888888777999999999 9999999999999999944 578899
Q ss_pred eeecccCCccceeccccccc-ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCC
Q psy91 128 RKVPNVNGSNTVIEVAGTKV-RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGE 206 (541)
Q Consensus 128 i~~~~~~G~~~~~~~~~~~~-~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL 206 (541)
|+ ++|..+.. .+.... +.+++.++||+|+..+++++ |+.||+.++....+....+..+++.++++.+|+
T Consensus 85 I~---i~G~~i~~-~~~~~l~~~~~~~igyv~Q~~~l~~~~------Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL 154 (400)
T PRK10070 85 VL---IDGVDIAK-ISDAELREVRRKKIAMVFQSFALMPHM------TVLDNTAFGMELAGINAEERREKALDALRQVGL 154 (400)
T ss_pred EE---ECCEECCc-CCHHHHHHHHhCCEEEEECCCcCCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 99 88873311 111111 11235799999999999999 999999886221222333444566677777777
Q ss_pred CCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccc
Q psy91 207 SGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 207 ~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+
T Consensus 155 ~~------------------------------------------------------------------------------ 156 (400)
T PRK10070 155 EN------------------------------------------------------------------------------ 156 (400)
T ss_pred Ch------------------------------------------------------------------------------
Confidence 43
Q ss_pred cCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcce
Q psy91 287 LYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTT 365 (541)
Q Consensus 287 ~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~ 365 (541)
+.++.+..+|+|++|++.|+++++. +++++|+|||..|.+..... ++.+.|.+..+ .++++
T Consensus 157 -~~~~~~~~LSgGq~QRv~LArAL~~------~P~iLLLDEPts~LD~~~r~-----------~l~~~L~~l~~~~g~TI 218 (400)
T PRK10070 157 -YAHSYPDELSGGMRQRVGLARALAI------NPDILLMDEAFSALDPLIRT-----------EMQDELVKLQAKHQRTI 218 (400)
T ss_pred -hhhcCcccCCHHHHHHHHHHHHHhc------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHHHHCCCeE
Confidence 1223455789999999999999998 99999999998775544432 66677776654 47899
Q ss_pred eeccccchhhhhcccceeEEEc
Q psy91 366 TIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 366 ~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+|+++.. .++..++.++.
T Consensus 219 IivTHd~~~~-~~~~Dri~vL~ 239 (400)
T PRK10070 219 VFISHDLDEA-MRIGDRIAIMQ 239 (400)
T ss_pred EEEECCHHHH-HHhCCEEEEEE
Confidence 9999998743 34556666653
No 55
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.88 E-value=1.8e-23 Score=205.75 Aligned_cols=197 Identities=19% Similarity=0.236 Sum_probs=141.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-ccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~ 150 (541)
+.++|+++.|+++.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL---FDGEDI----TGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEE---ECCEEC----CCCCHHHHH
Confidence 46789999998888999999999 9999999999999999965 46789999 888732 21111 112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccch----------hhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV----------HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~----------~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
+..++|++|+..+++.+ |+.+|+.++...... ......+.+.++++.+|+.+
T Consensus 74 ~~~i~~v~q~~~l~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------ 135 (236)
T cd03219 74 RLGIGRTFQIPRLFPEL------TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD------------ 135 (236)
T ss_pred hcCEEEEecccccccCC------CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc------------
Confidence 34699999999999999 999999876211110 01112223344444444322
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
..+..+..+|+|+
T Consensus 136 -------------------------------------------------------------------~~~~~~~~LSgG~ 148 (236)
T cd03219 136 -------------------------------------------------------------------LADRPAGELSYGQ 148 (236)
T ss_pred -------------------------------------------------------------------hhhCChhhCCHHH
Confidence 2234456789999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+.
T Consensus 149 ~qrv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~vsH~~~~~~-~~~ 210 (236)
T cd03219 149 QRRLEIARALAT------DPKLLLLDEPAAGLNPEETE-----------ELAELIRELRERGITVLLVEHDMDVVM-SLA 210 (236)
T ss_pred HHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHH-HhC
Confidence 999999999998 99999999998887665543 666777766556789999999887543 345
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 211 d~i~~l 216 (236)
T cd03219 211 DRVTVL 216 (236)
T ss_pred CEEEEE
Confidence 566555
No 56
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.9e-24 Score=193.74 Aligned_cols=187 Identities=19% Similarity=0.285 Sum_probs=152.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++||+++|+++.+|+++|++| +|+|||||||||||.++ +...++|+|+ ++|. .+...+....+
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~---i~g~----~~~~~~s~~LA 74 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT---IDGL----ELTSTPSKELA 74 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEE---Eeee----ecccCChHHHH
Confidence 67899999999999999999999 99999999999999999 7788999999 8888 44455555667
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccc--hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+.++.+-|+....-.+ ||++-+.|||+|.+ ....+.+..++++++.++|.++
T Consensus 75 k~lSILkQ~N~i~~rl------TV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l-------------------- 128 (252)
T COG4604 75 KKLSILKQENHINSRL------TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL-------------------- 128 (252)
T ss_pred HHHHHHHhhchhhhee------EHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch--------------------
Confidence 7788999999998899 99999999998864 4556777788888888877652
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.+++...+||||+||.-|+..
T Consensus 129 -----------------------------------------------------------~dryLd~LSGGQrQRAfIAMV 149 (252)
T COG4604 129 -----------------------------------------------------------SDRYLDELSGGQRQRAFIAMV 149 (252)
T ss_pred -----------------------------------------------------------HHHhHHhcccchhhhhhhhee
Confidence 334455689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhh
Q psy91 310 SMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEE 376 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~ 376 (541)
... +-.+.++||| ...|-.... ++++.|+.... .++|++++.|++.+..
T Consensus 150 laQ------dTdyvlLDEPLNNLDmkHsv------------~iMk~Lrrla~el~KtiviVlHDINfAS 200 (252)
T COG4604 150 LAQ------DTDYVLLDEPLNNLDMKHSV------------QIMKILRRLADELGKTIVVVLHDINFAS 200 (252)
T ss_pred eec------cCcEEEecCcccccchHHHH------------HHHHHHHHHHHHhCCeEEEEEecccHHH
Confidence 988 8999999999 444433322 56666766644 4899999999987654
No 57
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.88 E-value=3.6e-23 Score=213.61 Aligned_cols=202 Identities=20% Similarity=0.255 Sum_probs=161.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+.++++++.|++..++++|||+| ||+|.||||||||+++| ...|++|+|+ ++|+.+.. ..+..
T Consensus 2 ~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~---v~G~~v~~---~sP~d 75 (501)
T COG3845 2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR---VDGKEVRI---KSPRD 75 (501)
T ss_pred CceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEE---ECCEEecc---CCHHH
Confidence 45789999999999999999999999 99999999999999999 5679999999 99984322 22334
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc---chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE---QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~---~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
..+..||+|+|++.|++.+ ||.||+.++..+. ........+++.++.+..|+.=
T Consensus 76 A~~~GIGMVhQHF~Lv~~l------TV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v----------------- 132 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTL------TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV----------------- 132 (501)
T ss_pred HHHcCCcEEeecccccccc------chhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-----------------
Confidence 5667899999999999999 9999999984332 2344556666666676666631
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
-++.++.++|-|++|+++
T Consensus 133 --------------------------------------------------------------dp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 133 --------------------------------------------------------------DPDAKVADLSVGEQQRVE 150 (501)
T ss_pred --------------------------------------------------------------CccceeecCCcchhHHHH
Confidence 234566778899999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|-++++. +++++|+|||+.-.+.... +.+.+.+....+.++++++.+|.++ +.++++.+++|
T Consensus 151 IlKaLyr------~a~iLILDEPTaVLTP~E~-----------~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTV 212 (501)
T COG3845 151 ILKALYR------GARLLILDEPTAVLTPQEA-----------DELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTV 212 (501)
T ss_pred HHHHHhc------CCCEEEEcCCcccCCHHHH-----------HHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEE
Confidence 9999999 9999999999765443222 2667778888889999999999977 55778889888
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+-
T Consensus 213 LR 214 (501)
T COG3845 213 LR 214 (501)
T ss_pred Ee
Confidence 74
No 58
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-23 Score=210.23 Aligned_cols=199 Identities=20% Similarity=0.196 Sum_probs=146.4
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.++|+++.|+ .+.+|+++||+| ||+||||||||||+++|+| .+.+|+|+ ++|..+ ......
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~ 75 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK---VMGREV----NAENEK 75 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE---ECCEEC----CCCCHH
Confidence 4689999999996 567999999999 9999999999999999955 57789999 888732 222222
Q ss_pred cccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||+|++. .++.. ||.+|+.|+....+.......+++..+++.+|+.+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------------------- 130 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSS------TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD------------------- 130 (274)
T ss_pred HHHhhEEEEecChhhhhccC------cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-------------------
Confidence 33457999999863 44556 99999988632222233333445666677666643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 131 ------------------------------------------------------------~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 131 ------------------------------------------------------------FRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred ------------------------------------------------------------HhcCChhhCCHHHHHHHHHH
Confidence 12234557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... ++.+.|.+..+.+.++++.+|+++... .+..++.++
T Consensus 151 raL~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tili~tH~~~~~~-~~~d~i~~l 211 (274)
T PRK13647 151 GVLAM------DPDVIVLDEPMAYLDPRGQE-----------TLMEILDRLHNQGKTVIVATHDVDLAA-EWADQVIVL 211 (274)
T ss_pred HHHHc------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99999 99999999998887665543 677777776555889999999987543 345566555
No 59
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-23 Score=210.80 Aligned_cols=198 Identities=16% Similarity=0.157 Sum_probs=149.1
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.+.++|+++.|++ +.+|+|+||+| ||+||||||||||+++|+| .+.+|+|+ ++|..+ ....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i----~~~~ 75 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII---IDGDLL----TEEN 75 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEEC----CcCc
Confidence 36899999999974 45999999999 9999999999999999955 57899999 888732 2212
Q ss_pred cccccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.+|||+|++ .+++.. ||.+|+.|+....+....+..+++..+++.+|+.+.
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---------------- 133 (279)
T PRK13650 76 VWDIRHKIGMVFQNPDNQFVGA------TVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDF---------------- 133 (279)
T ss_pred HHHHHhhceEEEcChHHhcccc------cHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhH----------------
Confidence 223345799999997 466677 999999887322233344445567777777777431
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
.++.+..+|+|++|++.
T Consensus 134 ---------------------------------------------------------------~~~~~~~LSgGq~qrv~ 150 (279)
T PRK13650 134 ---------------------------------------------------------------KEREPARLSGGQKQRVA 150 (279)
T ss_pred ---------------------------------------------------------------hhCCcccCCHHHHHHHH
Confidence 12234568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvn 384 (541)
|+++++. +++++|+|||..|.+..... .+.++|.+..+. ++++++.+|+++... .+.++.
T Consensus 151 lAral~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tilivtH~~~~~~--~~dri~ 211 (279)
T PRK13650 151 IAGAVAM------RPKIIILDEATSMLDPEGRL-----------ELIKTIKGIRDDYQMTVISITHDLDEVA--LSDRVL 211 (279)
T ss_pred HHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCEEE
Confidence 9999999 99999999998887655443 677777777654 889999999987653 466666
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 212 ~l 213 (279)
T PRK13650 212 VM 213 (279)
T ss_pred EE
Confidence 65
No 60
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.1e-23 Score=204.95 Aligned_cols=201 Identities=19% Similarity=0.246 Sum_probs=144.0
Q ss_pred Cceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 78 DYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 78 ~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
+.+.+++|++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|+.+.. .+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~i~~-~~~~ 79 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI---FNGQPMSK-LSSA 79 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEcCc-CCHH
Confidence 45899999999974 46999999999 9999999999999999955 46789999 88873211 1111
Q ss_pred ccc-cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVR-GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~-~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
... .+++.++|++|+..+++.+ |+.+|+.++.........+..+++..+++.+|+.+
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------------- 137 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDF------TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH---------------- 137 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch----------------
Confidence 101 1235699999999999888 99999987521111222233345666677666543
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..++.+..+|+|++|++
T Consensus 138 ---------------------------------------------------------------~~~~~~~~LSgG~~qrl 154 (233)
T PRK11629 138 ---------------------------------------------------------------RANHRPSELSGGERQRV 154 (233)
T ss_pred ---------------------------------------------------------------hhhCChhhCCHHHHHHH
Confidence 11223456899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ .+.++++.+|+.+.... +. ++
T Consensus 155 ~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~-~~ 215 (233)
T PRK11629 155 AIARALVN------NPRLVLADEPTGNLDARNAD-----------SIFQLLGELNRLQGTAFLVVTHDLQLAKR-MS-RQ 215 (233)
T ss_pred HHHHHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hC-EE
Confidence 99999998 99999999998887665553 66677776654 47899999999886543 33 44
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 216 ~~l 218 (233)
T PRK11629 216 LEM 218 (233)
T ss_pred EEE
Confidence 443
No 61
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.5e-23 Score=204.23 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=143.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|..+ .... ..
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~--~~ 72 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL---FGGEDA----TDVP--VQ 72 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----CcCC--cc
Confidence 378999999999888999999999 9999999999999999955 46789999 888732 1111 12
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccch----hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV----HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~----~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.++||+|+..+++.+ |+.+|+.++...... ......+.+..+++.+|+..
T Consensus 73 ~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 128 (239)
T cd03296 73 ERNVGFVFQHYALFRHM------TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW------------------ 128 (239)
T ss_pred ccceEEEecCCcccCCC------CHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh------------------
Confidence 35699999999998888 999999876211111 11122234455555555432
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 129 -------------------------------------------------------------~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 129 -------------------------------------------------------------LADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred -------------------------------------------------------------hhhcChhhCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..+.. .+.++|.+..+. ++++++.+|+.+... .+..++.+
T Consensus 148 a~al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tvii~sH~~~~~~-~~~d~i~~ 209 (239)
T cd03296 148 ARALAV------EPKVLLLDEPFGALDAKVRK-----------ELRRWLRRLHDELHVTTVFVTHDQEEAL-EVADRVVV 209 (239)
T ss_pred HHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEE
Confidence 999998 99999999998886655543 667777776554 789999999987432 34556665
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 210 l~ 211 (239)
T cd03296 210 MN 211 (239)
T ss_pred EE
Confidence 53
No 62
>PRK10908 cell division protein FtsE; Provisional
Probab=99.88 E-value=2.7e-23 Score=202.66 Aligned_cols=200 Identities=17% Similarity=0.206 Sum_probs=143.0
Q ss_pred eeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++|+++.| +++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .........
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~i~~-~~~~~~~~~ 77 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW---FSGHDITR-LKNREVPFL 77 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccc-CChhHHHHH
Confidence 6789999999 6678999999999 9999999999999999955 46789999 88873211 111111123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.++.........+....+..+++.+|+.+
T Consensus 78 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 129 (222)
T PRK10908 78 RRQIGMIFQDHHLLMDR------TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD---------------------- 129 (222)
T ss_pred HhheEEEecCccccccc------cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 45799999999888888 99999987521112222233334555666665532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 130 ---------------------------------------------------------~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 130 ---------------------------------------------------------KAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred ---------------------------------------------------------hhhCCchhCCHHHHHHHHHHHHH
Confidence 11223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..+.. .+.+.|.+..+.+.++++.+|+.+.... +..++.++
T Consensus 153 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~d~i~~l 210 (222)
T PRK10908 153 VN------KPAVLLADEPTGNLDDALSE-----------GILRLFEEFNRVGVTVLMATHDIGLISR-RSYRMLTL 210 (222)
T ss_pred Hc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHHH-hCCEEEEE
Confidence 98 99999999998887655543 5666666665557889999998775432 44455555
No 63
>PLN03211 ABC transporter G-25; Provisional
Probab=99.88 E-value=7.1e-23 Score=228.38 Aligned_cols=229 Identities=19% Similarity=0.236 Sum_probs=165.1
Q ss_pred cCCcccccccc-cccccccCCCCCCCCC----CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHH
Q psy91 50 SCSPHCLTFPE-AYRIKMTPDGGSCATD----RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNS 118 (541)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~ 118 (541)
...+..+.|.+ .|+++......+.... ...-..++++++|+++.+|+|||+++ ||+|||||||||||++
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 34467789999 9998755311111100 11225678899999999999999999 9999999999999999
Q ss_pred HhcCC----CCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceeccc---cccchhhH
Q psy91 119 LFLSD----LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT---LPEQVHRK 191 (541)
Q Consensus 119 L~~~~----~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~---~~~~~~~~ 191 (541)
|+|.. .+|+|. ++|+.+ .. ..++.+|||+|++.+++.+ ||+||+.|+. ++.....+
T Consensus 114 LaG~~~~~~~sG~I~---inG~~~----~~----~~~~~i~yv~Q~~~l~~~l------TV~E~l~~~a~~~~~~~~~~~ 176 (659)
T PLN03211 114 LAGRIQGNNFTGTIL---ANNRKP----TK----QILKRTGFVTQDDILYPHL------TVRETLVFCSLLRLPKSLTKQ 176 (659)
T ss_pred HhCCCCCCceeEEEE---ECCEEC----ch----hhccceEEECcccccCCcC------CHHHHHHHHHHhCCCCCCCHH
Confidence 97653 268998 888722 11 2234689999999999999 9999998862 22223344
Q ss_pred hHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCC
Q psy91 192 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGES 271 (541)
Q Consensus 192 e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~s 271 (541)
+..++++++++.+|+.++.++.++
T Consensus 177 ~~~~~v~~~l~~lgL~~~~~t~vg-------------------------------------------------------- 200 (659)
T PLN03211 177 EKILVAESVISELGLTKCENTIIG-------------------------------------------------------- 200 (659)
T ss_pred HHHHHHHHHHHHcCChhhcCceeC--------------------------------------------------------
Confidence 555677888888888764322111
Q ss_pred cchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhh
Q psy91 272 GLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQF 351 (541)
Q Consensus 272 g~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~ 351 (541)
+.....+|+|++|+++|+++++. +++++++|||..|.+..... .+
T Consensus 201 ------------------~~~~~~LSgGerqRv~ia~aL~~------~P~iLlLDEPtsgLD~~~~~-----------~l 245 (659)
T PLN03211 201 ------------------NSFIRGISGGERKRVSIAHEMLI------NPSLLILDEPTSGLDATAAY-----------RL 245 (659)
T ss_pred ------------------CCCCCCcChhhhhHHHHHHHHHh------CCCEEEEeCCCCCcCHHHHH-----------HH
Confidence 12244689999999999999999 99999999998886655543 66
Q ss_pred hhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 352 RQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 352 ~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
.+.|.+..+.++++++.+|+.+.+...+..++.++
T Consensus 246 ~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL 280 (659)
T PLN03211 246 VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL 280 (659)
T ss_pred HHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEe
Confidence 77777766678999999998864333455555554
No 64
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.88 E-value=2.5e-23 Score=201.72 Aligned_cols=200 Identities=17% Similarity=0.246 Sum_probs=142.7
Q ss_pred eeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++|+++.| +++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. .........
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~~~~-~~~~~~~~~ 77 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR---IAGEDVNR-LRGRQLPLL 77 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEccc-CCHHHHHHH
Confidence 6789999999 4678999999999 9999999999999999955 46789999 88873211 111111123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.++....+.......+.+..+++.+|+..
T Consensus 78 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 129 (214)
T TIGR02673 78 RRRIGVVFQDFRLLPDR------TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH---------------------- 129 (214)
T ss_pred HhheEEEecChhhccCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 45799999999998888 99999987521111112222344555566655532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 130 ---------------------------------------------------------~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 130 ---------------------------------------------------------KADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred ---------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHH
Confidence 11223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..+.. .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 153 ~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~tH~~~~~~-~~~d~i~~l 210 (214)
T TIGR02673 153 VN------SPPLLLADEPTGNLDPDLSE-----------RILDLLKRLNKRGTTVIVATHDLSLVD-RVAHRVIIL 210 (214)
T ss_pred hC------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCEEEEe
Confidence 98 99999999998887665543 566667665555789999999876433 345565554
No 65
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.9e-23 Score=203.92 Aligned_cols=200 Identities=18% Similarity=0.237 Sum_probs=144.6
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|.++|+++.|+++ ++|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. ......
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL---VDGTDLTL-LSGKEL 77 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEccc-CCHHHH
Confidence 6789999999876 8999999999 9999999999999999955 46789999 88873211 010111
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++|++|+..+++.+ |+.||+.++..............+..+++.+|+.+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~------t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 132 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSR------TVFENVALPLEIAGVPKAEIEERVLELLELVGLED------------------- 132 (233)
T ss_pred HHHHhheEEEccCcccCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------------------
Confidence 12245799999999999888 99999977521111222223344555666665532
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 133 ------------------------------------------------------------~~~~~~~~LS~G~~qrv~la 152 (233)
T cd03258 133 ------------------------------------------------------------KADAYPAQLSGGQKQRVGIA 152 (233)
T ss_pred ------------------------------------------------------------hhhcChhhCCHHHHHHHHHH
Confidence 11223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... .+.+++.+..+. ++++++.+|+.+.. ..+..++.++
T Consensus 153 ~al~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tvii~sH~~~~~-~~~~d~i~~l 214 (233)
T cd03258 153 RALAN------NPKVLLCDEATSALDPETTQ-----------SILALLRDINRELGLTIVLITHEMEVV-KRICDRVAVM 214 (233)
T ss_pred HHHhc------CCCEEEecCCCCcCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 99998 99999999998887665553 777788777654 78999999987743 2344555555
No 66
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.88 E-value=2.7e-23 Score=202.53 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=141.3
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++|+++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~~~-~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL---FNGQSLSK-LSSNER 77 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEhhh-cCHhHH
Confidence 678999999974 46999999999 9999999999999999955 56789999 88873211 111111
Q ss_pred cc-ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RG-RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~-~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.. +++.++||+|+..+++.+ |++||+.++.........+..+.+.++++.+|+..
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 133 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDF------TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH------------------ 133 (221)
T ss_pred HHHHHhcEEEEecccccCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 11 225699999999999888 99999987521111112222334455555555432
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|++.|
T Consensus 134 -------------------------------------------------------------~~~~~~~~LS~G~~qrv~l 152 (221)
T TIGR02211 134 -------------------------------------------------------------RINHRPSELSGGERQRVAI 152 (221)
T ss_pred -------------------------------------------------------------hhhCChhhCCHHHHHHHHH
Confidence 1123345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..+.. .+.+.|.+..+ .++++++.+|+.+.... . .++.+
T Consensus 153 aral~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~-d~v~~ 213 (221)
T TIGR02211 153 ARALVN------QPSLVLADEPTGNLDNNNAK-----------IIFDLMLELNRELNTSFLVVTHDLELAKK-L-DRVLE 213 (221)
T ss_pred HHHHhC------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHhh-c-CEEEE
Confidence 999998 99999999998887665553 66667766654 37889999999886532 3 56665
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 214 l 214 (221)
T TIGR02211 214 M 214 (221)
T ss_pred E
Confidence 5
No 67
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.88 E-value=1.9e-23 Score=203.13 Aligned_cols=196 Identities=19% Similarity=0.228 Sum_probs=144.0
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++|+++.|+++ .+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ... .
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~-~ 73 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT---VDGFDV----VKE-P 73 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE---ECCEEc----ccC-H
Confidence 6789999999876 7999999999 9999999999999999955 46789999 888732 211 1
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++|++|+..+++.+ |+.||+.+.....+....+..+.+.++++.+|+.+.
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------------ 129 (218)
T cd03266 74 AEARRRLGFVSDSTGLYDRL------TARENLEYFAGLYGLKGDELTARLEELADRLGMEEL------------------ 129 (218)
T ss_pred HHHHhhEEEecCCcccCcCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH------------------
Confidence 23345799999999999989 999999765211122233344556666776665321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+..+..+|+|++|++.|+
T Consensus 130 -------------------------------------------------------------~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 130 -------------------------------------------------------------LDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred -------------------------------------------------------------HhhhhhhcCHHHHHHHHHH
Confidence 1123446899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 149 ral~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~tH~~~~~~-~~~d~i~~l 209 (218)
T cd03266 149 RALVH------DPPVLLLDEPTTGLDVMATR-----------ALREFIRQLRALGKCILFSTHIMQEVE-RLCDRVVVL 209 (218)
T ss_pred HHHhc------CCCEEEEcCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 99998 99999999998876655443 667777766555789999999876433 234455444
No 68
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.88 E-value=6.9e-24 Score=221.01 Aligned_cols=201 Identities=16% Similarity=0.167 Sum_probs=147.1
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecc---cccccc-
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEV---AGTKVR- 148 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~---~~~~~~- 148 (541)
.-.++.+.|+...+|+|+||+| +|+|||||||||||++|++ .+++|+|+ ++|+.....+ +....+
T Consensus 26 ~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~---idG~~~~~~i~~~~~~~l~~ 102 (382)
T TIGR03415 26 TREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVL---VKDGDGSIDVANCDAATLRR 102 (382)
T ss_pred CHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE---ECCEecccccccCCHHHHHH
Confidence 3456778899999999999999 9999999999999999944 57889999 7775100011 111111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++.++||||+..++|++ |+.||+.++....+....+...++.++++.+|+.+.
T Consensus 103 ~r~~~i~~vfQ~~~l~p~~------Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~------------------- 157 (382)
T TIGR03415 103 LRTHRVSMVFQKFALMPWL------TVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW------------------- 157 (382)
T ss_pred HhcCCEEEEECCCcCCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-------------------
Confidence 2235799999999999999 999999987322233344455567777887777541
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.+..+..+|+|++|++.|++
T Consensus 158 ------------------------------------------------------------~~~~~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 158 ------------------------------------------------------------ADKKPGELSGGMQQRVGLAR 177 (382)
T ss_pred ------------------------------------------------------------hcCChhhCCHHHHHHHHHHH
Confidence 12334568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|.+.... .++.+.|.+..+. ++++++.+|+++.. .++..++.++.
T Consensus 178 ALa~------~P~ILLlDEPts~LD~~~r-----------~~l~~~L~~l~~~~~~TII~iTHdl~e~-~~l~DrI~vl~ 239 (382)
T TIGR03415 178 AFAM------DADILLMDEPFSALDPLIR-----------TQLQDELLELQAKLNKTIIFVSHDLDEA-LKIGNRIAIME 239 (382)
T ss_pred HHhc------CCCEEEEECCCccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 9998 9999999999877554433 3666777766553 78999999998854 34566666653
No 69
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.88 E-value=2.9e-23 Score=202.15 Aligned_cols=195 Identities=16% Similarity=0.267 Sum_probs=141.9
Q ss_pred eeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++||++.|++ +.+|+++||++ ||+|||||||||||++|+| .+.+|+|. ++|..+. ... ..
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~~----~~~-~~ 72 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY---INGYSIR----TDR-KA 72 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEecc----cch-HH
Confidence 468899999987 78999999999 9999999999999999955 57789999 8887321 111 23
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++||+|+..+++.+ |+.+|+.+.............+++.++++.+|+..
T Consensus 73 ~~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------------- 125 (220)
T cd03263 73 ARQSLGYCPQFDALFDEL------TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD--------------------- 125 (220)
T ss_pred HhhhEEEecCcCCccccC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH---------------------
Confidence 345699999999999888 99999987522112222233345556666666532
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+..+..+|+|++|++.|+++
T Consensus 126 ----------------------------------------------------------~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 126 ----------------------------------------------------------KANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred ----------------------------------------------------------HHhChhhhCCHHHHHHHHHHHH
Confidence 1122344689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+... .+..++.++
T Consensus 148 l~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sH~~~~~~-~~~d~i~~l 205 (220)
T cd03263 148 LIG------GPSVLLLDEPTSGLDPASRR-----------AIWDLILEVRK-GRSIILTTHSMDEAE-ALCDRIAIM 205 (220)
T ss_pred Hhc------CCCEEEECCCCCCCCHHHHH-----------HHHHHHHHHhc-CCEEEEEcCCHHHHH-HhcCEEEEE
Confidence 998 99999999998876655443 66677776654 478899999877543 344555554
No 70
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=2.3e-23 Score=201.45 Aligned_cols=195 Identities=18% Similarity=0.223 Sum_probs=138.4
Q ss_pred eecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 82 FATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 82 ~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
++++++.|++ +.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ ........+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~~ 74 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL---VDGKDL----TKLSLKELR 74 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCEEc----ccCCHHHHH
Confidence 6788999987 78999999999 9999999999999999955 56789999 888732 211122334
Q ss_pred ccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++|++|+.. .++.+ |+.+|+.++..............+..+++.+|+..
T Consensus 75 ~~i~~~~q~~~~~~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 126 (211)
T cd03225 75 RKVGLVFQNPDDQFFGP------TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG---------------------- 126 (211)
T ss_pred hhceEEecChhhhcCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh----------------------
Confidence 57899999974 35667 99999877521111112222334445555555422
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 127 ---------------------------------------------------------~~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 127 ---------------------------------------------------------LRDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ---------------------------------------------------------hhcCCcccCCHHHHHHHHHHHHH
Confidence 11234557899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 150 ~~------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~tvi~~sH~~~~~~-~~~d~i~~l 207 (211)
T cd03225 150 AM------DPDILLLDEPTAGLDPAGRR-----------ELLELLKKLKAEGKTIIIVTHDLDLLL-ELADRVIVL 207 (211)
T ss_pred hc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 98 99999999998887665543 667777766555789999999876443 345555554
No 71
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4e-23 Score=201.17 Aligned_cols=192 Identities=20% Similarity=0.222 Sum_probs=140.5
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++|+++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~---- 69 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL---VDGEPV----T---- 69 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----c----
Confidence 468899999987 78999999999 9999999999999999955 46789999 888722 1
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.++||+|+..+++.+ |+.+|+.++....+.......+.+..+++.+|+..
T Consensus 70 -~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 123 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWL------TVLDNVALGLELQGVPKAEARERAEELLELVGLSG------------------- 123 (220)
T ss_pred -cccCcEEEEecccccccCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------------------
Confidence 1245699999999888888 99999987521111122222334555565555532
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 124 ------------------------------------------------------------~~~~~~~~LSgG~~qrl~la 143 (220)
T cd03293 124 ------------------------------------------------------------FENAYPHQLSGGMRQRVALA 143 (220)
T ss_pred ------------------------------------------------------------hhhCCcccCCHHHHHHHHHH
Confidence 11223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..+.. .+.+++.+..+ .++++++.+|+.+... .+..++.++
T Consensus 144 ~al~~------~p~lllLDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 205 (220)
T cd03293 144 RALAV------DPDVLLLDEPFSALDALTRE-----------QLQEELLDIWRETGKTVLLVTHDIDEAV-FLADRVVVL 205 (220)
T ss_pred HHHHc------CCCEEEECCCCCCCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887665543 66777776644 4788999999877432 344555554
No 72
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.8e-23 Score=200.84 Aligned_cols=193 Identities=15% Similarity=0.228 Sum_probs=141.4
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .. ..+
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~----~~~ 69 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL---FDGKPL----DI----AAR 69 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCCch----hH----HHH
Confidence 46889999998888999999999 9999999999999999965 47789999 888732 11 224
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.+.....+.......+.+.++++.+|+.+.
T Consensus 70 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------------- 121 (210)
T cd03269 70 NRIGYLPEERGLYPKM------KVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY---------------------- 121 (210)
T ss_pred ccEEEeccCCcCCcCC------cHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH----------------------
Confidence 5789999999999888 999998765211112222333445556666555321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+..+..+|+|++|++.|+++++
T Consensus 122 ---------------------------------------------------------~~~~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 122 ---------------------------------------------------------ANKRVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred ---------------------------------------------------------HhCcHhhCCHHHHHHHHHHHHHh
Confidence 11234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 145 ~------~p~~lllDEP~~~LD~~~~~-----------~~~~~l~~~~~~~~tii~~sH~~~~~~-~~~d~i~~l 201 (210)
T cd03269 145 H------DPELLILDEPFSGLDPVNVE-----------LLKDVIRELARAGKTVILSTHQMELVE-ELCDRVLLL 201 (210)
T ss_pred c------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEECCCHHHHH-HhhhEEEEE
Confidence 8 99999999998887655543 566667666555789999999887533 234454444
No 73
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.87 E-value=2.1e-23 Score=201.01 Aligned_cols=188 Identities=18% Similarity=0.222 Sum_probs=137.1
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc-cccccccc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG-TKVRGRQY 152 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~-~~~~~~~~ 152 (541)
++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. ... ......++
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~~~~~~~~~~~~ 76 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY---LNGKETPP-LNSKKASKFRRE 76 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEccc-cchhhHHHHHHh
Confidence 468899998888999999999 9999999999999999965 46789999 88873210 111 11112345
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
.++|++|+..+++.+ |+.||+.++............+.+..+++.+|+..
T Consensus 77 ~i~~~~q~~~~~~~~------t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------------ 126 (206)
T TIGR03608 77 KLGYLFQNFALIENE------TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL------------------------ 126 (206)
T ss_pred CeeEEecchhhccCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchh------------------------
Confidence 799999999999888 99999987522111222233345556666665532
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
..++.+..+|+|++|++.|+++++.
T Consensus 127 -------------------------------------------------------~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 127 -------------------------------------------------------KLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred -------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1122345689999999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+++++|+|||..|-+..... .+.+.|.+..+.+.++++.+|+.++.
T Consensus 152 ------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 152 ------DPPLILADEPTGSLDPKNRD-----------EVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred ------CCCEEEEeCCcCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999998876655543 66667766655578899999998754
No 74
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.87 E-value=3.3e-23 Score=200.69 Aligned_cols=199 Identities=20% Similarity=0.219 Sum_probs=143.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+..|+|. ++|..+.. ........+
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~--~~~~~~~~~ 75 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII---IDGLKLTD--DKKNINELR 75 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEECCc--cchhHHHHH
Confidence 46889999999888999999998 9999999999999999965 46789999 88873210 111112334
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++|++|+..+++.+ |+.||+.++.. .......+..+++..+++.+|+.+
T Consensus 76 ~~i~~~~q~~~~~~~~------t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 127 (213)
T cd03262 76 QKVGMVFQQFNLFPHL------TVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD---------------------- 127 (213)
T ss_pred hcceEEecccccCCCC------cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh----------------------
Confidence 5799999999999888 99999987521 111122223334455555555432
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..++.+..+|+|++|++.|++++
T Consensus 128 ---------------------------------------------------------~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 128 ---------------------------------------------------------KADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ---------------------------------------------------------HhhhCccccCHHHHHHHHHHHHH
Confidence 11233456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..... .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 151 ~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tvi~~sh~~~~~~-~~~d~i~~l 208 (213)
T cd03262 151 AM------NPKVMLFDEPTSALDPELVG-----------EVLDVMKDLAEEGMTMVVVTHEMGFAR-EVADRVIFM 208 (213)
T ss_pred hc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 98 99999999998887665543 566677766555788999999877443 344555554
No 75
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.87 E-value=3.5e-23 Score=211.02 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=146.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.+++++++|+++.+|+++||+| ||+|||||||||||++|+| .+++|+|. +.|..+ .... ...
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~---i~g~~~----~~~~-~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ---VCGEDV----LQNP-KEV 73 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEc----ccCh-HHH
Confidence 378999999999999999999999 9999999999999999954 57889999 888732 2111 123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+||++|+..+++.+ |+.||+.+.....+.+..+..+++..+++.+|+.+.
T Consensus 74 ~~~ig~~~q~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------------------- 126 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDM------YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE--------------------- 126 (301)
T ss_pred HhceEEecCCCCCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH---------------------
Confidence 45799999999999999 999999865211222233344556677777776531
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.++.+..+|+|++|++.|++++
T Consensus 127 ----------------------------------------------------------~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 127 ----------------------------------------------------------QHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ----------------------------------------------------------hcCchhhCCHHHHHHHHHHHHH
Confidence 1223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +|+++|+|||..|-+..... .+.+.+.+..+ ++++++.+|+++..+ .++.++.++
T Consensus 149 ~~------~p~lliLDEPt~gLD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~l~~~~-~~~d~i~~l 205 (301)
T TIGR03522 149 IH------DPKVLILDEPTTGLDPNQLV-----------EIRNVIKNIGK-DKTIILSTHIMQEVE-AICDRVIII 205 (301)
T ss_pred hc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEcCCHHHHH-HhCCEEEEE
Confidence 99 99999999998887765543 56666666544 688999999987332 355566555
No 76
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.87 E-value=4e-23 Score=200.12 Aligned_cols=195 Identities=15% Similarity=0.186 Sum_probs=141.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .... ..+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~---~~g~~~----~~~~--~~~ 71 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY---IGGRDV----TDLP--PKD 71 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----CcCC--ccc
Confidence 46889999999889999999999 9999999999999999965 46789999 888732 1111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++.........+..+.+..+++.+|+..
T Consensus 72 ~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 122 (213)
T cd03301 72 RDIAMVFQNYALYPHM------TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH----------------------- 122 (213)
T ss_pred ceEEEEecChhhccCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------------------
Confidence 4699999999888888 99999987521111222333344555666665532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 123 --------------------------------------------------------~~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 123 --------------------------------------------------------LLDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred --------------------------------------------------------HHhCChhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.+.+.+..+ .+.++++.+|+.+... .+..++.++
T Consensus 147 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvi~~sH~~~~~~-~~~d~i~~l 204 (213)
T cd03301 147 R------EPKVFLMDEPLSNLDAKLRV-----------QMRAELKRLQQRLGTTTIYVTHDQVEAM-TMADRIAVM 204 (213)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCeEEEE
Confidence 8 99999999998887655543 56666766654 3788999999876433 344455554
No 77
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.87 E-value=4.1e-23 Score=202.23 Aligned_cols=203 Identities=18% Similarity=0.219 Sum_probs=144.8
Q ss_pred CCCceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccc
Q psy91 76 DRDYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
+++.+.++||++.|++ ..+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+
T Consensus 3 ~~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~~~~-~~ 78 (228)
T PRK10584 3 AENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS---LVGQPLHQ-MD 78 (228)
T ss_pred cCceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE---ECCEEccc-CC
Confidence 3456899999999975 35999999999 9999999999999999955 47789999 88873211 11
Q ss_pred ccc-cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTK-VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~-~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
... ...+.+.++|++|+..+++.+ |+.+|+.++............+++..+++.+|+.+
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------- 138 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTL------NALENVELPALLRGESSRQSRNGAKALLEQLGLGK-------------- 138 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCc------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh--------------
Confidence 000 011234699999999999888 99999987521111122233445566666666532
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
..+..+..+|+|++|
T Consensus 139 -----------------------------------------------------------------~~~~~~~~LS~Ge~q 153 (228)
T PRK10584 139 -----------------------------------------------------------------RLDHLPAQLSGGEQQ 153 (228)
T ss_pred -----------------------------------------------------------------HhhCChhhCCHHHHH
Confidence 112234568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~ 381 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+.+.... ..
T Consensus 154 rl~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~~--~d 214 (228)
T PRK10584 154 RVALARAFNG------RPDVLFADEPTGNLDRQTGD-----------KIADLLFSLNREHGTTLILVTHDLQLAAR--CD 214 (228)
T ss_pred HHHHHHHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHHh--CC
Confidence 9999999998 99999999998887765543 66677776644 37889999999886532 45
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 215 ~i~~l 219 (228)
T PRK10584 215 RRLRL 219 (228)
T ss_pred EEEEE
Confidence 55554
No 78
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.7e-23 Score=208.69 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=147.8
Q ss_pred ceeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.|.+++|++.|+. +.+|++|||+| ||+|||||||||||++|+| .+..|+|+ ++|..+... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~---~~g~~~~~~--~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII---IDGVDITDK--KV 76 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE---ECCEECCCc--Cc
Confidence 3789999999974 46999999999 9999999999999999954 57789999 888732110 01
Q ss_pred ccccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....+..+|||+|++. .+... ||++|+.|+....+....+..+++.++++.+|+.. .
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------------~- 135 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLFEE------TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY--------------E- 135 (287)
T ss_pred cHHHHhhceEEEecCchhccccc------cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc--------------h-
Confidence 11233467999999863 23346 99999988633223344555566777888777741 0
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ +.++.+..+|+|++|++
T Consensus 136 -------------------------------------------------------------~-~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 136 -------------------------------------------------------------D-YKDKSPFELSGGQKRRV 153 (287)
T ss_pred -------------------------------------------------------------h-hccCCcccCCHHHHHHH
Confidence 0 12334567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +|+++|+|||..|.+..... ++.++|.+..+. ++++++.+|+++... .++.++
T Consensus 154 ~iAraL~~------~P~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~drv 215 (287)
T PRK13637 154 AIAGVVAM------EPKILILDEPTAGLDPKGRD-----------EILNKIKELHKEYNMTIILVSHSMEDVA-KLADRI 215 (287)
T ss_pred HHHHHHHc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEE
Confidence 99999999 99999999998887665543 677777776554 789999999987543 355666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 216 ~~l~ 219 (287)
T PRK13637 216 IVMN 219 (287)
T ss_pred EEEE
Confidence 6663
No 79
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=9.3e-23 Score=179.16 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=146.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-----CCCCeeecccCCccceeccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-----LYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-----~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.++||+...++...|.++|++| .|||||||||||||..+.|.. .+|+++ ++++ .++..+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~---l~~~----~l~~lP- 73 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELW---LNEQ----RLDMLP- 73 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEE---ECCe----eccccc-
Confidence 356789998889999999999999 899999999999999994432 367787 7777 444433
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|++|||+.|||++ +|.+|+.|+ ++..+.....+..++.+++.+|+.|..
T Consensus 74 -a~qRq~GiLFQD~lLFphl------sVg~Nl~fA-lp~~~KG~aRr~~a~aAL~~~gL~g~f----------------- 128 (213)
T COG4136 74 -AAQRQIGILFQDALLFPHL------SVGQNLLFA-LPATLKGNARRNAANAALERSGLDGAF----------------- 128 (213)
T ss_pred -hhhhheeeeeccccccccc------ccccceEEe-cCcccccHHHHhhHHHHHHHhccchhh-----------------
Confidence 4456899999999999999 999999998 666666666677788899999988731
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
++.+..+|||++-++++.
T Consensus 129 --------------------------------------------------------------~~dP~tlSGGQrARvaL~ 146 (213)
T COG4136 129 --------------------------------------------------------------HQDPATLSGGQRARVALL 146 (213)
T ss_pred --------------------------------------------------------------hcChhhcCcchHHHHHHH
Confidence 234567899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccch
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMD 373 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~d 373 (541)
++++. .|+++++|||-. .++..+.+||+++...+.+ .+..++.++|+..
T Consensus 147 R~Lla------~Pk~lLLDEPFS-----------~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 147 RALLA------QPKALLLDEPFS-----------RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHh------CcceeeeCCchh-----------HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99888 899999999944 2556677899999777654 5777788887754
No 80
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.87 E-value=3.9e-23 Score=202.21 Aligned_cols=198 Identities=16% Similarity=0.135 Sum_probs=140.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc-------CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-------SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-------~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
|.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+. .
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~~~~-~~~-~ 75 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVL---LDGKDIYD-LDV-D 75 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEE---ECCEEhhh-cch-H
Confidence 46889999999889999999999 9999999999999999954 46789999 88873211 110 0
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhh-HhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHR-KSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~-~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.++|++|+..++ .+ |+.||+.++........ .+..+++..+++.+|+.+.
T Consensus 76 ~~~~~~~i~~~~q~~~~~-~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------- 132 (227)
T cd03260 76 VLELRRRVGMVFQKPNPF-PG------SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE---------------- 132 (227)
T ss_pred HHHHHhhEEEEecCchhc-cc------cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH----------------
Confidence 123345799999998887 78 99999987622111111 1233455566666665431
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCC-CCCCCCCCCcce
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK-VPNVNDRQGKTT 304 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~-~~~ls~g~~q~v 304 (541)
..... +..+|+|++|++
T Consensus 133 --------------------------------------------------------------~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 133 --------------------------------------------------------------VKDRLHALGLSGGQQQRL 150 (227)
T ss_pred --------------------------------------------------------------HhccCCcccCCHHHHHHH
Confidence 00011 356899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.++|.+..+. +++++.+|+.+... .+..++.
T Consensus 151 ~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~-~tii~~sH~~~~~~-~~~d~i~ 211 (227)
T cd03260 151 CLARALAN------EPEVLLLDEPTSALDPISTA-----------KIEELIAELKKE-YTIVIVTHNMQQAA-RVADRTA 211 (227)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhhC-cEEEEEeccHHHHH-HhCCEEE
Confidence 99999998 99999999998876655543 666777766555 78899999877432 3445555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 212 ~l 213 (227)
T cd03260 212 FL 213 (227)
T ss_pred EE
Confidence 54
No 81
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=6.5e-23 Score=204.60 Aligned_cols=204 Identities=15% Similarity=0.206 Sum_probs=143.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|.. +.......+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~---~~g~~----~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR---LNGRP----LADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCEE----cccCCHHHh
Confidence 378999999999888999999999 9999999999999999955 46789999 88872 221112223
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.++............+.+..+++.+|+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 126 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPF------TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH---------------------- 126 (258)
T ss_pred hhheEEEccCCcCCCCC------CHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh----------------------
Confidence 45789999998888888 99999987632221111222334555566665532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 127 ---------------------------------------------------------~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 127 ---------------------------------------------------------LAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred ---------------------------------------------------------HhcCCcccCCHHHHHHHHHHHHH
Confidence 11233557899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+.-.+-..+++++|+|||..|.+..... .+.++|.+.. +.+.++++.+|+.+... .++.++.++
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 214 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQH-----------HVLRLARQLAHERGLAVIVVLHDLNLAA-RYADRIVLL 214 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECCHHHHH-HhcCEEEEE
Confidence 7200000168999999998887665543 5666676665 45788999999877443 355566555
No 82
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.1e-23 Score=207.56 Aligned_cols=198 Identities=19% Similarity=0.150 Sum_probs=148.0
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++||++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|..+ .....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~---~~g~~i----~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT---VGGMVL----SEETV 76 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---ECCEEC----CcCcH
Confidence 46899999999974 56999999999 9999999999999999954 57789999 888732 22222
Q ss_pred ccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...++.+||++|+.. +++.. |+.+|+.++....+....+..+++..++..+|+.+
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------------------ 132 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGA------TVQDDVAFGLENIGVPREEMVERVDQALRQVGMED------------------ 132 (279)
T ss_pred HHHhhheEEEEeCHHHhcccc------cHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 233457999999973 66667 99999987632222233444456677777777643
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 133 -------------------------------------------------------------~~~~~~~~LS~G~~qrv~l 151 (279)
T PRK13635 133 -------------------------------------------------------------FLNREPHRLSGGQKQRVAI 151 (279)
T ss_pred -------------------------------------------------------------hhhCCcccCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++|+|+|||..|.+..... .+.+.|.+..+. +.++++.+|+++... . ..++.+
T Consensus 152 aral~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~l~~l~~~~~~tilivsH~~~~~~-~-~d~i~~ 212 (279)
T PRK13635 152 AGVLAL------QPDIIILDEATSMLDPRGRR-----------EVLETVRQLKEQKGITVLSITHDLDEAA-Q-ADRVIV 212 (279)
T ss_pred HHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHcCCCEEEEEecCHHHHH-c-CCEEEE
Confidence 999999 99999999998887766553 677777776654 789999999988654 2 556655
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 213 l 213 (279)
T PRK13635 213 M 213 (279)
T ss_pred E
Confidence 5
No 83
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=6.5e-23 Score=202.40 Aligned_cols=201 Identities=20% Similarity=0.227 Sum_probs=141.1
Q ss_pred eeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++||++.|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|+ ++|..+.. .........
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~~~-~~~~~~~~~ 76 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL---IDGTDINK-LKGKALRQL 76 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEE---ECCEeccc-cCHhHHHHH
Confidence 468899999987 78999999999 9999999999999999955 46789999 88873211 010001123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccccc--------chhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--------QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--------~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
++.++|++|+..+++.+ |+.+|+.++.... ........+.+..+++.+|+..
T Consensus 77 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------- 136 (241)
T cd03256 77 RRQIGMIFQQFNLIERL------SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-------------- 136 (241)
T ss_pred HhccEEEcccCcccccC------cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh--------------
Confidence 45799999999999889 9999998752110 0001111223333344443321
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
..+..+..+|+|++|
T Consensus 137 -----------------------------------------------------------------~~~~~~~~LS~G~~q 151 (241)
T cd03256 137 -----------------------------------------------------------------KAYQRADQLSGGQQQ 151 (241)
T ss_pred -----------------------------------------------------------------hhCCCcccCCHHHHH
Confidence 123345679999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~ 381 (541)
++.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ .++++++.+|+++... .+..
T Consensus 152 rv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~tH~~~~~~-~~~d 213 (241)
T cd03256 152 RVAIARALMQ------QPKLILADEPVASLDPASSR-----------QVMDLLKRINREEGITVIVSLHQVDLAR-EYAD 213 (241)
T ss_pred HHHHHHHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCC
Confidence 9999999998 99999999998887655543 66677776654 3788999999987543 3556
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 214 ~v~~l~ 219 (241)
T cd03256 214 RIVGLK 219 (241)
T ss_pred EEEEEE
Confidence 666653
No 84
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.7e-23 Score=203.64 Aligned_cols=192 Identities=20% Similarity=0.201 Sum_probs=141.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .. ..
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~-----~~ 69 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT---LDGKPV----EG-----PG 69 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CC-----CC
Confidence 67899999998888999999999 9999999999999999965 46789999 888722 11 12
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
..++|++|+..+++.+ |+.+|+.++....+....+..+++..+++.+|+.+
T Consensus 70 ~~~~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------------------- 120 (255)
T PRK11248 70 AERGVVFQNEGLLPWR------NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG----------------------- 120 (255)
T ss_pred CcEEEEeCCCccCCCC------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 3479999999998888 99999987521112222223344555666665532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..++.+..+|+|++|++.|+++++
T Consensus 121 --------------------------------------------------------~~~~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 121 --------------------------------------------------------AEKRYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred --------------------------------------------------------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..+.. .+.++|.+..+ .+.++++.+|+.+... .++.++.++
T Consensus 145 ~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~g~tviivsH~~~~~~-~~~d~i~~l 202 (255)
T PRK11248 145 A------NPQLLLLDEPFGALDAFTRE-----------QMQTLLLKLWQETGKQVLLITHDIEEAV-FMATELVLL 202 (255)
T ss_pred c------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 8 99999999998887765553 66666766533 4788999999887443 344555555
No 85
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.7e-23 Score=203.06 Aligned_cols=199 Identities=17% Similarity=0.233 Sum_probs=144.7
Q ss_pred eeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.+++++++|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ........
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF---IDGEDI----REQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCeEc----CcCChHHh
Confidence 467899999988 78999999999 9999999999999999955 46789999 888732 21111223
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+..++|++|+..+++.+ |+.||+.++....+.......+.+.++++.+|+...
T Consensus 74 ~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~--------------------- 126 (242)
T cd03295 74 RRKIGYVIQQIGLFPHM------TVEENIALVPKLLKWPKEKIRERADELLALVGLDPA--------------------- 126 (242)
T ss_pred hcceEEEccCccccCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------------------
Confidence 45789999999999888 999999875211122223334456666777666420
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.+.++.+..+|+|++|++.|++++
T Consensus 127 --------------------------------------------------------~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 127 --------------------------------------------------------EFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred --------------------------------------------------------HHHhcChhhCCHHHHHHHHHHHHH
Confidence 011223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..+.. .+.+.|.+..+. ++++++.+|+.+.. ..+..++.++
T Consensus 151 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~L~~~~~~~g~tvii~sH~~~~~-~~~~d~i~~l 209 (242)
T cd03295 151 AA------DPPLLLMDEPFGALDPITRD-----------QLQEEFKRLQQELGKTIVFVTHDIDEA-FRLADRIAIM 209 (242)
T ss_pred hc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEecCHHHH-HHhCCEEEEE
Confidence 98 99999999998887766553 666677766543 78899999987743 2345566555
No 86
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.87 E-value=4.8e-23 Score=199.68 Aligned_cols=200 Identities=19% Similarity=0.276 Sum_probs=142.1
Q ss_pred eeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++|+++.|++ +.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+.. .........
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~i~~-~~~~~~~~~ 76 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR---VNGQDVSD-LRGRAIPYL 76 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEccc-CCHHHHHHH
Confidence 467899999964 68999999999 9999999999999999965 46789999 88873211 111111123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++||+|+..+++.+ |+.+|+.++.........+..+++..+++.+|+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 128 (214)
T cd03292 77 RRKIGVVFQDFRLLPDR------NVYENVAFALEVTGVPPREIRKRVPAALELVGLSH---------------------- 128 (214)
T ss_pred HHheEEEecCchhccCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH----------------------
Confidence 45799999999999989 99999987621111222233344556666665532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 129 ---------------------------------------------------------~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 129 ---------------------------------------------------------KHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred ---------------------------------------------------------HhhCChhhcCHHHHHHHHHHHHH
Confidence 11223446899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|.+..... .+.+++.+..+.+.++++.+|+.+... .+..++.++
T Consensus 152 ~~------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~tiiivtH~~~~~~-~~~d~i~~l 209 (214)
T cd03292 152 VN------SPTILIADEPTGNLDPDTTW-----------EIMNLLKKINKAGTTVVVATHAKELVD-TTRHRVIAL 209 (214)
T ss_pred Hc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 98 99999999998887665543 566667666555788999999876543 244455444
No 87
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.87 E-value=4.7e-23 Score=198.94 Aligned_cols=191 Identities=19% Similarity=0.213 Sum_probs=141.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|+++|++++|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ... ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~--~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT---FDGKSY----QKN--IEAL 71 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCCcc----cch--HHHH
Confidence 46889999998889999999999 9999999999999999955 56789999 888732 111 1234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.+....... ..+++..+++.+|+...
T Consensus 72 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~---------------------- 119 (208)
T cd03268 72 RRIGALIEAPGFYPNL------TARENLRLLARLLGI----RKKRIDEVLDVVGLKDS---------------------- 119 (208)
T ss_pred hhEEEecCCCccCccC------cHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHH----------------------
Confidence 5799999999999889 999999775211111 12344555666555321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.++.+..+|+|++|++.|+++++
T Consensus 120 ---------------------------------------------------------~~~~~~~LS~G~~qrv~la~al~ 142 (208)
T cd03268 120 ---------------------------------------------------------AKKKVKGFSLGMKQRLGIALALL 142 (208)
T ss_pred ---------------------------------------------------------HhhhHhhCCHHHHHHHHHHHHHh
Confidence 11234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 143 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~tH~~~~~~-~~~d~v~~l 199 (208)
T cd03268 143 G------NPDLLILDEPTNGLDPDGIK-----------ELRELILSLRDQGITVLISSHLLSEIQ-KVADRIGII 199 (208)
T ss_pred c------CCCEEEECCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-HhcCEEEEE
Confidence 8 99999999998887665543 666777766656788999999877443 244455554
No 88
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.87 E-value=7.3e-23 Score=205.47 Aligned_cols=202 Identities=13% Similarity=0.166 Sum_probs=143.7
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. ........
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~-~~~~~~~~ 81 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL---FDGENIPA-MSRSRLYT 81 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEccc-cChhhHHH
Confidence 4689999999999889999999999 9999999999999999955 46789999 88873211 11111112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.++|++|+..+++.+ |+.+|+.++.... ..........+..+++.+|+.+
T Consensus 82 ~~~~i~~v~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------------------- 135 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDM------NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-------------------- 135 (269)
T ss_pred HhhcEEEEecccccCCCC------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh--------------------
Confidence 345699999999999888 9999998752111 1112222233444455554432
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..+..+..+|+|++|++.|++
T Consensus 136 -----------------------------------------------------------~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 136 -----------------------------------------------------------AAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred -----------------------------------------------------------hhhCChhhCCHHHHHHHHHHH
Confidence 122345578999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|-+..... .+.++|.+..+. ++++++.+|+++... .+..++.++
T Consensus 157 al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tiiivsH~~~~~~-~~~d~v~~l 217 (269)
T PRK11831 157 AIAL------EPDLIMFDEPFVGQDPITMG-----------VLVKLISELNSALGVTCVVVSHDVPEVL-SIADHAYIV 217 (269)
T ss_pred HHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEecCHHHHH-HhhCEEEEE
Confidence 9998 99999999998887665543 666777766544 789999999876433 344555555
No 89
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.7e-23 Score=208.37 Aligned_cols=203 Identities=18% Similarity=0.177 Sum_probs=146.7
Q ss_pred ceeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.+++|+++|++ +.+|+||||+| ||+|||||||||||++|+| .+.+|+|. ++|+.+.......
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT---IGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---ECCEECccccccc
Confidence 3789999999974 46999999999 9999999999999999954 57789999 8887331110111
Q ss_pred ccccccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 146 KVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.....++.+|||+|++ .++ .. ||.+|+.|+....+....+..+++..+++.+|+...
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-------------- 137 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EE------TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE-------------- 137 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hh------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh--------------
Confidence 1223445799999986 344 46 999999887322223334444567777777777420
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 138 ----------------------------------------------------------------~~~~~~~~LSgGq~qr 153 (290)
T PRK13634 138 ----------------------------------------------------------------LLARSPFELSGGQMRR 153 (290)
T ss_pred ----------------------------------------------------------------hhhCCcccCCHHHHHH
Confidence 1123455689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +|+++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+++... .+..+
T Consensus 154 v~lAraL~~------~P~llllDEPt~~LD~~~~~-----------~l~~~L~~l~~~~g~tviiitHd~~~~~-~~~dr 215 (290)
T PRK13634 154 VAIAGVLAM------EPEVLVLDEPTAGLDPKGRK-----------EMMEMFYKLHKEKGLTTVLVTHSMEDAA-RYADQ 215 (290)
T ss_pred HHHHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCE
Confidence 999999999 99999999998886655543 677777776554 789999999988543 34566
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 216 v~~l~ 220 (290)
T PRK13634 216 IVVMH 220 (290)
T ss_pred EEEEE
Confidence 66653
No 90
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.7e-23 Score=192.41 Aligned_cols=199 Identities=14% Similarity=0.179 Sum_probs=148.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.+++|.++|+.+.++++|||+| +++|||||||||.+.++ +..+++|.|+ ++|. ++...+...+
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~---ld~~----diT~lPm~~R 76 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL---LDDE----DITKLPMHKR 76 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEE---ECCc----ccccCChHHH
Confidence 467889999999999999999999 99999999999999999 6678999999 8888 4444444333
Q ss_pred -cccEEEEeCCCccccccccccCCCcccceeccccccc--hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 151 -QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 151 -~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..+||++|+...|..+ ||.+|+....-... ....+...+++.+|+.+++.++
T Consensus 77 ArlGigYLpQE~SIFr~L------tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl------------------ 132 (243)
T COG1137 77 ARLGIGYLPQEASIFRKL------TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL------------------ 132 (243)
T ss_pred hhcCcccccccchHhhcC------cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH------------------
Confidence 34689999999999999 99999976521111 1223444456677777776653
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+.+...+|||++++++|+
T Consensus 133 -------------------------------------------------------------r~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 133 -------------------------------------------------------------RDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred -------------------------------------------------------------hcCcccccccchHHHHHHH
Confidence 2334456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++++|||..|=+.-.-. .+.+.+......+--+.|..|..+ +.-.++.|.|+|-
T Consensus 152 RaLa~------~P~fiLLDEPFAGVDPiaV~-----------dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~ 213 (243)
T COG1137 152 RALAA------NPKFILLDEPFAGVDPIAVI-----------DIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIIS 213 (243)
T ss_pred HHHhc------CCCEEEecCCccCCCchhHH-----------HHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEe
Confidence 99998 99999999997774432221 233333344445667788888765 4457888999983
No 91
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=8.4e-23 Score=201.94 Aligned_cols=201 Identities=19% Similarity=0.227 Sum_probs=142.2
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++||++.|+ ++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .........
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~~~-~~~~~~~~~ 77 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL---LEGTDITK-LRGKKLRKL 77 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE---ECCEEhhh-CCHHHHHHH
Confidence 67899999998 778999999999 9999999999999999955 46789999 88873211 111111123
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccc--------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
++.++||+|+..+++.+ |+.+|+.++..... .......+++.++++.+|+..
T Consensus 78 ~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------- 137 (243)
T TIGR02315 78 RRRIGMIFQHYNLIERL------TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-------------- 137 (243)
T ss_pred HhheEEEcCCCcccccc------cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh--------------
Confidence 45799999999999888 99999987632110 001122233444455544422
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
..++.+..+|+|++|
T Consensus 138 -----------------------------------------------------------------~~~~~~~~LSgG~~q 152 (243)
T TIGR02315 138 -----------------------------------------------------------------KAYQRADQLSGGQQQ 152 (243)
T ss_pred -----------------------------------------------------------------hhcCCcccCCHHHHH
Confidence 112345578999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~ 381 (541)
++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ .+.++++.+|+.+... +++.
T Consensus 153 rv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~tH~~~~~~-~~~d 214 (243)
T TIGR02315 153 RVAIARALAQ------QPDLILADEPIASLDPKTSK-----------QVMDYLKRINKEDGITVIINLHQVDLAK-KYAD 214 (243)
T ss_pred HHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcC
Confidence 9999999999 99999999998876655443 56666766644 3788999999887542 3555
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 215 ~v~~l~ 220 (243)
T TIGR02315 215 RIVGLK 220 (243)
T ss_pred eEEEEE
Confidence 665553
No 92
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.87 E-value=8e-23 Score=199.24 Aligned_cols=195 Identities=15% Similarity=0.226 Sum_probs=138.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-ccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~ 150 (541)
|.++|++++|+++.+|+++||++ ||+|||||||||||++|+| .+..|+|. ++|..+ ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR---FDGRDI----TGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEc----CCCCHHHHH
Confidence 46889999999888999999999 9999999999999999955 56789999 888622 11111 112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhC-CCCccchhhhhhhccccccCCCCc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVG-ESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vG-L~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
++.++|++|+..+++.+ |+++|+.++..... .......+..+++.++ +..
T Consensus 74 ~~~i~~~~q~~~~~~~~------t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~--------------------- 124 (222)
T cd03224 74 RAGIGYVPEGRRIFPEL------TVEENLLLGAYARR--RAKRKARLERVYELFPRLKE--------------------- 124 (222)
T ss_pred hcCeEEeccccccCCCC------cHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhh---------------------
Confidence 45699999999999989 99999987621111 1111222223333221 110
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+..+..+|+|++|++.|+++
T Consensus 125 ----------------------------------------------------------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 125 ----------------------------------------------------------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred ----------------------------------------------------------hhhCchhhCCHHHHHHHHHHHH
Confidence 1223455789999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 147 l~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 205 (222)
T cd03224 147 LMS------RPKLLLLDEPSEGLAPKIVE-----------EIFEAIRELRDEGVTILLVEQNARFAL-EIADRAYVL 205 (222)
T ss_pred Hhc------CCCEEEECCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhccEEEEe
Confidence 998 99999999998886655543 677777766555788999999877433 344555554
No 93
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.8e-23 Score=208.44 Aligned_cols=203 Identities=18% Similarity=0.160 Sum_probs=145.9
Q ss_pred ceeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcccee-----
Q psy91 79 YIGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVI----- 140 (541)
Q Consensus 79 ~i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~----- 140 (541)
.|.++||++.|++. .+|++|||+| ||+||||||||||+++|+| .+..|+|+ +.|.....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~---~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE---WIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE---Eeceecccccccc
Confidence 37899999999753 5999999999 9999999999999999954 57889999 66652210
Q ss_pred ---------cccc------cccccccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHh
Q psy91 141 ---------EVAG------TKVRGRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVV 204 (541)
Q Consensus 141 ---------~~~~------~~~~~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~v 204 (541)
.+.. ......++.+|||+|++ ..+... ||.+|+.|+....+....+..+++..+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ------TIEKDIIFGPVSMGVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccc------cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc
Confidence 0000 01123456799999985 233345 9999999874333344445556677778877
Q ss_pred CCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcc
Q psy91 205 GESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 205 GL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~ 284 (541)
|+...
T Consensus 153 gL~~~--------------------------------------------------------------------------- 157 (305)
T PRK13651 153 GLDES--------------------------------------------------------------------------- 157 (305)
T ss_pred CCChh---------------------------------------------------------------------------
Confidence 77420
Q ss_pred cccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc
Q psy91 285 SDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT 364 (541)
Q Consensus 285 ~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt 364 (541)
+.++.+..+|+|++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+.+.+
T Consensus 158 ---~~~~~~~~LSgGqkqrvalA~aL~~------~P~lLlLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~t 217 (305)
T PRK13651 158 ---YLQRSPFELSGGQKRRVALAGILAM------EPDFLVFDEPTAGLDPQGVK-----------EILEIFDNLNKQGKT 217 (305)
T ss_pred ---hhhCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHCCCE
Confidence 1233456799999999999999999 99999999998886655443 566667666556889
Q ss_pred eeeccccchhhhhcccceeEEE
Q psy91 365 TTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 365 ~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++.+|+++... .+..++.++
T Consensus 218 iiivtHd~~~~~-~~adrv~vl 238 (305)
T PRK13651 218 IILVTHDLDNVL-EWTKRTIFF 238 (305)
T ss_pred EEEEeeCHHHHH-HhCCEEEEE
Confidence 999999987543 345566665
No 94
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.87 E-value=6.6e-23 Score=209.15 Aligned_cols=189 Identities=16% Similarity=0.226 Sum_probs=140.4
Q ss_pred cccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeC
Q psy91 88 QVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 88 ~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
+|+++.+|+++||+| ||+|||||||||||++|+| .+++|+|. ++|..+ .... ...++.+||++|
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~-~~~~~~i~~~~q 73 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTAR---VAGYDV----VREP-RKVRRSIGIVPQ 73 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEc----ccCH-HHHHhhcEEecC
Confidence 577788999999999 9999999999999999955 57889999 888732 1111 123456999999
Q ss_pred CCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCC
Q psy91 160 STVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIP 239 (541)
Q Consensus 160 ~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~ 239 (541)
+..+++.+ ||.||+.+.....+....+..+++..+++.+|+.+
T Consensus 74 ~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------------------- 116 (302)
T TIGR01188 74 YASVDEDL------TGRENLEMMGRLYGLPKDEAEERAEELLELFELGE------------------------------- 116 (302)
T ss_pred CCCCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------------------------------
Confidence 99999999 99999987521122223334445666777777643
Q ss_pred CCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCee
Q psy91 240 YSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK 319 (541)
Q Consensus 240 ~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~ 319 (541)
..++.+..+|+|++|++.|+++++. +
T Consensus 117 ------------------------------------------------~~~~~~~~LSgG~~qrv~la~al~~------~ 142 (302)
T TIGR01188 117 ------------------------------------------------AADRPVGTYSGGMRRRLDIAASLIH------Q 142 (302)
T ss_pred ------------------------------------------------HhCCchhhCCHHHHHHHHHHHHHhc------C
Confidence 1123345689999999999999999 9
Q ss_pred eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 320 LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 320 ~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++|+|||..|.+..... .+.+++.+..+.+.++++.+|+++... .++.++.++.
T Consensus 143 p~lllLDEPt~gLD~~~~~-----------~l~~~l~~~~~~g~tvi~~sH~~~~~~-~~~d~v~~l~ 198 (302)
T TIGR01188 143 PDVLFLDEPTTGLDPRTRR-----------AIWDYIRALKEEGVTILLTTHYMEEAD-KLCDRIAIID 198 (302)
T ss_pred CCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-HhCCEEEEEE
Confidence 9999999998887665543 666777776656889999999987433 3566666653
No 95
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=8.7e-23 Score=201.51 Aligned_cols=200 Identities=22% Similarity=0.251 Sum_probs=144.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|+ ++|..+.. . .......+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~-~~~~~~~~ 76 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI---VDGLKVND-P-KVDERLIR 76 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEECCc-C-ChhHHHHh
Confidence 67899999999888999999999 9999999999999999955 46789999 88873211 0 01112334
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++|++|+..+++.+ |+.+|+.++... .+.......+.+.++++.+|+..
T Consensus 77 ~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------------------- 128 (240)
T PRK09493 77 QEAGMVFQQFYLFPHL------TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE---------------------- 128 (240)
T ss_pred hceEEEecccccCCCC------cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH----------------------
Confidence 5799999999998888 999999875211 11122223344555565555532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 129 ---------------------------------------------------------~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 129 ---------------------------------------------------------RAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred ---------------------------------------------------------HHhcChhhcCHHHHHHHHHHHHH
Confidence 11233456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|-+..+.. .+.++|.+..+.++++++.+|+.+... .+..++.++.
T Consensus 152 ~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~ 210 (240)
T PRK09493 152 AV------KPKLMLFDEPTSALDPELRH-----------EVLKVMQDLAEEGMTMVIVTHEIGFAE-KVASRLIFID 210 (240)
T ss_pred hc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 98 99999999998887765553 666777766555789999999987543 3455665553
No 96
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.87 E-value=8.5e-23 Score=210.25 Aligned_cols=205 Identities=18% Similarity=0.201 Sum_probs=149.5
Q ss_pred CCCceeeecccccccc-------------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccC
Q psy91 76 DRDYIGFATLPEQVHR-------------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVN 134 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-------------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~ 134 (541)
.++.++++||++.|+. ..+|+||||+| ||+|+||||||||+++|++ .+.+|+|+ ++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~---~~ 81 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA---WL 81 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE---EC
Confidence 3467899999999962 46999999999 9999999999999999954 56789999 88
Q ss_pred CccceecccccccccccccEEEEeCCC--ccccccccccCCCcccceecccccc--chhhHhHhhhHHHHHHHhCCCCcc
Q psy91 135 GSNTVIEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLG 210 (541)
Q Consensus 135 G~~~~~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~--~~~~~e~~~~v~~~L~~vGL~g~~ 210 (541)
|..+.. ......+..++.++||+|+. .++|.+ |+.+|+.++.... ...+.+..+++.++++.+|+..
T Consensus 82 G~~i~~-~~~~~~~~~r~~i~~v~Q~~~~~l~p~~------tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-- 152 (331)
T PRK15079 82 GKDLLG-MKDDEWRAVRSDIQMIFQDPLASLNPRM------TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-- 152 (331)
T ss_pred CEECCc-CCHHHHHHHhCceEEEecCchhhcCCCC------CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh--
Confidence 874321 11111122345799999997 688889 9999998752111 1334445556666777766631
Q ss_pred chhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCC
Q psy91 211 KSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 290 (541)
Q Consensus 211 ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~ 290 (541)
.+.+
T Consensus 153 ----------------------------------------------------------------------------~~~~ 156 (331)
T PRK15079 153 ----------------------------------------------------------------------------NLIN 156 (331)
T ss_pred ----------------------------------------------------------------------------HHhc
Confidence 0112
Q ss_pred CCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeecc
Q psy91 291 RKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEK 369 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~ 369 (541)
+++..+|+|++|++.|+++++. +++++|+|||..|.+..... ++.+.|.+..+. +.++++.+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~------~P~llilDEPts~LD~~~~~-----------~i~~lL~~l~~~~~~til~iT 219 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALIL------EPKLIICDEPVSALDVSIQA-----------QVVNLLQQLQREMGLSLIFIA 219 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEe
Confidence 3456799999999999999999 99999999998886665543 667777776553 78999999
Q ss_pred ccchhhhhcccceeEEE
Q psy91 370 KSMDIEERGVKLRLTVV 386 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvI 386 (541)
|+++... .+..++.++
T Consensus 220 Hdl~~~~-~~~dri~vl 235 (331)
T PRK15079 220 HDLAVVK-HISDRVLVM 235 (331)
T ss_pred CCHHHHH-HhCCEEEEE
Confidence 9987553 355566655
No 97
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=9.1e-23 Score=206.63 Aligned_cols=204 Identities=18% Similarity=0.138 Sum_probs=145.3
Q ss_pred ceeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.|.++||++.|++ +.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+.......
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~---~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT---IAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEECccccccc
Confidence 4789999999974 46999999999 9999999999999999944 57789999 8887331110001
Q ss_pred ccccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|++. .+..+ |+.+|+.++.........+..+++..+++.+|+..
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------------- 136 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFEN------TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE---------------- 136 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccc------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------------
Confidence 11233457999999862 23356 99999987632222233344455666777776631
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.+.++.+..+|+|++|++
T Consensus 137 --------------------------------------------------------------~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 137 --------------------------------------------------------------DLISKSPFELSGGQMRRV 154 (287)
T ss_pred --------------------------------------------------------------hHhhCCcccCCHHHHHHH
Confidence 011234557899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +|+++|+|||..|.+..... .+.++|.+..+.+.++++.+|+++... .++.++.
T Consensus 155 ~laral~~------~p~lLlLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~tvlivsH~~~~~~-~~~d~v~ 216 (287)
T PRK13641 155 AIAGVMAY------EPEILCLDEPAAGLDPEGRK-----------EMMQLFKDYQKAGHTVILVTHNMDDVA-EYADDVL 216 (287)
T ss_pred HHHHHHHc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEE
Confidence 99999999 99999999998887655543 566677666556889999999887543 3566666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 217 ~l~ 219 (287)
T PRK13641 217 VLE 219 (287)
T ss_pred EEE
Confidence 664
No 98
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.86 E-value=1.3e-22 Score=199.76 Aligned_cols=196 Identities=21% Similarity=0.243 Sum_probs=143.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|++++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... ...
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~i----~~~~~-~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS---VAGHDL----RRAPR-AAL 73 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCEEc----ccCCh-hhh
Confidence 67899999999889999999999 9999999999999999965 46789999 888732 11111 122
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+.............+.+.++++.+|+..
T Consensus 74 ~~i~~~~q~~~~~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------------------- 124 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDL------SVRQNLRYHAALHGLSRAEARERIAALLARLGLAE----------------------- 124 (236)
T ss_pred hhEEEeCCCCCCcccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 4799999999888888 99999876521111222223334555555555532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..+..+..+|+|++|++.|+++++
T Consensus 125 --------------------------------------------------------~~~~~~~~LS~G~~qrl~laral~ 148 (236)
T TIGR03864 125 --------------------------------------------------------RADDKVRELNGGHRRRVEIARALL 148 (236)
T ss_pred --------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHHh
Confidence 112334568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||..|-+..+.. .+.++|.+..+ .+.++++.+|+.+... . ..++.++.
T Consensus 149 ~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~-~-~d~i~~l~ 206 (236)
T TIGR03864 149 H------RPALLLLDEPTVGLDPASRA-----------AIVAHVRALCRDQGLSVLWATHLVDEIE-A-DDRLVVLH 206 (236)
T ss_pred c------CCCEEEEcCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEecChhhHh-h-CCEEEEEe
Confidence 8 99999999998887665543 66677776653 4788999999987654 3 66666664
No 99
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.7e-23 Score=204.90 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=143.4
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-cccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGRQ 151 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~~ 151 (541)
.++++++.|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+.. .+.... ..++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~---i~g~~~~~-~~~~~~~~~~~ 101 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL---IDGQDIAA-MSRKELRELRR 101 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEccc-cChhhhhhhhc
Confidence 4668999999999999999999 9999999999999999955 46789999 88873211 111111 1123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++............+.+..+++.+|+.+
T Consensus 102 ~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 152 (269)
T cd03294 102 KKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERAAEALELVGLEG----------------------- 152 (269)
T ss_pred CcEEEEecCcccCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------------------
Confidence 5799999999999889 99999987521111122223344556666666532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 153 --------------------------------------------------------~~~~~~~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 153 --------------------------------------------------------WEHKYPDELSGGMQQRVGLARALA 176 (269)
T ss_pred --------------------------------------------------------HhhCCcccCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||..|-+..... .+.+++.+..+ .++++++.+|+++.. ..+..++.++.
T Consensus 177 ~------~p~illLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tiii~tH~~~~~-~~~~d~v~~l~ 235 (269)
T cd03294 177 V------DPDILLMDEAFSALDPLIRR-----------EMQDELLRLQAELQKTIVFITHDLDEA-LRLGDRIAIMK 235 (269)
T ss_pred c------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhcCEEEEEE
Confidence 8 99999999998887665543 66666766644 378999999987743 34556666653
No 100
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.86 E-value=1.4e-22 Score=201.15 Aligned_cols=203 Identities=18% Similarity=0.175 Sum_probs=144.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccc-c---cc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVA-G---TK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~-~---~~ 146 (541)
.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+..... . ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR---VGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEccccccccchhhH
Confidence 478999999999888999999999 9999999999999999965 46789999 88873211000 0 01
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.++||+|+..+++.+ |+.||+.++... .........+.+..+++.+|+..
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------------- 136 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHR------TVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG----------------- 136 (250)
T ss_pred HHHhhhhEEEEecCcccCCCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------------
Confidence 122345799999999999888 999999875211 11122223334555566555532
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
..+..+..+|+|++|++.
T Consensus 137 --------------------------------------------------------------~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 137 --------------------------------------------------------------KETSYPRRLSGGQQQRVA 154 (250)
T ss_pred --------------------------------------------------------------hhhCChhhCChHHHHHHH
Confidence 112345568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..+.. .+.++|.+..+.+.++++.+|+.+... .++.++.+
T Consensus 155 la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tvi~~tH~~~~~~-~~~d~i~~ 216 (250)
T PRK11264 155 IARALAM------RPEVILFDEPTSALDPELVG-----------EVLNTIRQLAQEKRTMVIVTHEMSFAR-DVADRAIF 216 (250)
T ss_pred HHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEE
Confidence 9999998 99999999998887665543 566666666555788999999877432 34556655
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 217 l~ 218 (250)
T PRK11264 217 MD 218 (250)
T ss_pred EE
Confidence 53
No 101
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.4e-22 Score=205.26 Aligned_cols=202 Identities=17% Similarity=0.156 Sum_probs=144.9
Q ss_pred eeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
|.++|+++.|+.. .+|++|||+| ||+|||||||||||++|+| .+.+|+|+ ++|..+........
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT---VGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE---ECCEECcccccccc
Confidence 6889999999742 5999999999 9999999999999999954 57889999 88873311000111
Q ss_pred cccccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 147 VRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
....++.+|||+|++ .++ .. ||.+|+.|+....+.+..+...++.++++.+|+...
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~-~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--------------- 136 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLF-EE------TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE--------------- 136 (288)
T ss_pred HHHHHhhEEEEecCcchhcc-cc------hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh---------------
Confidence 223456799999986 343 35 899999887322233444555667777777776320
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+.++.+..+|+|++|++
T Consensus 137 ---------------------------------------------------------------~~~~~~~~LSgGqkqrv 153 (288)
T PRK13643 137 ---------------------------------------------------------------FWEKSPFELSGGQMRRV 153 (288)
T ss_pred ---------------------------------------------------------------hccCCcccCCHHHHHHH
Confidence 11233556899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
+|+++++. +++++|+|||..|.+..... .+.+.|.+..+.++++++.+|+++... .+..++.
T Consensus 154 aiA~aL~~------~p~illLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~til~vtHd~~~~~-~~~dri~ 215 (288)
T PRK13643 154 AIAGILAM------EPEVLVLDEPTAGLDPKARI-----------EMMQLFESIHQSGQTVVLVTHLMDDVA-DYADYVY 215 (288)
T ss_pred HHHHHHHh------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHH-HhCCEEE
Confidence 99999998 99999999998887655443 566666665555889999999987443 3455666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 216 ~l~ 218 (288)
T PRK13643 216 LLE 218 (288)
T ss_pred EEE
Confidence 653
No 102
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.86 E-value=1.4e-22 Score=196.34 Aligned_cols=190 Identities=19% Similarity=0.255 Sum_probs=137.1
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccccc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYP 153 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~ 153 (541)
++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ . ..++.
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~-----~~~~~ 69 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR---VFGKPL----E-----KERKR 69 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE---ECCccH----H-----HHHhh
Confidence 678999998888999999999 9999999999999999955 47789999 888732 1 13457
Q ss_pred EEEEeCCCcccc--ccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 154 WGVVEGSTVLTP--SLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 154 ~g~V~Q~~~l~~--~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
++||+|+..+.+ .+ |+.||+.++..... .......+++..+++.+|+..
T Consensus 70 i~~v~q~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 124 (213)
T cd03235 70 IGYVPQRRSIDRDFPI------SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE------------------- 124 (213)
T ss_pred eEEeccccccccCCCC------cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-------------------
Confidence 999999987642 36 99999987522110 011122234455555555432
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 125 ------------------------------------------------------------~~~~~~~~LSgG~~qrv~la 144 (213)
T cd03235 125 ------------------------------------------------------------LADRQIGELSGGQQQRVLLA 144 (213)
T ss_pred ------------------------------------------------------------HHhCCcccCCHHHHHHHHHH
Confidence 11234557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|.+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 145 ~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tvi~~sH~~~~~~-~~~d~i~~l 205 (213)
T cd03235 145 RALVQ------DPDLLLLDEPFAGVDPKTQE-----------DIYELLRELRREGMTILVVTHDLGLVL-EYFDRVLLL 205 (213)
T ss_pred HHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 99998 99999999998887665543 666777766556788999999977443 345555555
No 103
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.86 E-value=1.8e-22 Score=199.47 Aligned_cols=199 Identities=16% Similarity=0.152 Sum_probs=139.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+ .......
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~---~~g~~~----~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL---FKGQDL----LELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEE---ECCEec----CCCCHHH
Confidence 46889999999888999999999 99999999999999999664 6789999 888732 1111111
Q ss_pred -ccccEEEEeCCCccccccccccCCCcccceeccccccc-------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 150 -RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 150 -~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.+..++||+|+..+++.+ |+.+++.+...... ....+..+++..+++.+|+..
T Consensus 74 ~~~~~i~~v~q~~~~~~~~------t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------- 134 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIPGV------SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE------------- 134 (243)
T ss_pred hhccceEeeeccccccCCc------CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-------------
Confidence 233589999999999988 99998876411000 011111223344444444421
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC-CCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP-NVNDRQ 300 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~-~ls~g~ 300 (541)
.+.+..+. .+|+|+
T Consensus 135 -----------------------------------------------------------------~~~~~~~~~~LS~G~ 149 (243)
T TIGR01978 135 -----------------------------------------------------------------EFLNRSVNEGFSGGE 149 (243)
T ss_pred -----------------------------------------------------------------hhcccccccCcCHHH
Confidence 01223343 489999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+....-..
T Consensus 150 ~qrl~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~ 212 (243)
T TIGR01978 150 KKRNEILQMALL------EPKLAILDEIDSGLDIDALK-----------IVAEGINRLREPDRSFLIITHYQRLLNYIKP 212 (243)
T ss_pred HHHHHHHHHHhc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHCCcEEEEEEecHHHHHhhcC
Confidence 999999999998 99999999998876655543 6677777665567899999999875543224
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 213 d~i~~l 218 (243)
T TIGR01978 213 DYVHVL 218 (243)
T ss_pred CeEEEE
Confidence 555555
No 104
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2e-22 Score=200.48 Aligned_cols=206 Identities=13% Similarity=0.068 Sum_probs=145.2
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
.++.|.++||+++|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|+.+.. .
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~i~~-~ 78 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL---LDGENIYD-P 78 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEE---ECCEEccc-c
Confidence 356799999999999888999999999 99999999999999999653 3689999 88873211 0
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.......++.++|++|+..+++ . |+.+|+.++....+. ......+.+..+++.+|+....
T Consensus 79 -~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------- 139 (253)
T PRK14242 79 -HVDVVELRRRVGMVFQKPNPFP-K------SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV----------- 139 (253)
T ss_pred -ccCHHHHhhcEEEEecCCCCCc-C------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-----------
Confidence 0111233457999999987776 6 899999876211111 1222334555666666653200
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
.. ..++.+..+|+|++
T Consensus 140 ----------------------------------------------------------~~------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 140 ----------------------------------------------------------KD------RLHESALGLSGGQQ 155 (253)
T ss_pred ----------------------------------------------------------hH------HhhCCcccCCHHHH
Confidence 00 11234557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+... ++..
T Consensus 156 qrv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tvii~tH~~~~~~-~~~d 216 (253)
T PRK14242 156 QRLCIARALAV------EPEVLLMDEPASALDPIATQ-----------KIEELIHELKA-RYTIIIVTHNMQQAA-RVSD 216 (253)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEEecHHHHH-HhCC
Confidence 99999999998 99999999998887655543 56666666533 678899999877443 3556
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 217 ~v~~l~ 222 (253)
T PRK14242 217 VTAFFY 222 (253)
T ss_pred EEEEEE
Confidence 666653
No 105
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.8e-22 Score=190.80 Aligned_cols=200 Identities=14% Similarity=0.259 Sum_probs=142.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-c
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
+.+++++|+..||...+|++|||++ +|+|||||||||||++|+| ++.+|+|. +.|+ ++...+. +
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~---~~G~----dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII---FDGE----DITGLPPHE 74 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE---ECCe----ecCCCCHHH
Confidence 3578999999999999999999999 9999999999999999955 45579999 9999 4444433 2
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+..++||+|...+||.+ ||.||+.++...... +.......+.+.++
T Consensus 75 r~r~Gi~~VPegR~iF~~L------TVeENL~~g~~~~~~-~~~~~~~~e~v~~l------------------------- 122 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRL------TVEENLLLGAYARRD-KEAQERDLEEVYEL------------------------- 122 (237)
T ss_pred HHhCCeEeCcccccchhhC------cHHHHHhhhhhcccc-cccccccHHHHHHH-------------------------
Confidence 3456899999999999999 999999988332211 01111001111111
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.|.. .+ ..++....+|||++|.++|++
T Consensus 123 -------------------FP~L---------------------------------ke-r~~~~aG~LSGGEQQMLAiaR 149 (237)
T COG0410 123 -------------------FPRL---------------------------------KE-RRNQRAGTLSGGEQQMLAIAR 149 (237)
T ss_pred -------------------ChhH---------------------------------HH-HhcCcccCCChHHHHHHHHHH
Confidence 0000 00 123445679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++++|||+-|-+ .-|-+++.+.+.+..+. +-+++.+-...+.. ..+..+.||..
T Consensus 150 ALm~------~PklLLLDEPs~GLa-----------P~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A-l~iaDr~yvle 211 (237)
T COG0410 150 ALMS------RPKLLLLDEPSEGLA-----------PKIVEEIFEAIKELRKEGGMTILLVEQNARFA-LEIADRGYVLE 211 (237)
T ss_pred HHhc------CCCEEEecCCccCcC-----------HHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH-HHhhCEEEEEe
Confidence 9999 999999999999954 34555777777777755 55666555444432 34777888875
No 106
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=2.8e-22 Score=218.53 Aligned_cols=200 Identities=16% Similarity=0.124 Sum_probs=147.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc-ccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT-KVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~-~~~ 148 (541)
+.|.++|++++|+++.+|+++||+| ||+|||||||||||++|+| .+++|+|. ++|..+ ... ...
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL---YLGKEV----TFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CCCCHHH
Confidence 4689999999999889999999999 9999999999999999955 46789999 888732 111 111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc----chhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
..++.++||+|+..+++.+ ||.||+.++.... .....+..+++.++++.+|+.+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------- 133 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQL------TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF---------------- 133 (501)
T ss_pred HHhCCEEEEEcchhccCCC------cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC----------------
Confidence 1235699999999999999 9999998863211 1112223344555666666543
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..++.+..+|+|++|++
T Consensus 134 ---------------------------------------------------------------~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 134 ---------------------------------------------------------------SSDKLVGELSIGEQQMV 150 (501)
T ss_pred ---------------------------------------------------------------CccCchhhCCHHHHHHH
Confidence 12344567999999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.+++.+..+.+.++++.+|+.+... .++.++.
T Consensus 151 ~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~~tvii~sHd~~~~~-~~~d~i~ 212 (501)
T PRK10762 151 EIAKVLSF------ESKVIIMDEPTDALTDTETE-----------SLFRVIRELKSQGRGIVYISHRLKEIF-EICDDVT 212 (501)
T ss_pred HHHHHHhc------CCCEEEEeCCcCCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEE
Confidence 99999998 99999999998886665543 566666665555788999999877543 3555666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 213 ~l~ 215 (501)
T PRK10762 213 VFR 215 (501)
T ss_pred EEe
Confidence 553
No 107
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.4e-22 Score=199.61 Aligned_cols=202 Identities=14% Similarity=0.125 Sum_probs=145.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++|++++|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|. ++|..+ ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~i----~~~ 75 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVY---LDGQDI----FKM 75 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEE---ECCEEC----CcC
Confidence 578999999999888999999999 999999999999999996642 589999 888732 211
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+++.++|++|+..+++.+ |+.+|+.++...... ...+..+.+..+++.+|+.....
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------ 137 (250)
T PRK14247 76 DVIELRRRVQMVFQIPNPIPNL------SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK------------ 137 (250)
T ss_pred CHHHHhccEEEEeccCccCCCC------cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh------------
Confidence 2223456799999999888888 999999876211111 12333445666777776642000
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. ..+..+..+|+|++|+
T Consensus 138 --------------------------------------------------------------~-~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 138 --------------------------------------------------------------D-RLDAPAGKLSGGQQQR 154 (250)
T ss_pred --------------------------------------------------------------h-hhcCCcccCCHHHHHH
Confidence 0 1123355689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+.. ..+..++
T Consensus 155 v~laral~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~-~~~~d~i 215 (250)
T PRK14247 155 LCIARALAF------QPEVLLADEPTANLDPENTA-----------KIESLFLELKK-DMTIVLVTHFPQQA-ARISDYV 215 (250)
T ss_pred HHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHH-HHhcCEE
Confidence 999999998 99999999998876655543 56666666544 68889999987743 2345566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 216 ~~l~ 219 (250)
T PRK14247 216 AFLY 219 (250)
T ss_pred EEEE
Confidence 6653
No 108
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=1.6e-22 Score=194.79 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=136.9
Q ss_pred eecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 82 FATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 82 ~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
++|+++.|++ +.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .. ..+++
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~---~~~~~ 71 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL---LNGKPI----KA---KERRK 71 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEh----hh---HHhhc
Confidence 5789999987 78999999999 9999999999999999955 57789999 888732 11 12345
Q ss_pred cEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 153 PWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 153 ~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
.++|++|+.. .+... |+.||+.++..... ....++..+++.+|+.+
T Consensus 72 ~i~~~~q~~~~~~~~~------tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~----------------------- 118 (205)
T cd03226 72 SIGYVMQDVDYQLFTD------SVREELLLGLKELD----AGNEQAETVLKDLDLYA----------------------- 118 (205)
T ss_pred ceEEEecChhhhhhhc------cHHHHHhhhhhhcC----ccHHHHHHHHHHcCCch-----------------------
Confidence 7999999964 23456 99999987521111 11134555666666543
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|++.|+++++
T Consensus 119 --------------------------------------------------------~~~~~~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 119 --------------------------------------------------------LKERHPLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred --------------------------------------------------------hcCCCchhCCHHHHHHHHHHHHHH
Confidence 122334568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 143 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~d~i~~l 199 (205)
T cd03226 143 S------GKDLLIFDEPTSGLDYKNME-----------RVGELIRELAAQGKAVIVITHDYEFLA-KVCDRVLLL 199 (205)
T ss_pred h------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 8 99999999998886655443 667777766556889999999877432 344555554
No 109
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-22 Score=201.11 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=144.9
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
...+.++++++.|+++.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ ......
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~ 81 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL---LDAQPL----ESWSSK 81 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE---ECCEeh----hhCCHH
Confidence 34689999999999889999999998 9999999999999999955 46789999 888732 111112
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.+++.++|++|+..+++.+ |+.+|+.++.... . .......+++..+++.+|+.+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------- 139 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGM------TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP---------------- 139 (265)
T ss_pred HHhhheEEeccCCCCCCCc------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----------------
Confidence 3345799999998888888 9999998762111 0 001112233444555554422
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..+..+..+|+|++|++
T Consensus 140 ---------------------------------------------------------------~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 140 ---------------------------------------------------------------LAHRLVDSLSGGERQRA 156 (265)
T ss_pred ---------------------------------------------------------------HhcCCcccCCHHHHHHH
Confidence 12233557899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +++++|+|||..|-+..... .+.+.|.+..+. +.++++.+|+++... ++..++
T Consensus 157 ~laral~~------~p~lllLDEPt~~LD~~~~~-----------~~~~~l~~l~~~~~~tiii~sH~~~~i~-~~~d~i 218 (265)
T PRK10575 157 WIAMLVAQ------DSRCLLLDEPTSALDIAHQV-----------DVLALVHRLSQERGLTVIAVLHDINMAA-RYCDYL 218 (265)
T ss_pred HHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEE
Confidence 99999998 99999999998887665543 666777766544 788999999877443 355566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 219 ~~l~ 222 (265)
T PRK10575 219 VALR 222 (265)
T ss_pred EEEE
Confidence 6653
No 110
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.4e-22 Score=210.47 Aligned_cols=219 Identities=19% Similarity=0.233 Sum_probs=166.7
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
..+.++++|++|+|++..+|++|||++ ||+|.||||||||+|+| ...+++|+|+ ++|+.... ..+.
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~---~~G~~~~~---~sp~ 78 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL---IDGKPVAF---SSPR 78 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEE---ECCEEccC---CCHH
Confidence 345789999999999999999999999 99999999999999999 4578899999 88983211 2233
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.|+|+.+|.|++ ||.||+.+++.+.. +..+...+++..+|..+|+..
T Consensus 79 ~A~~~GI~~V~QEl~L~p~L------sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~--------------- 137 (500)
T COG1129 79 DALAAGIATVHQELSLVPNL------SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI--------------- 137 (500)
T ss_pred HHHhCCcEEEeechhccCCc------cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC---------------
Confidence 45567899999999999999 99999999976643 244555566666676666531
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
-++..+.++|.+++|.
T Consensus 138 ----------------------------------------------------------------~~~~~v~~LsiaqrQ~ 153 (500)
T COG1129 138 ----------------------------------------------------------------DPDTLVGDLSIAQRQM 153 (500)
T ss_pred ----------------------------------------------------------------ChhhhhhhCCHHHHHH
Confidence 1223455678899999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
|+|++++.. +.+++|+|||+.-.+..... ++.+.+.+....+.++++.+|.++ +-..++.++
T Consensus 154 VeIArAl~~------~arllIlDEPTaaLt~~E~~-----------~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~Dri 215 (500)
T COG1129 154 VEIARALSF------DARVLILDEPTAALTVKETE-----------RLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRI 215 (500)
T ss_pred HHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEE
Confidence 999999988 89999999997765544332 677778888889999999999876 445688888
Q ss_pred EEEc---CCCC---CCCCCcHHHHHH
Q psy91 384 TVVD---TPGF---GDSINSEESWRA 403 (541)
Q Consensus 384 nvIp---vi~k---~D~lt~~e~~~~ 403 (541)
+|.- .++- ...++.+++.+.
T Consensus 216 tVlRDG~~v~~~~~~~~~~~~~lv~~ 241 (500)
T COG1129 216 TVLRDGRVVGTRPTAAETSEDELVRL 241 (500)
T ss_pred EEEeCCEEeeecccccCCCHHHHHHH
Confidence 8863 1222 235566555443
No 111
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-22 Score=203.15 Aligned_cols=199 Identities=18% Similarity=0.181 Sum_probs=145.1
Q ss_pred Cceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++|+++.|+ ++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .....
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~i----~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK---IDGITI----SKENL 78 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCEec----CcCCH
Confidence 4689999999995 467999999999 9999999999999999955 46789999 888732 21122
Q ss_pred ccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...++.++|++|+.. .++.+ |+.+|+.++.........+....+.++++.+|+.+
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 134 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGA------TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED------------------ 134 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcc------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH------------------
Confidence 233457999999964 56667 99999987622112222333445666666666632
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 135 -------------------------------------------------------------~~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 135 -------------------------------------------------------------YLDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred -------------------------------------------------------------HhhCCcccCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|.+..... .+.++|.+..+. ++++++.+|+.+... ...++.+
T Consensus 154 aral~~------~p~lllLDEP~~gLD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~--~~d~v~~ 214 (271)
T PRK13632 154 ASVLAL------NPEIIIFDESTSMLDPKGKR-----------EIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIV 214 (271)
T ss_pred HHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEEechhHHh--hCCEEEE
Confidence 999998 99999999998887665543 667777776554 488999999987653 4566666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 215 l~ 216 (271)
T PRK13632 215 FS 216 (271)
T ss_pred EE
Confidence 53
No 112
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.9e-22 Score=203.83 Aligned_cols=201 Identities=18% Similarity=0.160 Sum_probs=147.7
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
..|.++|+++.|+ ++.+|+++||+| ||+||||||||||+++|+| .+.+|+|. ++|..+. .......
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~---i~g~~~~--~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL---FDGKPID--YSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEE---ECCEECC--CCcchHH
Confidence 3689999999996 577999999999 9999999999999999954 57789999 8887321 0111122
Q ss_pred cccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+..+||++|++. .+... |+.+|+.++....+.+..+..+++..+++.+|+.+
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------------------- 133 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSA------SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH------------------- 133 (283)
T ss_pred HHHhhEEEEecCcchhhccc------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-------------------
Confidence 34467999999863 23346 99999987632222333444456677777777643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 134 ------------------------------------------------------------~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 134 ------------------------------------------------------------LKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred ------------------------------------------------------------hhhCCcccCCHHHHHHHHHH
Confidence 11234557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||..|.+..+.. ++.++|.+..+. ++++++.+|+++... .++.++.++
T Consensus 154 raL~~------~p~lLilDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tillvsH~~~~~~-~~~dri~~l 215 (283)
T PRK13636 154 GVLVM------EPKVLVLDEPTAGLDPMGVS-----------EIMKLLVEMQKELGLTIIIATHDIDIVP-LYCDNVFVM 215 (283)
T ss_pred HHHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887665553 677777777654 789999999988643 345566665
No 113
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-22 Score=199.85 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=140.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~---~~g~~~---------~ 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL---AGTAPL---------A 77 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEH---------H
Confidence 35689999999999889999999999 9999999999999999965 46789988 766521 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++|++|+..+++.+ |+.||+.++... ....++..+++.+|+.+
T Consensus 78 ~~~~~i~~v~q~~~l~~~~------tv~enl~~~~~~------~~~~~~~~~l~~~gl~~-------------------- 125 (257)
T PRK11247 78 EAREDTRLMFQDARLLPWK------KVIDNVGLGLKG------QWRDAALQALAAVGLAD-------------------- 125 (257)
T ss_pred HhhCceEEEecCccCCCCC------cHHHHHHhcccc------hHHHHHHHHHHHcCChh--------------------
Confidence 2345699999999999888 999999875211 11234555566665532
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..+..+..+|+|++|++.|++
T Consensus 126 -----------------------------------------------------------~~~~~~~~LSgGqkqrl~lar 146 (257)
T PRK11247 126 -----------------------------------------------------------RANEWPAALSGGQKQRVALAR 146 (257)
T ss_pred -----------------------------------------------------------HhcCChhhCCHHHHHHHHHHH
Confidence 112234568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+.+... .+..++.++
T Consensus 147 aL~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~~tviivsHd~~~~~-~~~d~i~~l 207 (257)
T PRK11247 147 ALIH------RPGLLLLDEPLGALDALTRI-----------EMQDLIESLWQQHGFTVLLVTHDVSEAV-AMADRVLLI 207 (257)
T ss_pred HHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 9998 99999999998887655543 56666666543 4788999999987532 233444443
No 114
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3e-22 Score=197.80 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=141.9
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc-ccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK-VRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~-~~~ 149 (541)
.+.+++++++|+++.+|+++||++ ||+|||||||||||++|+| .+.+|+|. ++|..+ .... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~ 75 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII---IDDEDI----SLLPLHAR 75 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CCCCHHHH
Confidence 478999999999889999999999 9999999999999999965 46789999 888732 1111 112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.++|++|+..+++.+ |+.||+.+..... .....+...++..+++.+|+.+
T Consensus 76 ~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------- 129 (241)
T PRK10895 76 ARRGIGYLPQEASIFRRL------SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-------------------- 129 (241)
T ss_pred HHhCeEEeccCCcccccC------cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH--------------------
Confidence 345799999999998888 9999997752111 1112223334555555555432
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..+..+..+|+|++|++.|++
T Consensus 130 -----------------------------------------------------------~~~~~~~~LS~G~~qrv~lar 150 (241)
T PRK10895 130 -----------------------------------------------------------LRDSMGQSLSGGERRRVEIAR 150 (241)
T ss_pred -----------------------------------------------------------HhhcchhhCCHHHHHHHHHHH
Confidence 112234568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|-+..... .+.+.+.+..+.++++++.+|+.+... .+..++.++
T Consensus 151 al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiii~sH~~~~~~-~~~d~v~~l 210 (241)
T PRK10895 151 ALAA------NPKFILLDEPFAGVDPISVI-----------DIKRIIEHLRDSGLGVLITDHNVRETL-AVCERAYIV 210 (241)
T ss_pred HHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEEcCHHHHH-HhcCEEEEE
Confidence 9998 99999999998886655443 555666665555789999999876333 244455554
No 115
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-22 Score=204.44 Aligned_cols=202 Identities=18% Similarity=0.131 Sum_probs=143.0
Q ss_pred eeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.++||++.|++ +.+|++|||+| ||+|||||||||||++|+| .+..|+|+ ++|..+........
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~---~~g~~i~~~~~~~~ 79 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT---VDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEECccccccch
Confidence 789999999964 36999999999 9999999999999999954 57789999 88873211101111
Q ss_pred cccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.+|||+|++. .+... |+.+|+.|+....+....+..+++..++..+|+..
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------------- 136 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFED------TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------------- 136 (286)
T ss_pred HHHHHhheEEEecChHhccchh------hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----------------
Confidence 2234567999999852 22235 89999988632222233344455666666666531
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
...+..+..+|+|++|++.
T Consensus 137 -------------------------------------------------------------~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 137 -------------------------------------------------------------DVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred -------------------------------------------------------------hhhhCCcccCCHHHHHHHH
Confidence 0122345678999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
|+++++. +++++|+|||..|.+..... .+.+++.+..+ .+.|+++.+|+++... ....++.
T Consensus 156 laraL~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tvl~vtH~~~~~~-~~~dri~ 217 (286)
T PRK13646 156 IVSILAM------NPDIIVLDEPTAGLDPQSKR-----------QVMRLLKSLQTDENKTIILVSHDMNEVA-RYADEVI 217 (286)
T ss_pred HHHHHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEE
Confidence 9999999 99999999998886655543 67777777654 4789999999987533 2445555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 218 ~l 219 (286)
T PRK13646 218 VM 219 (286)
T ss_pred EE
Confidence 55
No 116
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.6e-22 Score=204.76 Aligned_cols=206 Identities=20% Similarity=0.171 Sum_probs=146.2
Q ss_pred CCCceeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~ 142 (541)
..+.|.++|+++.|++ +.+|+||||+| ||+||||||||||+++|+| .+.+|+|+ ++|..+....
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~---i~g~~~~~~~ 94 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ---VGDIYIGDKK 94 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE---ECCEEccccc
Confidence 3457999999999974 35999999999 9999999999999999955 57789999 7776321110
Q ss_pred ------------cccccccccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCC
Q psy91 143 ------------AGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESG 208 (541)
Q Consensus 143 ------------~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g 208 (541)
........++.+|||+|++ .++ .. |+.+|+.|+.........+..+++..+++.+|+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KD------TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccc-cc------hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 0001123456799999986 344 35 89999988732222333344456666677766631
Q ss_pred ccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccC
Q psy91 209 LGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 288 (541)
Q Consensus 209 ~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~ 288 (541)
.+
T Consensus 168 ------------------------------------------------------------------------------~~ 169 (320)
T PRK13631 168 ------------------------------------------------------------------------------SY 169 (320)
T ss_pred ------------------------------------------------------------------------------hH
Confidence 01
Q ss_pred CCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeec
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIE 368 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~ 368 (541)
.++.+..+|+|++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+.++++++.
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~------~p~iLLLDEPtsgLD~~~~~-----------~l~~~L~~l~~~g~Tiiiv 232 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAI------QPEILIFDEPTAGLDPKGEH-----------EMMQLILDAKANNKTVFVI 232 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEE
Confidence 123455789999999999999999 99999999998886655543 6666776665568899999
Q ss_pred cccchhhhhcccceeEEEc
Q psy91 369 KKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 369 ~~~~di~~~~l~~rvnvIp 387 (541)
+|+++... .+..++.++.
T Consensus 233 tHd~~~~~-~~adri~vl~ 250 (320)
T PRK13631 233 THTMEHVL-EVADEVIVMD 250 (320)
T ss_pred ecCHHHHH-HhCCEEEEEE
Confidence 99987432 3445666553
No 117
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.5e-22 Score=199.82 Aligned_cols=205 Identities=18% Similarity=0.152 Sum_probs=145.1
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~ 143 (541)
+..+.++||++.|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|+ ++|+.+.. .
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~---~~g~~i~~-~- 76 (253)
T PRK14267 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR---LFGRNIYS-P- 76 (253)
T ss_pred cceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE---ECCEEccc-c-
Confidence 34689999999999888999999999 999999999999999996642 389999 88873310 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.......++.++|++|+..+++.+ |+.+|+.++...... ........+..+++.+|+...
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 138 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHL------TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE------------ 138 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCC------cHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc------------
Confidence 111112345799999999999888 999999875221111 122333455666666665320
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+. . ..+..+..+|+|++
T Consensus 139 ---------------------------------------------------------~~-----~-~~~~~~~~LS~G~~ 155 (253)
T PRK14267 139 ---------------------------------------------------------VK-----D-RLNDYPSNLSGGQR 155 (253)
T ss_pred ---------------------------------------------------------hh-----h-hhccChhhCCHHHH
Confidence 00 0 01234557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+.. ..+..
T Consensus 156 qrv~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~-~~~~d 216 (253)
T PRK14267 156 QRLVIARALAM------KPKILLMDEPTANIDPVGTA-----------KIEELLFELKK-EYTIVLVTHSPAQA-ARVSD 216 (253)
T ss_pred HHHHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhh-CCEEEEEECCHHHH-HhhCC
Confidence 99999999998 99999999998887655543 56666666543 57899999987743 33555
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 217 ~i~~l 221 (253)
T PRK14267 217 YVAFL 221 (253)
T ss_pred EEEEE
Confidence 66555
No 118
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-22 Score=199.99 Aligned_cols=198 Identities=15% Similarity=0.176 Sum_probs=142.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++|++++|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ........
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF---LGDKPI----SMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEE---ECCEEh----HHCCHHHH
Confidence 378999999999889999999998 9999999999999999955 56789999 888722 11111223
Q ss_pred cccEEEEeCCCccccccccccCCCcccceecccccc----chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.++|++|+..+++.+ |+.+|+.++.... ........+.+..+++.+|+..
T Consensus 75 ~~~i~~~~q~~~~~~~~------tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 130 (255)
T PRK11231 75 ARRLALLPQHHLTPEGI------TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH------------------ 130 (255)
T ss_pred hhheEEecccCCCCCCc------cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH------------------
Confidence 45699999999888888 9999988762110 0011122233444555555431
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.+..+..+|+|++|++.|
T Consensus 131 -------------------------------------------------------------~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 131 -------------------------------------------------------------LADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred -------------------------------------------------------------HHcCCcccCCHHHHHHHHH
Confidence 1223456789999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 150 aral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~l~~~~~tiii~tH~~~~~~-~~~d~i~~l 211 (255)
T PRK11231 150 AMVLAQ------DTPVVLLDEPTTYLDINHQV-----------ELMRLMRELNTQGKTVVTVLHDLNQAS-RYCDHLVVL 211 (255)
T ss_pred HHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEECCHHHHH-HhcCEEEEE
Confidence 999999 99999999998886655443 566667665555788999999877432 355555555
No 119
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-22 Score=202.61 Aligned_cols=197 Identities=18% Similarity=0.167 Sum_probs=144.4
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc-cccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT-KVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~-~~~~ 149 (541)
+.++||++.|+ .+.+|++|||+| ||+|||||||||||++|+| .+.+|+|+ ++|..+ ... ....
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL---VSGIDT----GDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCEEC----CccccHHH
Confidence 67899999995 567999999999 9999999999999999954 56789999 888732 111 1123
Q ss_pred ccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.++|++|++. .+... |+.+|+.++....+.......+.+..+++.+|+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------------------- 128 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGR------TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-------------------- 128 (274)
T ss_pred HHhheEEEEEChhhhcccc------hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH--------------------
Confidence 3457999999875 35556 99999987632222233334445666676666643
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+.+..+..+|+|++|++.|++
T Consensus 129 -----------------------------------------------------------~~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 129 -----------------------------------------------------------YRHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred -----------------------------------------------------------HhcCCcccCCHHHHHHHHHHH
Confidence 112234568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|.+..+.. .+.+.|.+..+.+.++++.+|+++... ...++.++.
T Consensus 150 al~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~til~~tH~~~~~~--~~d~v~~l~ 209 (274)
T PRK13644 150 ILTM------EPECLIFDEVTSMLDPDSGI-----------AVLERIKKLHEKGKTIVYITHNLEELH--DADRIIVMD 209 (274)
T ss_pred HHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCHHHHh--hCCEEEEEE
Confidence 9999 99999999998887765543 666677766556889999999988653 366666663
No 120
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4e-22 Score=217.64 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=146.2
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C--CCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D--LYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~--~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++|++++|+++.+|++|||+| +|+|||||||||||++|+|. + .+|+|. ++|..+ .....
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~---~~g~~~----~~~~~ 76 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEII---FEGEEL----QASNI 76 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE---ECCEEC----CCCCH
Confidence 4689999999999889999999999 99999999999999999654 2 589999 888732 21111
Q ss_pred -ccccccEEEEeCCCccccccccccCCCcccceecccccc--c-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 -RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--Q-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 -~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
..+++.+|||+|+..+++.+ ||.||+.++.... . .......+++.++++.+|+.+
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------- 135 (506)
T PRK13549 77 RDTERAGIAIIHQELALVKEL------SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI--------------- 135 (506)
T ss_pred HHHHHCCeEEEEeccccCCCC------cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC---------------
Confidence 12245699999999999999 9999998863211 1 122223344555666665532
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 136 ----------------------------------------------------------------~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 136 ----------------------------------------------------------------NPATPVGNLGLGQQQL 151 (506)
T ss_pred ----------------------------------------------------------------CcccchhhCCHHHHHH
Confidence 2233456799999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|.+..... .+.++|.+..+.+.++++.+|+++... .++.++
T Consensus 152 v~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~~tvi~~tH~~~~~~-~~~d~v 213 (506)
T PRK13549 152 VEIAKALNK------QARLLILDEPTASLTESETA-----------VLLDIIRDLKAHGIACIYISHKLNEVK-AISDTI 213 (506)
T ss_pred HHHHHHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCcHHHHH-HhcCEE
Confidence 999999998 99999999998776655443 566666666555788999999977543 344555
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 214 ~~l~ 217 (506)
T PRK13549 214 CVIR 217 (506)
T ss_pred EEEE
Confidence 5553
No 121
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-22 Score=203.46 Aligned_cols=198 Identities=17% Similarity=0.148 Sum_probs=146.1
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCC---CCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLY---GDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~---G~i~~~~~~G~~~~~~~~~ 144 (541)
..|.++|+++.|++ +.+|+++||+| ||+|||||||||||++|+|. +.. |+|. ++|..+ ..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~---i~g~~~----~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKIT---VDGITL----TA 76 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEE---ECCEEC----Cc
Confidence 36899999999964 46999999999 99999999999999999664 444 8999 888732 22
Q ss_pred cccccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.+|||+|+.. +++.. ||.+|+.|+.........+..+++..+++.+|+.+
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--------------- 135 (282)
T PRK13640 77 KTVWDIREKVGIVFQNPDNQFVGA------TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD--------------- 135 (282)
T ss_pred CCHHHHHhheEEEEECHHHhhccC------CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh---------------
Confidence 122233457999999974 66678 99999987621122233344455666677666643
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 136 ----------------------------------------------------------------~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 136 ----------------------------------------------------------------YIDSEPANLSGGQKQR 151 (282)
T ss_pred ----------------------------------------------------------------HhcCCcccCCHHHHHH
Confidence 1123345789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +|+++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+++... .+.+
T Consensus 152 v~laral~~------~P~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tvli~tH~~~~~~--~~d~ 212 (282)
T PRK13640 152 VAIAGILAV------EPKIIILDESTSMLDPAGKE-----------QILKLIRKLKKKNNLTVISITHDIDEAN--MADQ 212 (282)
T ss_pred HHHHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH--hCCE
Confidence 999999999 99999999998887665543 666777766553 789999999988653 4666
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 213 i~~l 216 (282)
T PRK13640 213 VLVL 216 (282)
T ss_pred EEEE
Confidence 6665
No 122
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.86 E-value=3.5e-22 Score=199.23 Aligned_cols=206 Identities=16% Similarity=0.155 Sum_probs=149.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceec-------
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIE------- 141 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~------- 141 (541)
++.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV---VNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEEccccccccccc
Confidence 35689999999999889999999999 9999999999999999955 46789999 888733110
Q ss_pred --ccccccccccccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 142 --VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 142 --~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.........++.++||+|+..+++.+ |++||+.++... .........+++.++++.+|+.+.
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~------sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------- 144 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHM------TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDER--------- 144 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCC------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChh---------
Confidence 00001123345799999999999989 999999764211 112223334455666666666431
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
..+..+..+|+
T Consensus 145 ---------------------------------------------------------------------~~~~~~~~LS~ 155 (257)
T PRK10619 145 ---------------------------------------------------------------------AQGKYPVHLSG 155 (257)
T ss_pred ---------------------------------------------------------------------hhhCCcccCCH
Confidence 11223456899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhc
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERG 378 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~ 378 (541)
|++|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+.++++++.+|+.+... .
T Consensus 156 G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tiiivsH~~~~~~-~ 217 (257)
T PRK10619 156 GQQQRVSIARALAM------EPEVLLFDEPTSALDPELVG-----------EVLRIMQQLAEEGKTMVVVTHEMGFAR-H 217 (257)
T ss_pred HHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHHH-H
Confidence 99999999999999 99999999998887766553 666777766656889999999877543 3
Q ss_pred ccceeEEEc
Q psy91 379 VKLRLTVVD 387 (541)
Q Consensus 379 l~~rvnvIp 387 (541)
++.++.++.
T Consensus 218 ~~d~i~~l~ 226 (257)
T PRK10619 218 VSSHVIFLH 226 (257)
T ss_pred hcCEEEEEE
Confidence 556666653
No 123
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5e-22 Score=217.11 Aligned_cols=199 Identities=20% Similarity=0.197 Sum_probs=146.7
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-c
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
+.+.++|++++|+++.+|+++||+| ||+|||||||||||++|+| .+.+|+|+ ++|..+ ..... .
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~i----~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT---INNINY----NKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEE---ECCEEC----CCCCHHH
Confidence 4689999999999889999999999 9999999999999999955 46789999 888732 21111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc----ch---hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE----QV---HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~----~~---~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
..++.++||+|+..+++.+ ||.+|+.++.... +. ...+..+++..+++.+|+.+
T Consensus 77 ~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------------- 137 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDEL------TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV------------- 137 (510)
T ss_pred HHHCCeEEEeecccccCCC------cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-------------
Confidence 1234699999999999999 9999998763211 10 11222334555555555532
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
..++.+..+|+|++
T Consensus 138 ------------------------------------------------------------------~~~~~~~~LSgG~~ 151 (510)
T PRK09700 138 ------------------------------------------------------------------DLDEKVANLSISHK 151 (510)
T ss_pred ------------------------------------------------------------------CcccchhhCCHHHH
Confidence 22345567999999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+.+.++++.+|+++... .++.
T Consensus 152 qrv~ia~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tiiivsHd~~~~~-~~~d 213 (510)
T PRK09700 152 QMLEIAKTLML------DAKVIIMDEPTSSLTNKEVD-----------YLFLIMNQLRKEGTAIVYISHKLAEIR-RICD 213 (510)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCC
Confidence 99999999998 99999999998886665543 666677766555789999999977544 3455
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 214 ~v~~l 218 (510)
T PRK09700 214 RYTVM 218 (510)
T ss_pred EEEEE
Confidence 55555
No 124
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=5.3e-22 Score=196.11 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=141.8
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc-c
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR-G 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~-~ 149 (541)
.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ...... .
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL---FGGTDL----TGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE---ECCeec----CCCCHHHH
Confidence 478999999998888999999999 9999999999999999955 47889999 888722 111111 1
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccc--------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ--------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~--------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.+..++|++|+..+++.+ |+.+|+.++..... ........++..+++.+|+.+
T Consensus 75 ~~~~i~~~~q~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------- 135 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENL------TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD------------- 135 (242)
T ss_pred HhcCeeEeccccccCCCC------CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-------------
Confidence 234699999999999999 99999987521100 011122334445555554432
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
..+..+..+|+|++
T Consensus 136 ------------------------------------------------------------------~~~~~~~~LS~Ge~ 149 (242)
T TIGR03411 136 ------------------------------------------------------------------EADRLAGLLSHGQK 149 (242)
T ss_pred ------------------------------------------------------------------hhcCChhhCCHHHH
Confidence 11234556899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++++|||..|-+..... .+.++|.+..+ ++++++.+|+.+... .+..
T Consensus 150 qrv~laral~~------~p~~lllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sH~~~~~~-~~~d 210 (242)
T TIGR03411 150 QWLEIGMLLMQ------DPKLLLLDEPVAGMTDEETE-----------KTAELLKSLAG-KHSVVVVEHDMEFVR-SIAD 210 (242)
T ss_pred HHHHHHHHHhc------CCCEEEecCCccCCCHHHHH-----------HHHHHHHHHhc-CCEEEEEECCHHHHH-HhCC
Confidence 99999999998 99999999998887665543 56666666554 578999999887543 2445
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 211 ~i~~l 215 (242)
T TIGR03411 211 KVTVL 215 (242)
T ss_pred EEEEE
Confidence 55555
No 125
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4e-22 Score=199.71 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=143.5
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.-.|.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ ......
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~~~ 77 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW---LDGEHI----QHYASK 77 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE---ECCEEh----hhCCHH
Confidence 34689999999999889999999998 9999999999999999955 46789999 888732 221122
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.+++.++|++|+..+++.+ |+.+|+.++..+.. .........+..+++.+|+.+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~------tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------- 135 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDI------TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH---------------- 135 (265)
T ss_pred HHhhheEEeeccCcCCCCC------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----------------
Confidence 2345699999999888888 99999877522110 001112233445555555432
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+.++.+..+|+|++|++
T Consensus 136 ---------------------------------------------------------------~~~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 136 ---------------------------------------------------------------LADQSVDTLSGGQRQRA 152 (265)
T ss_pred ---------------------------------------------------------------HhcCCcccCChHHHHHH
Confidence 12334567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ .+.++++.+|+.+... .+..++
T Consensus 153 ~laral~~------~p~llllDEPt~gLD~~~~~-----------~l~~~L~~l~~~~~~tiii~tH~~~~~~-~~~d~i 214 (265)
T PRK10253 153 WIAMVLAQ------ETAIMLLDEPTTWLDISHQI-----------DLLELLSELNREKGYTLAAVLHDLNQAC-RYASHL 214 (265)
T ss_pred HHHHHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEE
Confidence 99999998 99999999998886655443 56666666654 3778999999987432 345555
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 215 ~~l 217 (265)
T PRK10253 215 IAL 217 (265)
T ss_pred EEE
Confidence 555
No 126
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.85 E-value=3.9e-22 Score=197.76 Aligned_cols=202 Identities=17% Similarity=0.133 Sum_probs=142.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCC-----CCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDL-----YGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~-----~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
++++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+. +|+|. ++|..+.. . ...
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~---~~g~~~~~-~-~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL---FDGQDIYD-K-KID 76 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEE---ECCEEccc-c-ccc
Confidence 67899999999888999999999 9999999999999999955 444 89999 88873211 0 011
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.++|++|+..+++ . |+.+|+.++....+ ....+..+.+..+++.+|+.....
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------------- 135 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-M------SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------------- 135 (247)
T ss_pred hHHHHhheEEEecCcccCC-C------CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh--------------
Confidence 1233457999999988887 8 99999987521111 122333445666777777642000
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+ ..+..+..+|+|++|++.
T Consensus 136 ------------------------------------------------------------~-~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 136 ------------------------------------------------------------D-RLHDSALGLSGGQQQRLC 154 (247)
T ss_pred ------------------------------------------------------------h-HhhCCcccCCHHHHHHHH
Confidence 0 112345578999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ +.++++.+|+.+... .+..++.+
T Consensus 155 laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiiivsH~~~~~~-~~~d~i~~ 215 (247)
T TIGR00972 155 IARALAV------EPEVLLLDEPTSALDPIATG-----------KIEELIQELKK-KYTIVIVTHNMQQAA-RISDRTAF 215 (247)
T ss_pred HHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHh-cCeEEEEecCHHHHH-HhCCEEEE
Confidence 9999998 99999999998876655443 56666666544 378899999887432 34456655
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 216 l~ 217 (247)
T TIGR00972 216 FY 217 (247)
T ss_pred EE
Confidence 53
No 127
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.9e-22 Score=192.29 Aligned_cols=193 Identities=17% Similarity=0.207 Sum_probs=138.4
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|++++|+++. .++||+| +|+|||||||||||++|++ .+.+|+|. ++|..+ .... ..+
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~---~~g~~~----~~~~--~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL---INGVDV----TAAP--PAD 69 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEc----CcCC--HhH
Confidence 46889999998654 3999998 9999999999999999955 46789999 888732 1111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.++............+.+..+++.+|+.+
T Consensus 70 ~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 120 (211)
T cd03298 70 RPVSMLFQENNLFAHL------TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG----------------------- 120 (211)
T ss_pred ccEEEEecccccCCCC------cHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-----------------------
Confidence 5799999999999888 99999987632111111122334556666666532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..+..+..+|+|++|++.|+++++
T Consensus 121 --------------------------------------------------------~~~~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 121 --------------------------------------------------------LEKRLPGELSGGERQRVALARVLV 144 (211)
T ss_pred --------------------------------------------------------HHhCCcccCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+.+... .+..++.++
T Consensus 145 ~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~i~~l 202 (211)
T cd03298 145 R------DKPVLLLDEPFAALDPALRA-----------EMLDLVLDLHAETKMTVLMVTHQPEDAK-RLAQRVVFL 202 (211)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH-hhhCEEEEE
Confidence 8 99999999998887665553 66677776654 3788999999877543 234455544
No 128
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.1e-22 Score=201.21 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=140.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++||+++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+. .........+
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~--~~~~~~~~~~ 76 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL---WQGKPLD--YSKRGLLALR 76 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEE---ECCEEcc--cccCCHHHHH
Confidence 67899999999888999999999 9999999999999999955 57789999 8887321 0111112234
Q ss_pred ccEEEEeCCCcc-ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 152 YPWGVVEGSTVL-TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 152 ~~~g~V~Q~~~l-~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++||+|+..+ +... ++.+|+.++....+....+..+.+..+++.+|+.+
T Consensus 77 ~~i~~v~q~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------- 128 (271)
T PRK13638 77 QQVATVFQDPEQQIFYT------DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH---------------------- 128 (271)
T ss_pred hheEEEeeChhhccccc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh----------------------
Confidence 579999998653 2334 67788876411111222233344555666666532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|++.|++++
T Consensus 129 ---------------------------------------------------------~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 129 ---------------------------------------------------------FRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred ---------------------------------------------------------HhcCCchhCCHHHHHHHHHHHHH
Confidence 11223456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 152 ~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tii~vtH~~~~~~-~~~d~i~~l 209 (271)
T PRK13638 152 VL------QARYLLLDEPTAGLDPAGRT-----------QMIAIIRRIVAQGNHVIISSHDIDLIY-EISDAVYVL 209 (271)
T ss_pred Hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99 99999999998886655543 666777766555788999999887543 345566555
No 129
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.5e-22 Score=187.88 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=155.3
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|+.+||+++..++.+|++|||++ ||+|||||||||||+.|.| .|.+|++. ++|. ..+..+.....
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~---~~g~----~l~~~~~~~lA 74 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT---LNGV----PLNSWPPEELA 74 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEe---eCCc----ChhhCCHHHHH
Confidence 67889999999999999999998 9999999999999999955 46789999 8888 55555555666
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhH--hHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRK--SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~--e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+..++++|+..+-+.+ ||.|.|.||+.|.+...+ +..+.+..+|+.+++.++
T Consensus 75 ~~raVlpQ~s~laFpF------tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~l-------------------- 128 (259)
T COG4559 75 RHRAVLPQNSSLAFPF------TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGL-------------------- 128 (259)
T ss_pred HHhhhcccCcccccce------EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhh--------------------
Confidence 7789999999998889 999999999988755443 455567888888888763
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..+....+|||++|||.+++.
T Consensus 129 -----------------------------------------------------------a~R~y~~LSGGEqQRVqlARv 149 (259)
T COG4559 129 -----------------------------------------------------------AGRDYRTLSGGEQQRVQLARV 149 (259)
T ss_pred -----------------------------------------------------------hccchhhcCchHHHHHHHHHH
Confidence 223345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+..+-.-.-..+.+++|||+.-.++.... ...+...+..+.+-.++...||+.+...
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~HQ~-----------~tl~laR~la~~g~~V~~VLHDLNLAA~ 206 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQH-----------HTLRLARQLAREGGAVLAVLHDLNLAAQ 206 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHHHH-----------HHHHHHHHHHhcCCcEEEEEccchHHHH
Confidence 87765444345899999997766655543 4566677777778788889999987753
No 130
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.1e-22 Score=200.89 Aligned_cols=198 Identities=19% Similarity=0.211 Sum_probs=143.9
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++|++++|+ .+.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ .......
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL---IRGEPI----TKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEC----CcCCHHH
Confidence 478999999995 467999999999 9999999999999999955 57789999 888732 2112223
Q ss_pred ccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+..++||+|+.. .+... |+.+|+.++............+++..+++.+|+..
T Consensus 76 ~~~~i~~v~q~~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------- 129 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSP------TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-------------------- 129 (277)
T ss_pred HHhheEEEecCcccccccc------cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh--------------------
Confidence 4457899999963 23356 99999987532222233333445666666666643
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..++.+..+|+|++|++.|++
T Consensus 130 -----------------------------------------------------------~~~~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 130 -----------------------------------------------------------LRDRVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred -----------------------------------------------------------HhcCCcccCCHHHHHHHHHHH
Confidence 112234568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+++.... +..++.++
T Consensus 151 aL~~------~p~llilDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tvli~tH~~~~~~~-~~drv~~l 211 (277)
T PRK13652 151 VIAM------EPQVLVLDEPTAGLDPQGVK-----------ELIDFLNDLPETYGMTVIFSTHQLDLVPE-MADYIYVM 211 (277)
T ss_pred HHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHHH-hCCEEEEE
Confidence 9999 99999999998887665543 677778777654 7899999999875432 45565555
No 131
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.5e-22 Score=200.88 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=146.2
Q ss_pred CCceeeecccccccc------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecc
Q psy91 77 RDYIGFATLPEQVHR------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~ 142 (541)
.+.+.++|++++|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---i~g~~i~--- 75 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY---VDGLDTS--- 75 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEecc---
Confidence 456899999999963 56999999998 9999999999999999955 47789999 8887321
Q ss_pred cccccccccccEEEEeCCCcc-ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVL-TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l-~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.+||++|++.. +... ++.+|+.|+....+....+..+.+..+++.+|+..
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~------~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------------- 136 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVAT------IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE------------- 136 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccc------cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-------------
Confidence 111112335679999998642 2234 78899987632222333344455666777766643
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+.++.+..+|+|++
T Consensus 137 ------------------------------------------------------------------~~~~~~~~LS~G~~ 150 (280)
T PRK13633 137 ------------------------------------------------------------------YRRHAPHLLSGGQK 150 (280)
T ss_pred ------------------------------------------------------------------HhhCCcccCCHHHH
Confidence 12234567899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~ 380 (541)
|++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+++... . .
T Consensus 151 qrv~laral~~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~~~g~tillvtH~~~~~~-~-~ 211 (280)
T PRK13633 151 QRVAIAGILAM------RPECIIFDEPTAMLDPSGRR-----------EVVNTIKELNKKYGITIILITHYMEEAV-E-A 211 (280)
T ss_pred HHHHHHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecChHHHh-c-C
Confidence 99999999999 99999999998887765553 66777777655 4889999999988654 3 6
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 212 d~v~~l~ 218 (280)
T PRK13633 212 DRIIVMD 218 (280)
T ss_pred CEEEEEE
Confidence 6666663
No 132
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.85 E-value=7.2e-22 Score=215.65 Aligned_cols=198 Identities=20% Similarity=0.218 Sum_probs=148.2
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+.++|++++|+++.+|+++||+| ||+|||||||||||++|+| .+..|+|. ++|..+ .....
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~ 80 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE---IGGNPC----ARLTP 80 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----CCCCH
Confidence 445799999999999889999999999 9999999999999999955 46789999 888732 11111
Q ss_pred -ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 -RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 -~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
..++..+|||+|+..+++.+ ||.||+.++... .....+++..+++.+|+..
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~------------------ 132 (510)
T PRK15439 81 AKAHQLGIYLVPQEPLLFPNL------SVKENILFGLPK----RQASMQKMKQLLAALGCQL------------------ 132 (510)
T ss_pred HHHHhCCEEEEeccCccCCCC------cHHHHhhccccc----chHHHHHHHHHHHHcCCCc------------------
Confidence 11234699999999999999 999999886311 1222344555666665532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 133 -------------------------------------------------------------~~~~~~~~LSgG~~qrv~l 151 (510)
T PRK15439 133 -------------------------------------------------------------DLDSSAGSLEVADRQIVEI 151 (510)
T ss_pred -------------------------------------------------------------cccCChhhCCHHHHHHHHH
Confidence 1233456789999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||..|.+..... .+.++|.+..+.+.++++.+|+.+... .++.++.++
T Consensus 152 a~aL~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiiivtHd~~~~~-~~~d~i~~l 213 (510)
T PRK15439 152 LRGLMR------DSRILILDEPTASLTPAETE-----------RLFSRIRELLAQGVGIVFISHKLPEIR-QLADRISVM 213 (510)
T ss_pred HHHHHc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 999998 99999999998886655543 566667666556789999999987543 355566655
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 214 ~ 214 (510)
T PRK15439 214 R 214 (510)
T ss_pred E
Confidence 3
No 133
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4e-22 Score=205.06 Aligned_cols=203 Identities=19% Similarity=0.156 Sum_probs=147.4
Q ss_pred Cceeeecccccccc----------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccce
Q psy91 78 DYIGFATLPEQVHR----------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTV 139 (541)
Q Consensus 78 ~~i~~~~l~~~~~~----------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~ 139 (541)
+.|+++||++.|+. ..+|+||||+| ||+|+||||||||+++|++ .+.+|+|. ++|..+.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~---~~g~~l~ 80 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY---YQGQDLL 80 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEE---ECCEEcC
Confidence 46899999999962 46999999999 9999999999999999954 56789999 8887432
Q ss_pred ecccccccccccccEEEEeCCC--ccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 140 IEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 140 ~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
. ......+.+++.++||+|+. .+.|.+ ++.+++..+... ....+.+..+++.++++.+|+...
T Consensus 81 ~-~~~~~~~~~r~~i~~v~Q~~~~~l~p~~------~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------- 146 (327)
T PRK11308 81 K-ADPEAQKLLRQKIQIVFQNPYGSLNPRK------KVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------- 146 (327)
T ss_pred c-CCHHHHHHHhCCEEEEEcCchhhcCCcc------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH-------
Confidence 1 11111123345799999997 688888 998887654111 122334455567777777776320
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
..++++..+
T Consensus 147 -----------------------------------------------------------------------~~~~~p~~L 155 (327)
T PRK11308 147 -----------------------------------------------------------------------HYDRYPHMF 155 (327)
T ss_pred -----------------------------------------------------------------------HhcCCCccC
Confidence 112345679
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
|+|++|++.|+++++. +++++|+|||+.+.+..... ++.+.|.+..+ .+.++++.+|++...
T Consensus 156 SgGq~QRv~iArAL~~------~P~lLilDEPts~LD~~~~~-----------~i~~lL~~l~~~~g~til~iTHdl~~~ 218 (327)
T PRK11308 156 SGGQRQRIAIARALML------DPDVVVADEPVSALDVSVQA-----------QVLNLMMDLQQELGLSYVFISHDLSVV 218 (327)
T ss_pred CHHHHHHHHHHHHHHc------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999999999999999 99999999998876655443 67777777655 478999999998755
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
. ++..++.++
T Consensus 219 ~-~~adrv~vm 228 (327)
T PRK11308 219 E-HIADEVMVM 228 (327)
T ss_pred H-HhCCEEEEE
Confidence 3 355566555
No 134
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.85 E-value=5e-22 Score=198.68 Aligned_cols=204 Identities=18% Similarity=0.182 Sum_probs=143.1
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC--C---CCCeeecccCCccceecc-cc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD--L---YGDRKVPNVNGSNTVIEV-AG 144 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~--~---~G~i~~~~~~G~~~~~~~-~~ 144 (541)
.+.+.++||++.|+++.+|+++||++ +|+|||||||||||++|+|.. . +|+|+ ++|..+.... ..
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~---~~g~~~~~~~~~~ 78 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIE---LLGRTVQREGRLA 78 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEE---ECCEecccccccc
Confidence 45789999999999889999999999 999999999999999996643 2 48999 8887321100 00
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceecccccc--------chhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--------QVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--------~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
......++.++|++|+..+++.+ |+.+|+.++.... ..........+..+++.+|+.+
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 144 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRL------SVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-------- 144 (262)
T ss_pred hhHHHHHhheEEEccccccccCC------cHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH--------
Confidence 01122345689999999999888 9999998752110 0001112233444455444422
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
+.++.+..+
T Consensus 145 -----------------------------------------------------------------------~~~~~~~~L 153 (262)
T PRK09984 145 -----------------------------------------------------------------------FAHQRVSTL 153 (262)
T ss_pred -----------------------------------------------------------------------HHhCCcccc
Confidence 123345678
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
|+|++|++.|+++++. +|+++|+|||..|.+..... .+.++|.+..+ .+.++++.+|+.+..
T Consensus 154 S~G~~qrv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tvii~tH~~~~~ 216 (262)
T PRK09984 154 SGGQQQRVAIARALMQ------QAKVILADEPIASLDPESAR-----------IVMDTLRDINQNDGITVVVTLHQVDYA 216 (262)
T ss_pred CHHHHHHHHHHHHHhc------CCCEEEecCccccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999998 99999999998887665543 66677776654 478999999998753
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
. .++.++.++
T Consensus 217 ~-~~~d~i~~l 226 (262)
T PRK09984 217 L-RYCERIVAL 226 (262)
T ss_pred H-HhCCEEEEE
Confidence 2 244555554
No 135
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=4e-22 Score=191.94 Aligned_cols=185 Identities=15% Similarity=0.158 Sum_probs=138.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
++++++++.|+++.+|+++||+| +|+||||||||||+++|++ .+.+|+|. ++|..+. ... ...+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~---~~g~~~~----~~~-~~~~ 73 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVL---WQGEPIR----RQR-DEYH 73 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEcc----cch-HHhh
Confidence 67899999999888999999999 9999999999999999955 57789999 8887321 111 1234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.+...... ....+.+..+++.+|+.+
T Consensus 74 ~~~~~~~~~~~~~~~~------tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~----------------------- 121 (204)
T PRK13538 74 QDLLYLGHQPGIKTEL------TALENLRFYQRLHG---PGDDEALWEALAQVGLAG----------------------- 121 (204)
T ss_pred hheEEeCCccccCcCC------cHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHH-----------------------
Confidence 5789999999999888 99999987521111 012234555666666542
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 122 --------------------------------------------------------~~~~~~~~LS~G~~qrl~la~al~ 145 (204)
T PRK13538 122 --------------------------------------------------------FEDVPVRQLSAGQQRRVALARLWL 145 (204)
T ss_pred --------------------------------------------------------HhhCChhhcCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+....
T Consensus 146 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 146 T------RAPLWILDEPFTAIDKQGVA-----------RLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred c------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 9 99999999998776655443 5666666665557889999998775543
No 136
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.6e-22 Score=197.52 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=141.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-c
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
..+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... .
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL---LRGQHI----EGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEE---ECCEEC----CCCCHHH
Confidence 3589999999999889999999999 9999999999999999955 57789999 888732 21111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchh---------------hHhHhhhHHHHHHHhCCCCccchh
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH---------------RKSVKKGFDFTLMVVGESGLGKST 213 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~---------------~~e~~~~v~~~L~~vGL~g~~ks~ 213 (541)
..+..++|++|+..+++.+ |+.+|+.++....... ..+....+..
T Consensus 77 ~~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 136 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREM------TVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAAT-------------- 136 (255)
T ss_pred HHhcCeEEeccCcccCCCC------cHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHH--------------
Confidence 1234589999999999999 9999998762110000 0000011111
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
++..+...+ ..+..+
T Consensus 137 ----------------------------------------------------------------~l~~~gl~~-~~~~~~ 151 (255)
T PRK11300 137 ----------------------------------------------------------------WLERVGLLE-HANRQA 151 (255)
T ss_pred ----------------------------------------------------------------HHHhCChhh-hhhCCh
Confidence 222222222 234556
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccc
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSM 372 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~ 372 (541)
..+|+|++|++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+. +.++++.+|+.
T Consensus 152 ~~LS~G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVT------QPEILMLDEPAAGLNPKETK-----------ELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred hhCCHHHHHHHHHHHHHhc------CCCEEEEcCCccCCCHHHHH-----------HHHHHHHHHHhhcCCEEEEEeCCH
Confidence 7799999999999999999 99999999998887665543 666777766554 78899999987
Q ss_pred hhhhhcccceeEEEc
Q psy91 373 DIEERGVKLRLTVVD 387 (541)
Q Consensus 373 di~~~~l~~rvnvIp 387 (541)
+... .++.++.++.
T Consensus 215 ~~~~-~~~d~i~~l~ 228 (255)
T PRK11300 215 KLVM-GISDRIYVVN 228 (255)
T ss_pred HHHH-HhCCEEEEEE
Confidence 7543 3555666653
No 137
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.4e-22 Score=200.62 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=145.6
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
..+.++||++.|++ ..+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ ....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~i----~~~~ 75 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK---IDGELL----TAEN 75 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE---ECCEEC----CcCC
Confidence 46899999999974 34999999999 9999999999999999944 57789999 888732 2212
Q ss_pred cccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.+||++|++. +++.. |+.+|+.++.........+..+++..+++.+|+.+.
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~~------tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------- 133 (277)
T PRK13642 76 VWNLRRKIGMVFQNPDNQFVGA------TVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF---------------- 133 (277)
T ss_pred HHHHhcceEEEEECHHHhhccC------CHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhH----------------
Confidence 2234567999999974 56677 999999875221122233334456666666666431
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
.+..+..+|+|++|++.
T Consensus 134 ---------------------------------------------------------------~~~~~~~LS~G~~qrv~ 150 (277)
T PRK13642 134 ---------------------------------------------------------------KTREPARLSGGQKQRVA 150 (277)
T ss_pred ---------------------------------------------------------------hhCCcccCCHHHHHHHH
Confidence 12234568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvn 384 (541)
|+++++. +++++|+|||..|-+..... .+.+.|.+..+. +.++++.+|+++... ...++.
T Consensus 151 lAraL~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tiil~sH~~~~~~--~~d~i~ 211 (277)
T PRK13642 151 VAGIIAL------RPEIIILDESTSMLDPTGRQ-----------EIMRVIHEIKEKYQLTVLSITHDLDEAA--SSDRIL 211 (277)
T ss_pred HHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH--hCCEEE
Confidence 9999999 99999999998876655543 666777766654 889999999988764 356666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 212 ~l~ 214 (277)
T PRK13642 212 VMK 214 (277)
T ss_pred EEE
Confidence 653
No 138
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5e-22 Score=199.45 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=142.9
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++|+++.|++ +.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ .....
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~~----~~~~~ 78 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF---YNNQAI----TDDNF 78 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEC----CcCCH
Confidence 46899999999975 45999999999 9999999999999999955 46789999 888732 22122
Q ss_pred ccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...++.++|++|+.. +++.. ++.+|+.++............+.+..+++.+|+.+
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 134 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGS------IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE------------------ 134 (269)
T ss_pred HHHHhheeEEEeChHHhcccc------cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch------------------
Confidence 233457999999974 66667 88888877622111222223334555566655532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..+..+..+|+|++|++.|
T Consensus 135 -------------------------------------------------------------~~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 135 -------------------------------------------------------------RADYEPNALSGGQKQRVAI 153 (269)
T ss_pred -------------------------------------------------------------hhhCCcccCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..+.. .+.++|.+..+. +.++++.+|+.+... . ..++.+
T Consensus 154 aral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~~tiiivtH~~~~~~-~-~d~i~~ 214 (269)
T PRK13648 154 AGVLAL------NPSVIILDEATSMLDPDARQ-----------NLLDLVRKVKSEHNITIISITHDLSEAM-E-ADHVIV 214 (269)
T ss_pred HHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCchHHh-c-CCEEEE
Confidence 999999 99999999998886655543 666777766543 788999999987654 3 566666
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 215 l 215 (269)
T PRK13648 215 M 215 (269)
T ss_pred E
Confidence 5
No 139
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.85 E-value=4.7e-22 Score=197.72 Aligned_cols=202 Identities=18% Similarity=0.176 Sum_probs=143.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecc---------
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEV--------- 142 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~--------- 142 (541)
|.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+....
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ---VEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEcccccccccccccc
Confidence 46889999999888999999999 9999999999999999955 56789999 8887331100
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.++|++|+..+++.. |+.+|+.++.. ............+.++++.+|+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------------- 138 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHK------TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD------------- 138 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCC------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-------------
Confidence 0000112345799999999999888 99999987521 111122222334455555555432
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
..+..+..+|+|++
T Consensus 139 ------------------------------------------------------------------~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 139 ------------------------------------------------------------------KADHMPAQLSGGQQ 152 (252)
T ss_pred ------------------------------------------------------------------HhhcChhhcCHHHH
Confidence 11223456899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~ 380 (541)
|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+. +.++++.+|+.+... .+.
T Consensus 153 qrv~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tiiivsH~~~~~~-~~~ 214 (252)
T TIGR03005 153 QRVAIARALAM------RPKVMLFDEVTSALDPELVG-----------EVLNVIRRLASEHDLTMLLVTHEMGFAR-EFA 214 (252)
T ss_pred HHHHHHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEeCCHHHHH-Hhc
Confidence 99999999998 99999999998876655443 666777766553 788999999887542 344
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 215 d~i~~l~ 221 (252)
T TIGR03005 215 DRVCFFD 221 (252)
T ss_pred CEEEEEE
Confidence 5665553
No 140
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.3e-22 Score=196.16 Aligned_cols=202 Identities=17% Similarity=0.154 Sum_probs=141.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceec--ccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIE--VAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~--~~~~~~~ 148 (541)
.+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+... .......
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN---IAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEecccccccchhhHH
Confidence 378899999999889999999999 9999999999999999955 46789999 888732100 0001112
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.++|++|+..+++.+ |+.||+.+.... .+....+....+..+++.+|+..
T Consensus 79 ~~~~~i~~~~q~~~~~~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------------------- 133 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHL------TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP------------------- 133 (242)
T ss_pred HHHhheEEEecCccccCCC------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------------------
Confidence 2345799999999999888 999998653111 11112222334445555555432
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.+..+..+|+|++|++.|+
T Consensus 134 ------------------------------------------------------------~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 134 ------------------------------------------------------------YADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred ------------------------------------------------------------hhhCChhhCCHHHHHHHHHH
Confidence 12233456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..+.. .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 154 ral~~------~p~llilDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sh~~~~~~-~~~d~i~~l 214 (242)
T PRK11124 154 RALMM------EPQVLLFDEPTAALDPEITA-----------QIVSIIRELAETGITQVIVTHEVEVAR-KTASRVVYM 214 (242)
T ss_pred HHHhc------CCCEEEEcCCCCcCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 99998 99999999998876655443 566666666555788999999877543 234455544
No 141
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.3e-22 Score=204.82 Aligned_cols=204 Identities=13% Similarity=0.092 Sum_probs=146.8
Q ss_pred ceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcC------CCCCCeeecccCCccceecc
Q psy91 79 YIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 79 ~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~------~~~G~i~~~~~~G~~~~~~~ 142 (541)
.++++||++.|+. ..+|+||||+| ||+||||||||||+++|++. +++|+|. ++|+.+.. .
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~---~~G~~i~~-~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE---FNGQDLQR-I 78 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE---ECCEECCc-C
Confidence 4789999999976 46999999999 99999999999999999553 2579999 88874321 1
Q ss_pred cccc-cccccccEEEEeCCC--ccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 143 AGTK-VRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 143 ~~~~-~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.... .+.+++.++||+|+. .+.|.+ ++.+++..... ..+..+.+..+++.++++.+|+.....
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~------~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~------- 145 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCY------TVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS------- 145 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH-------
Confidence 1111 112335799999997 578888 88776654311 112233445567778888888753100
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
..++++..+|+
T Consensus 146 ---------------------------------------------------------------------~l~~~p~~LSg 156 (326)
T PRK11022 146 ---------------------------------------------------------------------RLDVYPHQLSG 156 (326)
T ss_pred ---------------------------------------------------------------------HHhCCchhCCH
Confidence 11234567999
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~ 377 (541)
|++|++.|+++++. +++++|+|||..|.+..... ++.++|.+..+ .+.++++.+|+++...
T Consensus 157 Gq~QRv~iArAL~~------~P~llilDEPts~LD~~~~~-----------~il~lL~~l~~~~g~til~iTHdl~~~~- 218 (326)
T PRK11022 157 GMSQRVMIAMAIAC------RPKLLIADEPTTALDVTIQA-----------QIIELLLELQQKENMALVLITHDLALVA- 218 (326)
T ss_pred HHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-
Confidence 99999999999998 99999999998876655543 67777777755 4789999999988543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.+..++.++
T Consensus 219 ~~adri~vm 227 (326)
T PRK11022 219 EAAHKIIVM 227 (326)
T ss_pred HhCCEEEEE
Confidence 356666665
No 142
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.85 E-value=5.5e-22 Score=194.12 Aligned_cols=201 Identities=18% Similarity=0.198 Sum_probs=137.7
Q ss_pred eeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++||+++|+++ .+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. .+....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII---FDGKDLLK-LSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEccc-cchhhH
Confidence 6789999999865 7999999999 9999999999999999955 47889999 88873211 110001
Q ss_pred ccccccEEEEeCCC--ccccccccccCCCcccceeccccccchh-hHhHhhh-HHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 RGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKG-FDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~-v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
..+++.++|++|+. .+++.+ |+++|+.++....... ....... +..+++.+|+..
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------- 136 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRM------TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE--------------- 136 (228)
T ss_pred HHhhccEEEEecCchhhcCCcC------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh---------------
Confidence 23455799999997 466778 9999987652111100 1111111 123344433310
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.+.+..+..+|+|++|+
T Consensus 137 ---------------------------------------------------------------~~~~~~~~~LS~G~~qr 153 (228)
T cd03257 137 ---------------------------------------------------------------EVLNRYPHELSGGQRQR 153 (228)
T ss_pred ---------------------------------------------------------------hHhhCCchhcCHHHHHH
Confidence 01223455689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.+.+.+..+. ++++++.+|+.+... .+..+
T Consensus 154 v~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~ 215 (228)
T cd03257 154 VAIARALAL------NPKLLIADEPTSALDVSVQA-----------QILDLLKKLQEELGLTLLFITHDLGVVA-KIADR 215 (228)
T ss_pred HHHHHHHhc------CCCEEEecCCCCCCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHHH-HhcCe
Confidence 999999998 99999999998886655443 666777766554 789999999987443 34455
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 216 i~~l 219 (228)
T cd03257 216 VAVM 219 (228)
T ss_pred EEEE
Confidence 5555
No 143
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.5e-22 Score=195.59 Aligned_cols=200 Identities=15% Similarity=0.105 Sum_probs=142.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-----CCCCCeeecccCCccceeccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-----DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-----~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.|.++|+++.|+++.+|+++||++ +|+||||||||||+++|+|. +..|+|. ++|+.+ .....
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~---~~g~~i----~~~~~ 74 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE---IEGKDV----KNQDV 74 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE---ECCEec----ccCCH
Confidence 367899999999888999999999 99999999999999999664 4789999 888733 21112
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
...++.++|++|+..+++ . |+.+|+.++....+. ......+++..+++.+|+...
T Consensus 75 ~~~~~~i~~~~q~~~l~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------- 131 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFV-K------SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE---------------- 131 (246)
T ss_pred HHHhhhEEEEecCCcccc-c------cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChh----------------
Confidence 233457999999988875 7 999999876211111 112233345566666666320
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+.. ..+..+..+|+|++|++.
T Consensus 132 -----------------------------------------------------~~~------~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 132 -----------------------------------------------------VKD------KLKQNALALSGGQQQRLC 152 (246)
T ss_pred -----------------------------------------------------hhH------HhcCCcccCCHHHHHHHH
Confidence 000 012234568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+ +.++++.+|+.+... .+..++.+
T Consensus 153 laral~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~tH~~~~~~-~~~d~i~~ 213 (246)
T PRK14269 153 IARALAI------KPKLLLLDEPTSALDPISSG-----------VIEELLKELSH-NLSMIMVTHNMQQGK-RVADYTAF 213 (246)
T ss_pred HHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHhC-CCEEEEEecCHHHHH-hhCcEEEE
Confidence 9999999 99999999998887665443 56666666544 788999999877443 34455555
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 214 l 214 (246)
T PRK14269 214 F 214 (246)
T ss_pred E
Confidence 5
No 144
>KOG0061|consensus
Probab=99.85 E-value=7e-22 Score=218.34 Aligned_cols=176 Identities=23% Similarity=0.285 Sum_probs=142.8
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCC-----CCeeecccCCccceecccccccccccccEEEEeC
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLY-----GDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~-----G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
.+.+|+|||+.+ ||+|||||||||||++|+++... |+|+ ++|+ ....+..++.+|||.|
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~il---vNG~-------~~~~~~~~~~s~yV~Q 111 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEIL---LNGR-------PRDSRSFRKISGYVQQ 111 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEE---ECCc-------cCchhhhhheeEEEcc
Confidence 478999999998 99999999999999999776554 4444 4443 1223345677899999
Q ss_pred CCccccccccccCCCcccceecc---ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC
Q psy91 160 STVLTPSLIGSLFQTDRDYIGFA---TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG 236 (541)
Q Consensus 160 ~~~l~~~lig~~~qtv~e~l~~~---~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~ 236 (541)
++.++|++ ||+|++.|. +++...+++++.+++++++..+||..++++.+++..
T Consensus 112 dD~l~~~L------TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~------------------ 167 (613)
T KOG0061|consen 112 DDVLLPTL------TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPG------------------ 167 (613)
T ss_pred cccccccc------cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCC------------------
Confidence 99999999 999999987 667777888999999999999999988777554211
Q ss_pred CCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec
Q psy91 237 SIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER 316 (541)
Q Consensus 237 ~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~ 316 (541)
...+|+|+++|++|+..++.
T Consensus 168 --------------------------------------------------------~rgiSGGErkRvsia~Ell~---- 187 (613)
T KOG0061|consen 168 --------------------------------------------------------IRGLSGGERKRVSIALELLT---- 187 (613)
T ss_pred --------------------------------------------------------CCccccchhhHHHHHHHHHc----
Confidence 12478999999999999988
Q ss_pred CeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 317 GVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 317 gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
+|.++++|||+.|.+..... +..+.|++..+.||++++..|...
T Consensus 188 --~P~iLflDEPTSGLDS~sA~-----------~vv~~Lk~lA~~grtVi~tIHQPs 231 (613)
T KOG0061|consen 188 --DPSILFLDEPTSGLDSFSAL-----------QVVQLLKRLARSGRTVICTIHQPS 231 (613)
T ss_pred --CCCEEEecCCCCCcchhhHH-----------HHHHHHHHHHhCCCEEEEEEeCCc
Confidence 99999999998886544443 788899999888999998887643
No 145
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.85 E-value=7.5e-22 Score=192.93 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=142.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|.++||++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ......
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~ 77 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL---FEGEDI----STLKPE 77 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE---ECCEEc----CcCCHH
Confidence 45689999999999889999999999 9999999999999999955 57889999 888622 111112
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++.++|++|+..+++ . |+.+|+.+....... ....+.+..+++.+|+..
T Consensus 78 ~~~~~i~~~~q~~~l~~-~------tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~-------------------- 128 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFG-D------TVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPD-------------------- 128 (225)
T ss_pred HHHhccEEEeccccccc-c------cHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCCh--------------------
Confidence 23457899999987764 6 899998764111110 111223444555555421
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
...+..+..+|+|++|++.|++
T Consensus 129 ----------------------------------------------------------~~~~~~~~~LS~G~~qrv~lar 150 (225)
T PRK10247 129 ----------------------------------------------------------TILTKNIAELSGGEKQRISLIR 150 (225)
T ss_pred ----------------------------------------------------------HHhcCCcccCCHHHHHHHHHHH
Confidence 0112345678999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..... .+.++|.+..+ .+.++++.+|+.+... .+.++.+++
T Consensus 151 al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvii~sh~~~~~~--~~d~i~~l~ 211 (225)
T PRK10247 151 NLQF------MPKVLLLDEITSALDESNKH-----------NVNEIIHRYVREQNIAVLWVTHDKDEIN--HADKVITLQ 211 (225)
T ss_pred HHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECChHHHH--hCCEEEEEe
Confidence 9999 99999999998886655443 56666776654 3778999999988653 366777763
No 146
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.85 E-value=8.4e-22 Score=196.40 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=141.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|+++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .......++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD---LAGVDL----HGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE---ECCEEc----ccCCHHHHh
Confidence 67899999999889999999999 9999999999999999955 46789999 888722 221222234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+.++|++|+..+++.+ |+.+|+.++.... . ....+..+++..+++.+|+.+
T Consensus 75 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------- 129 (256)
T TIGR03873 75 RRVALVEQDSDTAVPL------TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH------------------- 129 (256)
T ss_pred hheEEecccCccCCCC------CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-------------------
Confidence 4689999998777778 9999998752111 0 011112233444555554422
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..+..+..+|+|++|++.|+
T Consensus 130 ------------------------------------------------------------~~~~~~~~LS~G~~qrl~la 149 (256)
T TIGR03873 130 ------------------------------------------------------------LADRDMSTLSGGERQRVHVA 149 (256)
T ss_pred ------------------------------------------------------------hhcCCcccCCHHHHHHHHHH
Confidence 12334557899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|.+..... .+.+.|.+..+.+.++++.+|+++... .+..++.++
T Consensus 150 ~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 210 (256)
T TIGR03873 150 RALAQ------EPKLLLLDEPTNHLDVRAQL-----------ETLALVRELAATGVTVVAALHDLNLAA-SYCDHVVVL 210 (256)
T ss_pred HHHhc------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887665543 566666665555788999999877543 345565555
No 147
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.1e-22 Score=196.74 Aligned_cols=204 Identities=16% Similarity=0.126 Sum_probs=144.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
..+.++|++++|+++.+|+++||+| ||+|||||||||||++|+|.. .+|+|. ++|..+.. ..
T Consensus 3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~---~~g~~~~~--~~ 77 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVL---LDGEDLYG--PG 77 (258)
T ss_pred ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEE---ECCEeccc--cc
Confidence 3689999999999889999999999 999999999999999996642 589999 88873211 00
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++.+ |+.+|+.++...... ......+.+..+++.+|+....
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------- 138 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTM------SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV------------- 138 (258)
T ss_pred cChHHHhcceEEEccccccCCCC------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------------
Confidence 11123345799999999999888 999999875211111 2223334556666666653200
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.. ..+..+..+|+|++|+
T Consensus 139 -------------------------------------------------------------~~-~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 139 -------------------------------------------------------------KD-RLDKPGGGLSGGQQQR 156 (258)
T ss_pred -------------------------------------------------------------hh-HhhCCcccCCHHHHHH
Confidence 00 1123456789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+.+... .+..++
T Consensus 157 v~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tviivsH~~~~~~-~~~d~i 217 (258)
T PRK14241 157 LCIARAIAV------EPDVLLMDEPCSALDPISTL-----------AIEDLINELKQ-DYTIVIVTHNMQQAA-RVSDQT 217 (258)
T ss_pred HHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEecCHHHHH-HhCCEE
Confidence 999999998 99999999998886655543 55666665533 578899999876432 345566
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 218 ~~l 220 (258)
T PRK14241 218 AFF 220 (258)
T ss_pred EEE
Confidence 665
No 148
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.9e-22 Score=197.25 Aligned_cols=205 Identities=15% Similarity=0.127 Sum_probs=145.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|+++.|+++.+|+++||+| ||+|||||||||||++|+|. +.+|+|. ++|..+.. .
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~---~~g~~i~~--~ 84 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS---IEGEDIYE--P 84 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE---ECCEEccc--c
Confidence 34689999999999888999999999 99999999999999999664 2689999 88873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.......++.++|++|+..+++ + |+.+|+.++....+.......+.+..+++.+|+.+...
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------ 145 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFP-M------SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS------------ 145 (258)
T ss_pred cchHHHHhhhEEEEecCCccCc-c------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh------------
Confidence 1111123457999999988887 8 99999987621111222223344566666666532000
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. ..+..+..+|+|++|+
T Consensus 146 --------------------------------------------------------------~-~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 146 --------------------------------------------------------------D-RLKSPALSLSGGQQQR 162 (258)
T ss_pred --------------------------------------------------------------h-hhcCChhhCCHHHHHH
Confidence 0 1123345689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+.+... .++.++
T Consensus 163 v~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~l~~-~~tiiivsH~~~~~~-~~~d~i 223 (258)
T PRK14268 163 LCIARTLAV------KPKIILFDEPTSALDPISTA-----------RIEDLIMNLKK-DYTIVIVTHNMQQAA-RISDYT 223 (258)
T ss_pred HHHHHHHHc------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHhh-CCEEEEEECCHHHHH-HhCCEE
Confidence 999999998 99999999998887665553 55666666543 688899999877543 356666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 224 ~~l~ 227 (258)
T PRK14268 224 GFFL 227 (258)
T ss_pred EEEE
Confidence 6664
No 149
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.8e-22 Score=195.81 Aligned_cols=197 Identities=13% Similarity=0.194 Sum_probs=140.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-cc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~ 149 (541)
.+.++|++++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~----~~~~~~~~ 77 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV---FDGKDI----TDWQTAKI 77 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEE---ECCEec----CCCCHHHH
Confidence 589999999999888999999999 9999999999999999955 56789999 888732 11111 12
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHh-CCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVV-GESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~v-GL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.++|++|+..+++.+ |+.+|+.++.... ......+.+..+++.+ ++.
T Consensus 78 ~~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~--------------------- 128 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRM------TVEENLAMGGFFA--ERDQFQERIKWVYELFPRLH--------------------- 128 (237)
T ss_pred HHhCEEEeccCcccCCCC------cHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHH---------------------
Confidence 345799999999998888 9999998763111 1111112222222222 110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+ ..+..+..+|+|++|++.|++
T Consensus 129 ---------------------------------------------------------~-~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 129 ---------------------------------------------------------E-RRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred ---------------------------------------------------------H-HHhCchhhCCHHHHHHHHHHH
Confidence 0 112245568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+..++.++.
T Consensus 151 al~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l~ 211 (237)
T PRK11614 151 ALMS------QPRLLLLDEPSLGLAPIIIQ-----------QIFDTIEQLREQGMTIFLVEQNANQAL-KLADRGYVLE 211 (237)
T ss_pred HHHh------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCcHHHHH-hhCCEEEEEe
Confidence 9998 99999999998887655443 666777766556889999999876332 3556666653
No 150
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8e-22 Score=194.76 Aligned_cols=195 Identities=18% Similarity=0.232 Sum_probs=140.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ........
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i----~~~~~~~~ 75 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL---IDGVDI----KTIDVIDL 75 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEh----hhcChHHh
Confidence 378999999998888999999999 9999999999999999955 47789999 888732 21112233
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++ . |+.+|+.++..... ....++..+++.+|+..
T Consensus 76 ~~~i~~~~q~~~~~~-~------tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~---------------------- 122 (241)
T PRK14250 76 RRKIGMVFQQPHLFE-G------TVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNK---------------------- 122 (241)
T ss_pred hhcEEEEecCchhch-h------hHHHHHhcchhhcC----cHHHHHHHHHHHcCCCH----------------------
Confidence 457999999987775 6 89999887522111 11223444555555421
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.+.++.+..+|+|++|++.|++++
T Consensus 123 --------------------------------------------------------~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 123 --------------------------------------------------------EYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred --------------------------------------------------------HHhhCCcccCCHHHHHHHHHHHHH
Confidence 011234556899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|.+..+.. .+.++|.+..+ .++++++.+|+.+... .+..++.++.
T Consensus 147 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tii~~sH~~~~~~-~~~d~i~~l~ 206 (241)
T PRK14250 147 AN------NPEVLLLDEPTSALDPTSTE-----------IIEELIVKLKNKMNLTVIWITHNMEQAK-RIGDYTAFLN 206 (241)
T ss_pred hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeccHHHHH-HhCCEEEEEe
Confidence 98 99999999998887655443 56666666554 3789999999887432 3455665553
No 151
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=9.8e-22 Score=189.19 Aligned_cols=172 Identities=20% Similarity=0.235 Sum_probs=129.6
Q ss_pred EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCccccee
Q psy91 103 MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIG 180 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~ 180 (541)
||-|+||||||||+|+| +.+|+.|.|. ++|+++.....+......++++||||||..||||+ ||+.|+.
T Consensus 28 AlFG~SGsGKTslin~IaGL~rPdeG~I~---lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~------tVrgNL~ 98 (352)
T COG4148 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIE---LNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY------TVRGNLR 98 (352)
T ss_pred EEecCCCCChhhHHHHHhccCCccccEEE---ECCEEeecccCCcccChhhheeeeEeeccccccce------EEecchh
Confidence 99999999999999999 5578899999 99996655444444455677899999999999999 9999999
Q ss_pred ccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhc
Q psy91 181 FATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKG 260 (541)
Q Consensus 181 ~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g 260 (541)
|++... ....++.+.+++|+.+
T Consensus 99 YG~~~~------~~~~fd~iv~lLGI~h---------------------------------------------------- 120 (352)
T COG4148 99 YGMWKS------MRAQFDQLVALLGIEH---------------------------------------------------- 120 (352)
T ss_pred hhhccc------chHhHHHHHHHhCcHH----------------------------------------------------
Confidence 994322 2334666677777765
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhh
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEES 339 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~ 339 (541)
+.++.|..+|||++|+|+|.+++.. .|.|++.||| ...|.....
T Consensus 121 ---------------------------LL~R~P~~LSGGEkQRVAIGRALLt------~P~LLLmDEPLaSLD~~RK~-- 165 (352)
T COG4148 121 ---------------------------LLDRYPGTLSGGEKQRVAIGRALLT------APELLLMDEPLASLDLPRKR-- 165 (352)
T ss_pred ---------------------------HHhhCCCccCcchhhHHHHHHHHhc------CCCeeeecCchhhcccchhh--
Confidence 2345677899999999999999998 9999999999 666654443
Q ss_pred hhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 340 WRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 340 ~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+|..| |+...+ .+..+..++|+++ +..|+..+|-+++
T Consensus 166 --Eilpy--------lERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le 203 (352)
T COG4148 166 --EILPY--------LERLRDEINIPILYVSHSLD-EVLRLADRVVVLE 203 (352)
T ss_pred --HHHHH--------HHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec
Confidence 24444 443332 2445677888876 3356777777664
No 152
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.7e-22 Score=199.13 Aligned_cols=199 Identities=20% Similarity=0.222 Sum_probs=143.0
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++|+++.|+ .+.+|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+. .........
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~~~--~~~~~~~~~ 76 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL---IKGEPIK--YDKKSLLEV 76 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE---ECCEECc--cccchHHHH
Confidence 67899999996 467999999999 9999999999999999955 56789999 8887321 011111223
Q ss_pred cccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 151 QYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 151 ~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
++.++|++|+.. .+... |+.+|+.++....+....+..+++..+++.+|+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--------------------- 129 (275)
T PRK13639 77 RKTVGIVFQNPDDQLFAP------TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG--------------------- 129 (275)
T ss_pred HhheEEEeeChhhhhccc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch---------------------
Confidence 457999999963 33446 99999987632212223333445666666666643
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++.+..+|+|++|++.|+++
T Consensus 130 ----------------------------------------------------------~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 130 ----------------------------------------------------------FENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred ----------------------------------------------------------hhcCChhhCCHHHHHHHHHHHH
Confidence 1223455689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..+.. ++.++|.+..+.+.++++.+|+++... .++.++.++
T Consensus 152 l~~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~~~~til~vtH~~~~~~-~~~d~i~~l 210 (275)
T PRK13639 152 LAM------KPEIIVLDEPTSGLDPMGAS-----------QIMKLLYDLNKEGITIIISTHDVDLVP-VYADKVYVM 210 (275)
T ss_pred Hhc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 998 99999999998886655443 677777776656889999999987544 244555554
No 153
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.3e-22 Score=197.25 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=146.0
Q ss_pred CCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceec
Q psy91 75 TDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~ 141 (541)
...+.|.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|+ ++|+.+..
T Consensus 15 ~~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~---~~g~~i~~- 90 (267)
T PRK14235 15 ATEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKIT---LDGEDIYD- 90 (267)
T ss_pred CCCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE---ECCEECcc-
Confidence 3456899999999999888999999999 99999999999999999653 2689999 88873211
Q ss_pred ccccccccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 142 VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
. ......+++.++|++|+..+++ . |+.+|+.++...... ......+.+..+++.+|+.....
T Consensus 91 ~-~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------- 154 (267)
T PRK14235 91 P-RLDVVELRARVGMVFQKPNPFP-K------SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------- 154 (267)
T ss_pred c-ccchHHHhhceEEEecCCCCCC-C------cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh--------
Confidence 0 0111234457999999987765 5 899999876211111 12223345566677666632000
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
. ..+..+..+|+|
T Consensus 155 ------------------------------------------------------------------~-~~~~~~~~LSgG 167 (267)
T PRK14235 155 ------------------------------------------------------------------D-RLHEPGTGLSGG 167 (267)
T ss_pred ------------------------------------------------------------------H-HhhCCcccCCHH
Confidence 0 012235568999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcc
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l 379 (541)
++|++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ +.++++.+|+++... .+
T Consensus 168 q~qrv~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~l~~-~~tiiivtH~~~~~~-~~ 228 (267)
T PRK14235 168 QQQRLCIARAIAV------SPEVILMDEPCSALDPIATA-----------KVEELIDELRQ-NYTIVIVTHSMQQAA-RV 228 (267)
T ss_pred HHHHHHHHHHHHc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHhc-CCeEEEEEcCHHHHH-hh
Confidence 9999999999999 99999999998887665543 56666666544 578899999877543 35
Q ss_pred cceeEEEc
Q psy91 380 KLRLTVVD 387 (541)
Q Consensus 380 ~~rvnvIp 387 (541)
..++.++.
T Consensus 229 ~d~v~~l~ 236 (267)
T PRK14235 229 SQRTAFFH 236 (267)
T ss_pred CCEEEEEE
Confidence 55666654
No 154
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1e-21 Score=196.24 Aligned_cols=205 Identities=15% Similarity=0.123 Sum_probs=144.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|..+.. .
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~---~~g~~~~~--~ 85 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL---LDGENILT--P 85 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE---ECCEEccc--c
Confidence 35689999999999888999999999 99999999999999999664 3579999 88873210 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++.... ........+++.++++.+|+....
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------ 146 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-M------SIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV------------ 146 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-C------cHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh------------
Confidence 1111233457999999988776 7 9999998762111 122233334566667766653200
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
.. ..+..+..+|+|++|
T Consensus 147 ---------------------------------------------------------~~------~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 147 ---------------------------------------------------------KD------KLHQSGYSLSGGQQQ 163 (260)
T ss_pred ---------------------------------------------------------HH------HHhcCCCCCCHHHHH
Confidence 00 112235568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+ +.++++.+|+.+... .+..+
T Consensus 164 rv~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~-~~tiii~sH~~~~~~-~~~d~ 224 (260)
T PRK10744 164 RLCIARGIAI------RPEVLLLDEPCSALDPISTG-----------RIEELITELKQ-DYTVVIVTHNMQQAA-RCSDY 224 (260)
T ss_pred HHHHHHHHHC------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-HhCCE
Confidence 9999999998 99999999998886655443 55666665533 578889999876432 35556
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 225 i~~l~ 229 (260)
T PRK10744 225 TAFMY 229 (260)
T ss_pred EEEEE
Confidence 66664
No 155
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.5e-22 Score=204.84 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=138.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.+ ||+++|+++.+ ++||+| +|+|||||||||||++|+| .+++|+|. ++|+.+............+
T Consensus 2 l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~---~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIV---LNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccccccccccchhh
Confidence 455 88999987543 899998 9999999999999999955 46789999 8887331100001112234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++||+|+..+++++ ||.+|+.++.. ....+++.++++.+|+..
T Consensus 76 ~~i~~v~q~~~l~~~~------tv~enl~~~~~------~~~~~~~~~~l~~~gl~~----------------------- 120 (352)
T PRK11144 76 RRIGYVFQDARLFPHY------KVRGNLRYGMA------KSMVAQFDKIVALLGIEP----------------------- 120 (352)
T ss_pred CCEEEEcCCcccCCCC------cHHHHHHhhhh------hhhHHHHHHHHHHcCCch-----------------------
Confidence 6799999999999999 99999988621 112234555666665532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|++.|+++++
T Consensus 121 --------------------------------------------------------~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 121 --------------------------------------------------------LLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred --------------------------------------------------------hhhCCcccCCHHHHHHHHHHHHHH
Confidence 123345678999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||..|-+..... .+.++|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 145 ~------~p~llLLDEPts~LD~~~~~-----------~l~~~L~~l~~~~g~tii~vTHd~~~~-~~~~d~i~~l~ 203 (352)
T PRK11144 145 T------APELLLMDEPLASLDLPRKR-----------ELLPYLERLAREINIPILYVSHSLDEI-LRLADRVVVLE 203 (352)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCeEEEEecCHHHH-HHhCCEEEEEe
Confidence 9 99999999997776554432 666677666554 78899999998633 34556666553
No 156
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=7.8e-22 Score=199.22 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=139.3
Q ss_pred eeeecccccccc-----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHR-----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~-----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.++||++.|++ +++|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+........
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~i~~~~~~~~ 79 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVR---VDDTLITSTSKNKD 79 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccccccccC
Confidence 688999999974 36999999999 9999999999999999955 57789999 88873211000011
Q ss_pred cccccccEEEEeCCCc-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGSTV-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....++.++|++|+.. .+... |+.+|+.++.........+..+.+..+++.+|+..
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------- 136 (280)
T PRK13649 80 IKQIRKKVGLVFQFPESQLFEE------TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------------- 136 (280)
T ss_pred HHHHHhheEEEeeChhhhhccc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-----------------
Confidence 1233457999999862 22236 99999987521111222233344555666665531
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
...+..+..+|+|++|++.
T Consensus 137 -------------------------------------------------------------~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 137 -------------------------------------------------------------SLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred -------------------------------------------------------------hhhhCCcccCCHHHHHHHH
Confidence 0112345568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+.++++++.+|+.+... .+..++.+
T Consensus 156 la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiiivsH~~~~~~-~~~d~i~~ 217 (280)
T PRK13649 156 IAGILAM------EPKILVLDEPTAGLDPKGRK-----------ELMTLFKKLHQSGMTIVLVTHLMDDVA-NYADFVYV 217 (280)
T ss_pred HHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeccHHHHH-HhCCEEEE
Confidence 9999998 99999999998886655443 566666665555789999999877432 34556555
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 218 l 218 (280)
T PRK13649 218 L 218 (280)
T ss_pred E
Confidence 5
No 157
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.6e-21 Score=193.95 Aligned_cols=206 Identities=15% Similarity=0.111 Sum_probs=146.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~ 143 (541)
...|.++|++++|+++.+|+|+||+| +|+|||||||||||++|+|.. .+|+|+ ++|..+.. .
T Consensus 2 ~~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~---~~g~~i~~-~- 76 (252)
T PRK14256 2 NNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL---LDDTDIYD-R- 76 (252)
T ss_pred CcEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE---ECCEEccc-c-
Confidence 45689999999999888999999999 999999999999999996652 479999 88873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++.+ |+.+|+.++..... ....+..+++..+++.+|+.....
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------- 139 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAM------SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK----------- 139 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcC------cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-----------
Confidence 111123355799999999999888 99999987521111 122223344566666666542000
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
. ..+..+..+|+|++|
T Consensus 140 ----------------------------------------------------------~------~~~~~~~~LS~G~~q 155 (252)
T PRK14256 140 ----------------------------------------------------------D------RLKSNAMELSGGQQQ 155 (252)
T ss_pred ----------------------------------------------------------H------HhhCCcCcCCHHHHH
Confidence 0 011235568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..+.. ++.++|.+..+ ++++++.+|+.+... .++.+
T Consensus 156 rl~laral~~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~~-~~tiiivsH~~~~~~-~~~d~ 216 (252)
T PRK14256 156 RLCIARTIAV------KPEVILMDEPASALDPISTL-----------KIEELIEELKE-KYTIIIVTHNMQQAA-RVSDY 216 (252)
T ss_pred HHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHh-CCcEEEEECCHHHHH-hhCCE
Confidence 9999999998 99999999998887766553 56666666544 478899999877443 35566
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 217 i~~l~ 221 (252)
T PRK14256 217 TAFFY 221 (252)
T ss_pred EEEEE
Confidence 66653
No 158
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-21 Score=213.12 Aligned_cols=200 Identities=19% Similarity=0.196 Sum_probs=146.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. ......
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~i~~---~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL---IDGQEMRF---ASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCEECCC---CCHHHH
Confidence 4689999999999888999999999 9999999999999999955 46789999 88873211 111112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceecccccc--c-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--Q-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
+++.++||+|+..+++.+ ||.+|+.++.... . ....+..+++..+++.+|+..
T Consensus 77 ~~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 132 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEM------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI------------------ 132 (501)
T ss_pred HhCCEEEEEechhccCCC------CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC------------------
Confidence 345799999999999999 9999998863211 1 112223344555566555532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|++.|
T Consensus 133 -------------------------------------------------------------~~~~~~~~LSgGq~qrv~l 151 (501)
T PRK11288 133 -------------------------------------------------------------DPDTPLKYLSIGQRQMVEI 151 (501)
T ss_pred -------------------------------------------------------------CcCCchhhCCHHHHHHHHH
Confidence 1233456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||..|-+..+.. .+.++|.+..+.+.++++.+|+++... .++.++.++
T Consensus 152 aral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiiiitHd~~~~~-~~~d~i~~l 213 (501)
T PRK11288 152 AKALAR------NARVIAFDEPTSSLSAREIE-----------QLFRVIRELRAEGRVILYVSHRMEEIF-ALCDAITVF 213 (501)
T ss_pred HHHHHh------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 999998 99999999998887665543 566666666556889999999987543 344555554
No 159
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.84 E-value=4.8e-22 Score=189.15 Aligned_cols=178 Identities=21% Similarity=0.244 Sum_probs=125.8
Q ss_pred cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCC
Q psy91 90 HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST 161 (541)
Q Consensus 90 ~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~ 161 (541)
+++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+. .........++.++|++|+.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~~--~~~~~~~~~~~~i~~~~q~~ 77 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVL---IDGEPLD--YSRKGLLERRQRVGLVFQDP 77 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEE---ECCEEcc--ccccchHHHHhhEEEEecCh
Confidence 5567999999999 9999999999999999955 56789999 8887331 11111123345799999986
Q ss_pred c-cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCC
Q psy91 162 V-LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPY 240 (541)
Q Consensus 162 ~-l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~ 240 (541)
. .+... |+.||+.++.........+..+.+..+++.+|+..
T Consensus 78 ~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------------------- 119 (190)
T TIGR01166 78 DDQLFAA------DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-------------------------------- 119 (190)
T ss_pred hhccccc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchh--------------------------------
Confidence 3 23346 99999987522111222233344555666665532
Q ss_pred CCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee
Q psy91 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320 (541)
Q Consensus 241 ~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~ 320 (541)
+.++.+..+|+|++|++.|+++++. ++
T Consensus 120 -----------------------------------------------~~~~~~~~LS~G~~qrv~laral~~------~p 146 (190)
T TIGR01166 120 -----------------------------------------------LRERPTHCLSGGEKKRVAIAGAVAM------RP 146 (190)
T ss_pred -----------------------------------------------hhhCChhhCCHHHHHHHHHHHHHhc------CC
Confidence 1123345689999999999999998 99
Q ss_pred eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchh
Q psy91 321 RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDI 374 (541)
Q Consensus 321 ~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di 374 (541)
+++|+|||..|-+..+.. .+.++|.+..+.++++++.+|+.+.
T Consensus 147 ~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 147 DVLLLDEPTAGLDPAGRE-----------QMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999998887665543 6667777665567889999998763
No 160
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=5.9e-22 Score=187.46 Aligned_cols=192 Identities=16% Similarity=0.216 Sum_probs=154.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.+++|+++||++.+++||||++ +++|||||||||.+|+| +..+++|.|. ++|..+ . ...
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~---~~g~~~----~----~~~ 70 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT---WNGGPL----S----QEI 70 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEE---EcCcch----h----hhh
Confidence 468999999999999999999999 99999999999999999 4567789999 888722 1 133
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
..+|||++.+..|+|.+ ||.|.+.|-...+++++++....+..+|+.+++.+
T Consensus 71 ~~rIGyLPEERGLy~k~------tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~---------------------- 122 (300)
T COG4152 71 KNRIGYLPEERGLYPKM------TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG---------------------- 122 (300)
T ss_pred hhhcccChhhhccCccC------cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccc----------------------
Confidence 45799999999999999 99999887645567888888888888888887765
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+...++..+|.|.+|.+++..+.
T Consensus 123 ---------------------------------------------------------~~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 123 ---------------------------------------------------------KKTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred ---------------------------------------------------------cccchHHHhhhhhhHHHHHHHHH
Confidence 22234556788889999988888
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
+. +|.|+|+|||..|.+.-|.+ .+.+.+.+....+.|+++++|.++-.+ ++|.+|-
T Consensus 146 iH------ePeLlILDEPFSGLDPVN~e-----------lLk~~I~~lk~~GatIifSsH~Me~vE-eLCD~ll 201 (300)
T COG4152 146 IH------EPELLILDEPFSGLDPVNVE-----------LLKDAIFELKEEGATIIFSSHRMEHVE-ELCDRLL 201 (300)
T ss_pred hc------CCCEEEecCCccCCChhhHH-----------HHHHHHHHHHhcCCEEEEecchHHHHH-HHhhhhh
Confidence 88 99999999997776655553 556667777788999999999887443 2444443
No 161
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.9e-22 Score=203.43 Aligned_cols=204 Identities=13% Similarity=0.055 Sum_probs=144.4
Q ss_pred ceeeecccccc----cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC------CCCCCeeecccCCccceecc
Q psy91 79 YIGFATLPEQV----HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 79 ~i~~~~l~~~~----~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~------~~~G~i~~~~~~G~~~~~~~ 142 (541)
.+.++||++.| +...+|++|||+| ||+|+||||||||+++|++. ++.|+|+ ++|+.+.. .
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~---~~g~~i~~-~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR---FDDIDLLR-L 78 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE---ECCEECCc-C
Confidence 57899999999 3457999999999 99999999999999999554 3679999 88874321 1
Q ss_pred ccccc-ccccccEEEEeCCCc--cccccccccCCCcccceecccc---ccc--h-hhHhHhhhHHHHHHHhCCCCccchh
Q psy91 143 AGTKV-RGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATL---PEQ--V-HRKSVKKGFDFTLMVVGESGLGKST 213 (541)
Q Consensus 143 ~~~~~-~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~---~~~--~-~~~e~~~~v~~~L~~vGL~g~~ks~ 213 (541)
..... ..+++.++||||+.. +.|.+ |+.+++.+... ... . ...+..+++.++++.+|+....+
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~-- 150 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSE------RVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD-- 150 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccc------cHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--
Confidence 11111 123457999999975 67778 88888864310 000 0 11233445667777777753100
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
..+..+
T Consensus 151 --------------------------------------------------------------------------~~~~~p 156 (330)
T PRK15093 151 --------------------------------------------------------------------------AMRSFP 156 (330)
T ss_pred --------------------------------------------------------------------------HHhCCc
Confidence 113345
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccc
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSM 372 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~ 372 (541)
..+|+|++|++.|+++++. +++|+|+|||..|.+..... ++.++|.+..+ .+.++++.+|++
T Consensus 157 ~~LSgG~~QRv~iArAL~~------~P~llilDEPts~LD~~~~~-----------~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 157 YELTEGECQKVMIAIALAN------QPRLLIADEPTNAMEPTTQA-----------QIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred hhCCHHHHHHHHHHHHHHC------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECCH
Confidence 6799999999999999999 99999999998876654443 67777777665 478999999998
Q ss_pred hhhhhcccceeEEE
Q psy91 373 DIEERGVKLRLTVV 386 (541)
Q Consensus 373 di~~~~l~~rvnvI 386 (541)
.... .+..++.++
T Consensus 220 ~~v~-~~~dri~vm 232 (330)
T PRK15093 220 QMLS-QWADKINVL 232 (330)
T ss_pred HHHH-HhCCEEEEE
Confidence 7654 355666555
No 162
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-21 Score=195.19 Aligned_cols=203 Identities=15% Similarity=0.118 Sum_probs=142.1
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++++++.|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|+ ++|..+.. ..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~i~~--~~ 80 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI---YEGKNIYS--NN 80 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE---ECCEeccc--cc
Confidence 4689999999999888999999999 999999999999999996642 379999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++||+|+..+++ + |+.||+.++...... ......+.+..+++.+|+...
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 139 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPFL-M------SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-------------- 139 (254)
T ss_pred ccHHHHhhceEEEeecccccc-C------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh--------------
Confidence 111233557999999988774 7 999999876321111 122233445556666554210
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+. + ..+..+..+|+|++|+
T Consensus 140 -------------------------------------------------------l~-----~-~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 140 -------------------------------------------------------VK-----D-KLNTNALSLSGGQQQR 158 (254)
T ss_pred -------------------------------------------------------hH-----H-HHhCCcccCCHHHHHH
Confidence 00 0 1122456799999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ +.++++.+|+.+... .+..++
T Consensus 159 v~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tvii~sH~~~~~~-~~~d~i 219 (254)
T PRK14273 159 LCIARTLAI------EPNVILMDEPTSALDPISTG-----------KIEELIINLKE-SYTIIIVTHNMQQAG-RISDRT 219 (254)
T ss_pred HHHHHHHHc------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhCCEE
Confidence 999999998 99999999998886655543 55666666543 578889999887533 345566
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 220 ~~l 222 (254)
T PRK14273 220 AFF 222 (254)
T ss_pred EEE
Confidence 555
No 163
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-21 Score=194.51 Aligned_cols=206 Identities=16% Similarity=0.138 Sum_probs=145.2
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~ 142 (541)
|.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|. ++|..+..
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~---~~g~~i~~-- 75 (251)
T PRK14270 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL---LDGKNIYD-- 75 (251)
T ss_pred CccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE---ECCEeccc--
Confidence 356789999999999888999999999 999999999999999997642 579999 88873311
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.++|++|+..+++ . |+.+|+.++....+. .......++..+++.+|+...
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 136 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-M------SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE------------ 136 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-C------cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchh------------
Confidence 01111123457999999988886 7 999999876211111 122233445556666665310
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+. + ..+..+..+|+|++
T Consensus 137 ---------------------------------------------------------~~-----~-~~~~~~~~LS~G~~ 153 (251)
T PRK14270 137 ---------------------------------------------------------VK-----D-DLKKSALKLSGGQQ 153 (251)
T ss_pred ---------------------------------------------------------hh-----h-HhhCCcccCCHHHH
Confidence 00 0 11224557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+.+.. ..+..
T Consensus 154 qrv~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~L~~~~~-~~tiiivsH~~~~~-~~~~d 214 (251)
T PRK14270 154 QRLCIARTIAV------KPDVILMDEPTSALDPISTL-----------KIEDLMVELKK-EYTIVIVTHNMQQA-SRVSD 214 (251)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHh-CCeEEEEEcCHHHH-HHhcC
Confidence 99999999988 99999999998887766553 56666666544 47888999987643 24556
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 215 ~v~~l~ 220 (251)
T PRK14270 215 YTAFFL 220 (251)
T ss_pred EEEEEE
Confidence 666663
No 164
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=1.9e-21 Score=188.66 Aligned_cols=193 Identities=18% Similarity=0.223 Sum_probs=139.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++|++++|+++.+|+++||++ +|+|||||||||||++|+| .+..|+|. ++|..+ ... .
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~i----~~~---~ 79 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQ---IDGKTA----TRG---D 79 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEE---ECCEEc----cch---h
Confidence 4689999999999888999999999 9999999999999999955 56789999 888732 111 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++.+ |+.+|+.+...... ....+.+..++..+|+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~------t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~--------------------- 129 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADL------STLENLHFLCGLHG---RRAKQMPGSALAIVGLAG--------------------- 129 (214)
T ss_pred hhhceEEeecCcccccCC------cHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChh---------------------
Confidence 234689999998888888 99999876411000 011122333344333321
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.+..+..+|+|++|++.|+++
T Consensus 130 ----------------------------------------------------------~~~~~~~~LS~G~~qrv~lara 151 (214)
T PRK13543 130 ----------------------------------------------------------YEDTLVRQLSAGQKKRLALARL 151 (214)
T ss_pred ----------------------------------------------------------hccCChhhCCHHHHHHHHHHHH
Confidence 1233455689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+.... ++.++.++
T Consensus 152 l~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~i~~l 210 (214)
T PRK13543 152 WLS------PAPLWLLDEPYANLDLEGIT-----------LVNRMISAHLRGGGAALVTTHGAYAAPP-VRTRMLTL 210 (214)
T ss_pred Hhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecChhhhhh-hcceEEEE
Confidence 998 99999999998886655543 6677777666667899999998774432 44455444
No 165
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.84 E-value=1e-21 Score=188.65 Aligned_cols=178 Identities=18% Similarity=0.215 Sum_probs=134.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++||++.|+++.+|+++||+| ||+|||||||||||++|++ .+.+|+|. ++|..+. ... ...+
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~----~~~-~~~~ 72 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL---LNGGPLD----FQR-DSIA 72 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEecc----ccc-HHhh
Confidence 46889999999889999999999 9999999999999999955 46789999 8887321 111 2344
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+++|+.+... . ...+++..+++.+|+.+.
T Consensus 73 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~-~-----~~~~~~~~~l~~~~l~~~---------------------- 118 (201)
T cd03231 73 RGLLYLGHAPGIKTTL------SVLENLRFWHA-D-----HSDEQVEEALARVGLNGF---------------------- 118 (201)
T ss_pred hheEEeccccccCCCc------CHHHHHHhhcc-c-----ccHHHHHHHHHHcCChhh----------------------
Confidence 5799999999888888 99999987521 0 012345566666666421
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+..+..+|+|++|++.|+++++
T Consensus 119 ---------------------------------------------------------~~~~~~~LS~G~~qrl~laral~ 141 (201)
T cd03231 119 ---------------------------------------------------------EDRPVAQLSAGQQRRVALARLLL 141 (201)
T ss_pred ---------------------------------------------------------hcCchhhCCHHHHHHHHHHHHHh
Confidence 12234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
. +++++|+|||..|-+..... .+.+.|.+..+.+.++++.+|+..
T Consensus 142 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 142 S------GRPLWILDEPTTALDKAGVA-----------RFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred c------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCch
Confidence 8 99999999998886655443 666667666556788888888654
No 166
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.6e-21 Score=195.66 Aligned_cols=203 Identities=15% Similarity=0.078 Sum_probs=143.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++||+++|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|..+... .
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~---~~g~~i~~~--~ 86 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVL---FDGTDLYDP--R 86 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE---ECCEEcccc--c
Confidence 4689999999999889999999999 99999999999999999664 4689999 888732110 0
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......++.++||+|+..+++ . |+.||+.++....... ....+.+..+++.+|+...
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------------- 143 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-K------SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDE--------------- 143 (269)
T ss_pred CCHHHHhhceEEEccCCccch-h------hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcch---------------
Confidence 111223457999999988775 6 8999998763211111 1122344455555554310
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ .. ..+..+..+|+|++|++
T Consensus 144 ------------------------------------------------------l-----~~-~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 144 ------------------------------------------------------C-----KD-KLNESGYSLSGGQQQRL 163 (269)
T ss_pred ------------------------------------------------------h-----hh-hhCCCcccCCHHHHHHH
Confidence 0 00 11334567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ ++++++.+|+.+.. ..++.++.
T Consensus 164 ~laral~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~l~~~~~-~~tiiivtH~~~~~-~~~~d~i~ 224 (269)
T PRK14259 164 CIARTIAI------EPEVILMDEPCSALDPISTL-----------KIEETMHELKK-NFTIVIVTHNMQQA-VRVSDMTA 224 (269)
T ss_pred HHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHH-HHhcCEEE
Confidence 99999998 99999999998886655543 56666665533 57889999987744 34666777
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 225 ~l~ 227 (269)
T PRK14259 225 FFN 227 (269)
T ss_pred EEe
Confidence 765
No 167
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=7.5e-22 Score=193.52 Aligned_cols=195 Identities=15% Similarity=0.193 Sum_probs=137.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-ccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-RGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~~~ 150 (541)
+.++||++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ..... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIR---LDGEDI----TKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCEEC----CCCCHHHHH
Confidence 46889999999889999999999 9999999999999999955 46789999 888732 11111 112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++.+ |+.+|+.++....... ..+.+..++..++.
T Consensus 74 ~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~------------------------ 120 (230)
T TIGR03410 74 RAGIAYVPQGREIFPRL------TVEENLLTGLAALPRR---SRKIPDEIYELFPV------------------------ 120 (230)
T ss_pred HhCeEEeccCCcccCCC------cHHHHHHHHHHhcCcc---hHHHHHHHHHHHHh------------------------
Confidence 45799999999999988 9999987752111100 01111222222210
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
... ..+..+..+|+|++|++.|++++
T Consensus 121 -----------------------------------------------------l~~-~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 121 -----------------------------------------------------LKE-MLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred -----------------------------------------------------HHH-HhhCChhhCCHHHHHHHHHHHHH
Confidence 001 22345667899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|-+..... ++.+.|.+..+. ++++++.+|+.+... .++.++.++
T Consensus 147 ~~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~v~~l 205 (230)
T TIGR03410 147 VT------RPKLLLLDEPTEGIQPSIIK-----------DIGRVIRRLRAEGGMAILLVEQYLDFAR-ELADRYYVM 205 (230)
T ss_pred hc------CCCEEEecCCcccCCHHHHH-----------HHHHHHHHHHHcCCcEEEEEeCCHHHHH-HhCCEEEEE
Confidence 98 99999999998876655543 667777766553 789999999987443 344555555
No 168
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.84 E-value=1.2e-21 Score=204.00 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=138.6
Q ss_pred cccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEE
Q psy91 84 TLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWG 155 (541)
Q Consensus 84 ~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g 155 (541)
||+++|+++.+ ++||+| +|+|||||||||||++|+| .+++|+|. ++|+.+............++.++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~---~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIV---LNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEECccCccccccchhhCCeE
Confidence 78889987654 899998 9999999999999999955 56789999 88873321100001123345799
Q ss_pred EEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCC
Q psy91 156 VVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235 (541)
Q Consensus 156 ~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~ 235 (541)
||+|+..+++++ ||.+|+.|+.... ...+..+++.++++.+|+.+
T Consensus 79 ~v~q~~~l~~~~------tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~--------------------------- 123 (354)
T TIGR02142 79 YVFQEARLFPHL------SVRGNLRYGMKRA--RPSERRISFERVIELLGIGH--------------------------- 123 (354)
T ss_pred EEecCCccCCCC------cHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChh---------------------------
Confidence 999999999999 9999998862211 11222334556666665532
Q ss_pred CCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeee
Q psy91 236 GSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315 (541)
Q Consensus 236 ~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e 315 (541)
+.++.+..+|+|++|++.|+++++.
T Consensus 124 ----------------------------------------------------~~~~~~~~LSgGqkqRvalAraL~~--- 148 (354)
T TIGR02142 124 ----------------------------------------------------LLGRLPGRLSGGEKQRVAIGRALLS--- 148 (354)
T ss_pred ----------------------------------------------------HhcCChhhCCHHHHHHHHHHHHHHc---
Confidence 2233456789999999999999998
Q ss_pred cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 316 ~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|.+..... .+.++|.+..+. +.++++.+|+.+.. ..+..++.++
T Consensus 149 ---~p~lllLDEPts~LD~~~~~-----------~l~~~L~~l~~~~g~tiiivtH~~~~~-~~~~d~i~~l 205 (354)
T TIGR02142 149 ---SPRLLLMDEPLAALDDPRKY-----------EILPYLERLHAEFGIPILYVSHSLQEV-LRLADRVVVL 205 (354)
T ss_pred ---CCCEEEEcCCCcCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCEEEEE
Confidence 99999999998876655443 667777766554 78899999988743 3355566555
No 169
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.84 E-value=1.2e-21 Score=201.68 Aligned_cols=207 Identities=14% Similarity=0.149 Sum_probs=147.0
Q ss_pred CCCceeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CC---CCCeeecccCCcccee
Q psy91 76 DRDYIGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DL---YGDRKVPNVNGSNTVI 140 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~---~G~i~~~~~~G~~~~~ 140 (541)
..+.+.++||++.|+ ...+|+||||+| ||+|+||||||||+++|++. +. +|+|. ++|..+..
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~---~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT---FNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE---ECCEECCc
Confidence 445789999999995 356999999999 99999999999999999553 33 79999 88874321
Q ss_pred cccccccc-cccccEEEEeCCC--ccccccccccCCCcccceeccc-cccchhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 141 EVAGTKVR-GRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFAT-LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 141 ~~~~~~~~-~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~-~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
......+ .+.+.++||||+. .++|.+ ++.+++.... ........+..+++.++++.+|+.+..
T Consensus 86 -~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~------~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~------ 152 (330)
T PRK09473 86 -LPEKELNKLRAEQISMIFQDPMTSLNPYM------RVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEAR------ 152 (330)
T ss_pred -CCHHHHHHHhcCCEEEEEcCchhhcCCCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChH------
Confidence 1111111 2235799999997 688888 8888776541 111223344455666777777664200
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
. ..++.+..+
T Consensus 153 ---------------------------------------------------------------------~-~~~~~p~~L 162 (330)
T PRK09473 153 ---------------------------------------------------------------------K-RMKMYPHEF 162 (330)
T ss_pred ---------------------------------------------------------------------H-HhcCCcccC
Confidence 0 112345679
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~ 375 (541)
|+|++|++.|+++++. +++|+|+|||..|.+..... ++.+.|.+..+. +.++++.+|+++..
T Consensus 163 SgG~~QRv~IArAL~~------~P~llilDEPts~LD~~~~~-----------~i~~lL~~l~~~~g~til~iTHdl~~~ 225 (330)
T PRK09473 163 SGGMRQRVMIAMALLC------RPKLLIADEPTTALDVTVQA-----------QIMTLLNELKREFNTAIIMITHDLGVV 225 (330)
T ss_pred CHHHHHHHHHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 9999999999999998 99999999998876655443 666777766554 78999999998854
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
. .++.++.++
T Consensus 226 ~-~~~Dri~vm 235 (330)
T PRK09473 226 A-GICDKVLVM 235 (330)
T ss_pred H-HhCCEEEEE
Confidence 3 356666665
No 170
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.84 E-value=7.7e-22 Score=189.05 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=133.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++++++.|+++.+|+++||+| +|+||||||||||+++|+| .+..|+|. ++|..+. ... ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~----~~~-~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR---WNGTALA----EQR-DEPH 72 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEE---ECCEEcc----cch-HHhh
Confidence 46789999999999999999999 9999999999999999955 47789999 8887321 111 1234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+...... .+ .+.+..+++.+|+...
T Consensus 73 ~~i~~~~q~~~~~~~~------tv~~~l~~~~~~~~---~~-~~~~~~~l~~~~l~~~---------------------- 120 (198)
T TIGR01189 73 RNILYLGHLPGLKPEL------SALENLHFWAAIHG---GA-QRTIEDALAAVGLTGF---------------------- 120 (198)
T ss_pred hheEEeccCcccccCC------cHHHHHHHHHHHcC---Cc-HHHHHHHHHHcCCHHH----------------------
Confidence 5789999998888888 99999876521111 11 2234555666555321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+..+..+|+|++|++.|+++++
T Consensus 121 ---------------------------------------------------------~~~~~~~LS~G~~qrv~la~al~ 143 (198)
T TIGR01189 121 ---------------------------------------------------------EDLPAAQLSAGQQRRLALARLWL 143 (198)
T ss_pred ---------------------------------------------------------hcCChhhcCHHHHHHHHHHHHHh
Confidence 12234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
. +++++|+|||..|-+..... .+.+.+.+..+.++++++.+|+..
T Consensus 144 ~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 144 S------RAPLWILDEPTTALDKAGVA-----------LLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred c------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEEcccc
Confidence 8 99999999998887655443 566666665555788888888653
No 171
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=1.5e-21 Score=195.90 Aligned_cols=204 Identities=13% Similarity=0.156 Sum_probs=138.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CC--------CCCeeecccCCccceeccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DL--------YGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~--------~G~i~~~~~~G~~~~~~~~ 143 (541)
+.++|++++|+++.+|+++||+| +|+|||||||||||++|+|. +. .|+|. ++|..+ .
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~---~~g~~~----~ 74 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVT---LNGEPL----A 74 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEE---ECCEEc----c
Confidence 67899999999889999999999 99999999999999999664 44 78888 777722 1
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccc----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
......+++.++|++|+..+++.+ |+.||+.++..+.. ....+..+.+..+++.+|+..
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------- 137 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAF------SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA----------- 137 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCC------cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------
Confidence 111122344589999998766667 99999987632210 001112233444555554421
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
+.++.+..+|+|
T Consensus 138 --------------------------------------------------------------------~~~~~~~~LSgG 149 (272)
T PRK13547 138 --------------------------------------------------------------------LVGRDVTTLSGG 149 (272)
T ss_pred --------------------------------------------------------------------hhcCCcccCCHH
Confidence 112345678999
Q ss_pred CCcceEEeeeEEEe---eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhh
Q psy91 300 QGKTTTIEKKSMDI---EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIE 375 (541)
Q Consensus 300 ~~q~v~I~~~~~~i---~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~ 375 (541)
++|++.|+++++.- .....+++++|+|||..|-+..... .+.++|.+..+. +.++++.+|+.+..
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tviiisH~~~~~ 218 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH-----------RLLDTVRRLARDWNLGVLAIVHDPNLA 218 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 99999999998710 0000179999999998876655443 566666666554 78899999987744
Q ss_pred hhcccceeEEEc
Q psy91 376 ERGVKLRLTVVD 387 (541)
Q Consensus 376 ~~~l~~rvnvIp 387 (541)
. ++..++.++.
T Consensus 219 ~-~~~d~i~~l~ 229 (272)
T PRK13547 219 A-RHADRIAMLA 229 (272)
T ss_pred H-HhCCEEEEEE
Confidence 3 3555666653
No 172
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.5e-21 Score=197.98 Aligned_cols=205 Identities=19% Similarity=0.146 Sum_probs=140.5
Q ss_pred Cceeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++|++++|+++ .+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+......
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~~~~~ 81 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTI---VGDYAIPANLKK 81 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCEEccccccc
Confidence 458999999999864 4999999999 9999999999999999955 46789999 888732110000
Q ss_pred -cccccccccEEEEeCCCcc-ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 145 -TKVRGRQYPWGVVEGSTVL-TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 145 -~~~~~~~~~~g~V~Q~~~l-~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
......++.++|++|+... +... |+.+|+.++............+.+..+++.+|+..
T Consensus 82 ~~~~~~~~~~i~~v~q~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------------- 141 (289)
T PRK13645 82 IKEVKRLRKEIGLVFQFPEYQLFQE------TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-------------- 141 (289)
T ss_pred cccHHHHhccEEEEEeCcchhhhhh------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh--------------
Confidence 1112334579999998632 2235 89999987632111222223334445555555421
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+ +.++.+..+|+|++|
T Consensus 142 ---------------------------------------------------------------~-~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 142 ---------------------------------------------------------------D-YVKRSPFELSGGQKR 157 (289)
T ss_pred ---------------------------------------------------------------h-HhcCChhhCCHHHHH
Confidence 0 122345568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~ 381 (541)
++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ .++++++.+|+.+.. .++..
T Consensus 158 rv~laral~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiiiisH~~~~~-~~~~d 219 (289)
T PRK13645 158 RVALAGIIAM------DGNTLVLDEPTGGLDPKGEE-----------DFINLFERLNKEYKKRIIMVTHNMDQV-LRIAD 219 (289)
T ss_pred HHHHHHHHHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCC
Confidence 9999999998 99999999998887665543 56666666654 378899999987743 33555
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 220 ~i~~l~ 225 (289)
T PRK13645 220 EVIVMH 225 (289)
T ss_pred EEEEEE
Confidence 665553
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.8e-21 Score=191.23 Aligned_cols=195 Identities=17% Similarity=0.251 Sum_probs=142.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.+++++++|+++.+|+++||+| +|+|||||||||||++|++ .+..|+|. ++|..+ .... ..+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~---~~g~~~----~~~~--~~~ 71 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL---LDGKDI----TNLP--PHK 71 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEc----CcCC--hhh
Confidence 46889999999889999999999 9999999999999999955 46689999 888722 2111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++............+.+..+++.+|+..
T Consensus 72 ~~i~~~~q~~~~~~~~------t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 122 (232)
T cd03300 72 RPVNTVFQNYALFPHL------TVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG----------------------- 122 (232)
T ss_pred cceEEEecccccCCCC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------------------
Confidence 5799999999988888 99999876521111122223334555666666542
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 123 --------------------------------------------------------~~~~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 123 --------------------------------------------------------YANRKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred --------------------------------------------------------hhcCChhhCCHHHHHHHHHHHHHh
Confidence 112234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..... .+.+.|.+..+. ++++++.+|+.+.. .....++.++
T Consensus 147 ~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~~~~~~tiii~sh~~~~~-~~~~d~i~~l 204 (232)
T cd03300 147 N------EPKVLLLDEPLGALDLKLRK-----------DMQLELKRLQKELGITFVFVTHDQEEA-LTMSDRIAVM 204 (232)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHH-HHhcCEEEEE
Confidence 9 99999999998887766654 666777766543 78999999987643 2344455444
No 174
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.83 E-value=1.7e-21 Score=195.30 Aligned_cols=201 Identities=14% Similarity=0.126 Sum_probs=141.2
Q ss_pred Cceeeecccccccc---------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcccee
Q psy91 78 DYIGFATLPEQVHR---------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~ 140 (541)
+.+.++||+++|+. +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~-- 77 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL---IDDHPL-- 77 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEE---ECCEEC--
Confidence 35889999999962 46999999999 9999999999999999955 46789999 888732
Q ss_pred cccccccccccccEEEEeCCCc--cccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 141 EVAGTKVRGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 141 ~~~~~~~~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.......+++.++|++|+.. +++.+ |+.+++.++.. ..........+.+..+++.+|+..
T Consensus 78 --~~~~~~~~~~~i~~v~q~~~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 140 (267)
T PRK15112 78 --HFGDYSYRSQRIRMIFQDPSTSLNPRQ------RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP--------- 140 (267)
T ss_pred --CCCchhhHhccEEEEecCchhhcCcch------hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh---------
Confidence 21112223356999999864 56677 88888776411 111122233345566666666621
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
...+..+..+|
T Consensus 141 ---------------------------------------------------------------------~~~~~~~~~LS 151 (267)
T PRK15112 141 ---------------------------------------------------------------------DHASYYPHMLA 151 (267)
T ss_pred ---------------------------------------------------------------------HHHhcCchhcC
Confidence 01122345689
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhh
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEE 376 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~ 376 (541)
+|++|++.|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+. +.++++.+|+.+...
T Consensus 152 ~G~~qrv~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tviivsH~~~~~~ 214 (267)
T PRK15112 152 PGQKQRLGLARALIL------RPKVIIADEALASLDMSMRS-----------QLINLMLELQEKQGISYIYVTQHLGMMK 214 (267)
T ss_pred HHHHHHHHHHHHHHh------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 999999999999998 99999999998887665543 566667766543 788999999877443
Q ss_pred hcccceeEEEc
Q psy91 377 RGVKLRLTVVD 387 (541)
Q Consensus 377 ~~l~~rvnvIp 387 (541)
.+..++.++.
T Consensus 215 -~~~d~i~~l~ 224 (267)
T PRK15112 215 -HISDQVLVMH 224 (267)
T ss_pred -HhcCEEEEEE
Confidence 4556666653
No 175
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.83 E-value=1.6e-21 Score=190.35 Aligned_cols=191 Identities=16% Similarity=0.181 Sum_probs=133.5
Q ss_pred eeeecccccccc-------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccC--Cc--ccee
Q psy91 80 IGFATLPEQVHR-------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVN--GS--NTVI 140 (541)
Q Consensus 80 i~~~~l~~~~~~-------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~--G~--~~~~ 140 (541)
+.++|+++.|+. +.+|+++||+| +|+|||||||||||++|++ .+..|+|. ++ |. .+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~~~g~~~~~~- 77 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL---VRHEGAWVDLA- 77 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE---EecCCCccchh-
Confidence 678999999963 46999999999 9999999999999999955 46789998 66 32 110
Q ss_pred ccccccc-ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 141 EVAGTKV-RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 141 ~~~~~~~-~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
..+.... ..+++.++|++|+..+++.+ |+.|++.+.....+.......+.+..+++.+|+.+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------- 140 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRV------SALEVVAEPLLERGVPREAARARARELLARLNIPE----------- 140 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------
Confidence 0010100 11234689999999999999 99999876411111112222334455555555432
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
.+.+..+..+|+|
T Consensus 141 -------------------------------------------------------------------~~~~~~~~~LS~G 153 (224)
T TIGR02324 141 -------------------------------------------------------------------RLWHLPPATFSGG 153 (224)
T ss_pred -------------------------------------------------------------------hhhhCCcccCCHH
Confidence 0112235568999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+.+.++++.+|+.++.
T Consensus 154 ~~qrl~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 154 EQQRVNIARGFIA------DYPILLLDEPTASLDAANRQ-----------VVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred HHHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999998 99999999998887655543 56666766655578899999996644
No 176
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=1.5e-21 Score=213.83 Aligned_cols=202 Identities=15% Similarity=0.090 Sum_probs=144.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccC---------------
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVN--------------- 134 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~--------------- 134 (541)
|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. +.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~---~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII---YHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEE---Eeccccccccccccccc
Confidence 46889999999888999999999 99999999999999999664 7789998 54
Q ss_pred --------Cccce---ecccc---cccccccccEEEEeCC-CccccccccccCCCcccceeccccccchhhHhHhhhHHH
Q psy91 135 --------GSNTV---IEVAG---TKVRGRQYPWGVVEGS-TVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDF 199 (541)
Q Consensus 135 --------G~~~~---~~~~~---~~~~~~~~~~g~V~Q~-~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~ 199 (541)
|..+. ..... ......++.++||+|+ ..+++.+ |+.+|+.++....+....+..+++.+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD------TVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 21110 00000 0011234569999997 6888888 99999987521122223344456667
Q ss_pred HHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHH
Q psy91 200 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLV 279 (541)
Q Consensus 200 ~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~i 279 (541)
+++.+|+.+
T Consensus 152 ~l~~~gl~~----------------------------------------------------------------------- 160 (520)
T TIGR03269 152 LIEMVQLSH----------------------------------------------------------------------- 160 (520)
T ss_pred HHHHcCChh-----------------------------------------------------------------------
Confidence 777776643
Q ss_pred hhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc
Q psy91 280 NSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN 359 (541)
Q Consensus 280 n~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~ 359 (541)
+.++.+..+|+|++|++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..
T Consensus 161 --------~~~~~~~~LSgGq~qrv~iA~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~ 215 (520)
T TIGR03269 161 --------RITHIARDLSGGEKQRVVLARQLAK------EPFLFLADEPTGTLDPQTAK-----------LVHNALEEAV 215 (520)
T ss_pred --------hhhcCcccCCHHHHHHHHHHHHHhc------CCCEEEeeCCcccCCHHHHH-----------HHHHHHHHHH
Confidence 1123456799999999999999998 99999999998876655543 5666666664
Q ss_pred c-cCcceeeccccchhhhhcccceeEEEc
Q psy91 360 R-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 360 ~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+ .+.++++.+|+.+... .++.++.++.
T Consensus 216 ~~~g~tviivtHd~~~~~-~~~d~i~~l~ 243 (520)
T TIGR03269 216 KASGISMVLTSHWPEVIE-DLSDKAIWLE 243 (520)
T ss_pred HhcCcEEEEEeCCHHHHH-HhcCEEEEEe
Confidence 4 4788999999987543 3555666553
No 177
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.7e-21 Score=189.87 Aligned_cols=193 Identities=18% Similarity=0.192 Sum_probs=138.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++||+++|++.. .++||+| +|+|||||||||||++|+| .+.+|+|. ++|+.+ .... ...
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~--~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT---LNGQDH----TTTP--PSR 70 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCeec----CcCC--hhh
Confidence 67899999998644 4899998 9999999999999999955 56789999 888732 1111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.||+.++..+.........+++.++++.+|+..
T Consensus 71 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 121 (232)
T PRK10771 71 RPVSMLFQENNLFSHL------TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED----------------------- 121 (232)
T ss_pred ccEEEEecccccccCC------cHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH-----------------------
Confidence 4699999999999888 99999987522110011122334555566655532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|++.|+++++
T Consensus 122 --------------------------------------------------------~~~~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 122 --------------------------------------------------------LLARLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred --------------------------------------------------------HHhCCcccCCHHHHHHHHHHHHHh
Confidence 122344568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.++|.+..+ .+.++++.+|+.+... .+..++.++
T Consensus 146 ~------~p~lllLDEP~~gLD~~~~~-----------~~~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 203 (232)
T PRK10771 146 R------EQPILLLDEPFSALDPALRQ-----------EMLTLVSQVCQERQLTLLMVSHSLEDAA-RIAPRSLVV 203 (232)
T ss_pred c------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEECCHHHHH-HhCCEEEEE
Confidence 9 99999999998887665553 66677776654 3788999999988443 344555555
No 178
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=1.7e-21 Score=186.98 Aligned_cols=182 Identities=15% Similarity=0.091 Sum_probs=134.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++|++++|+++.+|+++||++ +|+|||||||||||++|+| .+..|+|+ ++|+.+ ... ....+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~---~~g~~~----~~~-~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL---FERQSI----KKD-LCTYQ 73 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEE---ECCCcc----ccC-HHHHH
Confidence 67899999999889999999999 9999999999999999955 47789999 888732 111 12234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++.... . ....+.++++.+++..
T Consensus 74 ~~i~~~~q~~~~~~~~------tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~~----------------------- 119 (200)
T PRK13540 74 KQLCFVGHRSGINPYL------TLRENCLYDIHFS---P--GAVGITELCRLFSLEH----------------------- 119 (200)
T ss_pred hheEEeccccccCcCC------CHHHHHHHHHhcC---c--chHHHHHHHHHcCCch-----------------------
Confidence 5799999999888888 9999988752110 0 1123344444444321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..+..+..+|+|++|++.|+++++
T Consensus 120 --------------------------------------------------------~~~~~~~~LS~G~~~rv~laral~ 143 (200)
T PRK13540 120 --------------------------------------------------------LIDYPCGLLSSGQKRQVALLRLWM 143 (200)
T ss_pred --------------------------------------------------------hhhCChhhcCHHHHHHHHHHHHHh
Confidence 112234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.....
T Consensus 144 ~------~p~~lilDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 144 S------KAKLWLLDEPLVALDELSLL-----------TIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred c------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 9 99999999998886655443 666777766556788899998876554
No 179
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.83 E-value=2.5e-21 Score=193.99 Aligned_cols=202 Identities=17% Similarity=0.181 Sum_probs=140.2
Q ss_pred ceeeeccccccc---------ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceec
Q psy91 79 YIGFATLPEQVH---------RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 79 ~i~~~~l~~~~~---------~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~ 141 (541)
.+.++||++.|+ ++.+|+++||+| ||+|||||||||||++|+| .+.+|+|+ ++|..+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~- 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS---FRGQDLYQ- 77 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEccc-
Confidence 378899999995 367999999999 9999999999999999955 47789999 88873211
Q ss_pred ccccccccccccEEEEeCCC--ccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 142 VAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.........++.++||+|+. .+++.+ |+.+|+.++.. ..........+++..+++.+|+..
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------- 141 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRM------TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS---------- 141 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhhcCCCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 11111112345799999986 466778 99998876411 011112223344555666665531
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
.+.+..+..+|+
T Consensus 142 --------------------------------------------------------------------~~~~~~~~~LSg 153 (265)
T TIGR02769 142 --------------------------------------------------------------------EDADKLPRQLSG 153 (265)
T ss_pred --------------------------------------------------------------------hhhhCChhhCCH
Confidence 011233456899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~ 377 (541)
|++|++.|+++++. +++++|+|||..|.+..... .+.++|.+..+. ++++++.+|+.+...
T Consensus 154 Ge~qrv~laral~~------~p~illLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~g~tiiivsH~~~~~~- 215 (265)
T TIGR02769 154 GQLQRINIARALAV------KPKLIVLDEAVSNLDMVLQA-----------VILELLRKLQQAFGTAYLFITHDLRLVQ- 215 (265)
T ss_pred HHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEeCCHHHHH-
Confidence 99999999999998 99999999998776654443 666777766554 789999999887543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.+..++.++
T Consensus 216 ~~~d~i~~l 224 (265)
T TIGR02769 216 SFCQRVAVM 224 (265)
T ss_pred HHhcEEEEE
Confidence 244555555
No 180
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.83 E-value=2.5e-21 Score=190.82 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=141.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+++++++++|+++.+|+++||++ +|+||||||||||+++|+| .+.+|+|. ++|..+ .... ..+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~---i~g~~~----~~~~--~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR---LNGQDA----TRVH--ARD 71 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEc----CcCC--hhh
Confidence 46889999999889999999999 9999999999999999955 46789999 788732 1111 224
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+.............+.+..+++.+|+..
T Consensus 72 ~~i~~~~q~~~~~~~~------t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 122 (237)
T TIGR00968 72 RKIGFVFQHYALFKHL------TVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG----------------------- 122 (237)
T ss_pred cCEEEEecChhhccCC------cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------------------
Confidence 5799999999999888 99999987521111111222334445555555422
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 123 --------------------------------------------------------~~~~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 123 --------------------------------------------------------LGDRYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred --------------------------------------------------------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 112234468999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||..|-+..+.. .+.++|.+..+. ++++++.+|..+.. ..+..++.++.
T Consensus 147 ~------~p~llllDEP~~~LD~~~~~-----------~~~~~l~~~~~~~~~tvli~sH~~~~~-~~~~d~i~~l~ 205 (237)
T TIGR00968 147 V------EPQVLLLDEPFGALDAKVRK-----------ELRSWLRKLHDEVHVTTVFVTHDQEEA-MEVADRIVVMS 205 (237)
T ss_pred c------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HhhcCEEEEEE
Confidence 8 99999999998887766553 666777766554 78999999987743 33455555553
No 181
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.83 E-value=1.8e-21 Score=189.54 Aligned_cols=199 Identities=21% Similarity=0.187 Sum_probs=142.5
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.++|+++.|++ +.+|+++||++ ||+||||||||||+++|+| .+.+|+|+ ++|..+. .......
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~---~~g~~~~-~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK---VLGQELY-GASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEEhH-hcCHhHH
Confidence 678999999975 67999999999 9999999999999999955 46789999 8887321 1111111
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
...++.++|++|+..+++.+ |+.+|+.++.... .....+....+.++++.+|+..
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~------t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------ 133 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFL------TARQNVQMALELQPNLSYQEARERARAMLEAVGLGD------------------ 133 (220)
T ss_pred HHHHhheEEEcCChhhcCCC------CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 12346799999999999888 9999998762211 1122333345566666666532
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..+..+..+|+|++|++.|
T Consensus 134 -------------------------------------------------------------~~~~~~~~lS~G~~qrv~l 152 (220)
T TIGR02982 134 -------------------------------------------------------------HLDYYPHNLSGGQKQRVAI 152 (220)
T ss_pred -------------------------------------------------------------hhhcChhhCCHHHHHHHHH
Confidence 1122334689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..... .+.+.|.+..+ .++++++.+|+.++. .+..++.+
T Consensus 153 aral~~------~p~illlDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~~sh~~~~~--~~~d~v~~ 213 (220)
T TIGR02982 153 ARALVH------RPKLVLADEPTAALDSKSGR-----------DVVELMQKLAREQGCTILIVTHDNRIL--DVADRIVH 213 (220)
T ss_pred HHHHhc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEeCCHHHH--hhCCEEEE
Confidence 999998 99999999998876655443 56666666554 478999999998753 35556555
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 214 l 214 (220)
T TIGR02982 214 M 214 (220)
T ss_pred E
Confidence 4
No 182
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.83 E-value=3.3e-21 Score=186.80 Aligned_cols=192 Identities=19% Similarity=0.209 Sum_probs=138.2
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
.++||++.|+. ++.++||++ +|+||||||||||+++|+| .+.+|+|+ ++|..+ ... ...++
T Consensus 2 ~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~--~~~~~ 70 (213)
T TIGR01277 2 ALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK---VNDQSH----TGL--APYQR 70 (213)
T ss_pred eEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEEc----ccC--Chhcc
Confidence 57899999974 578999999 9999999999999999955 46789999 888732 111 12345
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
.++||+|+..+++.+ |+.+|+.++.............++.++++.+|+..
T Consensus 71 ~i~~v~q~~~~~~~~------t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------------ 120 (213)
T TIGR01277 71 PVSMLFQENNLFAHL------TVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD------------------------ 120 (213)
T ss_pred ceEEEeccCccCCCC------cHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH------------------------
Confidence 799999999999889 99999976521111111122334555666666532
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
+.++.+..+|+|++|++.|+++++.
T Consensus 121 -------------------------------------------------------~~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 121 -------------------------------------------------------YLDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred -------------------------------------------------------HhhCCcccCCHHHHHHHHHHHHHhc
Confidence 1123345689999999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|-+..... .+.++|.+..+. +.++++.+|+.+... .+..++.++
T Consensus 146 ------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~~tii~vsh~~~~~~-~~~d~v~~l 202 (213)
T TIGR01277 146 ------PNPILLLDEPFSALDPLLRE-----------EMLALVKQLCSERQRTLLMVTHHLSDAR-AIASQIAVV 202 (213)
T ss_pred ------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-hhcCeEEEE
Confidence 99999999998887665543 666777766543 788999999877443 344555555
No 183
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=2.7e-21 Score=186.64 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=136.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++|+++.|+++.+|+++||+| ||+||||||||||+++|+| .+.+|+|+ ++|..+ .. . . .
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~-~-~-~ 71 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK---LDGGDI----DD-P-D-V 71 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEeC----cc-h-h-h
Confidence 478999999999888999999999 9999999999999999955 46789999 778632 11 1 1 3
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+..++|++|+..+++.+ |+.+|+.+....... ..+.+.++++.+|+..
T Consensus 72 ~~~~~~~~~~~~~~~~~------tv~~~l~~~~~~~~~----~~~~~~~~l~~~~l~~---------------------- 119 (207)
T PRK13539 72 AEACHYLGHRNAMKPAL------TVAENLEFWAAFLGG----EELDIAAALEAVGLAP---------------------- 119 (207)
T ss_pred HhhcEEecCCCcCCCCC------cHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHH----------------------
Confidence 45689999998888888 999998764111010 1123455565555532
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+..+..+|+|++|++.|++++
T Consensus 120 ---------------------------------------------------------~~~~~~~~LS~G~~qrl~la~al 142 (207)
T PRK13539 120 ---------------------------------------------------------LAHLPFGYLSAGQKRRVALARLL 142 (207)
T ss_pred ---------------------------------------------------------HHcCChhhcCHHHHHHHHHHHHH
Confidence 11223346899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+. +++++|+|||..|-+..... ++.++|.+..+.+.++++.+|+.+....
T Consensus 143 ~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 143 VS------NRPIWILDEPTAALDAAAVA-----------LFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 98 99999999998886655543 6777777665568899999999875543
No 184
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.5e-21 Score=209.55 Aligned_cols=195 Identities=14% Similarity=0.125 Sum_probs=142.0
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc-ccccccc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT-KVRGRQY 152 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~-~~~~~~~ 152 (541)
++|++++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|+.+ ... .....++
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL---FQGKEI----DFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEE---ECCEEC----CCCCHHHHHhC
Confidence 368899998888999999999 9999999999999999955 46789999 888732 211 1112345
Q ss_pred cEEEEeCCCccccccccccCCCcccceecccccc-c--hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-Q--VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~--~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++||+|+..+++.+ ||.+|+.++.... . .......+++..+++.+|+.+
T Consensus 74 ~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------------------- 126 (491)
T PRK10982 74 GISMVHQELNLVLQR------SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI--------------------- 126 (491)
T ss_pred CEEEEecccccccCC------CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC---------------------
Confidence 699999999888889 9999998763211 1 112222334555555555432
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
..++.+..+|+|++|++.|+++
T Consensus 127 ----------------------------------------------------------~~~~~~~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 127 ----------------------------------------------------------DPRAKVATLSVSQMQMIEIAKA 148 (491)
T ss_pred ----------------------------------------------------------CccCchhhCCHHHHHHHHHHHH
Confidence 1233456789999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... ++.++|.+..+.+.++++.+|+.+... .++.++.++
T Consensus 149 l~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tvii~tH~~~~~~-~~~d~i~~l 207 (491)
T PRK10982 149 FSY------NAKIVIMDEPTSSLTEKEVN-----------HLFTIIRKLKERGCGIVYISHKMEEIF-QLCDEITIL 207 (491)
T ss_pred HHh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 998 99999999998886655443 666667666556889999999987543 345566555
No 185
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.3e-21 Score=192.44 Aligned_cols=206 Identities=18% Similarity=0.111 Sum_probs=144.8
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
....|.++|++++|+++.+|+++||++ ||+|||||||||||++|+|. +.+|+|. ++|..+..
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~~~~-- 91 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL---YRGIDINR-- 91 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE---ECCEEccc--
Confidence 345799999999999889999999999 99999999999999999664 3689999 88873210
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.++||+|+..+++ . |+.+|+.++....+. ........+..+++.+|+.....
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~---------- 154 (267)
T PRK14237 92 KEINVYEMRKHIGMVFQRPNPFA-K------SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK---------- 154 (267)
T ss_pred ccCChHHHhcceEEEecCCcccc-c------cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh----------
Confidence 01111223457999999987775 6 999999876211111 12233345556666666632100
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
. ..+..+..+|+|++
T Consensus 155 ----------------------------------------------------------------~-~~~~~~~~LS~G~~ 169 (267)
T PRK14237 155 ----------------------------------------------------------------D-DLHKSALTLSGGQQ 169 (267)
T ss_pred ----------------------------------------------------------------h-hhcCCcccCCHHHH
Confidence 0 11234567899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+ +.++++.+|+.+.. ..+..
T Consensus 170 qrl~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~tH~~~~~-~~~~d 230 (267)
T PRK14237 170 QRLCIARAIAV------KPDILLMDEPASALDPISTM-----------QLEETMFELKK-NYTIIIVTHNMQQA-ARASD 230 (267)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEecCHHHH-HHhcC
Confidence 99999999998 99999999998887655443 56666666643 57888999987643 23555
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 231 ~i~~l~ 236 (267)
T PRK14237 231 YTAFFY 236 (267)
T ss_pred EEEEEE
Confidence 666653
No 186
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.6e-21 Score=192.19 Aligned_cols=205 Identities=17% Similarity=0.150 Sum_probs=143.3
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|.. ..|+|. ++|..+.. .
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~---~~g~~~~~--~ 84 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN---YNGSNILK--G 84 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE---ECCEEccc--c
Confidence 35789999999999889999999999 999999999999999996532 479999 88873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++....+. ...+..+++..+++.+|+.....
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------- 146 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFP-Q------SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK----------- 146 (259)
T ss_pred ccCHHHHhhceEEEecCCcccc-c------CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-----------
Confidence 0111233457999999987764 5 899999876211111 12233344556666666532000
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+ ..+..+..+|+|++|
T Consensus 147 ---------------------------------------------------------------~-~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 147 ---------------------------------------------------------------D-RLHTQALSLSGGQQQ 162 (259)
T ss_pred ---------------------------------------------------------------h-hhhCCcccCCHHHHH
Confidence 0 112234568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+.+... .+..+
T Consensus 163 rv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiiivtH~~~~~~-~~~d~ 223 (259)
T PRK14274 163 RLCIARALAT------NPDVLLMDEPTSALDPVSTR-----------KIEELILKLKE-KYTIVIVTHNMQQAA-RVSDQ 223 (259)
T ss_pred HHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEEcCHHHHH-HhCCE
Confidence 9999999998 99999999998887765553 56666666544 678899999877443 34556
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 224 i~~l~ 228 (259)
T PRK14274 224 TAFFY 228 (259)
T ss_pred EEEEE
Confidence 65553
No 187
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3e-21 Score=189.99 Aligned_cols=195 Identities=14% Similarity=0.209 Sum_probs=141.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++++++.|++. +|+++||+| +|+|||||||||||++|+| .+..|+|+ ++|..+ .... ..+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~---i~g~~~----~~~~--~~~ 70 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL---LNGKDI----TNLP--PEK 70 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCEEc----CcCC--hhH
Confidence 4678999999865 899999999 9999999999999999954 57789999 888732 2111 123
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.++.........+..+.+..+++.+|+.+
T Consensus 71 ~~i~~~~q~~~~~~~~------t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 121 (235)
T cd03299 71 RDISYVPQNYALFPHM------TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH----------------------- 121 (235)
T ss_pred cCEEEEeecCccCCCc------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 5799999999999889 99999987632221222233334555666666532
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..++.+..+|+|++|++.|+++++
T Consensus 122 --------------------------------------------------------~~~~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 122 --------------------------------------------------------LLNRKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred --------------------------------------------------------HHhcCcccCCHHHHHHHHHHHHHH
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++++|||..|-+..+.. .+.+.|.+.... ++++++.+|+.+... .+..++.++.
T Consensus 146 ~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~~~~~~~~tili~tH~~~~~~-~~~d~i~~l~ 204 (235)
T cd03299 146 V------NPKILLLDEPFSALDVRTKE-----------KLREELKKIRKEFGVTVLHVTHDFEEAW-ALADKVAIML 204 (235)
T ss_pred c------CCCEEEECCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEEE
Confidence 8 99999999998887665553 566667665443 788999999877532 3445555553
No 188
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=9.2e-22 Score=176.11 Aligned_cols=204 Identities=13% Similarity=0.148 Sum_probs=145.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
++++++.+.-++..+|+++||.+ +|+|||||||||||+++ +..+++|.++ +.|+ .++......++
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~---f~Ge----~vs~~~pea~R 76 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL---FEGE----DVSTLKPEAYR 76 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE---EcCc----cccccChHHHH
Confidence 34556666667788999999999 99999999999999999 7788999999 9999 55555556778
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|+.|.+.||+. ||.+|+.|+-... .++....++...++.+++.+
T Consensus 77 q~VsY~~Q~paLfg~-------tVeDNlifP~~~r--~rr~dr~aa~~llar~~l~~----------------------- 124 (223)
T COG4619 77 QQVSYCAQTPALFGD-------TVEDNLIFPWQIR--NRRPDRAAALDLLARFALPD----------------------- 124 (223)
T ss_pred HHHHHHHcCcccccc-------chhhccccchHHh--ccCCChHHHHHHHHHcCCch-----------------------
Confidence 899999999999965 7999999972111 11122334445555555543
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
-+.+..+.++|||++|+.++.+.+.
T Consensus 125 -------------------------------------------------------~~L~k~it~lSGGE~QriAliR~Lq 149 (223)
T COG4619 125 -------------------------------------------------------SILTKNITELSGGEKQRIALIRNLQ 149 (223)
T ss_pred -------------------------------------------------------hhhcchhhhccchHHHHHHHHHHhh
Confidence 0223345678999999999999887
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEcCCCC
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 391 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIpvi~k 391 (541)
. -|+++++|||+...+.+|... |++.+..|+. ..++.+...+|+.|-..+-.+..+++.| |+
T Consensus 150 ~------~P~ILLLDE~TsALD~~nkr~-------ie~mi~~~v~---~q~vAv~WiTHd~dqa~rha~k~itl~~--G~ 211 (223)
T COG4619 150 F------MPKILLLDEITSALDESNKRN-------IEEMIHRYVR---EQNVAVLWITHDKDQAIRHADKVITLQP--GH 211 (223)
T ss_pred c------CCceEEecCchhhcChhhHHH-------HHHHHHHHhh---hhceEEEEEecChHHHhhhhheEEEecc--Cc
Confidence 6 799999999988777777653 3334455554 2355677788887744433444555554 45
Q ss_pred CCCC
Q psy91 392 GDSI 395 (541)
Q Consensus 392 ~D~l 395 (541)
++.+
T Consensus 212 ~~~~ 215 (223)
T COG4619 212 AGEM 215 (223)
T ss_pred cccc
Confidence 5544
No 189
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.2e-21 Score=190.33 Aligned_cols=205 Identities=16% Similarity=0.124 Sum_probs=141.7
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~ 142 (541)
+.+.|.++|+++.|+++.+|+|+||+| +|+|||||||||||++|+|. + ..|+|. ++|..+.. .
T Consensus 3 ~~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~~~~-~ 78 (253)
T PRK14261 3 MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL---YNGENIMD-S 78 (253)
T ss_pred ccceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE---ECCEEccc-c
Confidence 445789999999999889999999999 99999999999999999653 2 379999 88873211 0
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.......++.++|++|+..+++ . ||++|+.++...... ......+.+..+++.+|+...
T Consensus 79 -~~~~~~~~~~i~~~~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 138 (253)
T PRK14261 79 -GADVVALRRKIGMVFQRPNPFP-K------SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE------------ 138 (253)
T ss_pred -ccchhhhhceEEEEecCCccCc-c------cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh------------
Confidence 0011233457999999988775 6 899999876211111 112223344555555554210
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+. . ..+..+..+|+|++
T Consensus 139 ---------------------------------------------------------l~-----~-~~~~~~~~LS~G~~ 155 (253)
T PRK14261 139 ---------------------------------------------------------VK-----D-RLHDSALSLSGGQQ 155 (253)
T ss_pred ---------------------------------------------------------hH-----H-HhhcChhhCCHHHH
Confidence 00 0 11234557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|.+..... .+.+++.+..+ ++++++.+|+.+... .+..
T Consensus 156 qrv~laral~~------~p~lllLDEP~~gLD~~~~~-----------~l~~~l~~~~~-~~tvii~sh~~~~~~-~~~d 216 (253)
T PRK14261 156 QRLCIARTLAV------NPEVILMDEPCSALDPIATA-----------KIEDLIEDLKK-EYTVIIVTHNMQQAA-RVSD 216 (253)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhh-CceEEEEEcCHHHHH-hhCC
Confidence 99999999998 99999999998887665543 55566665544 478899999876543 2445
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 217 ~v~~l 221 (253)
T PRK14261 217 YTGFM 221 (253)
T ss_pred EEEEE
Confidence 55555
No 190
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.9e-21 Score=191.13 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=141.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. + .+|+|. ++|+.+.. . .
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~---~~g~~~~~-~-~ 78 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV---YNGHNIYS-P-R 78 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE---ECCEECcC-c-c
Confidence 3689999999999888999999999 99999999999999999654 3 379999 88873311 0 0
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++||+|+..+++ . |+.||+.++....+.. .....+.+..+++.+|+...
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 137 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFP-M------SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-------------- 137 (252)
T ss_pred cchHhhhhcEEEEecCCccCc-C------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh--------------
Confidence 111233457999999988876 7 9999998752111111 11223344555555554210
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.. ..++.+..+|+|++|+
T Consensus 138 -------------------------------------------------------~~~------~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 138 -------------------------------------------------------VKD------RLHDSALGLSGGQQQR 156 (252)
T ss_pred -------------------------------------------------------HHH------HHhcCcccCCHHHHHH
Confidence 000 1123455789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+++.. ..+..++
T Consensus 157 v~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sH~~~~~-~~~~d~i 217 (252)
T PRK14239 157 VCIARVLAT------SPKIILLDEPTSALDPISAG-----------KIEETLLGLKD-DYTMLLVTRSMQQA-SRISDRT 217 (252)
T ss_pred HHHHHHHhc------CCCEEEEcCCccccCHHHHH-----------HHHHHHHHHhh-CCeEEEEECCHHHH-HHhCCEE
Confidence 999999998 99999999998887655543 55566665543 57889999987633 2355666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 218 ~~l~ 221 (252)
T PRK14239 218 GFFL 221 (252)
T ss_pred EEEE
Confidence 6663
No 191
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=4.6e-21 Score=209.09 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=144.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC----CCCCeeecccCCccceeccccccc-c
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD----LYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~----~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
++++|+++.|+++.+|++|||++ +|+|||||||||||++|+|.. .+|+|. ++|+.+ ..... .
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~---~~g~~~----~~~~~~~ 74 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIY---WSGSPL----KASNIRD 74 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE---ECCEEC----CCCCHHH
Confidence 67899999999888999999999 999999999999999996642 579999 888732 21111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccccc--c--hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE--Q--VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~--~--~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
..++.+|||+|+..+++.+ |+.+|+.++.... . .......+++.++++.+|+.+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------- 132 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPEL------SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA---------------- 132 (500)
T ss_pred HHhCCEEEEeeccccCCCC------cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC----------------
Confidence 1235699999999999999 9999998762111 0 112222334555555555432
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
...++.+..+|+|++|++
T Consensus 133 --------------------------------------------------------------~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 133 --------------------------------------------------------------DNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred --------------------------------------------------------------CcccCchhhCCHHHHHHH
Confidence 111234567999999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .++.++.
T Consensus 151 ~iA~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tviiitHd~~~~~-~~~d~i~ 212 (500)
T TIGR02633 151 EIAKALNK------QARLLILDEPSSSLTEKETE-----------ILLDIIRDLKAHGVACVYISHKLNEVK-AVCDTIC 212 (500)
T ss_pred HHHHHHhh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCcHHHHH-HhCCEEE
Confidence 99999998 99999999998886655543 666777766556889999999977543 3555666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 213 ~l~ 215 (500)
T TIGR02633 213 VIR 215 (500)
T ss_pred EEe
Confidence 553
No 192
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.5e-21 Score=186.73 Aligned_cols=193 Identities=17% Similarity=0.185 Sum_probs=135.6
Q ss_pred cccccccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEE
Q psy91 84 TLPEQVHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGV 156 (541)
Q Consensus 84 ~l~~~~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~ 156 (541)
+|+++|+++.+ |+||+| +|+|||||||||||++|+| .+.+|+|. ++|..+............++.++|
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIV---LNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCeee--CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEecccccchhhhhhHhhcEEE
Confidence 88999998876 999998 9999999999999999955 56789999 888732110000011123457999
Q ss_pred EeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC
Q psy91 157 VEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG 236 (541)
Q Consensus 157 V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~ 236 (541)
++|+..+++.+ |+.+|+.++.... ......+++..+++.+|+.+
T Consensus 80 ~~q~~~~~~~~------t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~---------------------------- 123 (214)
T cd03297 80 VFQQYALFPHL------NVRENLAFGLKRK--RNREDRISVDELLDLLGLDH---------------------------- 123 (214)
T ss_pred EecCCccCCCC------CHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHh----------------------------
Confidence 99999999888 9999998752111 11122334555566555432
Q ss_pred CCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec
Q psy91 237 SIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER 316 (541)
Q Consensus 237 ~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~ 316 (541)
..+..+..+|+|++|++.|+++++.
T Consensus 124 ---------------------------------------------------~~~~~~~~LS~G~~qrv~la~al~~---- 148 (214)
T cd03297 124 ---------------------------------------------------LLNRYPAQLSGGEKQRVALARALAA---- 148 (214)
T ss_pred ---------------------------------------------------HhhcCcccCCHHHHHHHHHHHHHhc----
Confidence 1122345689999999999999998
Q ss_pred CeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 317 GVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 317 gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|-+..+.. .+.+++.+..+. +.++++.+|+.+... .+..++.++
T Consensus 149 --~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 205 (214)
T cd03297 149 --QPELLLLDEPFSALDRALRL-----------QLLPELKQIKKNLNIPVIFVTHDLSEAE-YLADRIVVM 205 (214)
T ss_pred --CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHHcCcEEEEEecCHHHHH-HhcCEEEEE
Confidence 99999999998887655543 566666666544 788999999987543 344555554
No 193
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.5e-21 Score=190.45 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=141.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++||++.|+++.+|+|+||+| +|+|||||||||||++|+|. + .+|+|. ++|..+.. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~~~~--~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL---LDGQDIYK--SDI 77 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE---ECCEEccc--ccc
Confidence 578999999999888999999999 99999999999999999763 2 479999 88873211 001
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....+..++|++|+..+++ . |+.+|+.++....+. ......+.+..++..+++...
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~------t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------- 135 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-M------SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE--------------- 135 (250)
T ss_pred chHHHhccEEEEecCCccCc-c------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh---------------
Confidence 11233457999999988877 7 999999876211111 112233445555555554210
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+. . ..+..+..+|+|++|++
T Consensus 136 ------------------------------------------------------l~-----~-~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 136 ------------------------------------------------------VK-----D-RLKKSALGLSGGQQQRL 155 (250)
T ss_pred ------------------------------------------------------hH-----H-HHhcCCCCCCHHHHHHH
Confidence 00 0 11234557899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+.+... .+..++.
T Consensus 156 ~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~~-~~~d~v~ 216 (250)
T PRK14240 156 CIARALAV------EPEVLLMDEPTSALDPISTL-----------KIEELIQELKK-DYTIVIVTHNMQQAS-RISDKTA 216 (250)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEEeCHHHHH-hhCCEEE
Confidence 99999999 99999999998887655543 56666666543 678999999877432 3455665
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 217 ~l~ 219 (250)
T PRK14240 217 FFL 219 (250)
T ss_pred EEE
Confidence 553
No 194
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.83 E-value=3.5e-21 Score=187.89 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=138.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++++++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ... . .
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~~~~~----~~~---~-~ 69 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII---FDGHPW----TRK---D-L 69 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEec----ccc---c-c
Confidence 46889999998888999999999 9999999999999999965 56789999 777622 111 1 2
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+....... ....+..+++.+|+.+
T Consensus 70 ~~~~~~~q~~~~~~~~------t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~----------------------- 116 (223)
T TIGR03740 70 HKIGSLIESPPLYENL------TARENLKVHTTLLGL----PDSRIDEVLNIVDLTN----------------------- 116 (223)
T ss_pred ccEEEEcCCCCccccC------CHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcH-----------------------
Confidence 4689999999888888 999998765211111 1123445555555542
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.+..+..+|+|++|++.|+++++
T Consensus 117 --------------------------------------------------------~~~~~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 117 --------------------------------------------------------TGKKKAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred --------------------------------------------------------HHhhhHhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++++|||..|-+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 141 ~------~p~llllDEP~~~LD~~~~~-----------~l~~~L~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 197 (223)
T TIGR03740 141 N------HPKLLILDEPTNGLDPIGIQ-----------ELRELIRSFPEQGITVILSSHILSEVQ-QLADHIGII 197 (223)
T ss_pred c------CCCEEEECCCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-HhcCEEEEE
Confidence 8 99999999998887665543 677777776556788999999877432 244444444
No 195
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.3e-21 Score=189.52 Aligned_cols=204 Identities=16% Similarity=0.112 Sum_probs=141.3
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC--C-----CCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD--L-----YGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~--~-----~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|++++|+++.+|+++||+| +|+|||||||||||++|+|.. . .|+|. ++|..+.. .
T Consensus 2 ~~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~---~~g~~~~~-~- 76 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVL---LDNENIYS-P- 76 (251)
T ss_pred CceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEE---ECCEEccc-c-
Confidence 45689999999999888999999999 999999999999999996643 2 48999 77873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++||+|+..+++ . |+.||+.++....+.. .....+.+..++..+|+...
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------- 136 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFP-K------SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE------------- 136 (251)
T ss_pred ccChHHhhceEEEEecCCccCc-C------cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------------
Confidence 1111233567999999988775 6 8999998763211111 11222344445555554310
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
++. +.++.+..+|+|++|
T Consensus 137 --------------------------------------------------------l~~------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 137 --------------------------------------------------------VKD------NLHKSGLALSGGQQQ 154 (251)
T ss_pred --------------------------------------------------------hhh------HhhCCcccCCHHHHH
Confidence 000 113345679999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+.. .+.++++.+|+++... .+..+
T Consensus 155 rv~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~-~~~tilivsh~~~~~~-~~~d~ 215 (251)
T PRK14249 155 RLCIARVLAI------EPEVILMDEPCSALDPVSTM-----------RIEELMQELK-QNYTIAIVTHNMQQAA-RASDW 215 (251)
T ss_pred HHHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHh-cCCEEEEEeCCHHHHH-hhCCE
Confidence 9999999998 99999999998887665543 5556666553 3678999999877543 34556
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 216 i~~l 219 (251)
T PRK14249 216 TGFL 219 (251)
T ss_pred EEEE
Confidence 6555
No 196
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.82 E-value=7.6e-21 Score=189.00 Aligned_cols=201 Identities=16% Similarity=0.190 Sum_probs=138.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+++|++.|+++.+|++|||++ ||+|||||||||||++|+|. +..|+|+ ++|..+ .....
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~---~~g~~~----~~~~~ 78 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDIL---FKGESI----LDLEP 78 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEE---ECCEEc----ccCCh
Confidence 3589999999998888999999999 99999999999999999773 6789999 888732 21111
Q ss_pred cccc-ccEEEEeCCCccccccccccCCCcccceeccccccc-------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 148 RGRQ-YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 148 ~~~~-~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
..+. ..++|++|+..+++.+ ++.+++.+...... ....+....+..+++.+|+..
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------- 141 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGV------SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------- 141 (252)
T ss_pred hhhheeeEEEEeccccccccc------cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-----------
Confidence 1222 2478999999998888 88888765411100 000111122333343333320
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC-CCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP-NVND 298 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~-~ls~ 298 (541)
...+..+. .+|+
T Consensus 142 -------------------------------------------------------------------~~~~~~~~~~LSg 154 (252)
T CHL00131 142 -------------------------------------------------------------------SFLSRNVNEGFSG 154 (252)
T ss_pred -------------------------------------------------------------------hhhccccccCCCH
Confidence 01122333 4899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhc
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERG 378 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~ 378 (541)
|++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+.++++++.+|+.+....-
T Consensus 155 G~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tii~~tH~~~~~~~~ 217 (252)
T CHL00131 155 GEKKRNEILQMALL------DSELAILDETDSGLDIDALK-----------IIAEGINKLMTSENSIILITHYQRLLDYI 217 (252)
T ss_pred HHHHHHHHHHHHHc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCHHHHHhh
Confidence 99999999999998 99999999998887655543 56667776655578999999987765432
Q ss_pred ccceeEEE
Q psy91 379 VKLRLTVV 386 (541)
Q Consensus 379 l~~rvnvI 386 (541)
...++.++
T Consensus 218 ~~d~i~~l 225 (252)
T CHL00131 218 KPDYVHVM 225 (252)
T ss_pred hCCEEEEE
Confidence 24566555
No 197
>KOG0058|consensus
Probab=99.82 E-value=4.2e-21 Score=206.51 Aligned_cols=195 Identities=21% Similarity=0.284 Sum_probs=134.3
Q ss_pred CCCCceeeeccccccccc---ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc
Q psy91 75 TDRDYIGFATLPEQVHRK---SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~---~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
...+.|+|+||+|.|+.+ +||+|+||+| |||||||+||||+.++| +..|.+|+|. ++|.++ .
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il---lDG~~i----~ 533 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL---LDGVPI----S 533 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE---ECCeeh----h
Confidence 466789999999999876 4999999999 99999999999999999 7889999999 899833 3
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......+++++|+|.|++.||. + |++|||.|+.. ..+.++....+ +..+-.+ -+..+
T Consensus 534 ~~~~~~lr~~Ig~V~QEPvLFs---~----sI~eNI~YG~~--~~t~e~i~~AA----k~ANah~--------FI~~~-- 590 (716)
T KOG0058|consen 534 DINHKYLRRKIGLVGQEPVLFS---G----SIRENIAYGLD--NATDEEIEAAA----KMANAHE--------FITNF-- 590 (716)
T ss_pred hcCHHHHHHHeeeeeccceeec---c----cHHHHHhcCCC--CCCHHHHHHHH----HHhChHH--------HHHhC--
Confidence 3333455678999999999994 3 89999999943 33333332221 1111110 00000
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
++ ||.+ +||+.| ..+||||+||
T Consensus 591 p~------------------gY~T-------------------~VGEkG---------------------~qLSGGQKQR 612 (716)
T KOG0058|consen 591 PD------------------GYNT-------------------VVGEKG---------------------SQLSGGQKQR 612 (716)
T ss_pred cc------------------cccc-------------------ccCCcc---------------------ccccchHHHH
Confidence 00 0100 234444 3589999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
++|||+++. +|+++|+||.+.-.+..++. ...+.|.. ...+||+++..|.+.-.
T Consensus 613 IAIARALlr------~P~VLILDEATSALDaeSE~-----------lVq~aL~~-~~~~rTVlvIAHRLSTV 666 (716)
T KOG0058|consen 613 IAIARALLR------NPRVLILDEATSALDAESEY-----------LVQEALDR-LMQGRTVLVIAHRLSTV 666 (716)
T ss_pred HHHHHHHhc------CCCEEEEechhhhcchhhHH-----------HHHHHHHH-hhcCCeEEEEehhhhHh
Confidence 999999999 99999999996654444442 22222222 22358988888775533
No 198
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.82 E-value=6.4e-21 Score=202.16 Aligned_cols=203 Identities=20% Similarity=0.221 Sum_probs=154.0
Q ss_pred CCCceeeecccccccc-----------cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCc
Q psy91 76 DRDYIGFATLPEQVHR-----------KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-----------~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~ 136 (541)
..+.+.++||++.|.. ..+++||||++ ||||+||||||||.++| +..|.+|.|. +.|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~---~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII---FDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---EeCc
Confidence 5578899999999973 25899999999 99999999999999999 4467889999 8887
Q ss_pred cceecccccccccccccEEEEeCCC--ccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchh
Q psy91 137 NTVIEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKST 213 (541)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~ 213 (541)
++ .......+..++.+-+|||++ .|.|.+ ||.+.+..+.. .......+..+++.++++.+||..
T Consensus 354 ~~--~~~~~~~~~~r~~~QmvFQdp~~SLnPr~------tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~----- 420 (539)
T COG1123 354 DL--DLTGGELRRLRRRIQMVFQDPYSSLNPRM------TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP----- 420 (539)
T ss_pred cc--ccccchhhhhhhheEEEEeCcccccCccc------cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH-----
Confidence 41 222222334455778888874 789999 99988876622 122234556667899999999861
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
-+.++++
T Consensus 421 -------------------------------------------------------------------------~~l~ryP 427 (539)
T COG1123 421 -------------------------------------------------------------------------EFLDRYP 427 (539)
T ss_pred -------------------------------------------------------------------------HHHhcCc
Confidence 0234568
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeecccc
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKS 371 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~ 371 (541)
..+||||+||++|+++++. +|+++|+||| +..|..... ++.+.|.+.++ .+-+.++.+|+
T Consensus 428 ~elSGGQrQRvaIARALa~------~P~lli~DEp~SaLDvsvqa------------~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 428 HELSGGQRQRVAIARALAL------EPKLLILDEPVSALDVSVQA------------QVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred hhcCcchhHHHHHHHHHhc------CCCEEEecCCccccCHHHHH------------HHHHHHHHHHHHhCCEEEEEeCC
Confidence 8899999999999999998 9999999999 555543332 77777777765 48899999999
Q ss_pred chhhhhcccceeEEE
Q psy91 372 MDIEERGVKLRLTVV 386 (541)
Q Consensus 372 ~di~~~~l~~rvnvI 386 (541)
+++.. .++.++.+.
T Consensus 490 l~vV~-~i~drv~vm 503 (539)
T COG1123 490 LAVVR-YIADRVAVM 503 (539)
T ss_pred HHHHH-hhCceEEEE
Confidence 98765 367777665
No 199
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.9e-21 Score=214.34 Aligned_cols=205 Identities=19% Similarity=0.142 Sum_probs=148.9
Q ss_pred CCceeeecccccccc-----------cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcc
Q psy91 77 RDYIGFATLPEQVHR-----------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSN 137 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~-----------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~ 137 (541)
.+.++++||++.|+. ..+|++|||+| ||+||||||||||+++|+| .+..|+|+ ++|+.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~---~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII---FNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEE---ECCEE
Confidence 357999999999962 46999999999 9999999999999999955 57889999 88873
Q ss_pred ceecccccccccccccEEEEeCCC--ccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhh
Q psy91 138 TVIEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTL 214 (541)
Q Consensus 138 ~~~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l 214 (541)
+.. ......+.+++.++||+|+. .+++.+ ||.+++.++...... ...+..+++.++++.+|+..
T Consensus 388 i~~-~~~~~~~~~~~~i~~v~Q~~~~~l~~~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~------ 454 (623)
T PRK10261 388 IDT-LSPGKLQALRRDIQFIFQDPYASLDPRQ------TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP------ 454 (623)
T ss_pred CCc-CCHHHHHHhcCCeEEEecCchhhcCCCC------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH------
Confidence 321 11111122345799999996 588888 999998765211111 12233445666666666631
Q ss_pred hhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC
Q psy91 215 VNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 294 (541)
Q Consensus 215 ~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~ 294 (541)
...++.+.
T Consensus 455 ------------------------------------------------------------------------~~~~~~~~ 462 (623)
T PRK10261 455 ------------------------------------------------------------------------EHAWRYPH 462 (623)
T ss_pred ------------------------------------------------------------------------HHhhCCcc
Confidence 01234567
Q ss_pred CCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccch
Q psy91 295 NVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMD 373 (541)
Q Consensus 295 ~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~d 373 (541)
.+|+|++|++.|+++++. +++|+|+|||..|.+..... ++.+.|.+..+. +.++++.+|+++
T Consensus 463 ~LSgGqrQRv~iAraL~~------~p~llllDEPts~LD~~~~~-----------~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 463 EFSGGQRQRICIARALAL------NPKVIIADEAVSALDVSIRG-----------QIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred cCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 799999999999999998 99999999998886655543 777777776554 789999999987
Q ss_pred hhhhcccceeEEEc
Q psy91 374 IEERGVKLRLTVVD 387 (541)
Q Consensus 374 i~~~~l~~rvnvIp 387 (541)
... .++.++.++.
T Consensus 526 ~v~-~~~dri~vl~ 538 (623)
T PRK10261 526 VVE-RISHRVAVMY 538 (623)
T ss_pred HHH-HhCCEEEEEE
Confidence 553 4666776663
No 200
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.82 E-value=4.9e-21 Score=186.45 Aligned_cols=200 Identities=17% Similarity=0.151 Sum_probs=139.1
Q ss_pred ceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.++++++++.|++ +.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ ......
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL---LDGTDI----RQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEE---ECCEEh----HHCCHH
Confidence 3688999999975 56999999999 9999999999999999955 46789999 888732 111111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++|++|+..+++ . |+.||+.+..... ....+..+++.+|+.+..+.. ..++.
T Consensus 75 ~~~~~i~~~~q~~~~~~-~------tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~----~~~~~------ 131 (220)
T cd03245 75 DLRRNIGYVPQDVTLFY-G------TLRDNITLGAPLA------DDERILRAAELAGVTDFVNKH----PNGLD------ 131 (220)
T ss_pred HHHhhEEEeCCCCcccc-c------hHHHHhhcCCCCC------CHHHHHHHHHHcCcHHHHHhc----ccccc------
Confidence 23457999999987765 6 8999987752111 112344556666654311110 00000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
. .....+..+|+|++|++.|++
T Consensus 132 --------------------------------------------------------~--~~~~~~~~LSgG~~qrl~la~ 153 (220)
T cd03245 132 --------------------------------------------------------L--QIGERGRGLSGGQRQAVALAR 153 (220)
T ss_pred --------------------------------------------------------c--eecCCCccCCHHHHHHHHHHH
Confidence 0 011234579999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|-+..... .+.+.|.+..+. .++++.+|+.++. .+..++.++
T Consensus 154 al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~-~tii~~sH~~~~~--~~~d~v~~l 211 (220)
T cd03245 154 ALLN------DPPILLLDEPTSAMDMNSEE-----------RLKERLRQLLGD-KTLIIITHRPSLL--DLVDRIIVM 211 (220)
T ss_pred HHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhcCC-CEEEEEeCCHHHH--HhCCEEEEE
Confidence 9998 99999999998887766553 566666665543 7889999998864 366676665
No 201
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.82 E-value=5.4e-21 Score=187.00 Aligned_cols=196 Identities=15% Similarity=0.188 Sum_probs=135.5
Q ss_pred ceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--C---CCCCCeeecccCCccceeccc
Q psy91 79 YIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--S---DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 79 ~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~---~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.++|+++.|++ +.+|+++||+| +|+||||||||||+++|++ . +.+|+|. ++|..+ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~---~~g~~~----~ 75 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL---FNGQPR----K 75 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEE---ECCEEC----C
Confidence 4568889999964 57999999999 9999999999999999955 3 5789999 888722 2
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccc---hhhHhHhhhHHH-HHHHhCCCCccchhhhhhhc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ---VHRKSVKKGFDF-TLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~---~~~~e~~~~v~~-~L~~vGL~g~~ks~l~~~l~ 219 (541)
. ...++.++|++|+..+++.+ |+.||+.++..... .........+.. .+.
T Consensus 76 ~---~~~~~~i~~~~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------- 129 (226)
T cd03234 76 P---DQFQKCVAYVRQDDILLPGL------TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR----------------- 129 (226)
T ss_pred h---HHhcccEEEeCCCCccCcCC------cHHHHHHHHHHhhcccccchHHHHHHHHHHHHH-----------------
Confidence 1 13456799999999999999 99999987521100 000000011111 121
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
.+.... +.++.+..+|+|
T Consensus 130 -------------------------------------------------------------~~~l~~-~~~~~~~~LS~G 147 (226)
T cd03234 130 -------------------------------------------------------------DLALTR-IGGNLVKGISGG 147 (226)
T ss_pred -------------------------------------------------------------hhcchh-hhcccccCcCHH
Confidence 111111 223456679999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcc
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l 379 (541)
++|++.|+++++. +++++|+|||..|-+..... .+.+.+.+..+.+.++++.+|+...+...+
T Consensus 148 ~~qrl~laral~~------~p~illlDEP~~gLD~~~~~-----------~~~~~l~~~~~~~~tiii~sh~~~~~~~~~ 210 (226)
T cd03234 148 ERRRVSIAVQLLW------DPKVLILDEPTSGLDSFTAL-----------NLVSTLSQLARRNRIVILTIHQPRSDLFRL 210 (226)
T ss_pred HHHHHHHHHHHHh------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCCCHHHHHh
Confidence 9999999999998 99999999998887655543 666667666555789999999873222234
Q ss_pred cceeEEE
Q psy91 380 KLRLTVV 386 (541)
Q Consensus 380 ~~rvnvI 386 (541)
+.++.++
T Consensus 211 ~d~i~~l 217 (226)
T cd03234 211 FDRILLL 217 (226)
T ss_pred CCEEEEE
Confidence 5555554
No 202
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=6e-21 Score=187.61 Aligned_cols=198 Identities=16% Similarity=0.184 Sum_probs=136.7
Q ss_pred eeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
|.++|+++.|+++ .+|+++||++ +|+|||||||||||++|+| .+.+|+|+ ++|..+ .......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL---IDGHDV----RDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEE---ECCEEh----hhCCHHH
Confidence 4688999999765 7999999999 9999999999999999955 47789999 888732 1111122
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++ . |+.||+.+..... .. ..+...+...++..
T Consensus 74 ~~~~i~~~~q~~~~~~-~------tv~enl~~~~~~~--~~----~~~~~~~~~~~~~~--------------------- 119 (234)
T cd03251 74 LRRQIGLVSQDVFLFN-D------TVAENIAYGRPGA--TR----EEVEEAARAANAHE--------------------- 119 (234)
T ss_pred HHhhEEEeCCCCeecc-c------cHHHHhhccCCCC--CH----HHHHHHHHHcCcHH---------------------
Confidence 3457999999987764 6 9999998763211 11 11222222222211
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcceEEe
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+++.+ .... ..+..+..+|+|++|++.|+
T Consensus 120 ------------------------------------------------~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~la 150 (234)
T cd03251 120 ------------------------------------------------FIMELPEGYDT-VIGERGVKLSGGQRQRIAIA 150 (234)
T ss_pred ------------------------------------------------HHHhcccCcce-eeccCCCcCCHHHHHHHHHH
Confidence 11111 0011 12334667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+.+.... ..++.++.
T Consensus 151 ~al~~------~p~lllLDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~v~~l~ 210 (234)
T cd03251 151 RALLK------DPPILILDEATSALDTESER-----------LVQAALERLMK-NRTTFVIAHRLSTIEN--ADRIVVLE 210 (234)
T ss_pred HHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEecCHHHHhh--CCEEEEec
Confidence 99999 99999999998887766553 56666666644 7889999999876543 66666653
No 203
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.8e-21 Score=191.16 Aligned_cols=206 Identities=16% Similarity=0.103 Sum_probs=140.2
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
..+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|+.+..
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~i~~-- 92 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEIL---YEGLNILD-- 92 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEE---ECCEEccc--
Confidence 345689999999999889999999999 99999999999999999663 4689999 88873211
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
........++.++|++|+..+++ . |+.+|+.++...... ......+.+..++..+|+...
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 153 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFP-K------SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE------------ 153 (268)
T ss_pred ccccHHHHhccEEEEecCCccCc-c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc------------
Confidence 01111223457999999987765 5 899998765211111 111112233444444443210
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+. . ..+..+..+|+|++
T Consensus 154 ---------------------------------------------------------~~-----~-~~~~~~~~LSgGq~ 170 (268)
T PRK14248 154 ---------------------------------------------------------VK-----D-RLHSSALSLSGGQQ 170 (268)
T ss_pred ---------------------------------------------------------hH-----H-HHhcCcccCCHHHH
Confidence 00 0 11234567999999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ +.++++.+|+.+... .++.
T Consensus 171 qrl~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~tH~~~~~~-~~~d 231 (268)
T PRK14248 171 QRLCIARTLAM------KPAVLLLDEPASALDPISNA-----------KIEELITELKE-EYSIIIVTHNMQQAL-RVSD 231 (268)
T ss_pred HHHHHHHHHhC------CCCEEEEcCCCcccCHHHHH-----------HHHHHHHHHhc-CCEEEEEEeCHHHHH-HhCC
Confidence 99999999998 99999999998887655543 55566665543 578889999977432 3455
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 232 ~v~~l~ 237 (268)
T PRK14248 232 RTAFFL 237 (268)
T ss_pred EEEEEE
Confidence 666653
No 204
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.2e-21 Score=189.47 Aligned_cols=204 Identities=16% Similarity=0.117 Sum_probs=141.9
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. + ..|+|. ++|..+.. . .
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~---~~g~~~~~-~-~ 76 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR---IDGRNIYD-K-G 76 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEE---ECCEeccc-c-c
Confidence 3578999999999888999999999 99999999999999999652 2 379999 88873211 0 0
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++ . |+.+|+.++....... .....+.+..+++.+|+...-.
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------ 137 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-K------SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK------------ 137 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-c------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh------------
Confidence 111233457999999987775 6 8999998752111111 1222344556666666532000
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. ..+..+..+|+|++|+
T Consensus 138 --------------------------------------------------------------~-~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 138 --------------------------------------------------------------D-KLKESAFALSGGQQQR 154 (250)
T ss_pred --------------------------------------------------------------h-hhhCCcccCCHHHHHH
Confidence 0 1123355689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.++|.+.. .++++++.+|+.+... ++..++
T Consensus 155 v~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~-~~~tiiivtH~~~~~~-~~~d~v 215 (250)
T PRK14245 155 LCIARAMAV------SPSVLLMDEPASALDPISTA-----------KVEELIHELK-KDYTIVIVTHNMQQAA-RVSDKT 215 (250)
T ss_pred HHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHh-cCCeEEEEeCCHHHHH-hhCCEE
Confidence 999999998 99999999998887665543 5666666653 3678899999877433 355566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 216 ~~l~ 219 (250)
T PRK14245 216 AFFY 219 (250)
T ss_pred EEEE
Confidence 6553
No 205
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.4e-21 Score=189.77 Aligned_cols=201 Identities=15% Similarity=0.180 Sum_probs=141.2
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|. ++|..+. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~---~~g~~~~---~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLT---MDGEDIY---GNI 76 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEE---ECCEEcc---ccc
Confidence 578999999999889999999999 999999999999999996542 479999 8887321 011
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|+..+++ . |+.+|+.++...... ......+++..+++.+|+.....
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------- 136 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-M------SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK------------- 136 (249)
T ss_pred chHHHHhheeEEecCCCcCc-c------cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------------
Confidence 12233457999999988886 7 999999876211111 11222334555565555532000
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ ..+..+..+|+|++|++
T Consensus 137 -------------------------------------------------------------~-~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 137 -------------------------------------------------------------D-RLKSHAFGLSGGQQQRL 154 (249)
T ss_pred -------------------------------------------------------------H-HhhcCcccCCHHHHHHH
Confidence 0 11233557899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+.+.. ..+..++.
T Consensus 155 ~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~-~~~~d~i~ 215 (249)
T PRK14253 155 CIARTIAM------EPDVILMDEPTSALDPIATH-----------KIEELMEELKK-NYTIVIVTHSMQQA-RRISDRTA 215 (249)
T ss_pred HHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEecCHHHH-HHhCCEEE
Confidence 99999998 99999999998887655443 66667776654 47889999987743 33555666
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 216 ~l 217 (249)
T PRK14253 216 FF 217 (249)
T ss_pred EE
Confidence 55
No 206
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.82 E-value=6.1e-21 Score=187.86 Aligned_cols=189 Identities=21% Similarity=0.225 Sum_probs=132.1
Q ss_pred ccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEe
Q psy91 87 EQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 87 ~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
+.|+.+++|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .... ...++.++|++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~~----~~~~-~~~~~~i~~~~ 100 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR---VAGLVP----WKRR-KKFLRRIGVVF 100 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCEEc----cccc-hhhcccEEEEc
Confidence 5677788999999999 9999999999999999965 47789999 777622 1111 23345789998
Q ss_pred -CCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCC
Q psy91 159 -GSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGS 237 (541)
Q Consensus 159 -Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~ 237 (541)
|...+++.+ |+.+|+.+.....+....+..+.+..+++.+|+..
T Consensus 101 ~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------------------------- 145 (236)
T cd03267 101 GQKTQLWWDL------PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEE----------------------------- 145 (236)
T ss_pred CCccccCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------------
Confidence 556777888 99999876521111222223334445555555432
Q ss_pred CCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecC
Q psy91 238 IPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERG 317 (541)
Q Consensus 238 ~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~g 317 (541)
..+..+..+|+|++|++.|+++++.
T Consensus 146 --------------------------------------------------~~~~~~~~LS~G~~qrl~la~al~~----- 170 (236)
T cd03267 146 --------------------------------------------------LLDTPVRQLSLGQRMRAEIAAALLH----- 170 (236)
T ss_pred --------------------------------------------------HhcCChhhCCHHHHHHHHHHHHHhc-----
Confidence 1122345689999999999999998
Q ss_pred eeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEE
Q psy91 318 VKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 318 v~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|.+..... .+.++|.+..+ .++++++.+|+.+... .+..++.++
T Consensus 171 -~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiiivsH~~~~~~-~~~d~i~~l 227 (236)
T cd03267 171 -EPEILFLDEPTIGLDVVAQE-----------NIRNFLKEYNRERGTTVLLTSHYMKDIE-ALARRVLVI 227 (236)
T ss_pred -CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHhcCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99999999998887665543 66777776654 3788999999987432 344454444
No 207
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.8e-21 Score=191.51 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=139.8
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.|.+++|++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+.. ..
T Consensus 37 ~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~---i~G~~i~~-~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT---FRGKNVYD-AD 112 (285)
T ss_pred CceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEE---ECCEEccc-cc
Confidence 45689999999999888999999999 99999999999999999664 4689999 88873211 01
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++||+|+..+++ . |+.+|+.+.....+... ...+.+..+++.+|+....
T Consensus 113 -~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i------------- 170 (285)
T PRK14254 113 -VDPVALRRRIGMVFQKPNPFP-K------SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEV------------- 170 (285)
T ss_pred -cchHhhhccEEEEecCCccCc-C------CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchh-------------
Confidence 111223457999999987665 5 89999876521111111 2233455666666653200
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. + ..+..+..+|+|++|+
T Consensus 171 --------------------------------------------------------~-----~-~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 171 --------------------------------------------------------K-----D-QLDSSGLDLSGGQQQR 188 (285)
T ss_pred --------------------------------------------------------H-----H-HHhCCcccCCHHHHHH
Confidence 0 0 1123456799999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|.+..... .+.++|.+..+ ++++++.+|+.+... .+..++
T Consensus 189 v~LAraL~~------~p~lLLLDEPts~LD~~~~~-----------~l~~~L~~~~~-~~tiii~tH~~~~i~-~~~dri 249 (285)
T PRK14254 189 LCIARAIAP------DPEVILMDEPASALDPVATS-----------KIEDLIEELAE-EYTVVIVTHNMQQAA-RISDKT 249 (285)
T ss_pred HHHHHHHHc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-hhcCEE
Confidence 999999998 99999999998887665543 55566665544 368889999877543 244553
No 208
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.1e-21 Score=192.67 Aligned_cols=206 Identities=14% Similarity=0.089 Sum_probs=142.5
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
..+.+.++++++.|+++.+|+|+||+| +|+|||||||||||++|+|. +..|+|. ++|..+.. .
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~---~~g~~i~~-~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM---FDGEDIYG-K 111 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEE---ECCEEhhh-c
Confidence 345789999999998888999999999 99999999999999999763 3789999 88873211 0
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
......+++.++||+|+..+++ . |+.||+.++...... ......+.+..+++.+|+...
T Consensus 112 -~~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------ 171 (286)
T PRK14275 112 -FTDEVLLRKKIGMVFQKPNPFP-K------SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE------------ 171 (286)
T ss_pred -ccchHHhhhcEEEECCCCCCCc-c------CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc------------
Confidence 0111123557999999987765 5 899999876211111 112223345555665554310
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
+ .+ ..+..+..+|+|++
T Consensus 172 ---------------------------------------------------------l-----~~-~~~~~~~~LSgGq~ 188 (286)
T PRK14275 172 ---------------------------------------------------------V-----SD-RLDKNALGLSGGQQ 188 (286)
T ss_pred ---------------------------------------------------------h-----hh-HhhCChhhCCHHHH
Confidence 0 00 11234567899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+ ++++++.+|+.+... .+..
T Consensus 189 qrv~LAraL~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~L~~~~~-~~tvIivsH~~~~~~-~~~d 249 (286)
T PRK14275 189 QRLCVARTLAV------EPEILLLDEPTSALDPKATA-----------KIEDLIQELRG-SYTIMIVTHNMQQAS-RVSD 249 (286)
T ss_pred HHHHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-HhCC
Confidence 99999999999 99999999998887665543 55566665544 478899999877543 3455
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 250 ~i~~L~ 255 (286)
T PRK14275 250 YTMFFY 255 (286)
T ss_pred EEEEEE
Confidence 555553
No 209
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.8e-21 Score=189.46 Aligned_cols=208 Identities=18% Similarity=0.148 Sum_probs=146.7
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccc--cc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVA--GT 145 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~--~~ 145 (541)
..+.+.+++++++|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|++.....+ ..
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~---~~G~~~~~g~~~~~~ 83 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIK---VDGKVLYFGKDIFQI 83 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCcee---EcCEEEECCcccccC
Confidence 346799999999999999999999999 9999999999999999955 45688888 77763321111 11
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....+..++|++|+..+++.+ |+.+|+.++...... ...+..+++..+++.+|+.....
T Consensus 84 ~~~~~~~~i~~~~q~~~~~~~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------- 144 (257)
T PRK14246 84 DAIKLRKEVGMVFQQPNPFPHL------SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY------------- 144 (257)
T ss_pred CHHHHhcceEEEccCCccCCCC------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------------
Confidence 1122345799999999999888 999999876211111 22333455666777766643100
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ ..+..+..+|+|++|++
T Consensus 145 -------------------------------------------------------------~-~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 145 -------------------------------------------------------------D-RLNSPASQLSGGQQQRL 162 (257)
T ss_pred -------------------------------------------------------------h-hhcCCcccCCHHHHHHH
Confidence 0 01123456899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
+|+++++. +|+++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+... +++.++.
T Consensus 163 ~laral~~------~P~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiilvsh~~~~~~-~~~d~v~ 223 (257)
T PRK14246 163 TIARALAL------KPKVLLMDEPTSMIDIVNSQ-----------AIEKLITELKN-EIAIVIVSHNPQQVA-RVADYVA 223 (257)
T ss_pred HHHHHHHc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CcEEEEEECCHHHHH-HhCCEEE
Confidence 99999999 99999999998887665543 56666665543 578999999977443 3445555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 224 ~l 225 (257)
T PRK14246 224 FL 225 (257)
T ss_pred EE
Confidence 55
No 210
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7e-21 Score=189.17 Aligned_cols=204 Identities=14% Similarity=0.139 Sum_probs=140.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++|++++|+.+.+|+++||+| +|+|||||||||||++|+|.. ..|+|. ++|..+.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~---i~g~~~~~--~~ 77 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIK---FEGQNIYG--SK 77 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEE---ECCEEccc--cc
Confidence 4689999999999889999999999 999999999999999996642 589999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++ . |+.+|+.++....+.. .....+.+..+++.+|+....
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------- 137 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFP-F------SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET------------- 137 (251)
T ss_pred chHHHhhccEEEEecCCccCC-C------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------------
Confidence 111233457999999988774 6 9999998752111111 111223445555555553100
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
. ...+..+..+|+|++|+
T Consensus 138 -------------------------------------------------------------~-~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 138 -------------------------------------------------------------K-DNLDRNAQAFSGGQQQR 155 (251)
T ss_pred -------------------------------------------------------------H-HHhccChhhCCHHHHHH
Confidence 0 01123455789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+... .+..++
T Consensus 156 ~~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiiiisH~~~~~~-~~~d~i 216 (251)
T PRK14251 156 ICIARALAV------RPKVVLLDEPTSALDPISSS-----------EIEETLMELKH-QYTFIMVTHNLQQAG-RISDQT 216 (251)
T ss_pred HHHHHHHhc------CCCEEEecCCCccCCHHHHH-----------HHHHHHHHHHc-CCeEEEEECCHHHHH-hhcCEE
Confidence 999999998 99999999998876655443 55566665533 578899999877432 244555
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 217 ~~l~ 220 (251)
T PRK14251 217 AFLM 220 (251)
T ss_pred EEEE
Confidence 5553
No 211
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.82 E-value=8e-21 Score=189.56 Aligned_cols=205 Identities=18% Similarity=0.208 Sum_probs=137.7
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcccee-ccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVI-EVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~-~~~~~~~ 147 (541)
.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..... .+.....
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~~~~~i~~~~~ 80 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH---YRMRDGQLRDLYALSE 80 (258)
T ss_pred CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCccccccccccCCH
Confidence 34689999999998888999999999 9999999999999999955 47789999 77763000 0111111
Q ss_pred c----cccccEEEEeCCCc--cccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 148 R----GRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 148 ~----~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
. .+++.++||+|+.. +++.+ ++.+|+.+...... .........+.++++.+|+..
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------ 142 (258)
T PRK11701 81 AERRRLLRTEWGFVHQHPRDGLRMQV------SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA------------ 142 (258)
T ss_pred HHHHHHhhcceEEEeeCcccccCccc------cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh------------
Confidence 1 12456999999963 55666 77777754310000 011122233444444444321
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
...+..+..+|+|+
T Consensus 143 ------------------------------------------------------------------~~~~~~~~~LS~Gq 156 (258)
T PRK11701 143 ------------------------------------------------------------------ARIDDLPTTFSGGM 156 (258)
T ss_pred ------------------------------------------------------------------hHHhCCCccCCHHH
Confidence 01123456789999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l 379 (541)
+|++.|+++++. +++++|+|||..|.+..... .+.+++.+..+. +.++++.+|+.+.... +
T Consensus 157 ~qrl~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~isH~~~~~~~-~ 218 (258)
T PRK11701 157 QQRLQIARNLVT------HPRLVFMDEPTGGLDVSVQA-----------RLLDLLRGLVRELGLAVVIVTHDLAVARL-L 218 (258)
T ss_pred HHHHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHhcCcEEEEEeCCHHHHHH-h
Confidence 999999999998 99999999998887655543 556666655443 7889999999876542 3
Q ss_pred cceeEEE
Q psy91 380 KLRLTVV 386 (541)
Q Consensus 380 ~~rvnvI 386 (541)
..++.++
T Consensus 219 ~d~i~~l 225 (258)
T PRK11701 219 AHRLLVM 225 (258)
T ss_pred cCEEEEE
Confidence 4455544
No 212
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=6e-21 Score=186.95 Aligned_cols=198 Identities=17% Similarity=0.208 Sum_probs=136.9
Q ss_pred ceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.++++|+++.|++ +.+|+++||++ +|+|||||||||||++|+| .+..|+|. ++|..+ .......
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL---IDGIDI----RDISRKS 74 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE---ECCEeH----HHcCHHH
Confidence 4789999999975 57999999999 9999999999999999955 46789999 888622 2111223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++ . |+.+|+.+..... ....+..++..+++...
T Consensus 75 ~~~~i~~~~q~~~~~~-~------tv~~~~~~~~~~~------~~~~~~~~~~~~~l~~~-------------------- 121 (229)
T cd03254 75 LRSMIGVVLQDTFLFS-G------TIMENIRLGRPNA------TDEEVIEAAKEAGAHDF-------------------- 121 (229)
T ss_pred HhhhEEEecCCchhhh-h------HHHHHHhccCCCC------CHHHHHHHHHHhChHHH--------------------
Confidence 3456999999977654 5 8899988762111 11223334444444221
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhc--ccccCCCCCCCCCCCCCCcceEEe
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~--~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
++.+. ... ..+..+..+|+|++|++.|+
T Consensus 122 -------------------------------------------------~~~~~~~~~~-~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 122 -------------------------------------------------IMKLPNGYDT-VLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred -------------------------------------------------HHhCcccccC-HhhcCCCcCCHHHHHHHHHH
Confidence 11110 000 11233567999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|.+..... .+.++|.+.. .++++++.+|+.+... .+.++.++
T Consensus 152 ~al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~-~~~tii~~sh~~~~~~--~~d~i~~l 210 (229)
T cd03254 152 RAMLR------DPKILILDEATSNIDTETEK-----------LIQEALEKLM-KGRTSIIIAHRLSTIK--NADKILVL 210 (229)
T ss_pred HHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEecCHHHHh--hCCEEEEE
Confidence 99999 99999999998887765543 5566666554 3788999999987654 25666655
No 213
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.4e-20 Score=189.53 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=142.1
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
++.+.++||+++|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+. .
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~---~~g~~i~---~ 92 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL---LGGRSIF---N 92 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEE---ECCEEcc---c
Confidence 45789999999999999999999999 99999999999999999664 2589999 8887321 1
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++..... ....+....+..+++.+|+.....
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------- 154 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPFP-M------SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK----------- 154 (276)
T ss_pred cchhHHHhhheEEeccCCccCC-c------cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhh-----------
Confidence 1111233457999999988877 7 99999987621111 122223333445555555532100
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+ ..+..+..+|+|++|
T Consensus 155 ------------------------------------------------------~----------~l~~~~~~LSgGq~q 170 (276)
T PRK14271 155 ------------------------------------------------------D----------RLSDSPFRLSGGQQQ 170 (276)
T ss_pred ------------------------------------------------------h----------HhhCCcccCCHHHHH
Confidence 0 012235568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ..++++.+|+.+... .+..+
T Consensus 171 rl~LAral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~-~~tiiivsH~~~~~~-~~~dr 231 (276)
T PRK14271 171 LLCLARTLAV------NPEVLLLDEPTSALDPTTTE-----------KIEEFIRSLAD-RLTVIIVTHNLAQAA-RISDR 231 (276)
T ss_pred HHHHHHHHhc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhCCE
Confidence 9999999998 99999999998886655543 55566665544 478899999887433 34456
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 232 i~~l~ 236 (276)
T PRK14271 232 AALFF 236 (276)
T ss_pred EEEEE
Confidence 65553
No 214
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.82 E-value=4.7e-21 Score=210.46 Aligned_cols=187 Identities=20% Similarity=0.240 Sum_probs=134.3
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.++||+++|++ +++|+|+||+| ||+||||||||||+++| ...+.+|+|. ++|. ++... ..
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~---i~g~----~i~~~-~~ 404 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT---LDGV----SVSSL-QD 404 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCE----EhhhH-HH
Confidence 45999999999975 56999999999 99999999999999999 4467889999 8887 33333 44
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|++.+|+. |++||+.++. +. ...+++.++++.+|+...-.+.. .|++.
T Consensus 405 ~lr~~i~~V~Q~~~lF~~-------TI~eNI~~g~-~~-----~~~e~i~~al~~a~l~~~i~~lp----~GldT----- 462 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDT-------TVRDNLRLGR-PD-----ATDEELWAALERVGLADWLRSLP----DGLDT----- 462 (529)
T ss_pred HHHhheEEEccCcccccc-------cHHHHHhccC-CC-----CCHHHHHHHHHHcCCHHHHHhCc----ccccc-----
Confidence 566789999999999843 8999999973 11 12334566777777654211100 00000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.+|+. -..+||||+||++|+|
T Consensus 463 --------------------------------------~ige~---------------------G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 463 --------------------------------------VLGEG---------------------GARLSGGERQRLALAR 483 (529)
T ss_pred --------------------------------------hhccc---------------------cCcCCHHHHHHHHHHH
Confidence 01221 2358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
+.+. +++++|+|||+.+-+..++. .+.+.+.+. ..++|+++.+|.
T Consensus 484 all~------~~~iliLDE~TSaLD~~te~-----------~I~~~l~~~-~~~~TvIiItHr 528 (529)
T TIGR02868 484 ALLA------DAPILLLDEPTEHLDAGTES-----------ELLEDLLAA-LSGKTVVVITHH 528 (529)
T ss_pred HHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHh-cCCCEEEEEecC
Confidence 9999 99999999997765554443 455555432 356888888875
No 215
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.2e-21 Score=188.21 Aligned_cols=203 Identities=14% Similarity=0.136 Sum_probs=142.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+.. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~---i~g~~~~~--~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIY---FKGQDIYD--PQL 77 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEE---ECCEEccc--chh
Confidence 578999999999888999999998 99999999999999999663 2679999 88873211 001
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|+..+++ . |+++|+.++...... ......+.+..+++.+|+....
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------------- 136 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-M------SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------------- 136 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-c------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh--------------
Confidence 11223457999999988876 7 999999875221111 1122333455566666653200
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.. ..+..+..+|+|++|++
T Consensus 137 -------------------------------------------------------~~------~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 137 -------------------------------------------------------KS------ELNKPGTRLSGGQQQRL 155 (250)
T ss_pred -------------------------------------------------------HH------HHhCChhhcCHHHHHHH
Confidence 00 11234556899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+.+... .+..++.
T Consensus 156 ~la~al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tili~sH~~~~~~-~~~d~i~ 216 (250)
T PRK14262 156 CIARALAV------EPEVILLDEPTSALDPIATQ-----------RIEKLLEELSE-NYTIVIVTHNIGQAI-RIADYIA 216 (250)
T ss_pred HHHHHHhC------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHhc-CcEEEEEeCCHHHHH-HhCCEEE
Confidence 99999998 99999999998886655543 56666666544 578899999877332 3455666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 217 ~l~ 219 (250)
T PRK14262 217 FMY 219 (250)
T ss_pred EEE
Confidence 653
No 216
>PLN03140 ABC transporter G family member; Provisional
Probab=99.82 E-value=9e-21 Score=226.36 Aligned_cols=216 Identities=18% Similarity=0.221 Sum_probs=154.1
Q ss_pred Ccccccccc-cccccccCCCCCCCCCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC
Q psy91 52 SPHCLTFPE-AYRIKMTPDGGSCATDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL 124 (541)
Q Consensus 52 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~ 124 (541)
.|..++|.| +|.|..+.. .++.+..++.+.+|+|||+.+ ||+|||||||||||++|+|...
T Consensus 864 ~~~~~~~~~v~y~v~~~~~------------~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~ 931 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAE------------MKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 931 (1470)
T ss_pred CcceEEEEEEEEEEccCcc------------ccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC
Confidence 355688898 888865431 112233445668999999999 9999999999999999987754
Q ss_pred ----CCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceeccc---cccchhhHhHhhhH
Q psy91 125 ----YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT---LPEQVHRKSVKKGF 197 (541)
Q Consensus 125 ----~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~---~~~~~~~~e~~~~v 197 (541)
.|+|. ++|.. ... ...++.+|||+|++.+++.+ ||+|++.|+. ++...+..+..+.+
T Consensus 932 ~g~~~G~I~---inG~~----~~~---~~~~~~igyv~Q~d~~~~~l------TV~E~L~~~a~lr~~~~~~~~~~~~~v 995 (1470)
T PLN03140 932 GGYIEGDIR---ISGFP----KKQ---ETFARISGYCEQNDIHSPQV------TVRESLIYSAFLRLPKEVSKEEKMMFV 995 (1470)
T ss_pred CCcccceEE---ECCcc----CCh---HHhhhheEEEccccccCCCC------cHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 46676 66651 111 12345689999999999999 9999999862 23333344555678
Q ss_pred HHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHH
Q psy91 198 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKST 277 (541)
Q Consensus 198 ~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT 277 (541)
+++++.+|+.++.++.++
T Consensus 996 ~~vl~~lgL~~~~~~~vg-------------------------------------------------------------- 1013 (1470)
T PLN03140 996 DEVMELVELDNLKDAIVG-------------------------------------------------------------- 1013 (1470)
T ss_pred HHHHHHCCChhHhCCccC--------------------------------------------------------------
Confidence 888999888764322111
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
...+..+|+|++|+++|+++++. +|+++++|||+.|.+..... .+.+.|.+
T Consensus 1014 ------------~~~~~~LSgGerkRvsIa~aL~~------~P~lL~LDEPTsgLD~~~a~-----------~v~~~L~~ 1064 (1470)
T PLN03140 1014 ------------LPGVTGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAA-----------IVMRTVRN 1064 (1470)
T ss_pred ------------CCCCCCcCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHH
Confidence 00123589999999999999999 99999999998887655443 66667777
Q ss_pred hcccCcceeeccccchhhhhcccceeEEE
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..+.++++++.+|+...+......++.++
T Consensus 1065 l~~~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1065 TVDTGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred HHHCCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 66678999999999875433344455444
No 217
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.3e-21 Score=189.21 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=143.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++|+++.|+++.+|+++||+| +|+|+|||||||||++|+|.. .+|+|. ++|..+.. ..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~---~~g~~i~~--~~ 80 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVD---FFGQNIYD--PR 80 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEE---ECCEeccc--cc
Confidence 4689999999999888999999999 999999999999999996632 379999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......+..++|++|+..+++ . |+.||+.++..... .......+.+..++..+|+...
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 139 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFP-M------SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE-------------- 139 (259)
T ss_pred cchHhhhhheEEEecccccCC-c------cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch--------------
Confidence 111233457999999988886 7 99999987521111 1222233445555666655320
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+. . ..+..+..+|+|++|+
T Consensus 140 -------------------------------------------------------l~-----~-~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 140 -------------------------------------------------------VK-----D-KLNKSALGLSGGQQQR 158 (259)
T ss_pred -------------------------------------------------------hh-----h-HhcCCcccCCHHHHHH
Confidence 00 0 1123455789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ ++++++.+|+++... .+..++
T Consensus 159 v~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~tH~~~~i~-~~~d~i 219 (259)
T PRK14260 159 LCIARALAI------KPKVLLMDEPCSALDPIATM-----------KVEELIHSLRS-ELTIAIVTHNMQQAT-RVSDFT 219 (259)
T ss_pred HHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhcCeE
Confidence 999999998 99999999998886655543 56666666544 578999999877543 355666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 220 ~~l~ 223 (259)
T PRK14260 220 AFFS 223 (259)
T ss_pred EEEe
Confidence 6663
No 218
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.8e-20 Score=204.59 Aligned_cols=201 Identities=14% Similarity=0.172 Sum_probs=143.5
Q ss_pred Cceeeeccccccc---ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC---CCCCCeeecccCCccceeccccc
Q psy91 78 DYIGFATLPEQVH---RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS---DLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 78 ~~i~~~~l~~~~~---~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~---~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
+.+.++||++.|+ ++.+|+++||+| ||+|||||||||||++|+|. +.+|+|. ++|+.+.. ..
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~---~~g~~~~~---~~ 331 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF---IDGKPVKI---RN 331 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEE---ECCEECCC---CC
Confidence 4689999999994 467999999999 99999999999999999664 3789999 88873211 01
Q ss_pred ccccccccEEEEeCCC---ccccccccccCCCcccceecccccc--c---hhhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 146 KVRGRQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPE--Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~--~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.....+..++||+|+. .+++.+ |+.+|+.++.... . .......+++..+++.+|+..
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 396 (506)
T PRK13549 332 PQQAIAQGIAMVPEDRKRDGIVPVM------GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT--------- 396 (506)
T ss_pred HHHHHHCCCEEeCcchhhCCCcCCC------CHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC---------
Confidence 1112244689999985 477888 9999998752110 0 011222234455555555421
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
...++.+..+|
T Consensus 397 ---------------------------------------------------------------------~~~~~~~~~LS 407 (506)
T PRK13549 397 ---------------------------------------------------------------------ASPELAIARLS 407 (506)
T ss_pred ---------------------------------------------------------------------CCcccccccCC
Confidence 02234566799
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+|++|++.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+.+.++++.+|+++...
T Consensus 408 gG~kqrv~lA~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tvi~~sHd~~~~~- 469 (506)
T PRK13549 408 GGNQQKAVLAKCLLL------NPKILILDEPTRGIDVGAKY-----------EIYKLINQLVQQGVAIIVISSELPEVL- 469 (506)
T ss_pred HHHHHHHHHHHHHhh------CCCEEEEcCCCCCcCHhHHH-----------HHHHHHHHHHHCCCEEEEECCCHHHHH-
Confidence 999999999999998 99999999998887766553 666677766566889999999987543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.++.++
T Consensus 470 ~~~d~v~~l 478 (506)
T PRK13549 470 GLSDRVLVM 478 (506)
T ss_pred HhCCEEEEE
Confidence 355555555
No 219
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.81 E-value=9.7e-21 Score=186.53 Aligned_cols=197 Identities=19% Similarity=0.191 Sum_probs=134.8
Q ss_pred eeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
|.++|+++.|+. +.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL---VDGHDL----ALADPAW 73 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE---ECCeeh----HhcCHHH
Confidence 468899999963 57999999999 9999999999999999955 47789999 888732 1111122
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..++ .. ||.+|+.+.... .. ...+...++..++..
T Consensus 74 ~~~~i~~~~q~~~~~-~~------tv~~nl~~~~~~--~~----~~~~~~~~~~~~~~~--------------------- 119 (237)
T cd03252 74 LRRQVGVVLQENVLF-NR------SIRDNIALADPG--MS----MERVIEAAKLAGAHD--------------------- 119 (237)
T ss_pred HhhcEEEEcCCchhc-cc------hHHHHhhccCCC--CC----HHHHHHHHHHcCcHH---------------------
Confidence 345799999998765 46 999999875211 11 111222233233211
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcceEEe
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+++.+ .... ..+..+..+|+|++|++.|+
T Consensus 120 ------------------------------------------------~l~~l~~~~~~-~~~~~~~~LSgG~~qrv~la 150 (237)
T cd03252 120 ------------------------------------------------FISELPEGYDT-IVGEQGAGLSGGQRQRIAIA 150 (237)
T ss_pred ------------------------------------------------HHHhCcccccc-hhhcCCCcCCHHHHHHHHHH
Confidence 11111 0000 12335667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... .+.+.|.+..+ ++++++.+|+.+... ...++.++
T Consensus 151 ral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~~--~~d~v~~l 209 (237)
T cd03252 151 RALIH------NPRILIFDEATSALDYESEH-----------AIMRNMHDICA-GRTVIIIAHRLSTVK--NADRIIVM 209 (237)
T ss_pred HHHhh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEeCCHHHHH--hCCEEEEE
Confidence 99998 99999999998886655543 56666666543 788999999988653 25565555
No 220
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.81 E-value=1.4e-20 Score=184.03 Aligned_cols=201 Identities=18% Similarity=0.169 Sum_probs=136.5
Q ss_pred CCCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc
Q psy91 76 DRDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
..+.+.++++++.|++ ..+|+++||+| +|+||||||||||+++|+| .+..|+|. ++|..+ ..
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~ 80 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL---LDGKPI----SQ 80 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE---ECCCch----HH
Confidence 4567899999999975 36999999999 9999999999999999955 46789999 888732 11
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....+++.++|++|+..+++ . |+.+|+.++...... .... ......++
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~------tv~~nl~~~~~~~~~--~~~~----~~~~~~~~------------------ 129 (226)
T cd03248 81 YEHKYLHSKVSLVGQEPVLFA-R------SLQDNIAYGLQSCSF--ECVK----EAAQKAHA------------------ 129 (226)
T ss_pred cCHHHHHhhEEEEecccHHHh-h------hHHHHhccccCCCCH--HHHH----HHHHHcCc------------------
Confidence 112233457999999987764 6 899999876221111 0000 00000000
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCc
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q 302 (541)
..+++.+ .... ..+..+..+|+|++|
T Consensus 130 ---------------------------------------------------~~~l~~l~~gl~~-~~~~~~~~LSgG~~q 157 (226)
T cd03248 130 ---------------------------------------------------HSFISELASGYDT-EVGEKGSQLSGGQKQ 157 (226)
T ss_pred ---------------------------------------------------HHHHHhccccccc-hhhcCCCcCCHHHHH
Confidence 0112222 1111 123446679999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+... . ..+
T Consensus 158 rv~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~~-~-~d~ 217 (226)
T cd03248 158 RVAIARALIR------NPQVLILDEATSALDAESEQ-----------QVQQALYDWPE-RRTVLVIAHRLSTVE-R-ADQ 217 (226)
T ss_pred HHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHcC-CCEEEEEECCHHHHH-h-CCE
Confidence 9999999998 99999999998876655543 56666766544 578889999987653 2 556
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 218 i~~l 221 (226)
T cd03248 218 ILVL 221 (226)
T ss_pred EEEe
Confidence 5554
No 221
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=7.6e-21 Score=212.03 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=148.7
Q ss_pred CCCceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCcccee---
Q psy91 76 DRDYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVI--- 140 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~--- 140 (541)
..+.|.++||++.|+. ..+|++|||+| ||+|||||||||||++|+|. +..|.|. ++|..+..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~---~~g~~~~~~~~ 85 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ---CDKMLLRRRSR 85 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEE---ECCEEeccccc
Confidence 3457999999999963 46999999999 99999999999999999554 6789998 66642200
Q ss_pred ---cc---cccccc-cccccEEEEeCCC--ccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCcc
Q psy91 141 ---EV---AGTKVR-GRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLG 210 (541)
Q Consensus 141 ---~~---~~~~~~-~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ 210 (541)
.. .....+ .+.+.+|||+|++ .+++.+ ||.+|+.++... .+....+..+++.++++.+|+....
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 159 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVF------TVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ 159 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh
Confidence 00 000011 1234699999997 688889 999999886211 1233444556677778777764200
Q ss_pred chhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCC
Q psy91 211 KSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 290 (541)
Q Consensus 211 ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~ 290 (541)
...+
T Consensus 160 ----------------------------------------------------------------------------~~~~ 163 (623)
T PRK10261 160 ----------------------------------------------------------------------------TILS 163 (623)
T ss_pred ----------------------------------------------------------------------------hHHh
Confidence 0123
Q ss_pred CCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeecc
Q psy91 291 RKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEK 369 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~ 369 (541)
+++..+|+|++|++.|+++++. +++|+|+|||+.+.+..... ++.+++.+..+. +.++++.+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~------~P~lLllDEPt~~LD~~~~~-----------~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSC------RPAVLIADEPTTALDVTIQA-----------QILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhC------CCCEEEEeCCCCccCHHHHH-----------HHHHHHHHHHHhcCCEEEEEc
Confidence 3566799999999999999998 99999999997776554443 677777776544 78999999
Q ss_pred ccchhhhhcccceeEEEc
Q psy91 370 KSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvIp 387 (541)
|+++... ++..++.++.
T Consensus 227 Hdl~~~~-~~adri~vl~ 243 (623)
T PRK10261 227 HDMGVVA-EIADRVLVMY 243 (623)
T ss_pred CCHHHHH-HhCCEEEEee
Confidence 9987543 3556666653
No 222
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.3e-20 Score=187.33 Aligned_cols=204 Identities=16% Similarity=0.139 Sum_probs=140.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++|+++.|+++.+|+++||+| ||+|||||||||||++|+|. + .+|+|. ++|..+.. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~~~~--~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS---LRGQNIYA--PN 78 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEE---EcCEEccc--cc
Confidence 4689999999999888999999999 99999999999999999763 2 379999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++ . |+.+|+.++....+.. .....+.+...++.+|+...
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 137 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-F------SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------------- 137 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-C------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc--------------
Confidence 111123457999999988876 7 9999998752111111 11112233444554444210
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+. + ..+..+..+|+|++|+
T Consensus 138 -------------------------------------------------------i~-----~-~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 138 -------------------------------------------------------VK-----D-HLHESALSLSGGQQQR 156 (252)
T ss_pred -------------------------------------------------------hh-----h-HHhcCcccCCHHHHHH
Confidence 00 0 1123456789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.++|.+..+ +.++++.+|+.+... .+..++
T Consensus 157 v~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tii~vsH~~~~~~-~~~d~i 217 (252)
T PRK14255 157 VCIARVLAV------KPDVILLDEPTSALDPISST-----------QIENMLLELRD-QYTIILVTHSMHQAS-RISDKT 217 (252)
T ss_pred HHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHh-CCEEEEEECCHHHHH-HhCCEE
Confidence 999999999 99999999998887665553 56666666544 478889999877433 344566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 218 ~~l~ 221 (252)
T PRK14255 218 AFFL 221 (252)
T ss_pred EEEE
Confidence 5553
No 223
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-20 Score=187.09 Aligned_cols=203 Identities=14% Similarity=0.101 Sum_probs=140.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C-----CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D-----LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~-----~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. + .+|+|. ++|..+.. . ..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~~~~-~-~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRIL---LDGQDIYG-P-RV 78 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEE---ECCEEccc-C-cc
Confidence 578999999999889999999999 99999999999999999765 2 269999 88873211 0 01
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|+..+++.+ |+.+|+.++...... ......+.+..++..+++...
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~------t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------- 137 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTM------SVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE--------------- 137 (252)
T ss_pred CHHHhhceeEEEeccCccCcCC------CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---------------
Confidence 1113345799999999999888 999999765211111 112222333333443333210
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+. . ..+..+..+|+|++|++
T Consensus 138 ------------------------------------------------------l~-----~-~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 138 ------------------------------------------------------VK-----D-RLKTPATGLSGGQQQRL 157 (252)
T ss_pred ------------------------------------------------------hh-----h-hhcCCcccCCHHHHHHH
Confidence 00 0 11234567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+... .+..++.
T Consensus 158 ~laral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sH~~~~~~-~~~d~i~ 218 (252)
T PRK14272 158 CIARALAV------EPEILLMDEPTSALDPASTA-----------RIEDLMTDLKK-VTTIIIVTHNMHQAA-RVSDTTS 218 (252)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-HhCCEEE
Confidence 99999999 99999999998887655543 56666666543 578899999877433 3555666
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 219 ~l 220 (252)
T PRK14272 219 FF 220 (252)
T ss_pred EE
Confidence 55
No 224
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.81 E-value=9.1e-21 Score=188.04 Aligned_cols=204 Identities=17% Similarity=0.166 Sum_probs=148.7
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~ 142 (541)
++++||+..|.. ..+++||||+| ||||.|||||||+.++|++.. .+|+|. ++|+++....
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~---f~g~~l~~l~ 78 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL---FDGKDLLSLS 78 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEE---ECCcccccCC
Confidence 578899998864 36999999999 999999999999999994422 357787 7787443221
Q ss_pred cccccccccccEEEEeCCC--ccccccccccCCCcccceecccc-ccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 143 AGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATL-PEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~-~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.....+.+.+.++||||++ .|.|.+ ++.+.+.-... .... .+++..+++.++|+.+|+....
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~sLnPv~------~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~-------- 144 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTSLNPVM------TIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE-------- 144 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhhcCChh------hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------
Confidence 1111134556899999995 688888 88766654411 1222 4566777888889998886410
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
...+.++.++||
T Consensus 145 --------------------------------------------------------------------~~~~~YPhelSG 156 (316)
T COG0444 145 --------------------------------------------------------------------RRLKSYPHELSG 156 (316)
T ss_pred --------------------------------------------------------------------HHHhhCCcccCC
Confidence 012346788999
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~ 377 (541)
|++||+.|+.+++. +|+|+|.|||+.+.++.... |+.+.|++..+ .+.++++.+|++-+..
T Consensus 157 GMrQRV~IAmala~------~P~LlIADEPTTALDvt~Qa-----------qIl~Ll~~l~~e~~~aiilITHDl~vva- 218 (316)
T COG0444 157 GMRQRVMIAMALAL------NPKLLIADEPTTALDVTVQA-----------QILDLLKELQREKGTALILITHDLGVVA- 218 (316)
T ss_pred cHHHHHHHHHHHhC------CCCEEEeCCCcchhhHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-
Confidence 99999999999998 99999999997776554443 88888888876 5778889999987654
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.+|.|.
T Consensus 219 ~~aDri~VM 227 (316)
T COG0444 219 EIADRVAVM 227 (316)
T ss_pred HhcceEEEE
Confidence 366666553
No 225
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.1e-20 Score=177.89 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=125.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|+++.|+++.+|+++||++ +|+||||||||||+++|+| .+..|+|. ++|..+.. ... .....+
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~-~~~-~~~~~~ 75 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL---IDGEDLTD-LED-ELPPLR 75 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEccc-cch-hHHHHh
Confidence 46889999998888999999999 9999999999999999954 45689999 77862211 100 012345
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.+.
T Consensus 76 ~~i~~~~q~~~~~~~~------t~~~~l~~~------------------------------------------------- 100 (178)
T cd03229 76 RRIGMVFQDFALFPHL------TVLENIALG------------------------------------------------- 100 (178)
T ss_pred hcEEEEecCCccCCCC------CHHHheeec-------------------------------------------------
Confidence 6799999998888777 887776542
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+|+|++|++.|+++++
T Consensus 101 ----------------------------------------------------------------lS~G~~qr~~la~al~ 116 (178)
T cd03229 101 ----------------------------------------------------------------LSGGQQQRVALARALA 116 (178)
T ss_pred ----------------------------------------------------------------CCHHHHHHHHHHHHHH
Confidence 6788999999999998
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..+.. .+.+++.+..+. ++++++.+|+.+... .+..++.++
T Consensus 117 ~------~p~llilDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 174 (178)
T cd03229 117 M------DPDVLLLDEPTSALDPITRR-----------EVRALLKSLQAQLGITVVLVTHDLDEAA-RLADRVVVL 174 (178)
T ss_pred C------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 8 99999999998887766554 667777766665 688999999876543 233444443
No 226
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.6e-20 Score=188.07 Aligned_cols=203 Identities=14% Similarity=0.071 Sum_probs=141.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++||++.|+++.+|+++||+| +|+|||||||||||++|++. +..|+|. ++|..+.. ..
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~i~~--~~ 83 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT---FHGKNLYA--PD 83 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE---ECCEEccc--cc
Confidence 3689999999999889999999999 99999999999999999653 2579999 88873211 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......++.++|++|+..+++ . |+.+|+.++....... ....+.+..++..+|+...
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~-~------tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------------- 140 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFP-K------SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDE--------------- 140 (264)
T ss_pred cChHHHhhhEEEEccCCcccc-c------cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhh---------------
Confidence 111233457999999987765 6 8999998762111111 1122334444554444210
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+.. ..+..+..+|+|++|++
T Consensus 141 ------------------------------------------------------l~~------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 141 ------------------------------------------------------VKD------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred ------------------------------------------------------HHH------HhcCCcccCCHHHHHHH
Confidence 000 11234567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... ++.++|.+..+ ++++++.+|+.+.. ..+..++.
T Consensus 161 ~laral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~-~~tvi~vtH~~~~~-~~~~d~v~ 221 (264)
T PRK14243 161 CIARAIAV------QPEVILMDEPCSALDPISTL-----------RIEELMHELKE-QYTIIIVTHNMQQA-ARVSDMTA 221 (264)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEecCHHHH-HHhCCEEE
Confidence 99999998 99999999998887665543 56666666544 47888999987643 34566777
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 222 ~l~ 224 (264)
T PRK14243 222 FFN 224 (264)
T ss_pred EEe
Confidence 774
No 227
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.2e-20 Score=187.99 Aligned_cols=202 Identities=15% Similarity=0.049 Sum_probs=139.4
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|.. ..|+|. ++|..+.. . .
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~---~~g~~l~~-~-~ 93 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLL---YRDRNIYD-S-Q 93 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEE---ECCEeccc-c-c
Confidence 4789999999999888999999999 999999999999999996531 479999 88873211 0 0
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......++.++|++|+..+++ . |+.+|+.++....... ....+.+..+++.+|+...
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~------tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------------- 150 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFP-K------SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEE--------------- 150 (274)
T ss_pred chhHHHhhcEEEEccCCcccc-c------cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchh---------------
Confidence 111123457999999987764 5 8899988752211111 1111223334444443210
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+. + ..+..+..+|+|++|++
T Consensus 151 ------------------------------------------------------l~-----~-~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 151 ------------------------------------------------------VK-----D-KLKEKGTALSGGQQQRL 170 (274)
T ss_pred ------------------------------------------------------hH-----H-HhcCCcccCCHHHHHHH
Confidence 00 0 11234567899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|.+..... .+.++|.+..+ +.++++.+|+.+... .+..++.
T Consensus 171 ~LAraL~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~-~~tiii~sH~~~~~~-~~~d~i~ 231 (274)
T PRK14265 171 CIARAIAM------KPDVLLMDEPCSALDPISTR-----------QVEELCLELKE-QYTIIMVTHNMQQAS-RVADWTA 231 (274)
T ss_pred HHHHHHhh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhCCEEE
Confidence 99999998 99999999998886655543 56666666644 578899999887543 3556776
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 232 ~l 233 (274)
T PRK14265 232 FF 233 (274)
T ss_pred EE
Confidence 66
No 228
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.9e-20 Score=203.21 Aligned_cols=199 Identities=12% Similarity=0.165 Sum_probs=141.1
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++|+++.|+ .+|+++||+| +|+|||||||||||++|+| .++.|+|+ ++|+.+. .......
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~---~~g~~~~---~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR---LNGKDIS---PRSPLDA 335 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE---ECCEECC---CCCHHHH
Confidence 4699999999764 4899999999 9999999999999999955 46789999 8887321 1111112
Q ss_pred ccccEEEEeCC---CccccccccccCCCcccceecccccc--------ch-hhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 150 RQYPWGVVEGS---TVLTPSLIGSLFQTDRDYIGFATLPE--------QV-HRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 150 ~~~~~g~V~Q~---~~l~~~lig~~~qtv~e~l~~~~~~~--------~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.++.+|||+|+ ..+++.+ ||.+|+.++.... +. ........+..+++.+|+..
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 400 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNF------SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC--------- 400 (510)
T ss_pred HHCCcEEccCccccCCCcCCC------cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC---------
Confidence 23468999998 4688889 9999998762110 00 01111123344444444320
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
+ ..++.+..+|
T Consensus 401 --------------------------------------------------------------------~-~~~~~~~~LS 411 (510)
T PRK09700 401 --------------------------------------------------------------------H-SVNQNITELS 411 (510)
T ss_pred --------------------------------------------------------------------C-CccCccccCC
Confidence 1 2345677899
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+|++|++.|+++++. +++++|+|||+.|.+..+.. .+.++|.+..+.+.++++.+|+++...
T Consensus 412 gGq~qrv~lAral~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tvi~vsHd~~~~~- 473 (510)
T PRK09700 412 GGNQQKVLISKWLCC------CPEVIIFDEPTRGIDVGAKA-----------EIYKVMRQLADDGKVILMVSSELPEII- 473 (510)
T ss_pred hHHHHHHHHHHHHhc------CCCEEEECCCCCCcCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-
Confidence 999999999999998 99999999998887766553 666777766556889999999987543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.++.++
T Consensus 474 ~~~d~i~~l 482 (510)
T PRK09700 474 TVCDRIAVF 482 (510)
T ss_pred hhCCEEEEE
Confidence 355566655
No 229
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.7e-20 Score=187.56 Aligned_cols=205 Identities=14% Similarity=0.126 Sum_probs=141.4
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-C------CCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-L------YGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-~------~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.+.++|+++.|+++.+|+++||++ +|+|||||||||||++|++.. . .|+|. ++|+.+.. ..
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~---~~g~~i~~--~~ 80 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVE---FFNQNIYE--RR 80 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEE---ECCEEhhc--cc
Confidence 3689999999998888999999999 999999999999999996542 2 45555 55542110 01
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
......++.++|++|+..+++ . |+.||+.++....+. +..+..+.+..+++.+|+.+.
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 139 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLFP-M------SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------------- 139 (261)
T ss_pred cchHHhhccEEEEecCCccCc-c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch--------------
Confidence 111233457999999988887 8 999999775211111 122233445666666665320
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
++. ..+..+..+|+|++|+
T Consensus 140 -------------------------------------------------------~~~------~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 140 -------------------------------------------------------IKH------KIHKSALDLSGGQQQR 158 (261)
T ss_pred -------------------------------------------------------hhh------HhcCCcccCCHHHHHH
Confidence 000 1122455789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ .++++++.+|+.+... .+..+
T Consensus 159 v~laral~~------~p~vllLDEP~~~LD~~~~~-----------~l~~~l~~l~~~~~~tiiivsH~~~~i~-~~~d~ 220 (261)
T PRK14258 159 LCIARALAV------KPKVLLMDEPCFGLDPIASM-----------KVESLIQSLRLRSELTMVIVSHNLHQVS-RLSDF 220 (261)
T ss_pred HHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEECCHHHHH-HhcCE
Confidence 999999998 99999999998887665543 56666766543 4788999999987543 35566
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 221 i~~l~ 225 (261)
T PRK14258 221 TAFFK 225 (261)
T ss_pred EEEEc
Confidence 66664
No 230
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.4e-20 Score=189.16 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=139.7
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|+++.|+++.+|+++||+| ||+|+|||||||||++|+|. +.+|+|. ++|..+.. .
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~---~~g~~~~~--~ 96 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKIL---YRDQNIFD--K 96 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEE---ECCEEccc--c
Confidence 34789999999999888999999999 99999999999999999664 3779999 88873211 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++....... .......+..++..+++..
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 155 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPFP-K------SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------------- 155 (271)
T ss_pred cccHHHHhhhEEEEecCCcccc-c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc--------------
Confidence 1111233457999999987764 5 8999998752111111 1111222333333333210
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+ +. . ..+..+..+|+|++|
T Consensus 156 -------------------------------------------------~------l~-----~-~~~~~~~~LSgGe~q 174 (271)
T PRK14238 156 -------------------------------------------------E------LK-----D-RLHDNAYGLSGGQQQ 174 (271)
T ss_pred -------------------------------------------------h------HH-----H-HHhcCcccCCHHHHH
Confidence 0 00 0 112345678999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ ++++++.+|+.+... .++.+
T Consensus 175 rv~laraL~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiiivsH~~~~i~-~~~d~ 235 (271)
T PRK14238 175 RLCIARCLAI------EPDVILMDEPTSALDPISTL-----------KVEELVQELKK-DYSIIIVTHNMQQAA-RISDK 235 (271)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCCcCCHHHHH-----------HHHHHHHHHHc-CCEEEEEEcCHHHHH-HhCCE
Confidence 9999999998 99999999998887665553 56666766654 578899999877533 34556
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 236 i~~l 239 (271)
T PRK14238 236 TAFF 239 (271)
T ss_pred EEEE
Confidence 6555
No 231
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.81 E-value=1.4e-20 Score=209.11 Aligned_cols=205 Identities=20% Similarity=0.242 Sum_probs=143.0
Q ss_pred CCCCceeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccc
Q psy91 75 TDRDYIGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
...+.|.++|++++|+.. .+|+|+|++| ||+|+||||||||+|+| +..|..|+|+ ++|. ++..
T Consensus 467 ~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~---~dg~----dl~~ 539 (709)
T COG2274 467 KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL---LDGV----DLND 539 (709)
T ss_pred ccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCE----eHHh
Confidence 345689999999999866 6999999999 99999999999999999 5678899999 8888 4555
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
-.....++.+|||.|++.|| .| |++||+.++.-.. + .+.+-+++...|.... +..+ |
T Consensus 540 i~~~~lR~~ig~V~Q~~~Lf---~g----SI~eNi~l~~p~~--~----~e~i~~A~~~ag~~~f--------I~~l--P 596 (709)
T COG2274 540 IDLASLRRQVGYVLQDPFLF---SG----SIRENIALGNPEA--T----DEEIIEAAQLAGAHEF--------IENL--P 596 (709)
T ss_pred cCHHHHHhheeEEcccchhh---cC----cHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHH--------HHhc--c
Confidence 55567788999999999998 44 8999999983111 1 1223333333333221 0000 0
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.||.+ .+|+. -..+||||+|++
T Consensus 597 ------------------~gy~t-------------------~v~E~---------------------G~~LSGGQrQrl 618 (709)
T COG2274 597 ------------------MGYDT-------------------PVGEG---------------------GANLSGGQRQRL 618 (709)
T ss_pred ------------------ccccc-------------------ccccC---------------------CCCCCHHHHHHH
Confidence 01110 12222 346899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +|+++|+|||+..-+..++. ++.+.|.+.. .++|+++.+|...... ...++.
T Consensus 619 alARaLl~------~P~ILlLDEaTSaLD~~sE~-----------~I~~~L~~~~-~~~T~I~IaHRl~ti~--~adrIi 678 (709)
T COG2274 619 ALARALLS------KPKILLLDEATSALDPETEA-----------IILQNLLQIL-QGRTVIIIAHRLSTIR--SADRII 678 (709)
T ss_pred HHHHHhcc------CCCEEEEeCcccccCHhHHH-----------HHHHHHHHHh-cCCeEEEEEccchHhh--hccEEE
Confidence 99999999 99999999997776655553 5555554433 3588888888755332 344555
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
|.+
T Consensus 679 Vl~ 681 (709)
T COG2274 679 VLD 681 (709)
T ss_pred Ecc
Confidence 554
No 232
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.5e-20 Score=176.32 Aligned_cols=160 Identities=19% Similarity=0.300 Sum_probs=123.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++++++.|+++.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ .... ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~---~~g~~~----~~~~-~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK---VLGKDI----KKEP-EEVK 72 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEEc----ccch-Hhhh
Confidence 46789999998888999999999 9999999999999999966 46789999 888732 1111 2334
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..+++.+ |+.+|+.
T Consensus 73 ~~i~~~~q~~~~~~~~------tv~~~~~--------------------------------------------------- 95 (173)
T cd03230 73 RRIGYLPEEPSLYENL------TVRENLK--------------------------------------------------- 95 (173)
T ss_pred ccEEEEecCCccccCC------cHHHHhh---------------------------------------------------
Confidence 5799999998887777 7776642
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+|+|++|++.|+++++
T Consensus 96 ----------------------------------------------------------------LS~G~~qrv~laral~ 111 (173)
T cd03230 96 ----------------------------------------------------------------LSGGMKQRLALAQALL 111 (173)
T ss_pred ----------------------------------------------------------------cCHHHHHHHHHHHHHH
Confidence 6788999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+.+... .+..++.++
T Consensus 112 ~------~p~illlDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tiii~th~~~~~~-~~~d~i~~l 168 (173)
T cd03230 112 H------DPELLILDEPTSGLDPESRR-----------EFWELLRELKKEGKTILLSSHILEEAE-RLCDRVAIL 168 (173)
T ss_pred c------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEECCCHHHHH-HhCCEEEEE
Confidence 8 99999999998876655543 666777766555788899999877433 344455544
No 233
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.2e-20 Score=187.76 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=141.9
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.+.++|+++.|+++.+|+++||+| +|+||||||||||+++|+|. +.+|+|. ++|..+.. .
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~---i~g~~i~~--~ 97 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIR---LDGQNIYD--K 97 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEE---ECCEECcc--c
Confidence 34689999999998888999999999 99999999999999999665 3689999 88873311 0
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++....+. ......+.+..+++.+|+...
T Consensus 98 ~~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------- 157 (272)
T PRK14236 98 KVDVAELRRRVGMVFQRPNPFP-K------SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE------------- 157 (272)
T ss_pred ccCHHHHhccEEEEecCCccCc-c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChh-------------
Confidence 1111233567999999987775 5 899999775211111 111222345555555554320
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+.. ..+..+..+|+|++|
T Consensus 158 --------------------------------------------------------~~~------~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 158 --------------------------------------------------------VKD------RLHENAFGLSGGQQQ 175 (272)
T ss_pred --------------------------------------------------------HHH------HhhCCcccCCHHHHH
Confidence 000 112335568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ +.++++.+|+.+... .+..+
T Consensus 176 rv~laral~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~L~~~~~-~~tiiivtH~~~~~~-~~~d~ 236 (272)
T PRK14236 176 RLVIARAIAI------EPEVLLLDEPTSALDPISTL-----------KIEELITELKS-KYTIVIVTHNMQQAA-RVSDY 236 (272)
T ss_pred HHHHHHHHHC------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHh-CCeEEEEeCCHHHHH-hhCCE
Confidence 9999999998 99999999998887655443 56666666654 578899999877433 34556
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 237 i~~l~ 241 (272)
T PRK14236 237 TAFMY 241 (272)
T ss_pred EEEEE
Confidence 65553
No 234
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.81 E-value=2.9e-20 Score=202.82 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=143.0
Q ss_pred Cceeeecccccc---cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C-CCCCeeecccCCccceeccccc
Q psy91 78 DYIGFATLPEQV---HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D-LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 78 ~~i~~~~l~~~~---~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~-~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
..+.++|+++.| +++.+|+++||+| ||+|||||||||||++|+|. | .+|+|. ++|+.+. ...
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~---~~g~~~~---~~~ 329 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF---INGKPVD---IRN 329 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE---ECCEECC---CCC
Confidence 368999999999 3467999999999 99999999999999999664 2 589999 8887321 011
Q ss_pred ccccccccEEEEeCCC---ccccccccccCCCcccceecccccc-----chhhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 146 KVRGRQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPE-----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~-----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.....++.+|||+|+. .+++.+ |+.+|+.++.... ..........+..+++.+|+..
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~l~~~~------tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 394 (500)
T TIGR02633 330 PAQAIRAGIAMVPEDRKRHGIVPIL------GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT--------- 394 (500)
T ss_pred HHHHHhCCCEEcCcchhhCCcCCCC------CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC---------
Confidence 1122345789999995 588888 9999998862110 0111112233444455444421
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
...++.+..+|
T Consensus 395 ---------------------------------------------------------------------~~~~~~~~~LS 405 (500)
T TIGR02633 395 ---------------------------------------------------------------------ASPFLPIGRLS 405 (500)
T ss_pred ---------------------------------------------------------------------CCccCccccCC
Confidence 12344566799
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhh
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~ 377 (541)
+|++|++.|+++++. +++++|+|||..|.+..+.. .+.+++.+..+.+.++++.+|+++...
T Consensus 406 gGqkqrv~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tviivsHd~~~~~- 467 (500)
T TIGR02633 406 GGNQQKAVLAKMLLT------NPRVLILDEPTRGVDVGAKY-----------EIYKLINQLAQEGVAIIVVSSELAEVL- 467 (500)
T ss_pred HHHHHHHHHHHHHhh------CCCEEEEcCCCCCcCHhHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-
Confidence 999999999999998 99999999998887766553 566666666566889999999987543
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.++.++
T Consensus 468 ~~~d~v~~l 476 (500)
T TIGR02633 468 GLSDRVLVI 476 (500)
T ss_pred HhCCEEEEE
Confidence 345555555
No 235
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.81 E-value=1.5e-20 Score=206.31 Aligned_cols=206 Identities=16% Similarity=0.187 Sum_probs=144.5
Q ss_pred Cceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C-----CCCCeeecccCCcccee
Q psy91 78 DYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D-----LYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 78 ~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~-----~~G~i~~~~~~G~~~~~ 140 (541)
+.++++|+++.|++ +.+|++|||+| ||+|||||||||||++|++. + ++|+|. ++|..+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIR---FHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEE---ECCEeccc
Confidence 35899999999963 57999999999 99999999999999999654 2 479999 88873211
Q ss_pred ccccccc-ccccccEEEEeCCCc--cccccccccCCCcccceeccc-cccchhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 141 EVAGTKV-RGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFAT-LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 141 ~~~~~~~-~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~-~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
...... ..+++.+|||+|+.. +++.+ ++.+++.+.. ...+....+..+++.++++.+|+.+...
T Consensus 81 -~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----- 148 (529)
T PRK15134 81 -ASEQTLRGVRGNKIAMIFQEPMVSLNPLH------TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK----- 148 (529)
T ss_pred -CCHHHHHHHhcCceEEEecCchhhcCchh------hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH-----
Confidence 111111 122347999999864 56667 8888876431 1112233344556677777777643100
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
..++.+..+
T Consensus 149 -----------------------------------------------------------------------~~~~~~~~L 157 (529)
T PRK15134 149 -----------------------------------------------------------------------RLTDYPHQL 157 (529)
T ss_pred -----------------------------------------------------------------------HHhhCCccc
Confidence 113356679
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~ 375 (541)
|+|++|++.|+++++. +|+++|+|||..|.+..... .+.++|.+..+. +.++++.+|+++..
T Consensus 158 SgGe~qrv~iAraL~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tvi~vtHd~~~~ 220 (529)
T PRK15134 158 SGGERQRVMIAMALLT------RPELLIADEPTTALDVSVQA-----------QILQLLRELQQELNMGLLFITHNLSIV 220 (529)
T ss_pred CHHHHHHHHHHHHHhc------CCCEEEEcCCCCccCHHHHH-----------HHHHHHHHHHHhcCCeEEEEcCcHHHH
Confidence 9999999999999998 99999999998876655543 667777776554 78899999998754
Q ss_pred hhcccceeEEEc
Q psy91 376 ERGVKLRLTVVD 387 (541)
Q Consensus 376 ~~~l~~rvnvIp 387 (541)
. .+..++.++.
T Consensus 221 ~-~~~dri~~l~ 231 (529)
T PRK15134 221 R-KLADRVAVMQ 231 (529)
T ss_pred H-HhcCEEEEEE
Confidence 3 3555665553
No 236
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.81 E-value=1.6e-20 Score=186.84 Aligned_cols=204 Identities=19% Similarity=0.177 Sum_probs=135.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccce-ecccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTV-IEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~-~~~~~~~~~ 148 (541)
+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|.... ..+......
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT---YIMRSGAELELYQLSEA 78 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---EecccccccccccCCHH
Confidence 3588999999999888999999999 9999999999999999955 46789999 6665200 001111111
Q ss_pred ----cccccEEEEeCCCc--cccccccccCCCcccceeccccccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 149 ----GRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 149 ----~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
.+++.++|++|+.. +.+.+ ++.+|+.+...... .........+..+++.+|+.+
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------------- 139 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRV------SAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP------------- 139 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccc------cHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-------------
Confidence 12346899999864 34445 66777654210000 001112233444455444421
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
...+..+..+|+|++
T Consensus 140 -----------------------------------------------------------------~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 140 -----------------------------------------------------------------TRIDDLPRAFSGGMQ 154 (253)
T ss_pred -----------------------------------------------------------------hhhhcCchhcCHHHH
Confidence 012234557899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~ 380 (541)
|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ .+.++++.+|+.+... .+.
T Consensus 155 qrv~laral~~------~p~vlllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~~tii~vsH~~~~~~-~~~ 216 (253)
T TIGR02323 155 QRLQIARNLVT------RPRLVFMDEPTGGLDVSVQA-----------RLLDLLRGLVRDLGLAVIIVTHDLGVAR-LLA 216 (253)
T ss_pred HHHHHHHHHhc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-Hhc
Confidence 99999999999 99999999998887665543 56666666544 3788999999877443 244
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 217 d~~~~l 222 (253)
T TIGR02323 217 QRLLVM 222 (253)
T ss_pred CEEEEE
Confidence 455554
No 237
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.1e-20 Score=184.01 Aligned_cols=197 Identities=17% Similarity=0.200 Sum_probs=136.6
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++++++.|+ ++.+|+++||+| +|+|||||||||||++|+| .+..|+|. ++|..+ .......+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~---~~g~~~----~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL---IDGQDI----REVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE---ECCEEh----hhCCHHHH
Confidence 46789999996 567999999999 9999999999999999955 46789999 888732 21122233
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++|++|+..+++ . |+.+|+.++... .... .+...+..+++..
T Consensus 74 ~~~i~~~~q~~~~~~-~------tv~~nl~~~~~~--~~~~----~~~~~~~~~~l~~---------------------- 118 (236)
T cd03253 74 RRAIGVVPQDTVLFN-D------TIGYNIRYGRPD--ATDE----EVIEAAKAAQIHD---------------------- 118 (236)
T ss_pred HhhEEEECCCChhhc-c------hHHHHHhhcCCC--CCHH----HHHHHHHHcCcHH----------------------
Confidence 457999999987764 6 999999876321 1111 1222333333311
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcceEEee
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++..+ .... .....+..+|+|++|++.|++
T Consensus 119 -----------------------------------------------~~~~l~~~~~~-~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 119 -----------------------------------------------KIMRFPDGYDT-IVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred -----------------------------------------------HHHhccccccc-hhhcCCCcCCHHHHHHHHHHH
Confidence 00000 0000 112335679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +|+++|+|||..|-+..... .+.++|.+..+ +.++++.+|+.+.... +.++.++
T Consensus 151 aL~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 151 AILK------NPPILLLDEATSALDTHTER-----------EIQAALRDVSK-GRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEcCCHHHHHh--CCEEEEE
Confidence 9999 99999999998886655543 66777777666 8899999999886643 5666655
No 238
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.4e-20 Score=179.39 Aligned_cols=166 Identities=22% Similarity=0.254 Sum_probs=129.0
Q ss_pred ceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceecccc
Q psy91 79 YIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 79 ~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
.+.++++++.|++ +.+|+++||++ +|+|||||||||||++|+|. +..|+|. ++|+.+ .
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~---~~g~~~----~- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL---INGRPL----D- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE---ECCEeh----H-
Confidence 4789999999975 67999999998 99999999999999999763 5789999 888732 1
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
...++.++|++|+..+++.+ |+++|+.++.. +.
T Consensus 75 ---~~~~~~i~~~~q~~~~~~~~------tv~~~l~~~~~----------------~~---------------------- 107 (192)
T cd03232 75 ---KNFQRSTGYVEQQDVHSPNL------TVREALRFSAL----------------LR---------------------- 107 (192)
T ss_pred ---HHhhhceEEecccCccccCC------cHHHHHHHHHH----------------Hh----------------------
Confidence 13345789999998888888 99998875410 00
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.+|+|++|++
T Consensus 108 ----------------------------------------------------------------------~LSgGe~qrv 117 (192)
T cd03232 108 ----------------------------------------------------------------------GLSVEQRKRL 117 (192)
T ss_pred ----------------------------------------------------------------------cCCHHHhHHH
Confidence 4789999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|-+..... .+.+.+.+..+.++++++.+|+.+.+......++.
T Consensus 118 ~la~al~~------~p~vlllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~ 180 (192)
T cd03232 118 TIGVELAA------KPSILFLDEPTSGLDSQAAY-----------NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLL 180 (192)
T ss_pred HHHHHHhc------CCcEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEE
Confidence 99999998 99999999998887665553 56666666555578999999998742233445555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 181 ~l 182 (192)
T cd03232 181 LL 182 (192)
T ss_pred EE
Confidence 54
No 239
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.80 E-value=4e-20 Score=183.35 Aligned_cols=199 Identities=16% Similarity=0.142 Sum_probs=129.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccc-c
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
|.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+ ..... .
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~---~~g~~~----~~~~~~~ 74 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE---FKGKDL----LELSPED 74 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEE---ECCCcc----ccCCHHH
Confidence 67899999999888999999998 99999999999999999665 6789999 888732 11111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccc--ccc--c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT--LPE--Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~--~~~--~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
..+..++|++|+..+++.+ ++.+++.+.. +.. . .........+...+
T Consensus 75 ~~~~~i~~~~q~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------------- 128 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGV------SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKI-------------------- 128 (248)
T ss_pred HhhcceEEEecCchhccch------hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHH--------------------
Confidence 2234689999998877766 5433322110 000 0 00000001111111
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC-CCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP-NVNDRQ 300 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~-~ls~g~ 300 (541)
..+...+.+.+..+. .+|+|+
T Consensus 129 ----------------------------------------------------------~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 129 ----------------------------------------------------------ALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred ----------------------------------------------------------HHcCCChhhcccCCCCCCCHHH
Confidence 111111112223333 699999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +|+++|+|||..|-+..... .+.+.|.+..+.++++++.+|+.++......
T Consensus 151 ~qrv~laral~~------~p~illLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~ 213 (248)
T PRK09580 151 KKRNDILQMAVL------EPELCILDESDSGLDIDALK-----------IVADGVNSLRDGKRSFIIVTHYQRILDYIKP 213 (248)
T ss_pred HHHHHHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHHhhhC
Confidence 999999999999 99999999998876655543 5556666655557899999999876543224
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 214 d~i~~l 219 (248)
T PRK09580 214 DYVHVL 219 (248)
T ss_pred CEEEEE
Confidence 555554
No 240
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.4e-20 Score=185.62 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=134.3
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++|+++.|+ ++.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ .. ..
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i----~~---~~ 75 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS---ILGQPT----RQ---AL 75 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEh----HH---hh
Confidence 588999999995 578999999999 9999999999999999955 46789999 888732 11 11
Q ss_pred ccccEEEEeCCCcccc--ccccccCCCcccceecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 150 RQYPWGVVEGSTVLTP--SLIGSLFQTDRDYIGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~--~lig~~~qtv~e~l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.+..++|++|+..+.+ .. ++.+++.++.... . .........+..+++.+|+.+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--------------- 134 (272)
T PRK15056 76 QKNLVAYVPQSEEVDWSFPV------LVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE--------------- 134 (272)
T ss_pred ccceEEEeccccccccCCCc------chhhheecccccccccccCCCHHHHHHHHHHHHHcCChh---------------
Confidence 2345899999876532 23 5677776542110 0 011112223344444444432
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 135 ----------------------------------------------------------------~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 135 ----------------------------------------------------------------FRHRQIGELSGGQKKR 150 (272)
T ss_pred ----------------------------------------------------------------HhcCCcccCCHHHHHH
Confidence 1233456789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|.+..... .+.++|.+..+.++++++.+|+.+... .++.++
T Consensus 151 v~laraL~~------~p~llllDEPt~~LD~~~~~-----------~l~~~L~~~~~~g~tviivsH~~~~~~-~~~d~v 212 (272)
T PRK15056 151 VFLARAIAQ------QGQVILLDEPFTGVDVKTEA-----------RIISLLRELRDEGKTMLVSTHNLGSVT-EFCDYT 212 (272)
T ss_pred HHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEE
Confidence 999999998 99999999998887665553 666777766555788999999986443 234444
Q ss_pred EEE
Q psy91 384 TVV 386 (541)
Q Consensus 384 nvI 386 (541)
.++
T Consensus 213 ~~~ 215 (272)
T PRK15056 213 VMV 215 (272)
T ss_pred EEE
Confidence 333
No 241
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.80 E-value=2e-20 Score=225.27 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=145.3
Q ss_pred CCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
...|+++||++.|+ ++.+|+|+|+++ +|+|||||||||||++|+| .|++|+|+ ++|..+ ...
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~---i~G~dI----~~~- 997 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL---VGGKDI----ETN- 997 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEE---ECCEEC----cch-
Confidence 35799999999995 578999999998 9999999999999999955 57899999 888733 211
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....++.+||++|++.+++.+ ||+|++.|.....+....+..+++..+++.+|+.+
T Consensus 998 ~~~~r~~IG~~pQ~~~L~~~L------TV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~------------------ 1053 (2272)
T TIGR01257 998 LDAVRQSLGMCPQHNILFHHL------TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH------------------ 1053 (2272)
T ss_pred HHHHhhcEEEEecCCcCCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch------------------
Confidence 223345799999999999999 99999988622223333344456677777777643
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|+++|
T Consensus 1054 -------------------------------------------------------------~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1054 -------------------------------------------------------------KRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred -------------------------------------------------------------hhcCChhhCCHHHHHHHHH
Confidence 1233456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
+++++. +++++|+|||+.|-+..... .+.+.|.+.. .++++++.+|+++..+
T Consensus 1073 ArALi~------~PkVLLLDEPTSGLDp~sr~-----------~l~~lL~~l~-~g~TIIltTHdmdea~ 1124 (2272)
T TIGR01257 1073 AIAFVG------DAKVVVLDEPTSGVDPYSRR-----------SIWDLLLKYR-SGRTIIMSTHHMDEAD 1124 (2272)
T ss_pred HHHHHc------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHHh-CCCEEEEEECCHHHHH
Confidence 999998 99999999998886655443 5666666663 4889999999987543
No 242
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=2.1e-20 Score=171.39 Aligned_cols=199 Identities=16% Similarity=0.170 Sum_probs=145.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-c
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
..+.+++|+++|++-.+|+++||+| +|||||||||||+|++|.| +|..|+++ +.|. .++...+. +
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~---f~g~---~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL---FDGD---TDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEE---EcCc---hhhccCCHHH
Confidence 4678999999999999999999999 9999999999999999965 46779999 8884 13333221 2
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceecccc-ccc-------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQ-------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~-------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
..+..+|--||.+..|..+ ||+||+.++.- .+. ....+..++++++|+..||...+
T Consensus 78 IAr~GIGRKFQ~PtVfe~l------tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~---------- 141 (249)
T COG4674 78 IARAGIGRKFQKPTVFENL------TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER---------- 141 (249)
T ss_pred HHHhccCccccCCeehhhc------cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh----------
Confidence 3345789999999999999 99999998721 111 11233455778888888776521
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
+.....+|.|+
T Consensus 142 ---------------------------------------------------------------------~~~A~~LSHGq 152 (249)
T COG4674 142 ---------------------------------------------------------------------DRLAALLSHGQ 152 (249)
T ss_pred ---------------------------------------------------------------------hhhhhhhccch
Confidence 22234578999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|+++|..-++. +|+|+++|||-.|....... +.-+.|... ....++++..|++.+.. .+.
T Consensus 153 KQwLEIGMll~Q------~P~lLLlDEPvAGMTd~Et~-----------~taeLl~~l-a~~hsilVVEHDM~Fvr-~~A 213 (249)
T COG4674 153 KQWLEIGMLLAQ------DPKLLLLDEPVAGMTDAETE-----------KTAELLKSL-AGKHSILVVEHDMGFVR-EIA 213 (249)
T ss_pred hhhhhhheeecc------CCcEEEecCccCCCcHHHHH-----------HHHHHHHHH-hcCceEEEEeccHHHHH-Hhh
Confidence 999999999998 99999999998886533322 233333332 34567778888877653 366
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.+|++.
T Consensus 214 ~~VTVl 219 (249)
T COG4674 214 DKVTVL 219 (249)
T ss_pred heeEEE
Confidence 777775
No 243
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.80 E-value=2.8e-20 Score=186.69 Aligned_cols=202 Identities=16% Similarity=0.163 Sum_probs=139.0
Q ss_pred ceeeeccccccc---------ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceec
Q psy91 79 YIGFATLPEQVH---------RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 79 ~i~~~~l~~~~~---------~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~ 141 (541)
.|.++||++.|+ ++.+|+|+||+| +|+|||||||||||++|+| .+.+|+|. ++|..+..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~---~~g~~~~~- 78 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVS---WRGEPLAK- 78 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEeccc-
Confidence 478999999997 478999999999 9999999999999999955 47789999 88873211
Q ss_pred ccccccccccccEEEEeCCC--ccccccccccCCCcccceeccccc-cchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 142 VAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLP-EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~-~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
.........++.++|++|+. .+++.. ++.+++.+.... ..........++..+++.+|+..
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------- 142 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRK------TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD---------- 142 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhccCCCC------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------
Confidence 11111112345799999997 355667 888887553100 01112222334555555555431
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
...+..+..+|+
T Consensus 143 --------------------------------------------------------------------~~~~~~~~~LS~ 154 (268)
T PRK10419 143 --------------------------------------------------------------------SVLDKRPPQLSG 154 (268)
T ss_pred --------------------------------------------------------------------hHhhCCCccCCh
Confidence 011234556899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~ 377 (541)
|++|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+. +.++++.+|+.+...
T Consensus 155 Ge~qrl~laral~~------~p~lllLDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~~tiiivsH~~~~i~- 216 (268)
T PRK10419 155 GQLQRVCLARALAV------EPKLLILDEAVSNLDLVLQA-----------GVIRLLKKLQQQFGTACLFITHDLRLVE- 216 (268)
T ss_pred HHHHHHHHHHHHhc------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHHHHcCcEEEEEECCHHHHH-
Confidence 99999999999999 99999999998886655443 566777766554 788999999877443
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
.++.++.++
T Consensus 217 ~~~d~i~~l 225 (268)
T PRK10419 217 RFCQRVMVM 225 (268)
T ss_pred HhCCEEEEE
Confidence 344565555
No 244
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.80 E-value=2.1e-20 Score=184.29 Aligned_cols=198 Identities=18% Similarity=0.210 Sum_probs=135.8
Q ss_pred eeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 80 IGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 80 i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.++|+++.|++ +.+|+++||++ +|+|||||||||||++|+| .+.+|+|. ++|..+ ......
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~----~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL---LDGVDI----RDLNLR 73 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEE---ECCEeh----hhcCHH
Confidence 467899999964 46999999999 9999999999999999955 46789999 888732 111111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++|++|+..+++ . |+.+|+.++..... . ..+...+...++..
T Consensus 74 ~~~~~i~~~~q~~~~~~-~------tv~e~l~~~~~~~~--~----~~~~~~~~~~~~~~-------------------- 120 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-G------TIAENIRYGKPDAT--D----EEVEEAAKKANIHD-------------------- 120 (238)
T ss_pred HHHhhEEEECCchhhhh-h------hHHHHhhccCCCCC--H----HHHHHHHHHcChHH--------------------
Confidence 23456999999987764 6 89999987622111 0 11222222222211
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcceEE
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
++..+ .... ..+..+..+|+|++|++.|
T Consensus 121 -------------------------------------------------~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~l 150 (238)
T cd03249 121 -------------------------------------------------FIMSLPDGYDT-LVGERGSQLSGGQKQRIAI 150 (238)
T ss_pred -------------------------------------------------HHHhhccccce-eeccCCccCCHHHHHHHHH
Confidence 00100 0000 1233456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||..|-+..... .+.++|.+.. .++++++.+|+.+... .+.++.++
T Consensus 151 a~al~~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~-~g~~vi~~sh~~~~~~--~~d~v~~l 210 (238)
T cd03249 151 ARALLR------NPKILLLDEATSALDAESEK-----------LVQEALDRAM-KGRTTIVIAHRLSTIR--NADLIAVL 210 (238)
T ss_pred HHHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEeCCHHHHh--hCCEEEEE
Confidence 999998 99999999998887665553 6667776665 5788999999887653 46677666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 211 ~ 211 (238)
T cd03249 211 Q 211 (238)
T ss_pred E
Confidence 3
No 245
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=1.8e-20 Score=205.73 Aligned_cols=204 Identities=17% Similarity=0.136 Sum_probs=145.3
Q ss_pred Cceeeeccccccc-----------ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccce
Q psy91 78 DYIGFATLPEQVH-----------RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTV 139 (541)
Q Consensus 78 ~~i~~~~l~~~~~-----------~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~ 139 (541)
+.+.++|+++.|+ ++.+|++|||+| ||+|||||||||||++|++. +.+|+|+ ++|..+.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~---~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIW---FDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEE---ECCEEcc
Confidence 4689999999995 357999999999 99999999999999999553 4789999 8887331
Q ss_pred ecccccccccccccEEEEeCCC--ccccccccccCCCcccceecccccc--chhhHhHhhhHHHHHHHhCCCCccchhhh
Q psy91 140 IEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLGKSTLV 215 (541)
Q Consensus 140 ~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~--~~~~~e~~~~v~~~L~~vGL~g~~ks~l~ 215 (541)
. .+......+++.++||+|+. .+++.+ ||.+|+.++.... .....+..+++..+++.+|+..
T Consensus 351 ~-~~~~~~~~~~~~i~~v~q~~~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------- 416 (529)
T PRK15134 351 N-LNRRQLLPVRHRIQVVFQDPNSSLNPRL------NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP------- 416 (529)
T ss_pred c-cchhhHHHhhhceEEEEeCchhhcCCcc------cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH-------
Confidence 1 11111112245699999996 478888 9999998752111 1122223344555666655531
Q ss_pred hhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCC
Q psy91 216 NSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 295 (541)
Q Consensus 216 ~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ 295 (541)
...++.+..
T Consensus 417 -----------------------------------------------------------------------~~~~~~~~~ 425 (529)
T PRK15134 417 -----------------------------------------------------------------------ETRHRYPAE 425 (529)
T ss_pred -----------------------------------------------------------------------HHHhcCCcc
Confidence 012334667
Q ss_pred CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchh
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDI 374 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di 374 (541)
+|+|++|++.|+++++. +++++|+|||+.|-+..+.. .+.+.|.+..+. +.++++.+|+++.
T Consensus 426 LSgG~~qrv~la~al~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 426 FSGGQRQRIAIARALIL------KPSLIILDEPTSSLDKTVQA-----------QILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred CCHHHHHHHHHHHHHhC------CCCEEEeeCCccccCHHHHH-----------HHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 99999999999999998 99999999998886655543 666777776554 7889999999875
Q ss_pred hhhcccceeEEEc
Q psy91 375 EERGVKLRLTVVD 387 (541)
Q Consensus 375 ~~~~l~~rvnvIp 387 (541)
.. .++.++.++.
T Consensus 489 ~~-~~~d~i~~l~ 500 (529)
T PRK15134 489 VR-ALCHQVIVLR 500 (529)
T ss_pred HH-HhcCeEEEEE
Confidence 43 3556666663
No 246
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.2e-20 Score=185.57 Aligned_cols=202 Identities=16% Similarity=0.142 Sum_probs=139.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
-.++|+++.|+++.+|+++||+| +|+||||||||||+++|+|. +..|+|. ++|..+.. .. ..
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~---~~g~~i~~-~~-~~ 80 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD---IDGIDVYS-VD-TN 80 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEE---ECCEehHh-cc-cc
Confidence 36889999998889999999999 99999999999999999664 2589999 88873211 00 11
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccch--hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV--HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~--~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
....++.++||+|+..+++ . |+.+|+.++...... ......+.+..+++.+|+...-.
T Consensus 81 ~~~~~~~i~~v~q~~~~~~-~------tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------- 140 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFP-K------SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG------------- 140 (251)
T ss_pred hHHHhhhEEEEecCccccc-C------CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------------
Confidence 1123457999999987765 5 888998775211111 11222334556666666643100
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ ..+..+..+|+|++|++
T Consensus 141 ----------------------------------------------------~----------~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 141 ----------------------------------------------------D----------RLKDSAFELSGGQQQRL 158 (251)
T ss_pred ----------------------------------------------------h----------HhhcChhhCCHHHHHHH
Confidence 0 01223456899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ ++++++.+|+.+... .+..++.
T Consensus 159 ~laral~~------~p~llllDEPt~~LD~~~~~-----------~l~~~l~~~~~-~~tiiiisH~~~~~~-~~~d~i~ 219 (251)
T PRK14244 159 CIARAIAV------KPTMLLMDEPCSALDPVATN-----------VIENLIQELKK-NFTIIVVTHSMKQAK-KVSDRVA 219 (251)
T ss_pred HHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-hhcCEEE
Confidence 99999998 99999999998887665543 56666766543 788999999877433 3455666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 220 ~l~ 222 (251)
T PRK14244 220 FFQ 222 (251)
T ss_pred EEE
Confidence 654
No 247
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=3.4e-20 Score=180.61 Aligned_cols=199 Identities=17% Similarity=0.146 Sum_probs=136.8
Q ss_pred ceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.++|++++|++ +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|.. +......
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~----~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL---IDGVD----ISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE---ECCEE----hHhCCHH
Confidence 3789999999964 47999999999 9999999999999999955 57789999 88873 2222222
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++.++|++|+..+++ . |+.||+.+... .. ...+..+++.+|+.+..+.. ..++
T Consensus 75 ~~~~~i~~~~q~~~l~~-~------tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l----~~~l------- 129 (221)
T cd03244 75 DLRSRISIIPQDPVLFS-G------TIRSNLDPFGE---YS----DEELWQALERVGLKEFVESL----PGGL------- 129 (221)
T ss_pred HHhhhEEEECCCCcccc-c------hHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhc----cccc-------
Confidence 34567999999987653 5 89999875411 11 12344455555553210000 0000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.. ..+..+..+|+|++|++.|++
T Consensus 130 --------------------------------------------------------~~-~~~~~~~~LS~G~~qr~~lar 152 (221)
T cd03244 130 --------------------------------------------------------DT-VVEEGGENLSVGQRQLLCLAR 152 (221)
T ss_pred --------------------------------------------------------cc-ccccCCCcCCHHHHHHHHHHH
Confidence 00 112345679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|.+..... .+.++|.+..+ +.++++.+|+.+.... ..++.++
T Consensus 153 al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~i~~l 210 (221)
T cd03244 153 ALLR------KSKILVLDEATASVDPETDA-----------LIQKTIREAFK-DCTVLTIAHRLDTIID--SDRILVL 210 (221)
T ss_pred HHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEeCCHHHHhh--CCEEEEE
Confidence 9998 99999999998876655543 56666665543 5788889998876543 4555555
No 248
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.80 E-value=1.8e-20 Score=225.63 Aligned_cols=199 Identities=17% Similarity=0.204 Sum_probs=151.1
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
..|.++||++.|++ +.+|++|||.| ||+|||||||||||++|+| .+++|+|+ ++|..+ ... .
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~---i~G~~i----~~~-~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT---VAGKSI----LTN-I 2007 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE---ECCEEC----cch-H
Confidence 46899999999986 57999999999 9999999999999999955 57899999 888733 111 1
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+||++|++.+++.+ |++|++.+.....+.+.++..+.++.+++.+|+..
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~L------Tv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~------------------- 2062 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLL------TGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL------------------- 2062 (2272)
T ss_pred HHHhhhEEEEeccccCCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-------------------
Confidence 22345799999999999999 99999987422223333344455666677666643
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 2063 ------------------------------------------------------------~~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2063 ------------------------------------------------------------YADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred ------------------------------------------------------------HhcCChhhCCHHHHHHHHHH
Confidence 22344567899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++++|||..|-+..... .+.+.+.+..+.++++++.+|+++..+ .++.++.++.
T Consensus 2083 ~ALi~------~P~VLLLDEPTsGLDp~sr~-----------~l~~lL~~l~~~g~TIILtTH~mee~e-~lcDrV~IL~ 2144 (2272)
T TIGR01257 2083 IALIG------CPPLVLLDEPTTGMDPQARR-----------MLWNTIVSIIREGRAVVLTSHSMEECE-ALCTRLAIMV 2144 (2272)
T ss_pred HHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998887655543 566666666556889999999987443 4667776663
No 249
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.5e-20 Score=176.64 Aligned_cols=204 Identities=15% Similarity=0.186 Sum_probs=141.6
Q ss_pred CCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 75 TDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+++.|.++|+++.|+++.||++||.+| +|+|||||||||||+++++ .+.+|.+. +.|+ ......
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~---~~G~----~~G~~~ 99 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT---LLGR----RFGKGE 99 (257)
T ss_pred CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCcee---eeee----eccCCc
Confidence 4456899999999999999999999999 9999999999999999944 45568887 7776 222222
Q ss_pred c-ccccccEEEEeCC--CccccccccccCCCcccceecccc-----ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 147 V-RGRQYPWGVVEGS--TVLTPSLIGSLFQTDRDYIGFATL-----PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 147 ~-~~~~~~~g~V~Q~--~~l~~~lig~~~qtv~e~l~~~~~-----~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
. ...++.+|+|.-. ..+.+.. +|+|.|.=+.. ......++..+++..+++.+|+.+
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~------~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~---------- 163 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRE------TVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH---------- 163 (257)
T ss_pred chHHHHHHhCccCHHHHhhccccc------ccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh----------
Confidence 2 4567789998643 2233334 56665543311 010122334444555555555543
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
+.++....+|.
T Consensus 164 ---------------------------------------------------------------------la~r~~~~LS~ 174 (257)
T COG1119 164 ---------------------------------------------------------------------LADRPFGSLSQ 174 (257)
T ss_pred ---------------------------------------------------------------------hccCchhhcCH
Confidence 44556677899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc--Ccceeeccccchhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ--GKTTTIEKKSMDIEE 376 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~--~rt~~i~~~~~di~~ 376 (541)
|+++++-|+++++. +|+|+|+|||..|-+.-+.+ ++.++|.+.... ..++++++|..+-..
T Consensus 175 Ge~rrvLiaRALv~------~P~LLiLDEP~~GLDl~~re-----------~ll~~l~~~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 175 GEQRRVLIARALVK------DPELLILDEPAQGLDLIARE-----------QLLNRLEELAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred hHHHHHHHHHHHhc------CCCEEEecCccccCChHHHH-----------HHHHHHHHHhcCCCCceEEEEEcchhhcc
Confidence 99999999999999 99999999997775543332 677777776544 556777777766445
Q ss_pred hcccceeEEEc
Q psy91 377 RGVKLRLTVVD 387 (541)
Q Consensus 377 ~~l~~rvnvIp 387 (541)
.+++.++-+.+
T Consensus 238 ~~~th~lll~~ 248 (257)
T COG1119 238 PCFTHRLLLKE 248 (257)
T ss_pred cccceEEEeeC
Confidence 67777776664
No 250
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.80 E-value=2.4e-20 Score=202.94 Aligned_cols=197 Identities=16% Similarity=0.082 Sum_probs=135.1
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++|+++.|+++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ........
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~---~~~~~~----~~~~~~~~ 75 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ---SQFSHI----TRLSFEQL 75 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE---ECCccc----ccCCHHHH
Confidence 478999999999888999999999 9999999999999999965 46789998 777522 11111122
Q ss_pred cccEEEEeCCCccc--cccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 151 QYPWGVVEGSTVLT--PSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~--~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
++.++|++|+..+. .........++.+++.++ ....+++..+++.+|+.+
T Consensus 76 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~-------------------- 127 (490)
T PRK10938 76 QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITA-------------------- 127 (490)
T ss_pred HHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHh--------------------
Confidence 34589999975431 000000011566655432 112234455555555532
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+.++.+..+|+|++|++.|++
T Consensus 128 -----------------------------------------------------------~~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 128 -----------------------------------------------------------LLDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred -----------------------------------------------------------hhhCCcccCCHHHHHHHHHHH
Confidence 224456779999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|.+..... ++.++|.+..+.+.++++.+|+++... .++.++.++.
T Consensus 149 al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tvii~tH~~~~~~-~~~d~v~~l~ 209 (490)
T PRK10938 149 ALMS------EPDLLILDEPFDGLDVASRQ-----------QLAELLASLHQSGITLVLVLNRFDEIP-DFVQFAGVLA 209 (490)
T ss_pred HHHc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhcCCeEEEEeCCHHHHH-hhCCEEEEEE
Confidence 9998 99999999998876655443 667777766556789999999877543 4555655553
No 251
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.80 E-value=2.5e-20 Score=207.32 Aligned_cols=202 Identities=22% Similarity=0.236 Sum_probs=140.3
Q ss_pred Cceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|.++||++.| +++++|+|+||+| ||+||||||||||+++|++. |.+|+|. ++|. ++.......
T Consensus 348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~---i~g~----~i~~~~~~~ 420 (588)
T PRK11174 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLK---INGI----ELRELDPES 420 (588)
T ss_pred ceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEE---ECCE----ecccCCHHH
Confidence 359999999655 5678999999999 99999999999999999332 7789999 8887 333333445
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++||+|++.+|. - |++||+.+++ + ..+ .+.+.++++..|+... +..+ +
T Consensus 421 lr~~i~~v~Q~~~LF~-~------TI~eNI~~g~-~-~~~----~eei~~al~~a~l~~~--------i~~l--p----- 472 (588)
T PRK11174 421 WRKHLSWVGQNPQLPH-G------TLRDNVLLGN-P-DAS----DEQLQQALENAWVSEF--------LPLL--P----- 472 (588)
T ss_pred HHhheEEecCCCcCCC-c------CHHHHhhcCC-C-CCC----HHHHHHHHHHhCHHHH--------HHhc--c-----
Confidence 5678999999999884 3 8999999983 1 112 2345555666665431 1100 0
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+|.+- .+|+. -..+||||+||++|+|+
T Consensus 473 -----------------------------~G~dT---~vge~---------------------G~~LSGGQrQRialARA 499 (588)
T PRK11174 473 -----------------------------QGLDT---PIGDQ---------------------AAGLSVGQAQRLALARA 499 (588)
T ss_pred -----------------------------ccccc---ccccC---------------------CCCCCHHHHHHHHHHHH
Confidence 00000 11222 23589999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.+. +++++|+|||+.+-+..++. ++.+.|.+. ..++|+++.+|.+.... ...++.+++
T Consensus 500 ll~------~~~IliLDE~TSaLD~~te~-----------~i~~~l~~~-~~~~TvIiItHrl~~i~--~aD~Iivl~ 557 (588)
T PRK11174 500 LLQ------PCQLLLLDEPTASLDAHSEQ-----------LVMQALNAA-SRRQTTLMVTHQLEDLA--QWDQIWVMQ 557 (588)
T ss_pred Hhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHH-hCCCEEEEEecChHHHH--hCCEEEEEe
Confidence 999 99999999997765555443 444445443 34789999999875433 356666664
No 252
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.80 E-value=3.3e-20 Score=184.25 Aligned_cols=183 Identities=16% Similarity=0.215 Sum_probs=129.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~---~~~~------------- 66 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---RNGK------------- 66 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCc-------------
Confidence 4689999999999888999999999 99999999999999999664 5677776 5432
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
..++|++|+..+++.+ ..++.+++.+. ... ..+.+..+++.+|+..
T Consensus 67 --~~i~~v~q~~~~~~~l----~~~~~~~~~~~---~~~----~~~~~~~~l~~~gl~~--------------------- 112 (251)
T PRK09544 67 --LRIGYVPQKLYLDTTL----PLTVNRFLRLR---PGT----KKEDILPALKRVQAGH--------------------- 112 (251)
T ss_pred --cCEEEecccccccccc----ChhHHHHHhcc---ccc----cHHHHHHHHHHcCChH---------------------
Confidence 2589999998776543 01455544332 011 1122344455555422
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.+..+..+|+|++|++.|+++
T Consensus 113 ----------------------------------------------------------~~~~~~~~LSgGq~qrv~lara 134 (251)
T PRK09544 113 ----------------------------------------------------------LIDAPMQKLSGGETQRVLLARA 134 (251)
T ss_pred ----------------------------------------------------------HHhCChhhCCHHHHHHHHHHHH
Confidence 1122345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|.+..... .+.+.|.+..+. +.++++.+|+.+... .+..++.++
T Consensus 135 l~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~g~tiiivsH~~~~i~-~~~d~i~~l 194 (251)
T PRK09544 135 LLN------RPQLLVLDEPTQGVDVNGQV-----------ALYDLIDQLRRELDCAVLMVSHDLHLVM-AKTDEVLCL 194 (251)
T ss_pred Hhc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 998 99999999998886655443 566667666544 788999999987543 244555555
No 253
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.8e-20 Score=183.61 Aligned_cols=205 Identities=12% Similarity=0.024 Sum_probs=144.8
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~ 142 (541)
.++.+.++++++.|+++.+|+++||+| +|+||||||||||+++|+|.. .+|+|+ ++|+.+.. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~---~~g~~i~~-~ 80 (261)
T PRK14263 5 APIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVH---FLGQDVYG-K 80 (261)
T ss_pred CCceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEE---ECCEeccc-c
Confidence 345788999999999989999999999 999999999999999996542 589999 88873211 0
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
. ......++.++|++|+..++ .+ |+.||+.++...... .......+..+++.+|+......
T Consensus 81 ~-~~~~~~~~~i~~v~q~~~~~-~~------tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~---------- 141 (261)
T PRK14263 81 G-VDPVVVRRYIGMVFQQPNPF-SM------SIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKD---------- 141 (261)
T ss_pred c-cchHhhhhceEEEecCCccc-cc------cHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhh----------
Confidence 0 11123345799999998877 47 999999876321111 12233456666766665321000
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
..+..+..+|+|++|
T Consensus 142 -----------------------------------------------------------------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 142 -----------------------------------------------------------------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred -----------------------------------------------------------------hhhCCcccCCHHHHH
Confidence 001234468999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..... .+.++|.+..+ ++++++.+|+++... .+..+
T Consensus 157 rv~laral~~------~p~llllDEPtsgLD~~~~~-----------~l~~~l~~~~~-~~tii~isH~~~~i~-~~~d~ 217 (261)
T PRK14263 157 RLCIARAIAT------EPEVLLLDEPCSALDPIATR-----------RVEELMVELKK-DYTIALVTHNMQQAI-RVADT 217 (261)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEeCCHHHHH-HhCCE
Confidence 9999999998 99999999998887665553 56666666543 578889999877433 46667
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 218 v~~l~ 222 (261)
T PRK14263 218 TAFFS 222 (261)
T ss_pred EEEEe
Confidence 77763
No 254
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.80 E-value=3e-20 Score=174.23 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=121.0
Q ss_pred eeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
++++|++++|++ +.+++++||++ +|+|||||||||||++|++ .+.+|+|. ++|..+ .......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR---LDGADI----SQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE---ECCEEc----ccCCHHH
Confidence 468899999975 56999999999 9999999999999999955 56789999 888732 2211223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+++.++|++|+..+++ . |+++|+
T Consensus 74 ~~~~i~~~~q~~~~~~-~------tv~~~l-------------------------------------------------- 96 (173)
T cd03246 74 LGDHVGYLPQDDELFS-G------SIAENI-------------------------------------------------- 96 (173)
T ss_pred HHhheEEECCCCcccc-C------cHHHHC--------------------------------------------------
Confidence 3457899999876554 4 666654
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+|+|++|++.|+++
T Consensus 97 ------------------------------------------------------------------LS~G~~qrv~la~a 110 (173)
T cd03246 97 ------------------------------------------------------------------LSGGQRQRLGLARA 110 (173)
T ss_pred ------------------------------------------------------------------cCHHHHHHHHHHHH
Confidence 67889999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... ++.+.|.+..+.++++++.+|+.+... ...++.++
T Consensus 111 l~~------~p~~lllDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~tii~~sh~~~~~~--~~d~v~~l 168 (173)
T cd03246 111 LYG------NPRILVLDEPNSHLDVEGER-----------ALNQAIAALKAAGATRIVIAHRPETLA--SADRILVL 168 (173)
T ss_pred Hhc------CCCEEEEECCccccCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH--hCCEEEEE
Confidence 998 99999999998876655543 566667666555789999999987542 46666665
No 255
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.80 E-value=3.3e-20 Score=210.66 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=142.5
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|++ +++|+|+||+| ||+||||||||||+++|+| .|..|+|. ++|. ++.....
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~---idg~----~i~~~~~ 548 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL---FDGI----PREEIPR 548 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCE----eHHHCCH
Confidence 46899999999974 57999999999 9999999999999999944 67889999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+|. - |++||+.++. + .. ..+.+.++++.+|+...-.+. =.|++.
T Consensus 549 ~~lr~~i~~v~Q~~~lf~-g------Ti~eNi~l~~-~-~~----~~~~i~~al~~~~l~~~i~~l----p~gl~t---- 607 (710)
T TIGR03796 549 EVLANSVAMVDQDIFLFE-G------TVRDNLTLWD-P-TI----PDADLVRACKDAAIHDVITSR----PGGYDA---- 607 (710)
T ss_pred HHHHhheeEEecCChhhh-c------cHHHHhhCCC-C-CC----CHHHHHHHHHHhCCHHHHHhC----cCcccc----
Confidence 456678999999998883 3 8999999872 1 11 123455566666664311100 000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+. -..+||||+|+++|+
T Consensus 608 ---------------------------------------~i~e~---------------------G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 608 ---------------------------------------ELAEG---------------------GANLSGGQRQRLEIA 627 (710)
T ss_pred ---------------------------------------eeccC---------------------CCCCCHHHHHHHHHH
Confidence 01111 235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+.+. +++++|+|||+.+-+..++. ++.+.|.+ .++|+++.+|.++... ...++.+++
T Consensus 628 Rall~------~p~iliLDEptS~LD~~te~-----------~i~~~l~~---~~~T~IiitHrl~~i~--~~D~Iivl~ 685 (710)
T TIGR03796 628 RALVR------NPSILILDEATSALDPETEK-----------IIDDNLRR---RGCTCIIVAHRLSTIR--DCDEIIVLE 685 (710)
T ss_pred HHHhh------CCCEEEEECccccCCHHHHH-----------HHHHHHHh---cCCEEEEEecCHHHHH--hCCEEEEEe
Confidence 99999 99999999998775554443 55555553 4789999999876543 356666664
No 256
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.8e-20 Score=183.09 Aligned_cols=202 Identities=15% Similarity=0.126 Sum_probs=141.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----C---CCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----D---LYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~---~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. + ++|+|. ++|..+.. ...
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~---~~g~~i~~--~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY---LDGVDIYD--PAV 77 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE---ECCEEccc--ccc
Confidence 478999999999888999999999 99999999999999999653 2 679999 88873211 001
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.....++.++|++|+..+++ . |+.+|+.++...... ......+++..+++.+|+...
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~------t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------- 135 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFP-K------SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDE--------------- 135 (250)
T ss_pred cHHHHhhheEEEecCCccCc-c------hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchh---------------
Confidence 11233457999999988775 5 899999875211111 122234456666776666321
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+.. ..+..+..+|+|++|++
T Consensus 136 ------------------------------------------------------l~~------~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 136 ------------------------------------------------------VKD------KLDKSALGLSGGQQQRL 155 (250)
T ss_pred ------------------------------------------------------HHH------HHhCCcccCCHHHHHHH
Confidence 000 01223556899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
.|+++++. +++++++|||..|-+..... .+.+.|.+..+ +.++++.+|+.+... .+..++.
T Consensus 156 ~laral~~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~~-~~tiii~sh~~~~~~-~~~~~i~ 216 (250)
T PRK14266 156 CIARTIAV------SPEVILMDEPCSALDPISTT-----------KIEDLIHKLKE-DYTIVIVTHNMQQAT-RVSKYTS 216 (250)
T ss_pred HHHHHHHc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHhc-CCeEEEEECCHHHHH-hhcCEEE
Confidence 99999998 99999999998887665443 56666666543 678899999877443 3455555
Q ss_pred EE
Q psy91 385 VV 386 (541)
Q Consensus 385 vI 386 (541)
++
T Consensus 217 ~l 218 (250)
T PRK14266 217 FF 218 (250)
T ss_pred EE
Confidence 55
No 257
>KOG0055|consensus
Probab=99.79 E-value=2.1e-20 Score=211.76 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=134.1
Q ss_pred CCCCceeeecccccccccc---eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc
Q psy91 75 TDRDYIGFATLPEQVHRKS---VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~---iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
...+.|+|+||+++|+.++ ||+|+||.| ||||||||||||++.+| +..|..|+|+ ++|. ++.
T Consensus 346 ~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~---idG~----di~ 418 (1228)
T KOG0055|consen 346 SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVL---IDGE----DIR 418 (1228)
T ss_pred ccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEE---EcCc----cch
Confidence 3557899999999998774 999999999 99999999999999999 7789999999 8887 443
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+..+..+|.|+|++.||. . |++||+.|++-. .+.+ .+.++....+... .+.+.-.|++.
T Consensus 419 ~~~~~~lr~~iglV~QePvlF~-~------tI~eNI~~G~~d--at~~----~i~~a~k~ana~~----fi~~lp~g~~T 481 (1228)
T KOG0055|consen 419 NLNLKWLRSQIGLVSQEPVLFA-T------TIRENIRYGKPD--ATRE----EIEEAAKAANAHD----FILKLPDGYDT 481 (1228)
T ss_pred hcchHHHHhhcCeeeechhhhc-c------cHHHHHhcCCCc--ccHH----HHHHHHHHccHHH----HHHhhHHhhcc
Confidence 4445566778999999998774 4 899999999422 1122 2222222222211 11111111110
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.+|+. -..+||||+||
T Consensus 482 -------------------------------------------~vge~---------------------g~qLSGGQKQR 497 (1228)
T KOG0055|consen 482 -------------------------------------------LVGER---------------------GVQLSGGQKQR 497 (1228)
T ss_pred -------------------------------------------cccCC---------------------CCCCChHHHHH
Confidence 01221 23499999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
++|+++++. +|+++++|||+.+.+...+ ...+-.-+....+||+++..|.+.
T Consensus 498 IAIARalv~------~P~ILLLDEaTSaLD~~se------------~~Vq~ALd~~~~grTTivVaHRLS 549 (1228)
T KOG0055|consen 498 IAIARALVR------NPKILLLDEATSALDAESE------------RVVQEALDKASKGRTTIVVAHRLS 549 (1228)
T ss_pred HHHHHHHHh------CCCEEEecCcccccCHHHH------------HHHHHHHHHhhcCCeEEEEeeehh
Confidence 999999999 9999999999666544333 222222234567889999888765
No 258
>KOG0057|consensus
Probab=99.79 E-value=4.2e-20 Score=192.62 Aligned_cols=193 Identities=20% Similarity=0.268 Sum_probs=136.5
Q ss_pred Cceeeecccccccccc-eeecceEEE------EEEcCCCCCHHHHHHHHhc-CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKS-VKKGFDFTL------MVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~-iL~~isl~i------aIiGpSGsGKSTLL~~L~~-~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|+|+||++.|+.++ +|+++||+| ||+|+|||||||+||+|+. ...+|+|+ ++|. ++.....+.
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~---IdG~----dik~~~~~S 422 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSIL---IDGQ----DIKEVSLES 422 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEE---ECCe----eHhhhChHH
Confidence 4699999999999887 999999999 9999999999999999922 23899999 8998 444444556
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+||||||..||.. |+.+|+.+|+... +.+ .+-++.+..|+.+ .+..+..
T Consensus 423 lR~~Ig~VPQd~~LFnd-------TIl~NI~YGn~sa--s~e----eV~e~~k~a~~hd--------~i~~l~~------ 475 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFND-------TILYNIKYGNPSA--SDE----EVVEACKRAGLHD--------VISRLPD------ 475 (591)
T ss_pred hhhheeEeCCcccccch-------hHHHHhhcCCCCc--CHH----HHHHHHHHcCcHH--------HHHhccc------
Confidence 67789999999999854 7999999995332 222 2333334444432 1111100
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
||.+ .||+.| ..+|||++|+++++++
T Consensus 476 --------------GY~T-------------------~VGerG---------------------~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 476 --------------GYQT-------------------LVGERG---------------------LMLSGGEKQRVSLARA 501 (591)
T ss_pred --------------cchh-------------------hHhhcc---------------------cccccchHHHHHHHHH
Confidence 1111 134444 2479999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
.+. ++.++++|||+.-.+...+. .+.+++.. .-.+||+++..|+++...
T Consensus 502 ~lK------da~Il~~DEaTS~LD~~TE~-----------~i~~~i~~-~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 502 FLK------DAPILLLDEATSALDSETER-----------EILDMIMD-VMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred Hhc------CCCeEEecCcccccchhhHH-----------HHHHHHHH-hcCCCeEEEEEecchhHh
Confidence 999 99999999996644433332 23333333 345899999999988765
No 259
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=5.7e-20 Score=207.88 Aligned_cols=199 Identities=17% Similarity=0.133 Sum_probs=141.6
Q ss_pred Cceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|+ ++++|+|+||+| ||+||||||||||+++|++ .|.+|+|. ++|. ++.....
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~---idg~----~i~~~~~ 522 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF---YDGQ----DLAGLDV 522 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE---ECCE----EcCcCCH
Confidence 4699999999995 357999999999 9999999999999999944 57789999 8887 3333334
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+|+ - |++||+.+++ + .+ .+.+..+++.+|+...-.+.. .|++.
T Consensus 523 ~~lr~~i~~v~Q~~~lf~-g------TI~eNi~~~~-~--~~----~e~i~~al~~a~l~~~i~~lp----~G~dt---- 580 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMS-G------SIFENIAGGA-P--LT----LDEAWEAARMAGLAEDIRAMP----MGMHT---- 580 (686)
T ss_pred HHHHhccEEEccCCccCc-c------cHHHHHhcCC-C--CC----HHHHHHHHHHcCcHHHHHhcc----ccccc----
Confidence 456678999999999884 3 8999999873 2 12 234556677776653111100 00000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+ .-..+|+||+|+++|+
T Consensus 581 ---------------------------------------~ige---------------------~G~~LSGGQrQRialA 600 (686)
T TIGR03797 581 ---------------------------------------VISE---------------------GGGTLSGGQRQRLLIA 600 (686)
T ss_pred ---------------------------------------cccC---------------------CCCCCCHHHHHHHHHH
Confidence 0111 1235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+.+. +++++|+|||+.+-+..++. ++.+.|.+. ++|+++.+|...... ...++.+++
T Consensus 601 RAll~------~p~iLiLDEpTS~LD~~te~-----------~i~~~L~~~---~~T~IiItHr~~~i~--~~D~Iivl~ 658 (686)
T TIGR03797 601 RALVR------KPRILLFDEATSALDNRTQA-----------IVSESLERL---KVTRIVIAHRLSTIR--NADRIYVLD 658 (686)
T ss_pred HHHhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHh---CCeEEEEecChHHHH--cCCEEEEEE
Confidence 99999 99999999998876655543 555555543 478899999875443 356666653
No 260
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.79 E-value=3.2e-20 Score=177.23 Aligned_cols=167 Identities=24% Similarity=0.270 Sum_probs=128.7
Q ss_pred ceeeecccccccc------cceeecceEEE------EEEcCCCCCHHHHHHHHhc----CCCCCCeeecccCCccceecc
Q psy91 79 YIGFATLPEQVHR------KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL----SDLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 79 ~i~~~~l~~~~~~------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~----~~~~G~i~~~~~~G~~~~~~~ 142 (541)
.+.++++++.|++ +.+|+++||+| +|+|||||||||||++|++ .+..|+|. ++|+.+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~---~~g~~~---- 75 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL---INGRPL---- 75 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE---ECCEeC----
Confidence 4789999999976 67999999999 9999999999999999955 56789999 888732
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.. ...++.++|++|+..+++.+ |+.+|+.++. ..
T Consensus 76 ~~---~~~~~~i~~~~q~~~~~~~~------t~~~~i~~~~------------~~------------------------- 109 (194)
T cd03213 76 DK---RSFRKIIGYVPQDDILHPTL------TVRETLMFAA------------KL------------------------- 109 (194)
T ss_pred ch---HhhhheEEEccCcccCCCCC------cHHHHHHHHH------------Hh-------------------------
Confidence 11 13345789999998888888 8888775430 00
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
. .+|+|++|
T Consensus 110 -----------------------------------------------------------------~------~LS~G~~q 118 (194)
T cd03213 110 -----------------------------------------------------------------R------GLSGGERK 118 (194)
T ss_pred -----------------------------------------------------------------c------cCCHHHHH
Confidence 0 47889999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|-+..... .+.+.|.+..+.++++++.+|+.+.+...+..+
T Consensus 119 rv~laral~~------~p~illlDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 119 RVSIALELVS------NPSLLFLDEPTSGLDSSSAL-----------QVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181 (194)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCchHHHHHhcCE
Confidence 9999999998 99999999998876655543 566666666555889999999986333335555
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 182 v~~l 185 (194)
T cd03213 182 LLLL 185 (194)
T ss_pred EEEE
Confidence 5554
No 261
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8.2e-20 Score=183.02 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=139.6
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-------CCCCeeecccCCccceeccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-------LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-------~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.|.++|++++|+++.+|+++||+| +|+|||||||||||++|+|.. .+|+|. ++|..+.....
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~---~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEII---LHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEE---EcCcccccccc
Confidence 45689999999999889999999999 999999999999999996642 578998 77762210000
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhH-hHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRK-SVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~-e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.......++.++|++|+..+++ . |+.+|+.++....+.... ...+.+..+++.+|+.. .
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~-~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~--------- 150 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFP-K------SIFENVAYGLRIRGVKRRSILEERVENALRNAALWD----E--------- 150 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCc-c------hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch----h---------
Confidence 1111233557999999987775 5 899999775211111111 11233444455444321 0
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+.. ..+..+..+|+|++|
T Consensus 151 --------------------------------------------------------l~~------~~~~~~~~LS~G~~q 168 (265)
T PRK14252 151 --------------------------------------------------------VKD------RLGDLAFNLSGGQQQ 168 (265)
T ss_pred --------------------------------------------------------hhH------HHhCCcccCCHHHHH
Confidence 000 112234568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..... .+.++|.+..+ ++++++.+|+.+... .++.+
T Consensus 169 rv~laral~~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~l~~-~~tiiivth~~~~~~-~~~d~ 229 (265)
T PRK14252 169 RLCIARALAT------DPEILLFDEPTSALDPIATA-----------SIEELISDLKN-KVTILIVTHNMQQAA-RVSDY 229 (265)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHh-CCEEEEEecCHHHHH-HhCCE
Confidence 9999999998 99999999998887665543 56666666544 578889999876543 34556
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 230 i~~l~ 234 (265)
T PRK14252 230 TAYMY 234 (265)
T ss_pred EEEEE
Confidence 66653
No 262
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=6.5e-20 Score=204.11 Aligned_cols=201 Identities=14% Similarity=0.126 Sum_probs=143.8
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|++++++++|++ +++|+|+||++ ||+|+||||||||+++|++ .|..|.|. ++|. ++......
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~---idg~----~i~~~~~~ 411 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR---LDGR----PLSSLSHS 411 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE---ECCE----EhhhCCHH
Confidence 46999999999965 57999999999 9999999999999999944 57789999 8887 33333344
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|++.+|+. |+++|+.++. + .. .+.+..+++.+|+...-++ .=.|++..
T Consensus 412 ~l~~~i~~v~Q~~~lF~~-------Ti~~NI~~~~-~--~~----d~~i~~a~~~~gl~~~i~~----lp~Gldt~---- 469 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLAD-------TFLANVTLGR-D--IS----EEQVWQALETVQLAELARS----LPDGLYTP---- 469 (592)
T ss_pred HHHhheEEEccCCccccc-------hHHHHHHhCC-C--CC----HHHHHHHHHHcCcHHHHHh----cccccccc----
Confidence 566789999999999853 8999999983 2 11 2345667777776541111 00011100
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+|+ .-..+|+||+|+++|+|
T Consensus 470 ---------------------------------------i~e---------------------~g~~LSGGqrQRialAR 489 (592)
T PRK10790 470 ---------------------------------------LGE---------------------QGNNLSVGQKQLLALAR 489 (592)
T ss_pred ---------------------------------------ccC---------------------CCCCCCHHHHHHHHHHH
Confidence 011 12358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.+-+..++. ++.+.|.+.. .++|+++.+|...... ...++.+++
T Consensus 490 aLl~------~~~illlDEpts~LD~~t~~-----------~i~~~l~~~~-~~~tvIivtHr~~~l~--~~D~ii~l~ 548 (592)
T PRK10790 490 VLVQ------TPQILILDEATANIDSGTEQ-----------AIQQALAAVR-EHTTLVVIAHRLSTIV--EADTILVLH 548 (592)
T ss_pred HHHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHh-CCCEEEEEecchHHHH--hCCEEEEEE
Confidence 9998 99999999998776655543 5556665543 3688999999875443 345555554
No 263
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=6.9e-20 Score=200.77 Aligned_cols=208 Identities=16% Similarity=0.138 Sum_probs=145.4
Q ss_pred CCceeeeccccccc-----ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccC-Cccceecc
Q psy91 77 RDYIGFATLPEQVH-----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVN-GSNTVIEV 142 (541)
Q Consensus 77 ~~~i~~~~l~~~~~-----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~-G~~~~~~~ 142 (541)
.+.+.++||++.|+ .+.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++ |.... .+
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~---~~~g~~~~-~~ 352 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVN---VRVGDEWV-DM 352 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---EecCCccc-cc
Confidence 34699999999995 257999999999 9999999999999999955 46789998 64 43110 01
Q ss_pred ccc---ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 143 AGT---KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 143 ~~~---~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
... .....++.++||+|+..+++.+ ||.+|+.+.. ...........++..+++.+|+.+...
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~------tv~e~l~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~-------- 417 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHR------TVLDNLTEAI-GLELPDELARMKAVITLKMVGFDEEKA-------- 417 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCC------cHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCCCCCccc--------
Confidence 110 0112234699999999899889 9999997641 111122223345566677666642000
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
. -+.++.+..+|+|
T Consensus 418 -----------------------------------------------------------------~-~~~~~~~~~LSgG 431 (520)
T TIGR03269 418 -----------------------------------------------------------------E-EILDKYPDELSEG 431 (520)
T ss_pred -----------------------------------------------------------------h-hhhhCChhhCCHH
Confidence 0 0123456679999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhc
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERG 378 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~ 378 (541)
++|++.|+++++. +++++|+|||..|.+..+.. ++.+.|.+..+. +.++++.+|+++... .
T Consensus 432 q~qrv~laral~~------~p~lLllDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tvi~vsHd~~~~~-~ 493 (520)
T TIGR03269 432 ERHRVALAQVLIK------EPRIVILDEPTGTMDPITKV-----------DVTHSILKAREEMEQTFIIVSHDMDFVL-D 493 (520)
T ss_pred HHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHHcCcEEEEEeCCHHHHH-H
Confidence 9999999999998 99999999998886655543 677777766543 788999999987543 3
Q ss_pred ccceeEEEc
Q psy91 379 VKLRLTVVD 387 (541)
Q Consensus 379 l~~rvnvIp 387 (541)
+..++.++.
T Consensus 494 ~~d~i~~l~ 502 (520)
T TIGR03269 494 VCDRAALMR 502 (520)
T ss_pred hCCEEEEEE
Confidence 566666663
No 264
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.79 E-value=1.1e-19 Score=217.58 Aligned_cols=188 Identities=20% Similarity=0.232 Sum_probs=143.7
Q ss_pred ceeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC-----CCCCeeecccCCccceeccc
Q psy91 79 YIGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD-----LYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 79 ~i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~-----~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.++||++.|+ .+.+|+|||+.+ ||+|||||||||||++|++.. .+|+|. ++|.. ..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~---i~G~~----~~ 831 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRL---VNGRP----LD 831 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE---ECCEE----CC
Confidence 478999999885 457999999999 999999999999999997764 458888 78872 21
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccc---cccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT---LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~---~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
...++.+|||+|++.+++.+ ||+|++.|+. .+...+..+..++++++++.+|+.++.++.++
T Consensus 832 ----~~~~~~i~yv~Q~~~~~~~~------Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~----- 896 (1394)
T TIGR00956 832 ----SSFQRSIGYVQQQDLHLPTS------TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG----- 896 (1394)
T ss_pred ----hhhhcceeeecccccCCCCC------CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC-----
Confidence 12355799999999999999 9999999862 22233445556678888998888654222111
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
. ....+|+|+
T Consensus 897 -------------------------------------------------~---------------------~~~~LSgGq 906 (1394)
T TIGR00956 897 -------------------------------------------------V---------------------PGEGLNVEQ 906 (1394)
T ss_pred -------------------------------------------------C---------------------CCCCCCHHH
Confidence 0 011589999
Q ss_pred CcceEEeeeEEEeeecCeeee-EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 301 GKTTTIEKKSMDIEERGVKLR-LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~-L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+|+++|+++++. +++ ++++|||+.|.+..+.. .+.+.|.+..+.++++++.+|+.+..
T Consensus 907 rqRl~Ia~aL~~------~P~~iLlLDEPTsgLD~~~~~-----------~i~~~L~~la~~g~tvI~t~H~~~~~ 965 (1394)
T TIGR00956 907 RKRLTIGVELVA------KPKLLLFLDEPTSGLDSQTAW-----------SICKLMRKLADHGQAILCTIHQPSAI 965 (1394)
T ss_pred hhHHHHHHHHHc------CCCeEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHHcCCEEEEEecCCCHH
Confidence 999999999998 996 99999998886655443 66777777766789999999988743
No 265
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=5.8e-20 Score=175.63 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=127.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.+++++++|+++.+++ +||+| +|+||||||||||+++|+| .+.+|+|+ ++|..+ ... ..
T Consensus 2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~i----~~~----~~ 69 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIY---YKNCNI----NNI----AK 69 (195)
T ss_pred eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCccc----Chh----hh
Confidence 67899999998776665 99999 9999999999999999955 57789999 888732 111 12
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
..++|++|+..+++.. |+.+|+.+...... ..+.+..+++.+|+..
T Consensus 70 ~~~~~~~~~~~~~~~~------tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~----------------------- 115 (195)
T PRK13541 70 PYCTYIGHNLGLKLEM------TVFENLKFWSEIYN-----SAETLYAAIHYFKLHD----------------------- 115 (195)
T ss_pred hhEEeccCCcCCCccC------CHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHh-----------------------
Confidence 3579999988777778 99999977521110 1123334444444321
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..++.+..+|+|++|++.|+++++
T Consensus 116 --------------------------------------------------------~~~~~~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 116 --------------------------------------------------------LLDEKCYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred --------------------------------------------------------hhccChhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
. +++++|+|||..|.+..... .+.+++.+..+.++++++.+|+.+..
T Consensus 140 ~------~p~~lllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 140 C------QSDLWLLDEVETNLSKENRD-----------LLNNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred c------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 8 99999999998876655443 56666665545678889999887643
No 266
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=8.7e-20 Score=186.35 Aligned_cols=201 Identities=15% Similarity=0.163 Sum_probs=136.9
Q ss_pred CCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceecc
Q psy91 76 DRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIEV 142 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~~ 142 (541)
+++.|.++||++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. ++|..+..
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~---i~g~~i~~-- 116 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVE---LDGQDIYQ-- 116 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE---ECCEEccc--
Confidence 345689999999999889999999999 99999999999999999664 3689999 88873211
Q ss_pred cccccccccccEEEEeCCCccccccccccCCCcccceeccccccc------------hh-hHhHhhhHHHHHHHhCCCCc
Q psy91 143 AGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ------------VH-RKSVKKGFDFTLMVVGESGL 209 (541)
Q Consensus 143 ~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~------------~~-~~e~~~~v~~~L~~vGL~g~ 209 (541)
........++.++|++|+..+++ . |+++|+.++..... .. .....+.+..++..+|+...
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~-~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFP-K------SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred ccccHHHHhhceEEEccCCcccc-c------cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 01111223457999999987775 6 89999987621110 00 00111223333333332110
Q ss_pred cchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCC
Q psy91 210 GKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 289 (541)
Q Consensus 210 ~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~ 289 (541)
+. . ..
T Consensus 190 ---------------------------------------------------------------------~~-----~-~~ 194 (305)
T PRK14264 190 ---------------------------------------------------------------------VN-----D-RL 194 (305)
T ss_pred ---------------------------------------------------------------------hh-----H-Hh
Confidence 00 0 11
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
+..+..+|+|++|++.|+++++. +++++|+|||..|.+..... .+.+.|.+..+ +.++++.+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~------~p~lLLLDEPtsgLD~~~~~-----------~l~~~L~~~~~-~~tiiivt 256 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAV------DPEVILMDEPASALDPIATS-----------KIEDLIEELAE-EYTVVVVT 256 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEE
Confidence 33456799999999999999998 99999999998887665543 56666666554 37888999
Q ss_pred ccchhhhhcccce
Q psy91 370 KSMDIEERGVKLR 382 (541)
Q Consensus 370 ~~~di~~~~l~~r 382 (541)
|+.+... .+..+
T Consensus 257 H~~~~i~-~~~d~ 268 (305)
T PRK14264 257 HNMQQAA-RISDQ 268 (305)
T ss_pred cCHHHHH-HhcCE
Confidence 9887543 23444
No 267
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.78 E-value=1.3e-19 Score=180.43 Aligned_cols=197 Identities=14% Similarity=0.094 Sum_probs=134.2
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--C----CCCCeeecccCCccceecccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D----LYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~----~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.++|++++| ++.+|+++||+| +|+|||||||||||++|+|. + ++|+|+ ++|..+ ..
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~---~~g~~i----~~-- 73 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVL---LDGKPV----AP-- 73 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEE---ECCeec----cc--
Confidence 58899999999 578999999999 99999999999999999654 4 679999 888732 11
Q ss_pred cccccccEEEEeCCCc--cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 147 VRGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
....++.++||+|+.. +.+.+ ++.+++.+.....+... ..+.+..+++.+|+....
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~-------------- 131 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLH------TMHTHARETCLALGKPA--DDATLTAALEAVGLENAA-------------- 131 (254)
T ss_pred cccccceEEEEecCCccccCccc------cHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChh--------------
Confidence 1122356999999974 33445 66666543200001111 123455566666653200
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ +.+..+..+|+|++|++
T Consensus 132 ----------------------------------------------------~----------~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 132 ----------------------------------------------------R----------VLKLYPFEMSGGMLQRM 149 (254)
T ss_pred ----------------------------------------------------h----------hhhcCCcccCHHHHHHH
Confidence 0 11233556899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rv 383 (541)
.|+++++. +++++|+|||..|-+..... .+.+.|.+..+ .++++++.+|+.+... .+..++
T Consensus 150 ~laral~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~L~~~~~~~g~til~~sH~~~~~~-~~~d~v 211 (254)
T PRK10418 150 MIALALLC------EAPFIIADEPTTDLDVVAQA-----------RILDLLESIVQKRALGMLLVTHDMGVVA-RLADDV 211 (254)
T ss_pred HHHHHHhc------CCCEEEEeCCCcccCHHHHH-----------HHHHHHHHHHHhcCcEEEEEecCHHHHH-HhCCEE
Confidence 99999998 99999999998876654442 55666666544 3788999999876533 344555
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 212 ~~l~ 215 (254)
T PRK10418 212 AVMS 215 (254)
T ss_pred EEEE
Confidence 5553
No 268
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.78 E-value=6.9e-20 Score=203.58 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=143.2
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|++ +++|+|+|++| ||+||||||||||+++|+| .|..|+|+ ++|. .......
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~---i~g~----~i~~~~~ 412 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL---LDGH----DLRDYTL 412 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE---ECCE----EhhhcCH
Confidence 36999999999965 57999999999 9999999999999999954 57789999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.++||+|++.+|+ - |++||+.+++ +... ..+.+..+++.+|+...-.+ +
T Consensus 413 ~~~~~~i~~v~Q~~~lf~-~------Ti~~Ni~~~~-~~~~----~~~~i~~al~~~~l~~~i~~--------l------ 466 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFN-D------TIANNIAYAR-TEQY----SREQIEEAARMAYAMDFINK--------M------ 466 (582)
T ss_pred HHHHhhceEEccCceeec-c------hHHHHHhcCC-CCCC----CHHHHHHHHHHhCcHHHHHh--------c------
Confidence 345667999999999885 4 8999999873 1111 23345566776666541111 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|.+- .+|+ .-..+|||++|++.|+
T Consensus 467 ------------------------------p~Gldt---~ig~---------------------~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 467 ------------------------------DNGLDT---VIGE---------------------NGVLLSGGQRQRIAIA 492 (582)
T ss_pred ------------------------------ccccCc---eeCC---------------------CCCcCCHHHHHHHHHH
Confidence 001100 0111 1235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+++. +++++|+|||+.+-+..++. .+.+.+.+. ..++|+++.+|+.... +...++.+++
T Consensus 493 Rall~------~~~ililDEptsaLD~~t~~-----------~i~~~l~~~-~~~~tvI~VtHr~~~~--~~~D~Ii~l~ 552 (582)
T PRK11176 493 RALLR------DSPILILDEATSALDTESER-----------AIQAALDEL-QKNRTSLVIAHRLSTI--EKADEILVVE 552 (582)
T ss_pred HHHHh------CCCEEEEECccccCCHHHHH-----------HHHHHHHHH-hCCCEEEEEecchHHH--HhCCEEEEEE
Confidence 99999 99999999997776655553 455555544 3468999999987543 3456666664
No 269
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.78 E-value=7.1e-20 Score=207.80 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=142.5
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.++||+++|+ ++++|+|+|++| ||+||||||||||+++|+ ..|..|+|+ ++|. ++......
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~---idg~----~i~~~~~~ 544 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL---LNGF----SLKDIDRH 544 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE---ECCE----EHHHcCHH
Confidence 4699999999997 467999999999 999999999999999994 467889999 8887 33333344
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+|||+|++.+|+ - |++||+.++..+ ..+ .+.+.+++...|+.+.-.+ .=.|++.
T Consensus 545 ~lr~~i~~v~Q~~~lf~-g------TI~eNi~l~~~~-~~~----~~~i~~a~~~a~l~~~i~~----lp~gldt----- 603 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFS-G------SILENLLLGAKE-NVS----QDEIWAACEIAEIKDDIEN----MPLGYQT----- 603 (708)
T ss_pred HHHHheEEEecCceehh-H------HHHHHHhccCCC-CCC----HHHHHHHHHHhCCHHHHHh----cccccCc-----
Confidence 55678999999999884 3 899999987212 111 2344556666665431110 0000000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.+|+ ....+|+||+|++.|+|
T Consensus 604 --------------------------------------~i~e---------------------~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 604 --------------------------------------ELSE---------------------EGSSISGGQKQRIALAR 624 (708)
T ss_pred --------------------------------------EecC---------------------CCCCCCHHHHHHHHHHH
Confidence 0111 12358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+. +++++|+|||+.+-+..++. .+.+.|.+. .++|+++.+|...... ...++.+++
T Consensus 625 all~------~p~iliLDE~Ts~LD~~te~-----------~i~~~L~~~--~~~T~IiitHr~~~~~--~~D~i~~l~ 682 (708)
T TIGR01193 625 ALLT------DSKVLILDESTSNLDTITEK-----------KIVNNLLNL--QDKTIIFVAHRLSVAK--QSDKIIVLD 682 (708)
T ss_pred HHhh------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHh--cCCEEEEEecchHHHH--cCCEEEEEE
Confidence 9999 99999999998776554443 555666542 3688999999876543 456666664
No 270
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.78 E-value=6.7e-20 Score=202.96 Aligned_cols=202 Identities=21% Similarity=0.291 Sum_probs=140.3
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|+++|+++.|+ ++++|+|+||++ ||+||||||||||+++| +..+..|+|. ++|. ++......
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~---idg~----dI~~i~~~ 399 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL---IDGI----DIRDISLD 399 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE---ECCE----ehhhcCHH
Confidence 4599999999999 689999999999 99999999999999999 4556789999 7887 44444445
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+++|+|+..||. - |+++|+.+++-. .+. +.+.+++...++.+ .+..+ |+
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~------TI~~NI~~g~~~--at~----eei~~a~k~a~~~d--------~I~~l--p~--- 453 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-G------TIRENIALGRPD--ATD----EEIEEALKLANAHE--------FIANL--PD--- 453 (567)
T ss_pred HHHHhccEEcccceeec-c------cHHHHHhcCCCC--CCH----HHHHHHHHHhChHH--------HHHhC--cc---
Confidence 66778999999999996 5 899999999421 222 23334444443322 11111 00
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
||.+ ++|+. -..+|+||+|+++|+|
T Consensus 454 ---------------g~dt-------------------~vge~---------------------G~~LSgGQrQrlaiAR 478 (567)
T COG1132 454 ---------------GYDT-------------------IVGER---------------------GVNLSGGQRQRLAIAR 478 (567)
T ss_pred ---------------cccc-------------------eecCC---------------------CccCCHHHHHHHHHHH
Confidence 0000 11222 2358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+. +++++|+|||+..-+..++. .+.+.+.+.. .+||+++..|.+.-... ..++.|++
T Consensus 479 all~------~~~ILILDEaTSalD~~tE~-----------~I~~~l~~l~-~~rT~iiIaHRlsti~~--aD~IiVl~ 537 (567)
T COG1132 479 ALLR------NPPILILDEATSALDTETEA-----------LIQDALKKLL-KGRTTLIIAHRLSTIKN--ADRIIVLD 537 (567)
T ss_pred HHhc------CCCEEEEeccccccCHHhHH-----------HHHHHHHHHh-cCCEEEEEeccHhHHHh--CCEEEEEE
Confidence 9999 99999999996654444432 4555555444 45788888888653332 55666664
No 271
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.78 E-value=9e-20 Score=180.91 Aligned_cols=197 Identities=11% Similarity=0.125 Sum_probs=133.5
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccccccccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYP 153 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~ 153 (541)
+++||++. .+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|+. +.......+++.
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~---~~g~~----i~~~~~~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQ---FAGQP----LEAWSAAELARH 70 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEE---ECCEe----cCcCCHHHHhhh
Confidence 46777775 3899999998 99999999999999999543 4589999 88872 222122223346
Q ss_pred EEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCC
Q psy91 154 WGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 233 (541)
Q Consensus 154 ~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~ 233 (541)
++|++|+..+++.+ |+.+|+.+... .........+.+.++++.+|+..
T Consensus 71 i~~v~q~~~~~~~~------tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~------------------------- 118 (248)
T PRK03695 71 RAYLSQQQTPPFAM------PVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDD------------------------- 118 (248)
T ss_pred eEEecccCccCCCc------cHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHh-------------------------
Confidence 89999998888888 99999887621 11122223345556666665532
Q ss_pred CCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEe
Q psy91 234 EKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDI 313 (541)
Q Consensus 234 ~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i 313 (541)
..+..+..+|+|++|++.|+++++.-
T Consensus 119 ------------------------------------------------------~~~~~~~~LS~G~~qrv~la~al~~~ 144 (248)
T PRK03695 119 ------------------------------------------------------KLGRSVNQLSGGEWQRVRLAAVVLQV 144 (248)
T ss_pred ------------------------------------------------------HhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 11223456899999999999998630
Q ss_pred -eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 314 -EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 314 -~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
....-+++++|+|||..|-+..... .+.++|.+..+.+.++++.+|+++... +++.++.++
T Consensus 145 ~~~~~p~p~llllDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~tvi~~sH~~~~~~-~~~d~i~~l 206 (248)
T PRK03695 145 WPDINPAGQLLLLDEPMNSLDVAQQA-----------ALDRLLSELCQQGIAVVMSSHDLNHTL-RHADRVWLL 206 (248)
T ss_pred ccccCCCCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 0000035999999998876655443 666777666556789999999987432 355565555
No 272
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-19 Score=192.03 Aligned_cols=199 Identities=22% Similarity=0.273 Sum_probs=144.1
Q ss_pred eeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
+.++++++.|++. ++++++|+++ ||+|+||||||||+++|+| .+..|+|. ++|. .........+
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~---vng~----~l~~l~~~~~ 393 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR---VNGI----DLRDLSPEAW 393 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEE---ECCc----cccccCHHHH
Confidence 4445999999875 8999999999 9999999999999999955 56789999 8887 3333334466
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++++++|+|++.+++. |++||+.|++.. ...+.+.++++..|+.+.-.. +
T Consensus 394 ~k~i~~v~Q~p~lf~g-------TireNi~l~~~~------~s~e~i~~al~~a~l~~~v~~-----------p------ 443 (559)
T COG4988 394 RKQISWVSQNPYLFAG-------TIRENILLARPD------ASDEEIIAALDQAGLLEFVPK-----------P------ 443 (559)
T ss_pred HhHeeeeCCCCccccc-------cHHHHhhccCCc------CCHHHHHHHHHHhcHHHhhcC-----------C------
Confidence 7899999999988843 899999998321 223456677888887652110 0
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+|.+ .++|+.| ..+|+||.||+.++|+.
T Consensus 444 ----------------------------~GLd---t~ige~G---------------------~~LSgGQ~QRlaLARAl 471 (559)
T COG4988 444 ----------------------------DGLD---TVIGEGG---------------------AGLSGGQAQRLALARAL 471 (559)
T ss_pred ----------------------------Cccc---chhccCC---------------------CCCCHHHHHHHHHHHHh
Confidence 1111 1123333 35899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.. +.++.++|||+.+-+..++. .+.+.+.+..+. +|+++.+|.+... .-..++.+++
T Consensus 472 l~------~~~l~llDEpTA~LD~etE~-----------~i~~~l~~l~~~-ktvl~itHrl~~~--~~~D~I~vld 528 (559)
T COG4988 472 LS------PASLLLLDEPTAHLDAETEQ-----------IILQALQELAKQ-KTVLVITHRLEDA--ADADRIVVLD 528 (559)
T ss_pred cC------CCCEEEecCCccCCCHhHHH-----------HHHHHHHHHHhC-CeEEEEEcChHHH--hcCCEEEEec
Confidence 98 89999999999988777664 444555555544 8888888875432 3345666665
No 273
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=2.6e-19 Score=172.36 Aligned_cols=186 Identities=16% Similarity=0.137 Sum_probs=127.2
Q ss_pred eeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 80 IGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 80 i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
++++||++.|+++ .+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~---~~g----------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS---VPG----------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE---EcC-----------
Confidence 4688999999764 6999999999 9999999999999999955 46677777 555
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.++|++|+..++ .. |++||+.+.... .. .....++..+++... +... +
T Consensus 67 ------~i~~~~q~~~l~-~~------t~~enl~~~~~~---~~----~~~~~~~~~~~l~~~--------~~~~--~-- 114 (204)
T cd03250 67 ------SIAYVSQEPWIQ-NG------TIRENILFGKPF---DE----ERYEKVIKACALEPD--------LEIL--P-- 114 (204)
T ss_pred ------EEEEEecCchhc-cC------cHHHHhccCCCc---CH----HHHHHHHHHcCcHHH--------HHhc--c--
Confidence 489999998876 56 999999886211 11 112223333333210 0000 0
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
.|. .. ..+..+..+|+|++|++.|
T Consensus 115 ----------------------------------------------~~~---------~~-~~~~~~~~lS~G~~qrv~l 138 (204)
T cd03250 115 ----------------------------------------------DGD---------LT-EIGEKGINLSGGQKQRISL 138 (204)
T ss_pred ----------------------------------------------Ccc---------cc-eecCCCCcCCHHHHHHHHH
Confidence 000 00 1123355789999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhh-hhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQ-YFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~-~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +++++|+|||..|-+..... .+.+ ++.+..+.++++++.+|+.+.... ..++.+
T Consensus 139 aral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~ll~~~~~~~~tvi~~sh~~~~~~~--~d~i~~ 199 (204)
T cd03250 139 ARAVYS------DADIYLLDDPLSAVDAHVGR-----------HIFENCILGLLLNNKTRILVTHQLQLLPH--ADQIVV 199 (204)
T ss_pred HHHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHHhccCCCEEEEEeCCHHHHhh--CCEEEE
Confidence 999999 99999999998887665442 4444 344444457899999999776553 455544
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 200 l 200 (204)
T cd03250 200 L 200 (204)
T ss_pred E
Confidence 4
No 274
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.78 E-value=1e-19 Score=206.23 Aligned_cols=201 Identities=20% Similarity=0.241 Sum_probs=140.5
Q ss_pred CCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|+++||+++|++ +++|+|+||+| ||+||||||||||+++| ...+.+|+|. ++|. .+...
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~---idg~----~i~~~ 548 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL---LDGV----PLVQY 548 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE---ECCE----EHHhc
Confidence 356999999999974 46999999999 99999999999999999 4467789999 8887 33333
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.....++.++||+|++.+|. - |++||+.++. +. .+ .+.+..+++.+|+...-.+ + +
T Consensus 549 ~~~~lr~~i~~v~Q~~~lF~-g------TIreNI~~g~-~~-~~----~e~i~~al~~a~l~~~i~~--------l--p- 604 (711)
T TIGR00958 549 DHHYLHRQVALVGQEPVLFS-G------SVRENIAYGL-TD-TP----DEEIMAAAKAANAHDFIME--------F--P- 604 (711)
T ss_pred CHHHHHhhceEEecCccccc-c------CHHHHHhcCC-CC-CC----HHHHHHHHHHcCCHHHHHh--------C--C-
Confidence 33445668999999999884 3 8999999983 11 11 2345566777666431111 0 0
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+|.+- .+|+ .-..+|+||+|+++
T Consensus 605 ---------------------------------~GldT---~ige---------------------~G~~LSGGQkQRla 627 (711)
T TIGR00958 605 ---------------------------------NGYDT---EVGE---------------------KGSQLSGGQKQRIA 627 (711)
T ss_pred ---------------------------------CccCC---cccC---------------------CCCcCCHHHHHHHH
Confidence 00000 0111 12358999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+|+.+. +++++|+|||+.+-+..++. .+.+ .....++|+++.+|.++... ...++.+
T Consensus 628 lARALl~------~p~ILILDEpTSaLD~~te~-----------~i~~---~~~~~~~TvIiItHrl~~i~--~aD~Iiv 685 (711)
T TIGR00958 628 IARALVR------KPRVLILDEATSALDAECEQ-----------LLQE---SRSRASRTVLLIAHRLSTVE--RADQILV 685 (711)
T ss_pred HHHHHhc------CCCEEEEEccccccCHHHHH-----------HHHH---hhccCCCeEEEEeccHHHHH--hCCEEEE
Confidence 9999999 99999999997765544332 3333 11235789999999976543 4567776
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 686 L~ 687 (711)
T TIGR00958 686 LK 687 (711)
T ss_pred EE
Confidence 64
No 275
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.6e-19 Score=185.81 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=140.3
Q ss_pred CCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-------CCCCCeeecccCCccceec
Q psy91 77 RDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-------DLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 77 ~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-------~~~G~i~~~~~~G~~~~~~ 141 (541)
.+.|.++|+++.|. .+.+|+|+||+| ||+|||||||||||++|++. +.+|+|. ++|..+..
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~---idG~~i~~- 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY---FLGTNTRS- 153 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE---ECCEEccc-
Confidence 35799999999995 356999999999 99999999999999999654 3589999 88883311
Q ss_pred ccccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHh-HhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 142 VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKS-VKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e-~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
........+..++||+|++.++. . |+++|+.|+....+....+ ..+.+..+++.+++..-
T Consensus 154 -~~~~~~~lr~~i~~v~q~~~~~~-~------ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------- 214 (329)
T PRK14257 154 -KKISSLELRTRIGMVFQKPTPFE-M------SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE----------- 214 (329)
T ss_pred -cccchHhhhccEEEEecCCccCC-C------cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch-----------
Confidence 01111234557999999988774 6 9999999863111122122 12234555655554210
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
+. + ..+.....+|+|+
T Consensus 215 l~------------------------------------------------------~----------~~~~~~~~LSgGq 230 (329)
T PRK14257 215 VK------------------------------------------------------D----------DLDKAGNALSGGQ 230 (329)
T ss_pred hh------------------------------------------------------h----------hhhCCcccCCHHH
Confidence 00 0 0122355789999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||..|-+..... .+.+.+.+..+ ++++++.+|.++... .++
T Consensus 231 kqRl~LARAl~~------~p~IlLLDEPts~LD~~~~~-----------~i~~~i~~l~~-~~Tii~iTH~l~~i~-~~~ 291 (329)
T PRK14257 231 QQRLCIARAIAL------EPEVLLMDEPTSALDPIATA-----------KIEELILELKK-KYSIIIVTHSMAQAQ-RIS 291 (329)
T ss_pred HHHHHHHHHHHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHhc-CCEEEEEeCCHHHHH-HhC
Confidence 999999999998 99999999997776544432 45555555544 578899999877543 345
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 292 Driivl~ 298 (329)
T PRK14257 292 DETVFFY 298 (329)
T ss_pred CEEEEEE
Confidence 5666653
No 276
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=8.6e-20 Score=170.76 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=117.4
Q ss_pred eeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
++++++++.|+++ .+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|.. ........
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~---~~g~~----~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL---IDGVD----LRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE---ECCEE----hhhcCHHH
Confidence 4678999999876 7999999999 9999999999999999954 56789999 88872 22111222
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+++.++|++|+..+++ . |+.||+
T Consensus 74 ~~~~i~~~~~~~~~~~-~------t~~e~l-------------------------------------------------- 96 (171)
T cd03228 74 LRKNIAYVPQDPFLFS-G------TIRENI-------------------------------------------------- 96 (171)
T ss_pred HHhhEEEEcCCchhcc-c------hHHHHh--------------------------------------------------
Confidence 3456889988765543 4 555544
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+|+|++|++.|+++
T Consensus 97 ------------------------------------------------------------------LS~G~~~rl~la~a 110 (171)
T cd03228 97 ------------------------------------------------------------------LSGGQRQRIAIARA 110 (171)
T ss_pred ------------------------------------------------------------------hCHHHHHHHHHHHH
Confidence 67788999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... ++.+++.+..+ ++++++.+|+.+.... +.++.++
T Consensus 111 l~~------~p~llllDEP~~gLD~~~~~-----------~l~~~l~~~~~-~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 111 LLR------DPPILILDEATSALDPETEA-----------LILEALRALAK-GKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred Hhc------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHhcC-CCEEEEEecCHHHHHh--CCEEEEE
Confidence 988 99999999998887665543 56666665543 5788899998876542 5555554
No 277
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.78 E-value=1.1e-19 Score=202.22 Aligned_cols=202 Identities=16% Similarity=0.226 Sum_probs=142.6
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.++|++++|++ +.+|+|+|+++ ||+|+||||||||+++|+| .|.+|+|+ ++|. .+......
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~---i~g~----~i~~~~~~ 405 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL---IDGT----DIRTVTRA 405 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE---ECCE----EhhhCCHH
Confidence 46999999999975 57999999999 9999999999999999954 57789999 8887 33333334
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|++.+++ - |++||+.+++ +. .+ .+.+..++..+|+... +..+ +
T Consensus 406 ~~r~~i~~v~Q~~~lf~-~------Ti~~Ni~~~~-~~-~~----d~~i~~al~~~~l~~~--------i~~l--p---- 458 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFN-R------SIEDNIRVGR-PD-AT----DEEMRAAAERAQAHDF--------IERK--P---- 458 (588)
T ss_pred HHHhheEEEecCccccc-c------cHHHHHhcCC-CC-CC----HHHHHHHHHHhCHHHH--------HHhC--c----
Confidence 55678999999998884 3 8999999873 11 11 2335556666665431 1000 0
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+|+ ++. .. .....+|+|++||++|+|
T Consensus 459 ------------------------------~gl------------------dt~-----i~-~~g~~LSgGq~QRialAR 484 (588)
T PRK13657 459 ------------------------------DGY------------------DTV-----VG-ERGRQLSGGERQRLAIAR 484 (588)
T ss_pred ------------------------------ccc------------------cch-----hc-CCCCCCCHHHHHHHHHHH
Confidence 000 000 00 113358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.+-+..+.. .+.+.+.+.. .++|+++.+|+..... ...++.++.
T Consensus 485 all~------~~~iliLDEpts~LD~~t~~-----------~i~~~l~~~~-~~~tvIiitHr~~~~~--~~D~ii~l~ 543 (588)
T PRK13657 485 ALLK------DPPILILDEATSALDVETEA-----------KVKAALDELM-KGRTTFIIAHRLSTVR--NADRILVFD 543 (588)
T ss_pred HHhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHh-cCCEEEEEEecHHHHH--hCCEEEEEE
Confidence 9999 99999999998876665553 5555555442 4789999999876543 455666653
No 278
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.78 E-value=9e-20 Score=200.36 Aligned_cols=192 Identities=20% Similarity=0.224 Sum_probs=137.2
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.++||+++|++ +++|+|+|++| ||+||||||||||+++|++ .+..|+|. ++|. .+.....
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~---~~g~----~i~~~~~ 391 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA---VNGV----PLADADA 391 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCE----ehhhCCH
Confidence 36999999999976 46999999999 9999999999999999944 67789999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.++||+|++.+++ . |++||+.++. +. . ..+.+..+++.+|+.+.-++.. .|++.
T Consensus 392 ~~lr~~i~~v~Q~~~lf~-~------ti~~Ni~~~~-~~-~----~~~~i~~a~~~~~l~~~i~~lp----~Gldt---- 450 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFA-G------TIAENIRLAR-PD-A----SDAEIRRALERAGLDEFVAALP----QGLDT---- 450 (529)
T ss_pred HHHHhheEEEcCCCcccC-c------CHHHHHhccC-CC-C----CHHHHHHHHHHcCcHHHHHhCc----ccccc----
Confidence 455678999999998884 4 8999999873 11 1 1234556666666654111100 00000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+ ....+|||++|+++|+
T Consensus 451 ---------------------------------------~v~e---------------------~g~~LSgGq~qri~la 470 (529)
T TIGR02857 451 ---------------------------------------LIGE---------------------GGAGLSGGQAQRLALA 470 (529)
T ss_pred ---------------------------------------hhcc---------------------ccccCCHHHHHHHHHH
Confidence 0111 2235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
++++. +++++|+|||+.+-+..++. ++.+.+.+.. .++|+++.+|++...
T Consensus 471 Ral~~------~~~ililDE~ts~lD~~~~~-----------~i~~~l~~~~-~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 471 RAFLR------DAPLLLLDEPTAHLDAETEA-----------LVTEALRALA-QGRTVLLVTHRLALA 520 (529)
T ss_pred HHHhc------CCCEEEEeCcccccCHHHHH-----------HHHHHHHHhc-CCCEEEEEecCHHHH
Confidence 99999 99999999998876665553 4555555443 578999999987653
No 279
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.78 E-value=7.1e-20 Score=178.88 Aligned_cols=185 Identities=18% Similarity=0.143 Sum_probs=128.2
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+.++++++.|+++++|+++||+| +|+||||||||||+++|++ .+.+|+|+ ++|+.+. .
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~---~~g~~~~----~------- 88 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT---VRGRVSS----L------- 88 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEch----h-------
Confidence 67889999999999999999999 9999999999999999955 57789998 7776211 0
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
..+...+.+.+ ||.+|+.++............+.+..+++.+|+..
T Consensus 89 -----~~~~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------- 134 (224)
T cd03220 89 -----LGLGGGFNPEL------TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD----------------------- 134 (224)
T ss_pred -----hcccccCCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------------------
Confidence 00112334556 99999876521111112222233444455444432
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
..++.+..+|+|++|++.|+++++
T Consensus 135 --------------------------------------------------------~~~~~~~~LSgG~~qrv~laral~ 158 (224)
T cd03220 135 --------------------------------------------------------FIDLPVKTYSSGMKARLAFAIATA 158 (224)
T ss_pred --------------------------------------------------------hhhCChhhCCHHHHHHHHHHHHHh
Confidence 112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
. +++++|+|||..|.+..... .+.++|.+..+.++++++.+|+.+... .+..++.++
T Consensus 159 ~------~p~llllDEP~~gLD~~~~~-----------~~~~~l~~~~~~~~tiii~sH~~~~~~-~~~d~i~~l 215 (224)
T cd03220 159 L------EPDILLIDEVLAVGDAAFQE-----------KCQRRLRELLKQGKTVILVSHDPSSIK-RLCDRALVL 215 (224)
T ss_pred c------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 8 99999999998886655443 566667666555788999999977543 234455544
No 280
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.78 E-value=1.4e-19 Score=191.98 Aligned_cols=205 Identities=20% Similarity=0.191 Sum_probs=149.9
Q ss_pred Cceeeeccccccccc----ceeecceEEE------EEEcCCCCCHHHHHHHHhcC------CCCCCeeecccCCccceec
Q psy91 78 DYIGFATLPEQVHRK----SVKKGFDFTL------MVVGESGLGKSTLVNSLFLS------DLYGDRKVPNVNGSNTVIE 141 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~------~~~G~i~~~~~~G~~~~~~ 141 (541)
+.++++||++.|... .+++||||+| ||+|.|||||||+.++|.+. ...|+|. ++|.++...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~---~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI---LDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE---ECCcchhcC
Confidence 478999999999643 5999999999 99999999999999999332 2368888 888744332
Q ss_pred ccccccccccccEEEEeCCC--ccccccccccCCCcccceecc-ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhh
Q psy91 142 VAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFA-TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~-~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l 218 (541)
........+.+.++||||++ .|.|-+ |+.+.+.-. .......+.+..+++.++|+.+|+.+-.
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~------tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~-------- 146 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVM------TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPE-------- 146 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchh------hHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChh--------
Confidence 22222334567899999995 566767 776555433 1222234677888888999999986510
Q ss_pred ccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCC
Q psy91 219 FLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVND 298 (541)
Q Consensus 219 ~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~ 298 (541)
..+++++.+||
T Consensus 147 ---------------------------------------------------------------------~~~~yPheLSG 157 (539)
T COG1123 147 ---------------------------------------------------------------------RRDRYPHQLSG 157 (539)
T ss_pred ---------------------------------------------------------------------hhccCCcccCc
Confidence 00346788999
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEER 377 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~ 377 (541)
|++||+.|+.+++. +|+|+|.|||+.+.++... .|+.+.|++..+ .+.++++.+|++.+...
T Consensus 158 G~rQRv~iAmALa~------~P~LLIaDEPTTaLDvt~q-----------~qIL~llk~l~~e~g~a~l~ITHDl~Vva~ 220 (539)
T COG1123 158 GMRQRVMIAMALAL------KPKLLIADEPTTALDVTTQ-----------AQILDLLKDLQRELGMAVLFITHDLGVVAE 220 (539)
T ss_pred hHHHHHHHHHHHhC------CCCEEEECCCccccCHHHH-----------HHHHHHHHHHHHHcCcEEEEEcCCHHHHHH
Confidence 99999999999999 9999999999766554433 377888887764 57788999999886643
Q ss_pred cccceeEEE
Q psy91 378 GVKLRLTVV 386 (541)
Q Consensus 378 ~l~~rvnvI 386 (541)
++.++.|.
T Consensus 221 -~aDrv~Vm 228 (539)
T COG1123 221 -LADRVVVM 228 (539)
T ss_pred -hcCeEEEE
Confidence 55555544
No 281
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=1.3e-19 Score=171.29 Aligned_cols=162 Identities=15% Similarity=0.235 Sum_probs=122.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc-ccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK-VRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~-~~~ 149 (541)
.+.++|++++| +|+++||++ +|+|||||||||||++|++ .+.+|+|. ++|..+ .... ...
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~~~~~~~~ 72 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT---LDGKPV----TRRSPRDA 72 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEC----CccCHHHH
Confidence 58899999998 999999999 9999999999999999955 56789999 888732 2111 112
Q ss_pred ccccEEEEeCCC---ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 150 RQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 150 ~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.++.++|++|+. .+++.+ |+.||+.+...
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~------t~~e~l~~~~~------------------------------------------ 104 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDL------SVAENIALSSL------------------------------------------ 104 (182)
T ss_pred HhCCeEEecCCcccCcccCCC------cHHHHHHHHhh------------------------------------------
Confidence 345789999984 567777 88887765410
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+|+|++|++.|
T Consensus 105 ---------------------------------------------------------------------LS~G~~qrl~l 115 (182)
T cd03215 105 ---------------------------------------------------------------------LSGGNQQKVVL 115 (182)
T ss_pred ---------------------------------------------------------------------cCHHHHHHHHH
Confidence 67899999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++++|||..|-+..... .+.+.+.+..+.++++++.+|+.+... .+..++.++
T Consensus 116 a~al~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~~~~~tiii~sh~~~~~~-~~~d~v~~l 177 (182)
T cd03215 116 ARWLAR------DPRVLILDEPTRGVDVGAKA-----------EIYRLIRELADAGKAVLLISSELDELL-GLCDRILVM 177 (182)
T ss_pred HHHHcc------CCCEEEECCCCcCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEeCCHHHHH-HhCCEEEEe
Confidence 999998 99999999998876655443 566666665545788999999875332 344555554
No 282
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.78 E-value=1.5e-19 Score=201.41 Aligned_cols=191 Identities=20% Similarity=0.246 Sum_probs=140.2
Q ss_pred cccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC-----CCCeeecccCCccceecccccccccccccEEEEe
Q psy91 90 HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL-----YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 90 ~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~-----~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
+++.+|+|+|+++ ||+|||||||||||++|+|... .|+|. ++|.. ... ...++.+|||+
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~---~~g~~----~~~---~~~~~~i~yv~ 105 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVL---LNGMP----IDA---KEMRAISAYVQ 105 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE---ECCEE----CCH---HHHhhhceeec
Confidence 4577999999999 9999999999999999977543 47788 77762 211 23455789999
Q ss_pred CCCccccccccccCCCcccceecc---ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCC
Q psy91 159 GSTVLTPSLIGSLFQTDRDYIGFA---TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235 (541)
Q Consensus 159 Q~~~l~~~lig~~~qtv~e~l~~~---~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~ 235 (541)
|++.+++.+ ||+||+.|+ +.+....+++..++++.+++.+|+.++.++.++..
T Consensus 106 Q~~~~~~~l------TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~------------------ 161 (617)
T TIGR00955 106 QDDLFIPTL------TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP------------------ 161 (617)
T ss_pred cccccCccC------cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCC------------------
Confidence 999999999 999999987 23333445566678899999999876543322210
Q ss_pred CCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeee
Q psy91 236 GSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315 (541)
Q Consensus 236 ~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e 315 (541)
.....+|+|++|+++|+++++.
T Consensus 162 -------------------------------------------------------~~~~~LSgGqrkRvsia~aL~~--- 183 (617)
T TIGR00955 162 -------------------------------------------------------GRVKGLSGGERKRLAFASELLT--- 183 (617)
T ss_pred -------------------------------------------------------CCCCCcCcchhhHHHHHHHHHc---
Confidence 0123489999999999999999
Q ss_pred cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 316 ~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++++|||..|.+..... .+.+.|++..+.++++++.+|...-+......++.++
T Consensus 184 ---~p~vlllDEPtsgLD~~~~~-----------~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 184 ---DPPLLFCDEPTSGLDSFMAY-----------SVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240 (617)
T ss_pred ---CCCEEEeeCCCcchhHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEe
Confidence 99999999998886655443 6666677666668999999998753322233444443
No 283
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=2.8e-19 Score=173.93 Aligned_cols=201 Identities=12% Similarity=0.101 Sum_probs=131.1
Q ss_pred eeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 81 GFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 81 ~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
.+.++.++|+ ++.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+............+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~---~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVH---WSNKNESEPSFEATRSRNR 78 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE---ECCcccccccccccchhhc
Confidence 4678888896 467999999999 9999999999999999965 46789999 8777321100000111234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.++|++|+..++ .. |+.+|+.+.. .. .. ..+..+++.+|+...
T Consensus 79 ~~i~~~~q~~~~~-~~------t~~~nl~~~~-~~--~~----~~~~~~~~~~~l~~~---------------------- 122 (218)
T cd03290 79 YSVAYAAQKPWLL-NA------TVEENITFGS-PF--NK----QRYKAVTDACSLQPD---------------------- 122 (218)
T ss_pred ceEEEEcCCCccc-cc------cHHHHHhhcC-cC--CH----HHHHHHHHHhCcHHH----------------------
Confidence 5699999998776 56 8999998752 11 11 112233444443210
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhc-ccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF-LSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~-~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
++.+- ..+...+..+..+|+|++|++.|++++
T Consensus 123 -----------------------------------------------~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral 155 (218)
T cd03290 123 -----------------------------------------------IDLLPFGDQTEIGERGINLSGGQRQRICVARAL 155 (218)
T ss_pred -----------------------------------------------HHhCcCccccCcccCCCcCCHHHHHHHHHHHHH
Confidence 00000 000011234567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhh--hhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQ--YFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~--~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|.+..+.. .+.+ ++....+.+.++++.+|+.+... ...++.++
T Consensus 156 ~~------~p~illlDEPt~~LD~~~~~-----------~l~~~~ll~~~~~~~~tii~~sH~~~~~~--~~d~i~~l 214 (218)
T cd03290 156 YQ------NTNIVFLDDPFSALDIHLSD-----------HLMQEGILKFLQDDKRTLVLVTHKLQYLP--HADWIIAM 214 (218)
T ss_pred hh------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHHHhcCCCEEEEEeCChHHHh--hCCEEEEe
Confidence 99 99999999998887655442 3333 33333344789999999987653 34555444
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.78 E-value=9.6e-20 Score=171.54 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=119.9
Q ss_pred eeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
|+++++++.|+++ .+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ... ...
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~---~~g~~~----~~~-~~~ 72 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT---LDGVPV----SDL-EKA 72 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE---ECCEEH----HHH-HHH
Confidence 4678999999765 7999999999 9999999999999999955 46789999 888722 111 112
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++|++|+..+++ . |++||+
T Consensus 73 ~~~~i~~~~q~~~~~~-~------tv~~~i-------------------------------------------------- 95 (178)
T cd03247 73 LSSLISVLNQRPYLFD-T------TLRNNL-------------------------------------------------- 95 (178)
T ss_pred HHhhEEEEccCCeeec-c------cHHHhh--------------------------------------------------
Confidence 3456899999876653 5 666654
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+..+|+|++|++.|+++
T Consensus 96 ---------------------------------------------------------------~~~LS~G~~qrv~lara 112 (178)
T cd03247 96 ---------------------------------------------------------------GRRFSGGERQRLALARI 112 (178)
T ss_pred ---------------------------------------------------------------cccCCHHHHHHHHHHHH
Confidence 22478899999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++. +++++|+|||..|-+..... .+.+.+.+.. .++++++.+|+.+... ...++.++
T Consensus 113 l~~------~p~~lllDEP~~~LD~~~~~-----------~l~~~l~~~~-~~~tii~~sh~~~~~~--~~d~~~~l 169 (178)
T cd03247 113 LLQ------DAPIVLLDEPTVGLDPITER-----------QLLSLIFEVL-KDKTLIWITHHLTGIE--HMDKILFL 169 (178)
T ss_pred Hhc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEecCHHHHH--hCCEEEEE
Confidence 998 99999999998876655443 5556666554 3688899999988654 34566555
No 285
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.6e-19 Score=173.59 Aligned_cols=173 Identities=18% Similarity=0.190 Sum_probs=123.2
Q ss_pred eeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-----CCCCCeeecccCCccceecccc
Q psy91 80 IGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-----DLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 80 i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-----~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
+.++||++.|+ ++.+|+++||+| ||+|||||||||||++|+|. +.+|+|. ++|..+ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~---i~g~~~----~~ 76 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH---YNGIPY----KE 76 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE---ECCEEC----cc
Confidence 57888899885 457999999999 99999999999999999664 5689999 888732 11
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
.. ...++.++|++|+..+++.+ ||++|+.++... .
T Consensus 77 ~~-~~~~~~i~~~~q~~~~~~~~------tv~~~l~~~~~~------------~-------------------------- 111 (202)
T cd03233 77 FA-EKYPGEIIYVSEEDVHFPTL------TVRETLDFALRC------------K-------------------------- 111 (202)
T ss_pred ch-hhhcceEEEEecccccCCCC------cHHHHHhhhhhh------------c--------------------------
Confidence 11 12345799999999999888 999998764100 0
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
.+..+..+|+|++|++
T Consensus 112 ----------------------------------------------------------------~~~~~~~LS~Ge~qrl 127 (202)
T cd03233 112 ----------------------------------------------------------------GNEFVRGISGGERKRV 127 (202)
T ss_pred ----------------------------------------------------------------cccchhhCCHHHHHHH
Confidence 0112345899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeec-cccchhhhhcccce
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIE-KKSMDIEERGVKLR 382 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~-~~~~di~~~~l~~r 382 (541)
.|+++++. +++++|+|||..|.+..... .+.+.+.+..+. +.++++. .|..+.. ..+..+
T Consensus 128 ~laral~~------~p~llllDEPt~~LD~~~~~-----------~~~~~l~~~~~~~~~t~ii~~~h~~~~~-~~~~d~ 189 (202)
T cd03233 128 SIAEALVS------RASVLCWDNSTRGLDSSTAL-----------EILKCIRTMADVLKTTTFVSLYQASDEI-YDLFDK 189 (202)
T ss_pred HHHHHHhh------CCCEEEEcCCCccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHhCCe
Confidence 99999999 99999999998876655443 566666666544 4555554 4443322 224445
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
+.++
T Consensus 190 i~~l 193 (202)
T cd03233 190 VLVL 193 (202)
T ss_pred EEEE
Confidence 4444
No 286
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.78 E-value=9.1e-20 Score=183.05 Aligned_cols=200 Identities=14% Similarity=0.175 Sum_probs=137.8
Q ss_pred ceeeecccccc--cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQV--HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~--~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.|.++|+++.| +...+|+++||+| +|+|||||||||||++|++. +.+|+|+ ++|..+ .......
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~---i~g~~i----~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQ---IDGVSW----NSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEE---ECCEEh----hhCCHHH
Confidence 47899999999 4567999999999 99999999999999999432 3689999 888732 2222223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++||+|+..+++ . |+++|+.... ... .+.+..+++.+|+.+..+... .
T Consensus 75 lr~~i~~v~q~~~lf~-~------tv~~nl~~~~---~~~----~~~~~~~l~~~gL~~~~~~~p----~---------- 126 (275)
T cd03289 75 WRKAFGVIPQKVFIFS-G------TFRKNLDPYG---KWS----DEEIWKVAEEVGLKSVIEQFP----G---------- 126 (275)
T ss_pred HhhhEEEECCCcccch-h------hHHHHhhhcc---CCC----HHHHHHHHHHcCCHHHHHhCc----c----------
Confidence 4567999999998885 5 8999985321 111 123455666677643211110 0
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+..+. +++ ....+|+|++|++.|+++
T Consensus 127 ------------------------------~l~~~---~~~---------------------~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 127 ------------------------------QLDFV---LVD---------------------GGCVLSHGHKQLMCLARS 152 (275)
T ss_pred ------------------------------cccce---ecC---------------------CCCCCCHHHHHHHHHHHH
Confidence 00000 011 123589999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +++++|+|||..+-+..... .+.+.|.+.. .++++++.+|+++... .+.++.++.
T Consensus 153 ll~------~p~illlDEpts~LD~~~~~-----------~l~~~l~~~~-~~~tii~isH~~~~i~--~~dri~vl~ 210 (275)
T cd03289 153 VLS------KAKILLLDEPSAHLDPITYQ-----------VIRKTLKQAF-ADCTVILSEHRIEAML--ECQRFLVIE 210 (275)
T ss_pred Hhc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEECCHHHHH--hCCEEEEec
Confidence 999 99999999998776555442 4555555443 3788999999987543 367777764
No 287
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.77 E-value=1.1e-19 Score=174.28 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=123.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccc-c
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKV-R 148 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~-~ 148 (541)
+.++|++++|+++.+|+++||++ +|+|||||||||||++|++. +.+|+|. ++|+.+ ..... .
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~---~~g~~~----~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL---FKGEDI----TDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE---ECCEEC----CcCCHHH
Confidence 46889999998888999999999 99999999999999999664 6789999 888732 21111 1
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+..++|++|+..+++.. ++.+++ .
T Consensus 74 ~~~~~i~~v~q~~~~~~~~------~~~~~l------------------------------------------~------ 99 (200)
T cd03217 74 RARLGIFLAFQYPPEIPGV------KNADFL------------------------------------------R------ 99 (200)
T ss_pred HhhCcEEEeecChhhccCc------cHHHHH------------------------------------------h------
Confidence 1234589999987776655 544322 0
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.....+|+|++|++.|++
T Consensus 100 --------------------------------------------------------------~~~~~LS~G~~qrv~lar 117 (200)
T cd03217 100 --------------------------------------------------------------YVNEGFSGGEKKRNEILQ 117 (200)
T ss_pred --------------------------------------------------------------hccccCCHHHHHHHHHHH
Confidence 001247899999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..+.. .+.+.|.+..+.++++++.+|+.+.....+..++.++.
T Consensus 118 al~~------~p~illlDEPt~~LD~~~~~-----------~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~ 179 (200)
T cd03217 118 LLLL------EPDLAILDEPDSGLDIDALR-----------LVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLY 179 (200)
T ss_pred HHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEE
Confidence 9998 99999999998876655443 56666666555578999999998854321466666663
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.77 E-value=2.4e-19 Score=178.85 Aligned_cols=201 Identities=14% Similarity=0.086 Sum_probs=136.8
Q ss_pred CCCceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 76 DRDYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
..+.|.++++++.|++ +.+|+++||+| +|+|+|||||||||++|+| .+.+|+|. ++|..+ ...
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---i~g~~i----~~~ 88 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDGIDI----SKL 88 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE---ECCEEh----hhC
Confidence 3467899999999986 57999999999 9999999999999999955 46789999 888732 222
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.....++.++|++|+..+++ . |+++|+.+... . ....+..++..+++..
T Consensus 89 ~~~~~~~~i~~v~q~~~l~~-~------tv~~nl~~~~~---~----~~~~~~~~l~~~~l~~----------------- 137 (257)
T cd03288 89 PLHTLRSRLSIILQDPILFS-G------SIRFNLDPECK---C----TDDRLWEALEIAQLKN----------------- 137 (257)
T ss_pred CHHHHhhhEEEECCCCcccc-c------HHHHhcCcCCC---C----CHHHHHHHHHHhCcHH-----------------
Confidence 22233557999999987664 5 78888764310 0 0112233343333321
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhc--ccccCCCCCCCCCCCCCCcc
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~--~~~~~~~~~~~~ls~g~~q~ 303 (541)
+++.+. ... ..+.....+|+|++|+
T Consensus 138 ----------------------------------------------------~~~~~~~~l~~-~~~~~~~~LS~G~~qr 164 (257)
T cd03288 138 ----------------------------------------------------MVKSLPGGLDA-VVTEGGENFSVGQRQL 164 (257)
T ss_pred ----------------------------------------------------HHhhcccccCc-EeccCCCcCCHHHHHH
Confidence 111110 000 1122355689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..... .+.+++.+.. .+.++++.+|+.+.... ..++
T Consensus 165 l~laral~~------~p~llllDEPt~gLD~~~~~-----------~l~~~l~~~~-~~~tiii~sh~~~~~~~--~dri 224 (257)
T cd03288 165 FCLARAFVR------KSSILIMDEATASIDMATEN-----------ILQKVVMTAF-ADRTVVTIAHRVSTILD--ADLV 224 (257)
T ss_pred HHHHHHHhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHhc-CCCEEEEEecChHHHHh--CCEE
Confidence 999999998 99999999998886654432 5556665543 36888999999886653 5666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 225 ~~l~ 228 (257)
T cd03288 225 LVLS 228 (257)
T ss_pred EEEE
Confidence 6553
No 289
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.77 E-value=2e-19 Score=201.47 Aligned_cols=198 Identities=20% Similarity=0.227 Sum_probs=144.6
Q ss_pred Cceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 78 DYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 78 ~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
+.+.++|+++.|+. +.+|+++||++ +|+|||||||||||++|++ .+..|+|. ++|+. +...
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~---~~g~~----i~~~ 75 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR---VAGQD----VATL 75 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEE----cCcC
Confidence 46899999999963 46999999999 9999999999999999954 56789999 88872 2221
Q ss_pred ccc----cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 146 KVR----GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 146 ~~~----~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
... .+++.++|++|+..+++++ |+.||+.+.....+....+..+++.++++.+|+.+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~l~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~------------- 136 (648)
T PRK10535 76 DADALAQLRREHFGFIFQRYHLLSHL------TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED------------- 136 (648)
T ss_pred CHHHHHHHHhccEEEEeCCcccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------------
Confidence 111 1245799999999999999 99999987522112222333445556666665532
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
..+..+..+|+|++
T Consensus 137 ------------------------------------------------------------------~~~~~~~~LS~Gq~ 150 (648)
T PRK10535 137 ------------------------------------------------------------------RVEYQPSQLSGGQQ 150 (648)
T ss_pred ------------------------------------------------------------------hhcCCcccCCHHHH
Confidence 11233456899999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +|+++|+|||..|.+..... .+.+++.+..+.++++++.+|+.++... +.
T Consensus 151 qrv~LAraL~~------~P~lLllDEP~~gLD~~s~~-----------~l~~ll~~l~~~g~tilivsH~~~~~~~--~d 211 (648)
T PRK10535 151 QRVSIARALMN------GGQVILADEPTGALDSHSGE-----------EVMAILHQLRDRGHTVIIVTHDPQVAAQ--AE 211 (648)
T ss_pred HHHHHHHHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEECCCHHHHHh--CC
Confidence 99999999999 99999999998776655543 5666776665568899999999886642 44
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 212 ~i~~l 216 (648)
T PRK10535 212 RVIEI 216 (648)
T ss_pred EEEEE
Confidence 44433
No 290
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.77 E-value=1.4e-19 Score=204.95 Aligned_cols=202 Identities=19% Similarity=0.224 Sum_probs=142.9
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.++||+++|++ +++|+|+||+| ||+||||||||||+++|++ .+.+|+|. ++|. ++.....
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~---idg~----~l~~~~~ 534 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL---LDGV----DIRQIDP 534 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCE----EhhhCCH
Confidence 46999999999964 56999999999 9999999999999999944 67789999 8887 3333334
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.+|. - |++||+.+++. .. ..+.+.++++.+|+...-. .+ +
T Consensus 535 ~~lr~~i~~v~Q~~~lf~-~------TI~eNi~~~~~--~~----~~~~i~~a~~~~~l~~~i~--------~l--p--- 588 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFY-G------TLRDNIALGAP--YA----DDEEILRAAELAGVTEFVR--------RH--P--- 588 (694)
T ss_pred HHHHhccEEECCChhhhh-h------hHHHHHhCCCC--CC----CHHHHHHHHHHcChHHHHH--------hC--c---
Confidence 455678999999999884 3 89999998731 11 1234555666666543111 00 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|++- .+|+. -..+|+||+|+++|+
T Consensus 589 -------------------------------~gl~T---~i~e~---------------------G~~LSgGQrQRlalA 613 (694)
T TIGR03375 589 -------------------------------DGLDM---QIGER---------------------GRSLSGGQRQAVALA 613 (694)
T ss_pred -------------------------------ccccc---eecCC---------------------CCCCCHHHHHHHHHH
Confidence 00000 01111 235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+. +++++|+|||+.+-+..++. ++.+.|.+.. .++|+++.+|.++.. +...++.+++
T Consensus 614 Rall~------~p~iliLDE~Ts~LD~~te~-----------~i~~~l~~~~-~~~T~iiItHrl~~~--~~~D~iivl~ 673 (694)
T TIGR03375 614 RALLR------DPPILLLDEPTSAMDNRSEE-----------RFKDRLKRWL-AGKTLVLVTHRTSLL--DLVDRIIVMD 673 (694)
T ss_pred HHHhc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHh-CCCEEEEEecCHHHH--HhCCEEEEEe
Confidence 99999 99999999998776555443 5555555443 378999999988654 3456666664
No 291
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.77 E-value=1.5e-19 Score=216.77 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=143.0
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHh--cCC-----------------------
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSD----------------------- 123 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~----------------------- 123 (541)
+.|+|+||+++|++ .++|+|+||+| ||+||||||||||+++|+ ..+
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 46999999999963 47999999999 999999999999999993 344
Q ss_pred -------------------------------CCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccC
Q psy91 124 -------------------------------LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLF 172 (541)
Q Consensus 124 -------------------------------~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~ 172 (541)
.+|+|+ ++|. ++.......+++.+|||+|++.||. .
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~---idG~----di~~~~~~~lR~~i~~V~Qep~LF~-g----- 1310 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKIL---LDGV----DICDYNLKDLRNLFSIVSQEPMLFN-M----- 1310 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEE---ECCE----EHHhCCHHHHHhhccEeCCCCcccc-c-----
Confidence 478888 8887 3333344556778999999999984 4
Q ss_pred CCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchh
Q psy91 173 QTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQV 252 (541)
Q Consensus 173 qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~ 252 (541)
|++||+.|++ + .. ..+.+..+++..++...-. .+ |+ ||.+
T Consensus 1311 -TIreNI~~g~-~-~a----t~eeI~~A~k~A~l~~fI~--------~L--P~------------------GydT----- 1350 (1466)
T PTZ00265 1311 -SIYENIKFGK-E-DA----TREDVKRACKFAAIDEFIE--------SL--PN------------------KYDT----- 1350 (1466)
T ss_pred -cHHHHHhcCC-C-CC----CHHHHHHHHHHcCCHHHHH--------hC--cc------------------ccCC-----
Confidence 8999999983 2 11 2234556666666543211 00 00 0000
Q ss_pred hhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 253 HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 253 ~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+|+.| ..+||||+||++|+|+++. +|+++|+|||+...
T Consensus 1351 --------------~VGe~G---------------------~~LSGGQkQRIaIARALlr------~p~ILLLDEaTSaL 1389 (1466)
T PTZ00265 1351 --------------NVGPYG---------------------KSLSGGQKQRIAIARALLR------EPKILLLDEATSSL 1389 (1466)
T ss_pred --------------ccCCCC---------------------CcCCHHHHHHHHHHHHHhc------CCCEEEEeCccccc
Confidence 122222 3589999999999999999 99999999997665
Q ss_pred Cccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEcC
Q psy91 333 SINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVDT 388 (541)
Q Consensus 333 ~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIpv 388 (541)
+..++. .+.+.|.+.. ..++|+++..|.+.. .+...++.+++-
T Consensus 1390 D~~sE~-----------~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1390 DSNSEK-----------LIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNN 1433 (1466)
T ss_pred CHHHHH-----------HHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeC
Confidence 544443 4445555443 357999999988643 345667777753
No 292
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.77 E-value=3e-19 Score=194.79 Aligned_cols=197 Identities=14% Similarity=0.200 Sum_probs=138.8
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++|+++ .+|+++||+| +|+|||||||||||++|+| .+++|+|. ++|..+.. ......
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~---~~g~~i~~---~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVT---LDGHEVVT---RSPQDG 324 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEE---ECCEECCC---CCHHHH
Confidence 4689999985 3799999999 9999999999999999955 46789999 88873211 111112
Q ss_pred ccccEEEEeCCC---ccccccccccCCCcccceecccccc--c----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 150 RQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPE--Q----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 150 ~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~--~----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.++.+|||+|+. .+++.+ |+.+|+.++.... . .......+.+..+++.+|+..
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------ 386 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGM------SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------------ 386 (501)
T ss_pred HHCCCEEecCccccCCCcCCC------cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------------
Confidence 344699999995 578888 9999998752110 0 111122233444455444421
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
...++.+..+|+|+
T Consensus 387 ------------------------------------------------------------------~~~~~~~~~LSgGe 400 (501)
T PRK10762 387 ------------------------------------------------------------------PSMEQAIGLLSGGN 400 (501)
T ss_pred ------------------------------------------------------------------CCccCchhhCCHHH
Confidence 12344566799999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||..|-+..+.. .+.+.|.+..+.+.++++.+|+++... .++
T Consensus 401 kqrv~lA~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tviivtHd~~~~~-~~~ 462 (501)
T PRK10762 401 QQKVAIARGLMT------RPKVLILDEPTRGVDVGAKK-----------EIYQLINQFKAEGLSIILVSSEMPEVL-GMS 462 (501)
T ss_pred HHHHHHHHHHhh------CCCEEEEcCCCCCCCHhHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-hhC
Confidence 999999999998 99999999998887665553 666677766556889999999987543 356
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 463 d~v~~l~ 469 (501)
T PRK10762 463 DRILVMH 469 (501)
T ss_pred CEEEEEE
Confidence 6666663
No 293
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.77 E-value=1.9e-19 Score=176.51 Aligned_cols=177 Identities=18% Similarity=0.181 Sum_probs=125.2
Q ss_pred eecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccc
Q psy91 95 KKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPS 166 (541)
Q Consensus 95 L~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~ 166 (541)
|+++||+| +|+||||||||||+++|+| .+.+|+|. ++|..+ .... ...+|++|+..+++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~-----~~~~~v~q~~~l~~~ 68 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVI---LEGKQI----TEPG-----PDRMVVFQNYSLLPW 68 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEC----CCCC-----hhheEEecCcccCCC
Confidence 46888888 9999999999999999955 46789999 888722 1111 124899999999998
Q ss_pred cccccCCCcccceecccc--ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCee
Q psy91 167 LIGSLFQTDRDYIGFATL--PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIG 244 (541)
Q Consensus 167 lig~~~qtv~e~l~~~~~--~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG 244 (541)
+ |+.+|+.++.. .......+..+.+..+++.+|+.+
T Consensus 69 ~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------------------------------ 106 (230)
T TIGR01184 69 L------TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE------------------------------------ 106 (230)
T ss_pred C------CHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHH------------------------------------
Confidence 8 99999887511 011222233334555566555532
Q ss_pred EeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEE
Q psy91 245 FATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324 (541)
Q Consensus 245 ~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I 324 (541)
..+..+..+|+|++|++.|+++++. +++++|
T Consensus 107 -------------------------------------------~~~~~~~~LSgG~~qrv~la~al~~------~p~lll 137 (230)
T TIGR01184 107 -------------------------------------------AADKRPGQLSGGMKQRVAIARALSI------RPKVLL 137 (230)
T ss_pred -------------------------------------------HHcCChhhCCHHHHHHHHHHHHHHc------CCCEEE
Confidence 1122345689999999999999998 999999
Q ss_pred EcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 325 VDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 325 ~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+|||..|-+..+.. .+.+.|.+..+. ++++++.+|+++... .+..++.++
T Consensus 138 LDEPt~gLD~~~~~-----------~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~~d~v~~l 188 (230)
T TIGR01184 138 LDEPFGALDALTRG-----------NLQEELMQIWEEHRVTVLMVTHDVDEAL-LLSDRVVML 188 (230)
T ss_pred EcCCCcCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhcCEEEEE
Confidence 99998887665553 667777766553 788999999877432 344555555
No 294
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.77 E-value=2.6e-19 Score=198.70 Aligned_cols=202 Identities=13% Similarity=0.142 Sum_probs=139.5
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.++|++++|++ +.+|+++||++ ||+||||||||||+++|++ .+.+|+|. ++|. ........
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~---~~g~----~~~~~~~~ 405 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL---IDGI----DINTVTRE 405 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE---ECCE----EhhhCCHH
Confidence 45999999999975 57999999999 9999999999999999944 57789999 8787 32222233
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|+..+++ . |++||+.++. +. .+. +.+..++..+|+... +.....|++.
T Consensus 406 ~~~~~i~~v~q~~~lf~-~------ti~~Ni~~~~-~~-~~~----~~~~~a~~~~~~~~~----i~~l~~g~~t----- 463 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFN-R------SIRENIRLGR-EG-ATD----EEVYEAAKAAAAHDF----ILKRSNGYDT----- 463 (585)
T ss_pred HHHhheEEEccCCccCc-c------cHHHHHhcCC-CC-CCH----HHHHHHHHHhCcHHH----HHhccccccc-----
Confidence 45567999999988874 5 8999999873 11 111 223334444444321 0000000000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
........+|+|++|++.|++
T Consensus 464 -----------------------------------------------------------~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 464 -----------------------------------------------------------LVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred -----------------------------------------------------------hhcCCCCCCCHHHHHHHHHHH
Confidence 001123468999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.+-+..+.. .+.+.|.+. ..++++++.+|+.+... ...++.+++
T Consensus 485 all~------~p~ililDEpts~LD~~~~~-----------~i~~~l~~~-~~~~tvI~isH~~~~~~--~~d~i~~l~ 543 (585)
T TIGR01192 485 AILK------NAPILVLDEATSALDVETEA-----------RVKNAIDAL-RKNRTTFIIAHRLSTVR--NADLVLFLD 543 (585)
T ss_pred HHhc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHH-hCCCEEEEEEcChHHHH--cCCEEEEEE
Confidence 9999 99999999998886665553 555555544 34789999999876543 356666653
No 295
>KOG0065|consensus
Probab=99.77 E-value=5.7e-19 Score=200.12 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=140.3
Q ss_pred cccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcc
Q psy91 90 HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVL 163 (541)
Q Consensus 90 ~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l 163 (541)
+.+.+|+||++-+ ||||+|||||||||++|+++...|.|. |.+++.+.+... ..++|.+|||.|++.-
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~-----Gdi~i~G~p~~q-~tF~R~~GYvqQ~DiH 875 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIE-----GDILISGFPKDQ-ETFARVSGYVEQQDIH 875 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEE-----eEEEECCeeCch-hhhccccceeeccccc
Confidence 5578999999988 999999999999999999988766554 553333222221 3567789999999999
Q ss_pred ccccccccCCCcccceecc---ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCC
Q psy91 164 TPSLIGSLFQTDRDYIGFA---TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPY 240 (541)
Q Consensus 164 ~~~lig~~~qtv~e~l~~~---~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~ 240 (541)
.+.+ ||+|.+.|+ |++..++.++..+.++++++.++|..+++..++
T Consensus 876 ~~~~------TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG------------------------- 924 (1391)
T KOG0065|consen 876 SPEL------TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG------------------------- 924 (1391)
T ss_pred Cccc------chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc-------------------------
Confidence 9999 999999998 777788888888999999999999876555433
Q ss_pred CCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee
Q psy91 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320 (541)
Q Consensus 241 ~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~ 320 (541)
..|. .+|..|+++++|+..++. +|
T Consensus 925 -----------------------------~~G~---------------------GLs~eQRKrLTIgVELvA------~P 948 (1391)
T KOG0065|consen 925 -----------------------------LPGS---------------------GLSTEQRKRLTIGVELVA------NP 948 (1391)
T ss_pred -----------------------------CCCC---------------------CCCHHHhceeeEEEEEec------CC
Confidence 2221 245568899999999988 89
Q ss_pred -eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchh
Q psy91 321 -RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDI 374 (541)
Q Consensus 321 -~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di 374 (541)
.|+++|||+.|.+... +| -+.++++.....|++++...|...+
T Consensus 949 ~~ilFLDEPTSGLDsqa--A~---------~i~~~lrkla~tGqtIlCTIHQPS~ 992 (1391)
T KOG0065|consen 949 SSILFLDEPTSGLDSQA--AA---------IVMRFLRKLADTGQTILCTIHQPSI 992 (1391)
T ss_pred ceeEEecCCCCCccHHH--HH---------HHHHHHHHHHhcCCeEEEEecCCcH
Confidence 8999999999865433 23 3556677777889998887776543
No 296
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=3e-19 Score=196.76 Aligned_cols=202 Identities=16% Similarity=0.151 Sum_probs=140.4
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.++|++++|++ +.+|+++||++ +|+||||||||||+++|+| .+.+|+|. ++|.. +.....
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~---~~g~~----i~~~~~ 387 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR---LDGAD----LKQWDR 387 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEe----hhhCCH
Confidence 46999999999964 57999999999 9999999999999999944 57789999 88873 222223
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.+++ - |++||+.++. + ..+. +.+..+++..++...
T Consensus 388 ~~~~~~i~~v~q~~~lf~-~------ti~~Ni~~~~-~-~~~~----~~~~~~~~~~~~~~~------------------ 436 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFP-G------TVAENIARFG-E-NADP----EKIIEAAKLAGVHEL------------------ 436 (544)
T ss_pred HHHhhheEEecCCccccc-c------cHHHHHhccC-C-CCCH----HHHHHHHHHhChHHH------------------
Confidence 345568999999988874 4 8999998652 1 1111 223334444444321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcc-cccCCCCCCCCCCCCCCcceEE
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~-~~~~~~~~~~~ls~g~~q~v~I 306 (541)
++.|-. -+.........+|+|++|+++|
T Consensus 437 ---------------------------------------------------i~~l~~gl~t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 437 ---------------------------------------------------ILRLPDGYDTVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred ---------------------------------------------------HHhCccccccccCCCcCCCCHHHHHHHHH
Confidence 111100 0000111234689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++.+. +++++|+|||+.+-+..+.. ++.+.|.+....++++++.+|..+... ...++.++
T Consensus 466 ARall~------~~~ililDEpts~LD~~~~~-----------~i~~~l~~~~~~~~tvi~ith~~~~~~--~~d~i~~l 526 (544)
T TIGR01842 466 ARALYG------DPKLVVLDEPNSNLDEEGEQ-----------ALANAIKALKARGITVVVITHRPSLLG--CVDKILVL 526 (544)
T ss_pred HHHHhc------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHhhCCCEEEEEeCCHHHHH--hCCEEEEE
Confidence 999999 99999999998776655543 666666665545789999999987543 45666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
+
T Consensus 527 ~ 527 (544)
T TIGR01842 527 Q 527 (544)
T ss_pred E
Confidence 4
No 297
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.77 E-value=2e-19 Score=195.74 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=138.1
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-C--CCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-D--LYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~--~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. + ..|+|+ ++|+.+. .....
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~---~~g~~~~---~~~~~ 331 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLT---LFGRRRG---SGETI 331 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEE---EecccCC---CCCCH
Confidence 35799999999999888999999999 99999999999999999664 2 379999 8887321 11111
Q ss_pred ccccccEEEEeCCCccccc--cccccCCCcccceecccccc----chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 148 RGRQYPWGVVEGSTVLTPS--LIGSLFQTDRDYIGFATLPE----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~--lig~~~qtv~e~l~~~~~~~----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
...++.++|++|+..+++. . ++.+++.++.... ........+.+..+++.+|+.+
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------- 392 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVST------SVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK------------- 392 (490)
T ss_pred HHHHhhceEECHHHHhhcccCC------cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch-------------
Confidence 1234578999998655432 3 4554443321100 0001111223444455444421
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
.+.++.+..+|+|++
T Consensus 393 -----------------------------------------------------------------~~~~~~~~~LSgGq~ 407 (490)
T PRK10938 393 -----------------------------------------------------------------RTADAPFHSLSWGQQ 407 (490)
T ss_pred -----------------------------------------------------------------hhccCchhhCCHHHH
Confidence 022345667999999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCc-ceeeccccchhhhhccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGK-TTTIEKKSMDIEERGVK 380 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~r-t~~i~~~~~di~~~~l~ 380 (541)
|++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+.+. ++++.+|+.+.....++
T Consensus 408 qrv~la~al~~------~p~lllLDEPt~gLD~~~~~-----------~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~ 470 (490)
T PRK10938 408 RLALIVRALVK------HPTLLILDEPLQGLDPLNRQ-----------LVRRFVDVLISEGETQLLFVSHHAEDAPACIT 470 (490)
T ss_pred HHHHHHHHHhc------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHhcCCcEEEEEecchhhhhhhhh
Confidence 99999999998 99999999998887765553 67777777765554 58899999876654455
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 471 d~v~~l 476 (490)
T PRK10938 471 HRLEFV 476 (490)
T ss_pred eeEEEe
Confidence 666665
No 298
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.77 E-value=2.8e-19 Score=198.08 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=143.9
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++|++++|++ +.+|+|+||++ ||+||||||||||+++|++ .+.+|+|. ++|. .+.....
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~---i~g~----~i~~~~~ 409 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL---LNGQ----PIADYSE 409 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCE----EhhhCCH
Confidence 46999999999964 46999999999 9999999999999999944 57889999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.++||+|+..+|+ - |++||+.++. + ....+.+..+++.+|+.+.-.+ +
T Consensus 410 ~~~r~~i~~v~Q~~~lf~-~------ti~~Ni~~~~-~-----~~~~~~i~~al~~~~l~~~i~~-----------p--- 462 (574)
T PRK11160 410 AALRQAISVVSQRVHLFS-A------TLRDNLLLAA-P-----NASDEALIEVLQQVGLEKLLED-----------D--- 462 (574)
T ss_pred HHHHhheeEEcccchhhc-c------cHHHHhhcCC-C-----ccCHHHHHHHHHHcCCHHHHcC-----------c---
Confidence 455678999999998884 4 8999999873 1 1123456667777777542111 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|.+- .+|+ ....+|+|++|+++|+
T Consensus 463 -------------------------------~GldT---~vge---------------------~g~~LSgGqrqRialA 487 (574)
T PRK11160 463 -------------------------------KGLNA---WLGE---------------------GGRQLSGGEQRRLGIA 487 (574)
T ss_pred -------------------------------cccCc---hhcC---------------------CCCCCCHHHHHHHHHH
Confidence 00000 0111 1235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..++. ++.+.|.+.. .++|+++.+|...... ...++.+++
T Consensus 488 Rall~------~~~ililDE~ts~lD~~t~~-----------~i~~~l~~~~-~~~tviiitHr~~~~~--~~d~i~~l~ 547 (574)
T PRK11160 488 RALLH------DAPLLLLDEPTEGLDAETER-----------QILELLAEHA-QNKTVLMITHRLTGLE--QFDRICVMD 547 (574)
T ss_pred HHHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEecChhHHH--hCCEEEEEe
Confidence 99999 99999999998776655543 5555665553 4789999998876443 345555553
No 299
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.2e-19 Score=192.91 Aligned_cols=197 Identities=13% Similarity=0.178 Sum_probs=139.4
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..+.+++++.. .+|+++||+| ||+|||||||||||++|+| .+.+|+|+ ++|+.+.. ......
T Consensus 256 ~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~---~~g~~~~~---~~~~~~ 325 (501)
T PRK11288 256 VRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVY---LDGKPIDI---RSPRDA 325 (501)
T ss_pred cEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEE---ECCEECCC---CCHHHH
Confidence 35888898743 5899999999 9999999999999999955 46789999 88873211 111112
Q ss_pred ccccEEEEeCCC---ccccccccccCCCcccceeccccccc------hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 150 RQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPEQ------VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 150 ~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~~------~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.+..++|++|+. .+++.+ |+.+|+.++..... .......+.+..+++.+|+.
T Consensus 326 ~~~~i~~~~q~~~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------- 386 (501)
T PRK11288 326 IRAGIMLCPEDRKAEGIIPVH------SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------------- 386 (501)
T ss_pred HhCCCEEcCcCHhhCCCcCCC------CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc-------------
Confidence 345789999985 488888 99999887521110 01111112333344444431
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
....++.+..+|+|+
T Consensus 387 -----------------------------------------------------------------~~~~~~~~~~LSgGq 401 (501)
T PRK11288 387 -----------------------------------------------------------------TPSREQLIMNLSGGN 401 (501)
T ss_pred -----------------------------------------------------------------cCCccCccccCCHHH
Confidence 112345677899999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++|+|+|||..|.+..+.. ++.+++.+..+.+.++++.+|+++... .++
T Consensus 402 ~qrl~la~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~l~~~g~tviivsHd~~~~~-~~~ 463 (501)
T PRK11288 402 QQKAILGRWLSE------DMKVILLDEPTRGIDVGAKH-----------EIYNVIYELAAQGVAVLFVSSDLPEVL-GVA 463 (501)
T ss_pred HHHHHHHHHHcc------CCCEEEEcCCCCCCCHhHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-hhC
Confidence 999999999998 99999999998887766654 677777777667889999999987654 355
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 464 d~i~~l 469 (501)
T PRK11288 464 DRIVVM 469 (501)
T ss_pred CEEEEE
Confidence 666655
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.4e-19 Score=194.77 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=133.6
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++|++++|+++++|+++||+| +|+|||||||||||++|+| .++.|+|. ++|.
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~---~~~~--------------- 63 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVS---LDPN--------------- 63 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ecCC---------------
Confidence 68899999999889999999999 9999999999999999966 45677777 5542
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCcc---chhhhhhhccccccCCCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLG---KSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~---ks~l~~~l~gl~~~~~~~ 228 (541)
..+||++|+..+++.+ ||.+++.++.... . ........+ .+..... ..++...........
T Consensus 64 ~~i~~~~q~~~~~~~~------tv~e~l~~~~~~~--~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--- 127 (530)
T PRK15064 64 ERLGKLRQDQFAFEEF------TVLDTVIMGHTEL--W--EVKQERDRI---YALPEMSEEDGMKVADLEVKFAEMD--- 127 (530)
T ss_pred CEEEEEeccCCcCCCC------cHHHHHHHhhHHH--H--HHHHHHHHH---hcccccccchHHHHHHHHHHHHhcC---
Confidence 2489999999888888 9999998762100 0 000000000 0000000 000000000000000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++ .. ... -..++..+.......+..+..+|+|++|++.|++
T Consensus 128 ---------------~~-----~~-~~~------------------~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~ 168 (530)
T PRK15064 128 ---------------GY-----TA-EAR------------------AGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQ 168 (530)
T ss_pred ---------------ch-----hH-HHH------------------HHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHH
Confidence 00 00 000 0123444433322234457789999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.|.+..+.. .+.++|.+ .+.++++.+|+.+... .+..++.++.
T Consensus 169 aL~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~---~~~tiiivsHd~~~~~-~~~d~i~~l~ 226 (530)
T PRK15064 169 ALFS------NPDILLLDEPTNNLDINTIR-----------WLEDVLNE---RNSTMIIISHDRHFLN-SVCTHMADLD 226 (530)
T ss_pred HHhc------CCCEEEEcCCCcccCHHHHH-----------HHHHHHHh---CCCeEEEEeCCHHHHH-hhcceEEEEe
Confidence 9998 99999999998876655543 44444442 3678999999988543 3555665554
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=5.4e-19 Score=194.96 Aligned_cols=215 Identities=16% Similarity=0.171 Sum_probs=133.7
Q ss_pred CCceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.|+++||++.|+ ++.+|++|||+| +|+|||||||||||++|+|. ++.|+|. +++.
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~---~~~~----------- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR---PAPG----------- 69 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ecCC-----------
Confidence 34789999999998 788999999999 99999999999999999664 5667776 4321
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCc-cc------hhhhhhhcc
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGL-GK------STLVNSLFL 220 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~-~k------s~l~~~l~g 220 (541)
..+|||+|++.+++.+ ||.+|+.++.... ... ...........+...- .. ..+...+..
T Consensus 70 ----~~i~~v~Q~~~~~~~~------tv~e~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (556)
T PRK11819 70 ----IKVGYLPQEPQLDPEK------TVRENVEEGVAEV--KAA--LDRFNEIYAAYAEPDADFDALAAEQGELQEIIDA 135 (556)
T ss_pred ----CEEEEEecCCCCCCCC------cHHHHHHHhhHHH--HHH--HHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh
Confidence 3589999999999999 9999998762100 000 0000000000000000 00 000000000
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
...+ . ..+ --..++..+.+. ..++.+..+|+|+
T Consensus 136 ~~~~---~----------------------------~~~--------------~~~~~l~~~gl~--~~~~~~~~LSgGq 168 (556)
T PRK11819 136 ADAW---D----------------------------LDS--------------QLEIAMDALRCP--PWDAKVTKLSGGE 168 (556)
T ss_pred cCcc---c----------------------------hHH--------------HHHHHHHhCCCC--cccCchhhcCHHH
Confidence 0000 0 000 001233333332 1355677899999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||+.|.+..... .+.++|.+. ..++++.+|+.+... .++
T Consensus 169 kqrv~la~al~~------~p~vlLLDEPt~~LD~~~~~-----------~l~~~L~~~---~~tviiisHd~~~~~-~~~ 227 (556)
T PRK11819 169 RRRVALCRLLLE------KPDMLLLDEPTNHLDAESVA-----------WLEQFLHDY---PGTVVAVTHDRYFLD-NVA 227 (556)
T ss_pred HHHHHHHHHHhC------CCCEEEEcCCCCcCChHHHH-----------HHHHHHHhC---CCeEEEEeCCHHHHH-hhc
Confidence 999999999998 99999999998877665553 444455443 248889999887544 345
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 228 d~i~~l~ 234 (556)
T PRK11819 228 GWILELD 234 (556)
T ss_pred CeEEEEe
Confidence 5665554
No 302
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.76 E-value=6e-19 Score=170.18 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=130.2
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.+++++++|+. +.+|+++||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ .....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~---~~g~~~----~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE---IDGIDI----STIPL 77 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE---ECCEEh----HHCCH
Confidence 46899999999975 47999999999 9999999999999999955 56789999 888732 21122
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++|++|+..+++ . |+.+|+.+.. ..... .+..++.
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~------tv~~~l~~~~---~~~~~----~~~~~l~------------------------- 118 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-G------TIRSNLDPFD---EYSDE----EIYGALR------------------------- 118 (207)
T ss_pred HHHHhhEEEEecCCcccC-c------cHHHHhcccC---CCCHH----HHHHHhh-------------------------
Confidence 223457999999987664 6 8988886531 01000 0000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+..+..+|+|++|++.|+
T Consensus 119 -------------------------------------------------------------~~~~~~~LS~G~~qrv~la 137 (207)
T cd03369 119 -------------------------------------------------------------VSEGGLNLSQGQRQLLCLA 137 (207)
T ss_pred -------------------------------------------------------------ccCCCCcCCHHHHHHHHHH
Confidence 0123456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||..|-+..... .+.++|.+.. .++++++.+|+.+.... ..++.++
T Consensus 138 ral~~------~p~llllDEP~~~LD~~~~~-----------~l~~~l~~~~-~~~tiii~th~~~~~~~--~d~v~~l 196 (207)
T cd03369 138 RALLK------RPRVLVLDEATASIDYATDA-----------LIQKTIREEF-TNSTILTIAHRLRTIID--YDKILVM 196 (207)
T ss_pred HHHhh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 99998 99999999998876654432 5666666653 37889999999886543 4566555
No 303
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.76 E-value=3.2e-19 Score=197.83 Aligned_cols=203 Identities=19% Similarity=0.203 Sum_probs=142.7
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
..|.++||+++|.+ +++|+++||++ +|+|+||||||||+++|+| .+..|+|+ ++|. .+.....
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~---i~g~----~i~~~~~ 401 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL---LDGH----DLADYTL 401 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE---ECCE----eHHhcCH
Confidence 46999999999964 56999999999 9999999999999999955 57789999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.++. - |++||+.++.. .. ...+.+.+++..+|+...-... =.|++.
T Consensus 402 ~~~~~~i~~v~Q~~~lf~-~------Ti~~Ni~~~~~-~~----~~~~~i~~~l~~~~l~~~i~~l----p~gldt---- 461 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFN-D------TIANNIAYGRT-EQ----ADRAEIERALAAAYAQDFVDKL----PLGLDT---- 461 (571)
T ss_pred HHHHhhceEEccCccccc-c------cHHHHHhcCCC-CC----CCHHHHHHHHHHcChHHHHHhC----cCcccc----
Confidence 455678999999998883 2 89999998731 11 1233466667777765421100 000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+ .-..+|+||+|+++|+
T Consensus 462 ---------------------------------------~i~~---------------------~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 462 ---------------------------------------PIGE---------------------NGVLLSGGQRQRLAIA 481 (571)
T ss_pred ---------------------------------------eecC---------------------CCCcCCHHHHHHHHHH
Confidence 0011 1235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+.+. +++++|+|||+.+-+..+.. .+.+.|.+. ..++++++.+|+..... .+.++.+++
T Consensus 482 Rall~------~~~illLDEpts~LD~~~~~-----------~i~~~L~~~-~~~~tiIiitH~~~~~~--~~D~ii~l~ 541 (571)
T TIGR02203 482 RALLK------DAPILILDEATSALDNESER-----------LVQAALERL-MQGRTTLVIAHRLSTIE--KADRIVVMD 541 (571)
T ss_pred HHHhc------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHH-hCCCEEEEEehhhHHHH--hCCEEEEEe
Confidence 99999 99999999997776555543 556666554 34689999999876543 455555553
No 304
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.76 E-value=3.6e-19 Score=197.64 Aligned_cols=202 Identities=19% Similarity=0.242 Sum_probs=141.3
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.|.++||+++|++ +.+|+|+||++ ||+||||||||||+++|+| .+..|+|. ++|. .+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~---i~g~----~i~~~~ 408 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL---LDGV----DLRQLD 408 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE---ECCE----EHHhcC
Confidence 46999999999964 56999999999 9999999999999999954 56789999 8887 332222
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....++.++|++|++.+++. |++||+.++. +. .+ .+.+..+++.+|+...-++ + +
T Consensus 409 ~~~~~~~i~~~~Q~~~lf~~-------Ti~~Ni~~~~-~~-~~----~~~~~~~l~~~~l~~~i~~--------l--~-- 463 (576)
T TIGR02204 409 PAELRARMALVPQDPVLFAA-------SVMENIRYGR-PD-AT----DEEVEAAARAAHAHEFISA--------L--P-- 463 (576)
T ss_pred HHHHHHhceEEccCCccccc-------cHHHHHhcCC-CC-CC----HHHHHHHHHHcCcHHHHHh--------C--C--
Confidence 33455679999999988742 8999999873 11 11 2345566777776431111 0 0
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+|.+- .+|+ ....+|+|++|++++
T Consensus 464 --------------------------------~gl~t---~i~~---------------------~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 464 --------------------------------EGYDT---YLGE---------------------RGVTLSGGQRQRIAI 487 (576)
T ss_pred --------------------------------CCCCc---eeCC---------------------CCCcCCHHHHHHHHH
Confidence 00000 0011 123589999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++.+. +++++|+|||+.+-+..+.. .+.+.|.+.. .++++++.+|..+.. ....++.++
T Consensus 488 aRal~~------~~~ililDEpts~lD~~~~~-----------~i~~~l~~~~-~~~t~IiitH~~~~~--~~~d~vi~l 547 (576)
T TIGR02204 488 ARAILK------DAPILLLDEATSALDAESEQ-----------LVQQALETLM-KGRTTLIIAHRLATV--LKADRIVVM 547 (576)
T ss_pred HHHHHh------CCCeEEEeCcccccCHHHHH-----------HHHHHHHHHh-CCCEEEEEecchHHH--HhCCEEEEE
Confidence 999998 99999999998876655543 5555665553 478999999987543 345566555
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
+
T Consensus 548 ~ 548 (576)
T TIGR02204 548 D 548 (576)
T ss_pred E
Confidence 3
No 305
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=5e-19 Score=195.90 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=139.6
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.+++++++|+. +.+|+++|+++ +|+||||||||||+++|++ .|.+|+|. ++|. .......
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~---~~g~----~~~~~~~ 384 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR---FHDI----PLTKLQL 384 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE---ECCE----EHhhCCH
Confidence 46899999999964 56999999999 9999999999999999944 67889999 8887 3322233
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.+++ - |++||+.++... .+ .+.+..++..+|+... +..+ +
T Consensus 385 ~~~~~~i~~v~q~~~lf~-~------ti~~Ni~~~~~~--~~----~~~~~~~~~~~~l~~~--------i~~l--p--- 438 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFS-D------TVANNIALGRPD--AT----QQEIEHVARLASVHDD--------ILRL--P--- 438 (569)
T ss_pred HHHHhheEEEccCCeecc-c------cHHHHHhcCCCC--CC----HHHHHHHHHHcCCHHH--------HHhC--c---
Confidence 345668999999988874 4 899999987311 11 2234445555555321 0000 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|+ ++ ........+|+|++|++.|+
T Consensus 439 -------------------------------~gl------------------~t------~~~~~g~~LSgGq~qRi~lA 463 (569)
T PRK10789 439 -------------------------------QGY------------------DT------EVGERGVMLSGGQKQRISIA 463 (569)
T ss_pred -------------------------------Ccc------------------cc------eecCCCCcCCHHHHHHHHHH
Confidence 000 00 00112345899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+. +++++|+|||+.+-+..+.. ++.+.|.+.. .++|+++.+|..+... ...++.+++
T Consensus 464 Rall~------~~~illlDEpts~LD~~~~~-----------~i~~~l~~~~-~~~tii~itH~~~~~~--~~d~i~~l~ 523 (569)
T PRK10789 464 RALLL------NAEILILDDALSAVDGRTEH-----------QILHNLRQWG-EGRTVIISAHRLSALT--EASEILVMQ 523 (569)
T ss_pred HHHhc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHh-CCCEEEEEecchhHHH--cCCEEEEEe
Confidence 99999 99999999998876655543 5555555543 4789999999876543 345555553
No 306
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.75 E-value=2.4e-19 Score=184.63 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=125.2
Q ss_pred EEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceec
Q psy91 104 VVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 104 IiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
|+|||||||||||++|+| .+.+|+|. ++|+.+ .... ..++.++|++|+..+++++ ||.+|+.|
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~---i~g~~i----~~~~--~~~~~i~~v~q~~~l~~~~------tv~enl~~ 65 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIM---LDGEDV----TNVP--PHLRHINMVFQSYALFPHM------TVEENVAF 65 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEE---ECCEEC----CCCC--HHHCCEEEEecCccccCCC------cHHHHHHH
Confidence 689999999999999955 56789999 888732 2111 1245799999999999999 99999998
Q ss_pred cccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhcc
Q psy91 182 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGF 261 (541)
Q Consensus 182 ~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~ 261 (541)
+....+....+..+++..+++.+|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------------------------------------------- 92 (325)
T TIGR01187 66 GLKMRKVPRAEIKPRVLEALRLVQLEE----------------------------------------------------- 92 (325)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCCcc-----------------------------------------------------
Confidence 721112223333445666777766643
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhh
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWR 341 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~ 341 (541)
+.++.+..+|+|++|+++|+++++. +++++|+|||..|-+.....
T Consensus 93 --------------------------~~~~~~~~LSgGq~qRvalaraL~~------~p~lllLDEP~s~LD~~~~~--- 137 (325)
T TIGR01187 93 --------------------------FADRKPHQLSGGQQQRVALARALVF------KPKILLLDEPLSALDKKLRD--- 137 (325)
T ss_pred --------------------------hhcCChhhCCHHHHHHHHHHHHHHh------CCCEEEEeCCCccCCHHHHH---
Confidence 1223455689999999999999998 99999999998876654443
Q ss_pred hhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 342 ACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 342 ~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.++|.+..+. +.++++.+|+.+.. ..+..++.++.
T Consensus 138 --------~l~~~l~~l~~~~g~tiiivTHd~~e~-~~~~d~i~vl~ 175 (325)
T TIGR01187 138 --------QMQLELKTIQEQLGITFVFVTHDQEEA-MTMSDRIAIMR 175 (325)
T ss_pred --------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 667777766554 78999999987633 34666766664
No 307
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.6e-19 Score=186.57 Aligned_cols=192 Identities=21% Similarity=0.230 Sum_probs=140.1
Q ss_pred ceeeecccccccccc--eeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHRKS--VKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~--iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.++++||+++|.+.. +|+|+||++ ||+|+||||||||+.+|. -.+.+|+|. ++|. .+...+..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~---~~g~----~~~~l~~~ 408 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT---LNGV----EIASLDEQ 408 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee---ECCc----ChhhCChh
Confidence 579999999998765 999999999 999999999999999994 467889999 8887 33333333
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+..++++.|...+|. + |+++|+.++.-. ...+.+.++++.+||.++..+.. .|+..+
T Consensus 409 ~~~e~i~vl~Qr~hlF~---~----Tlr~NL~lA~~~------AsDEel~~aL~qvgL~~l~~~~p----~gl~t~---- 467 (573)
T COG4987 409 ALRETISVLTQRVHLFS---G----TLRDNLRLANPD------ASDEELWAALQQVGLEKLLESAP----DGLNTW---- 467 (573)
T ss_pred hHHHHHhhhccchHHHH---H----HHHHHHhhcCCC------CCHHHHHHHHHHcCHHHHHHhCh----hhhhch----
Confidence 35567899999998883 3 799999998321 22345667788888876321110 011110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+| ..-..+|||++||+.|++
T Consensus 468 ---------------------------------------lg---------------------e~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 468 ---------------------------------------LG---------------------EGGRRLSGGERRRLALAR 487 (573)
T ss_pred ---------------------------------------hc---------------------cCCCcCCchHHHHHHHHH
Confidence 01 112358999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
.+.. +..++|+|||+-|.+.-.+. ++.+.+.+..+ ++|+++.+|.+.-.+
T Consensus 488 ~LL~------dapl~lLDEPTegLD~~TE~-----------~vL~ll~~~~~-~kTll~vTHrL~~le 537 (573)
T COG4987 488 ALLH------DAPLWLLDEPTEGLDPITER-----------QVLALLFEHAE-GKTLLMVTHRLRGLE 537 (573)
T ss_pred HHHc------CCCeEEecCCcccCChhhHH-----------HHHHHHHHHhc-CCeEEEEecccccHh
Confidence 9998 99999999998886655443 56665554433 889999998865443
No 308
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.75 E-value=4.7e-19 Score=200.58 Aligned_cols=202 Identities=21% Similarity=0.233 Sum_probs=142.4
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|++ +.+|+++||+| ||+||||||||||+++|++ .+.+|+|+ ++|. .+.....
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~---idg~----~i~~~~~ 526 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL---VDGV----DLAIADP 526 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCE----ehhhCCH
Confidence 46999999999963 56999999999 9999999999999999954 57889999 8887 3333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|+..+++ - |++||+.++. + .. ..+.+.++++.+|+... +..+ +
T Consensus 527 ~~~r~~i~~v~q~~~lf~-~------ti~eNi~~~~-~-~~----~~~~i~~a~~~~~l~~~--------i~~l--p--- 580 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFS-R------SIRDNIALCN-P-GA----PFEHVIHAAKLAGAHDF--------ISEL--P--- 580 (694)
T ss_pred HHHHHhCeEEccCCeehh-h------hHHHHHhcCC-C-CC----CHHHHHHHHHHcChHHH--------HHhC--c---
Confidence 345668999999988884 3 8999999862 1 11 12344455666665431 1000 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|+ ++. . ......+|+||+|++.|+
T Consensus 581 -------------------------------~gl------------------~t~-----i-~~~g~~LSgGq~qri~lA 605 (694)
T TIGR01846 581 -------------------------------QGY------------------NTE-----V-GEKGANLSGGQRQRIAIA 605 (694)
T ss_pred -------------------------------Ccc------------------CcE-----e-cCCCCCCCHHHHHHHHHH
Confidence 000 000 0 111345899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..++. ++.+.|.+. ..++|+++.+|..+... ...++.+++
T Consensus 606 Rall~------~~~ililDEpts~LD~~~~~-----------~i~~~l~~~-~~~~t~i~itH~~~~~~--~~d~ii~l~ 665 (694)
T TIGR01846 606 RALVG------NPRILIFDEATSALDYESEA-----------LIMRNMREI-CRGRTVIIIAHRLSTVR--ACDRIIVLE 665 (694)
T ss_pred HHHHh------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHH-hCCCEEEEEeCChHHHH--hCCEEEEEe
Confidence 99999 99999999998876655553 566666554 35789999999876543 356666654
No 309
>KOG0056|consensus
Probab=99.75 E-value=9.8e-19 Score=179.04 Aligned_cols=191 Identities=21% Similarity=0.279 Sum_probs=131.4
Q ss_pred CCCceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 76 DRDYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
..+.|+|+||++.|. ++++|+||||++ |++||||+||||++|+| .-...+|.|. ++|+++ ....
T Consensus 534 ~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~---iDgqdI----rnvt 606 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT---IDGQDI----RNVT 606 (790)
T ss_pred cCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE---EcCchH----HHHH
Confidence 446899999999996 578999999999 99999999999999999 5667889999 889843 2223
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....+..+|.|+||..||.. |+..|+.|++... +.++..+.+..+ ++ ...+.++ |+
T Consensus 607 ~~SLRs~IGVVPQDtvLFNd-------TI~yNIryak~~A--sneevyaAAkAA----~I--------HdrIl~f--Pe- 662 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFND-------TILYNIRYAKPSA--SNEEVYAAAKAA----QI--------HDRILQF--PE- 662 (790)
T ss_pred HHHHHHhcCcccCcceeecc-------eeeeheeecCCCC--ChHHHHHHHHHh----hH--------HHHHhcC--ch-
Confidence 33456789999999999865 6889999995432 233333322111 10 1111111 00
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
||.+ -||+.|+ .+|||++|||+|
T Consensus 663 -----------------gY~t-------------------~VGERGL---------------------kLSGGEKQRVAi 685 (790)
T KOG0056|consen 663 -----------------GYNT-------------------RVGERGL---------------------KLSGGEKQRVAI 685 (790)
T ss_pred -----------------hhhh-------------------hhhhccc---------------------ccCCcchhhHHH
Confidence 0000 1355552 479999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccc
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSM 372 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~ 372 (541)
+++... .|.++++||.+...+.+++. ++..-|... -.+||.++..|.+
T Consensus 686 ARtiLK------~P~iIlLDEATSALDT~tER-----------~IQaaL~rl-ca~RTtIVvAHRL 733 (790)
T KOG0056|consen 686 ARTILK------APSIILLDEATSALDTNTER-----------AIQAALARL-CANRTTIVVAHRL 733 (790)
T ss_pred HHHHhc------CCcEEEEcchhhhcCCccHH-----------HHHHHHHHH-hcCCceEEEeeee
Confidence 999988 99999999997777777664 222223322 2467777666554
No 310
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.75 E-value=4.6e-19 Score=173.86 Aligned_cols=185 Identities=13% Similarity=0.091 Sum_probs=127.2
Q ss_pred eeecceEEE------EEEcCCCCCHHHHHHHHhcC--C----CCCCeeecccCCccceecccccccccccccEEEEeCCC
Q psy91 94 VKKGFDFTL------MVVGESGLGKSTLVNSLFLS--D----LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST 161 (541)
Q Consensus 94 iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~----~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~ 161 (541)
+|+++||+| +|+|||||||||||++|+|. + .+|+|+ ++|..+ ... ..+++.++|++|+.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~---~~g~~~----~~~--~~~~~~i~~~~q~~ 71 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEIL---LDGRPL----LPL--SIRGRHIATIMQNP 71 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEE---ECCEec----hhh--hhhhheeEEEecCc
Confidence 478999998 99999999999999999553 4 689999 888732 111 12235799999997
Q ss_pred c--cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCC
Q psy91 162 V--LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIP 239 (541)
Q Consensus 162 ~--l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~ 239 (541)
. +.+.+ |+.+++.+.............+.+..+++.+|+.+.
T Consensus 72 ~~~~~~~~------t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------------------------ 115 (230)
T TIGR02770 72 RTAFNPLF------TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP------------------------------ 115 (230)
T ss_pred hhhcCccc------CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch------------------------------
Confidence 4 45667 888887654111111112233456666777666420
Q ss_pred CCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCee
Q psy91 240 YSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK 319 (541)
Q Consensus 240 ~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~ 319 (541)
.+ +.+..+..+|+|++|++.|+++++. +
T Consensus 116 ------------------------------------~~----------~~~~~~~~LS~G~~qrv~laral~~------~ 143 (230)
T TIGR02770 116 ------------------------------------EE----------VLKKYPFQLSGGMLQRVMIALALLL------E 143 (230)
T ss_pred ------------------------------------HH----------HHhCChhhcCHHHHHHHHHHHHHhc------C
Confidence 00 1122345689999999999999998 9
Q ss_pred eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 320 LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 320 ~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++|+|||..|-+..... .+.++|.+..+ .++++++.+|+.+.. ..+..++.++.
T Consensus 144 p~vllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~~tiii~sH~~~~~-~~~~d~i~~l~ 200 (230)
T TIGR02770 144 PPFLIADEPTTDLDVVNQA-----------RVLKLLRELRQLFGTGILLITHDLGVV-ARIADEVAVMD 200 (230)
T ss_pred CCEEEEcCCccccCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 9999999998886655443 56677776655 378899999987743 23556666663
No 311
>KOG0055|consensus
Probab=99.75 E-value=5.5e-19 Score=200.29 Aligned_cols=193 Identities=21% Similarity=0.286 Sum_probs=136.1
Q ss_pred CCCCceeeecccccccccc---eeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc
Q psy91 75 TDRDYIGFATLPEQVHRKS---VKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~---iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
...+.|+++||+|.|+.++ ||+|+|++| ||||||||||||.+.+| ...|+.|.|. ++|. ++.
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~---IDg~----dik 1055 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK---IDGV----DIK 1055 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE---ECCc----ccc
Confidence 4456799999999998765 999999999 99999999999999999 7889999999 8888 555
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+..|+++|.|.|++.||.. |++||+.|| ... .+..+ +.++++..+..+ -+.++
T Consensus 1056 ~lnl~~LR~~i~lVsQEP~LF~~-------TIrENI~YG-~~~-vs~~e----Ii~Aak~ANaH~--------FI~sL-- 1112 (1228)
T KOG0055|consen 1056 DLNLKWLRKQIGLVSQEPVLFNG-------TIRENIAYG-SEE-VSEEE----IIEAAKLANAHN--------FISSL-- 1112 (1228)
T ss_pred cCCHHHHHHhcceeccCchhhcc-------cHHHHHhcc-CCC-CCHHH----HHHHHHHhhhHH--------HHhcC--
Confidence 55667778899999999999953 899999999 222 33333 333333333222 11111
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
|. ||.+ .+|+.| .++||||+||
T Consensus 1113 P~------------------GyDT-------------------~vGerG---------------------~QLSGGQKQR 1134 (1228)
T KOG0055|consen 1113 PQ------------------GYDT-------------------RVGERG---------------------VQLSGGQKQR 1134 (1228)
T ss_pred cC------------------cccC-------------------ccCccc---------------------CcCCchHHHH
Confidence 10 0100 123333 3689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
++|+|+.+. +|+++++||.+.-.+...+. ..+---+....+||+++..|.+.
T Consensus 1135 IAIARAilR------nPkILLLDEATSALDseSEr------------vVQeALd~a~~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1135 IAIARAILR------NPKILLLDEATSALDSESER------------VVQEALDRAMEGRTTIVIAHRLS 1186 (1228)
T ss_pred HHHHHHHHc------CCCeeeeeccchhhhhhhHH------------HHHHHHHHhhcCCcEEEEecchh
Confidence 999999999 99999999996544433332 11111122356788888877644
No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.75 E-value=1.2e-18 Score=162.30 Aligned_cols=151 Identities=16% Similarity=0.129 Sum_probs=114.2
Q ss_pred eeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
|.++++++.|+ ++.+|+++||+| +|+||||||||||+++|++. +.+|+|. ++|.
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~~~-------------- 63 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG---MPEG-------------- 63 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECCC--------------
Confidence 46789999996 467999999999 99999999999999999554 5567776 5432
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
+.++|++|+..++ .. |+.||+.++
T Consensus 64 -~~i~~~~q~~~~~-~~------tv~~nl~~~------------------------------------------------ 87 (166)
T cd03223 64 -EDLLFLPQRPYLP-LG------TLREQLIYP------------------------------------------------ 87 (166)
T ss_pred -ceEEEECCCCccc-cc------cHHHHhhcc------------------------------------------------
Confidence 4689999987653 45 788776542
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.+..+|+|++|++.|++++
T Consensus 88 -------------------------------------------------------------~~~~LS~G~~~rv~laral 106 (166)
T cd03223 88 -------------------------------------------------------------WDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred -------------------------------------------------------------CCCCCCHHHHHHHHHHHHH
Confidence 0134789999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+. +++++|+|||..|.+..... .+.+.+.+. ++++++.+|+.++. ....++.++
T Consensus 107 ~~------~p~~lllDEPt~~LD~~~~~-----------~l~~~l~~~---~~tiiivsh~~~~~--~~~d~i~~l 160 (166)
T cd03223 107 LH------KPKFVFLDEATSALDEESED-----------RLYQLLKEL---GITVISVGHRPSLW--KFHDRVLDL 160 (166)
T ss_pred Hc------CCCEEEEECCccccCHHHHH-----------HHHHHHHHh---CCEEEEEeCChhHH--hhCCEEEEE
Confidence 98 99999999998887665543 344444433 47889999997653 355666554
No 313
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.74 E-value=2.1e-18 Score=188.40 Aligned_cols=196 Identities=12% Similarity=0.067 Sum_probs=136.4
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc-
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV- 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~- 147 (541)
.+.+.++|+++ .+|++|||+| ||+|||||||||||++|+| .+..|+|. ++|..+ .....
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~---~~g~~i----~~~~~~ 333 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIM---LNGKEI----NALSTA 333 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE---ECCEEC----CCCCHH
Confidence 34689999984 2699999999 9999999999999999955 46789999 888732 11111
Q ss_pred ccccccEEEEeCCC---ccccccccccCCCcccceeccc---cccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccc
Q psy91 148 RGRQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFAT---LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 221 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~---~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl 221 (541)
...+..++||+|+. .+++.+ |+.+|+.+.. ...........+.+..+++.+|+..
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~------t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------- 394 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDA------PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------------- 394 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCC------cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC-------------
Confidence 11234689999984 577878 8888875321 0000001111223444455444420
Q ss_pred cccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCC
Q psy91 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301 (541)
Q Consensus 222 ~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~ 301 (541)
. ..++.+..+|+|++
T Consensus 395 ----------------------------------------------------------------~-~~~~~~~~LSgG~k 409 (510)
T PRK15439 395 ----------------------------------------------------------------N-HAEQAARTLSGGNQ 409 (510)
T ss_pred ----------------------------------------------------------------C-CccCccccCCcHHH
Confidence 1 23445678999999
Q ss_pred cceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc
Q psy91 302 KTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL 381 (541)
Q Consensus 302 q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~ 381 (541)
|++.|+++++. +++|+|+|||+.|-+..+.. .+.+.|.+..+.+.++++.+|+++... .++.
T Consensus 410 qrl~la~al~~------~p~lLlLDEPt~gLD~~~~~-----------~l~~~l~~l~~~g~tiIivsHd~~~i~-~~~d 471 (510)
T PRK15439 410 QKVLIAKCLEA------SPQLLIVDEPTRGVDVSARN-----------DIYQLIRSIAAQNVAVLFISSDLEEIE-QMAD 471 (510)
T ss_pred HHHHHHHHHhh------CCCEEEECCCCcCcChhHHH-----------HHHHHHHHHHhCCCEEEEECCCHHHHH-HhCC
Confidence 99999999998 99999999998887766554 666777766556789999999988654 3556
Q ss_pred eeEEE
Q psy91 382 RLTVV 386 (541)
Q Consensus 382 rvnvI 386 (541)
++.++
T Consensus 472 ~i~~l 476 (510)
T PRK15439 472 RVLVM 476 (510)
T ss_pred EEEEE
Confidence 66665
No 314
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.4e-18 Score=187.34 Aligned_cols=199 Identities=12% Similarity=0.133 Sum_probs=135.9
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|.++|+++.+ +.+|+++||+| ||+|||||||||||++|+| .+.+|+|. ++|..+.. ......
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~i~~---~~~~~~ 320 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT---LHGKKINN---HNANEA 320 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEE---ECCEECCC---CCHHHH
Confidence 468999999984 46999999999 9999999999999999955 46789999 88863211 111112
Q ss_pred ccccEEEEeCCC---ccccccccccCCCcccceeccccc-----cc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 150 RQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLP-----EQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 150 ~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~-----~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.++.++|++|+. .+++.+ ++.+|+.+..+. .+ .......+.+..+++.+|+
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------------- 380 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYL------DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRV-------------- 380 (491)
T ss_pred HHCCCEEcCCchhhCCcccCC------cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCc--------------
Confidence 244689999984 467766 776654332100 00 0011111122222222222
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
.....++.+..+|+|+
T Consensus 381 ----------------------------------------------------------------~~~~~~~~~~~LSgGq 396 (491)
T PRK10982 381 ----------------------------------------------------------------KTPGHRTQIGSLSGGN 396 (491)
T ss_pred ----------------------------------------------------------------cCCCcccccccCCcHH
Confidence 1112355677899999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +++++|+|||+.|-+..... ++.+++.+..+.+.++++.+|+++... +++
T Consensus 397 ~qrv~la~al~~------~p~illLDEPt~gLD~~~~~-----------~~~~~l~~l~~~~~tvi~vsHd~~~~~-~~~ 458 (491)
T PRK10982 397 QQKVIIGRWLLT------QPEILMLDEPTRGIDVGAKF-----------EIYQLIAELAKKDKGIIIISSEMPELL-GIT 458 (491)
T ss_pred HHHHHHHHHHhc------CCCEEEEcCCCcccChhHHH-----------HHHHHHHHHHHCCCEEEEECCChHHHH-hhC
Confidence 999999999998 99999999998887766554 666677666666889999999988654 466
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.++.++
T Consensus 459 d~v~~l 464 (491)
T PRK10982 459 DRILVM 464 (491)
T ss_pred CEEEEE
Confidence 666665
No 315
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.74 E-value=2.7e-18 Score=189.36 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=132.7
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
.+.++||+++|+ ++.+|+++||+| +|+|||||||||||++|+|. +..|+|. +++.
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~---~~~~------------- 67 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR---PAPG------------- 67 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ecCC-------------
Confidence 588999999998 778999999999 99999999999999999664 5567776 4321
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccc-cch----h---------hHh------HhhhHHHHHHHhCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQV----H---------RKS------VKKGFDFTLMVVGESGL 209 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~----~---------~~e------~~~~v~~~L~~vGL~g~ 209 (541)
..+|||+|++.+++.+ ||.||+.++... ... . ..+ ....+.+.++.+|..+.
T Consensus 68 --~~i~~v~Q~~~~~~~~------tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (552)
T TIGR03719 68 --IKVGYLPQEPQLDPTK------TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDL 139 (552)
T ss_pred --CEEEEEeccCCCCCCC------cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchh
Confidence 3589999999999889 999999875210 000 0 000 01122223333332210
Q ss_pred cchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCC
Q psy91 210 GKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 289 (541)
Q Consensus 210 ~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~ 289 (541)
. +.+. .++..+.... .
T Consensus 140 ~-~~~~-------------------------------------------------------------~~l~~~~l~~--~ 155 (552)
T TIGR03719 140 D-RKLE-------------------------------------------------------------IAMDALRCPP--W 155 (552)
T ss_pred H-HHHH-------------------------------------------------------------HHHhhCCCCc--c
Confidence 0 0000 1222222211 2
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
+..+..+|+|++|++.|+++++. +++++|+|||..+.+..+.. .+.++|.+. +.++++.+
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~------~p~lLLLDEPt~~LD~~~~~-----------~l~~~L~~~---~~tvIiis 215 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLS------KPDMLLLDEPTNHLDAESVA-----------WLEQHLQEY---PGTVVAVT 215 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhc------CCCEEEEcCCCCCCChHHHH-----------HHHHHHHhC---CCeEEEEe
Confidence 45677899999999999999998 99999999997776655543 344445443 24888999
Q ss_pred ccchhhhhcccceeEEEc
Q psy91 370 KSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvIp 387 (541)
|+.+... .++.++.++.
T Consensus 216 Hd~~~~~-~~~d~v~~l~ 232 (552)
T TIGR03719 216 HDRYFLD-NVAGWILELD 232 (552)
T ss_pred CCHHHHH-hhcCeEEEEE
Confidence 9887554 3445555553
No 316
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=1.6e-18 Score=184.76 Aligned_cols=186 Identities=16% Similarity=0.107 Sum_probs=129.6
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
+.+.++||++.|++ +.+|+++||+| ||+|||||||||||++|+| .+..|+|. ++|...
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~---I~G~~~-------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD---IKGSAA-------- 88 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEE---ECCEee--------
Confidence 35789999999987 46999999999 9999999999999999965 46789988 777610
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
++.+...+.+.+ |+++|+.+.....+....+..+.+..+++.+|+..
T Consensus 89 ---------~i~~~~~l~~~l------TV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~------------------ 135 (549)
T PRK13545 89 ---------LIAISSGLNGQL------TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGK------------------ 135 (549)
T ss_pred ---------eEEeccccCCCC------cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 111223455667 99999877422112222333344555555555432
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++.+..+|+|++|++.|
T Consensus 136 -------------------------------------------------------------~ld~~~~~LSGGQrQRVaL 154 (549)
T PRK13545 136 -------------------------------------------------------------FIYQPVKTYSSGMKSRLGF 154 (549)
T ss_pred -------------------------------------------------------------HhhCCcccCCHHHHHHHHH
Confidence 1122345689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +|+++|+|||..|.+..... .+.++|.+..+.++++++.+|+++... .++.++.++
T Consensus 155 ArAL~~------~P~LLLLDEPTsgLD~~sr~-----------~LlelL~el~~~G~TIIIVSHdl~~i~-~l~DrIivL 216 (549)
T PRK13545 155 AISVHI------NPDILVIDEALSVGDQTFTK-----------KCLDKMNEFKEQGKTIFFISHSLSQVK-SFCTKALWL 216 (549)
T ss_pred HHHHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEECCHHHHH-HhCCEEEEE
Confidence 999998 99999999998776654432 566666665555789999999987543 344555554
No 317
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=2.3e-18 Score=189.91 Aligned_cols=186 Identities=15% Similarity=0.113 Sum_probs=132.3
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+.++|+++.|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|+ +.+.
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~---~~~~------------ 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK---IGET------------ 384 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE---ECCc------------
Confidence 35799999999999889999999999 99999999999999999554 5678877 5222
Q ss_pred cccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+||++|+. .+++.+ |+.+++.++......... ...+..++..+|+.
T Consensus 385 ---~~i~~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~-------------------- 433 (552)
T TIGR03719 385 ---VKLAYVDQSRDALDPNK------TVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFK-------------------- 433 (552)
T ss_pred ---eEEEEEeCCccccCCCC------cHHHHHHhhccccccCcc--hHHHHHHHHhCCCC--------------------
Confidence 1489999986 478888 999998876211111100 01112233333321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
....++.+..+|+|++|++.|+
T Consensus 434 ----------------------------------------------------------~~~~~~~~~~LSgGe~qrv~la 455 (552)
T TIGR03719 434 ----------------------------------------------------------GSDQQKKVGQLSGGERNRVHLA 455 (552)
T ss_pred ----------------------------------------------------------hhHhcCchhhCCHHHHHHHHHH
Confidence 1122445677999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.|.+..+.. .+.++|.+.. .++++.+|+.+... .++.++.++.
T Consensus 456 ~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~---~~viivsHd~~~~~-~~~d~i~~l~ 514 (552)
T TIGR03719 456 KTLKS------GGNVLLLDEPTNDLDVETLR-----------ALEEALLEFA---GCAVVISHDRWFLD-RIATHILAFE 514 (552)
T ss_pred HHHhh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHCC---CeEEEEeCCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998887665543 4555555442 37889999987554 3566766664
No 318
>PLN03130 ABC transporter C family member; Provisional
Probab=99.73 E-value=2.2e-18 Score=208.73 Aligned_cols=201 Identities=17% Similarity=0.208 Sum_probs=142.8
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+|+||+++|++ .++|+||||+| ||+||||||||||+++| +..+.+|+|. ++|. ++.....
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~---IDG~----dI~~i~l 1308 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL---IDGC----DISKFGL 1308 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEE---ECCE----ecccCCH
Confidence 57999999999964 36999999999 99999999999999999 4568889999 8887 3333344
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++++++|+|++.||. | |+++|+.++. .. ..+.+.++++.+++.+.-.+ .=.|++.
T Consensus 1309 ~~LR~~IsiVpQdp~LF~---G----TIreNLd~~~---~~----tdeei~~Al~~a~l~~~I~~----lp~GLdt---- 1366 (1622)
T PLN03130 1309 MDLRKVLGIIPQAPVLFS---G----TVRFNLDPFN---EH----NDADLWESLERAHLKDVIRR----NSLGLDA---- 1366 (1622)
T ss_pred HHHHhccEEECCCCcccc---c----cHHHHhCcCC---CC----CHHHHHHHHHHcCcHHHHHh----CccccCc----
Confidence 456678999999999983 3 8999998762 11 23346667777776432110 0001100
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+. -..+|+||+|+++|+
T Consensus 1367 ---------------------------------------~Vge~---------------------G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130 1367 ---------------------------------------EVSEA---------------------GENFSVGQRQLLSLA 1386 (1622)
T ss_pred ---------------------------------------cccCC---------------------CCCCCHHHHHHHHHH
Confidence 01222 235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+++. +++++|+|||+..-+..++. .+.+.++++. .++|+++..|.+..... ..++.+++
T Consensus 1387 RALLr------~p~ILILDEATSaLD~~Te~-----------~Iq~~I~~~~-~~~TvI~IAHRL~tI~~--~DrIlVLd 1446 (1622)
T PLN03130 1387 RALLR------RSKILVLDEATAAVDVRTDA-----------LIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILVLD 1446 (1622)
T ss_pred HHHHc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHC-CCCEEEEEeCChHHHHh--CCEEEEEE
Confidence 99999 99999999997764443332 4445555443 37899999988765432 46666665
No 319
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.73 E-value=7e-19 Score=165.99 Aligned_cols=162 Identities=17% Similarity=0.256 Sum_probs=111.4
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
+++|+++.|+++.+|+++||++ +|+||||||||||+++|++ .+..|+|. ++|..+ .......++.
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~---~~g~~~----~~~~~~~~~~ 73 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL---LDGKDL----ASLSPKELAR 73 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CcCCHHHHHH
Confidence 3678999998888999999999 9999999999999999955 56789998 777622 1111111111
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
. ++++|| +++.+|+.+
T Consensus 74 ~--------------i~~~~q--------------------------~l~~~gl~~------------------------ 89 (180)
T cd03214 74 K--------------IAYVPQ--------------------------ALELLGLAH------------------------ 89 (180)
T ss_pred H--------------HhHHHH--------------------------HHHHcCCHh------------------------
Confidence 2 333333 222223221
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
..+..+..+|+|++|++.|+++++.
T Consensus 90 -------------------------------------------------------~~~~~~~~LS~G~~qrl~laral~~ 114 (180)
T cd03214 90 -------------------------------------------------------LADRPFNELSGGERQRVLLARALAQ 114 (180)
T ss_pred -------------------------------------------------------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 0112345689999999999999999
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++|+|||..|-+..... .+.+++.+..+. +.++++.+|+.+... .+..++.++
T Consensus 115 ------~p~llllDEP~~~LD~~~~~-----------~~~~~l~~~~~~~~~tiii~sh~~~~~~-~~~d~~~~l 171 (180)
T cd03214 115 ------EPPILLLDEPTSHLDIAHQI-----------ELLELLRRLARERGKTVVMVLHDLNLAA-RYADRVILL 171 (180)
T ss_pred ------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 99999999998876655543 566666665444 678899999877543 244555554
No 320
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.73 E-value=1.6e-18 Score=208.00 Aligned_cols=241 Identities=16% Similarity=0.187 Sum_probs=140.1
Q ss_pred ceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccC-Cccceecccccc
Q psy91 79 YIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVN-GSNTVIEVAGTK 146 (541)
Q Consensus 79 ~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~-G~~~~~~~~~~~ 146 (541)
.|+++||++.|+. .++|+|+||+| ||+||||||||||+++| +..|.+|+|+ ++ |. .+....
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~---i~~g~----~i~~~~ 454 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII---INDSH----NLKDIN 454 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE---EeCCc----chhhCC
Confidence 6999999999975 36999999999 99999999999999999 5568899999 74 45 222222
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccc-h------------hhHhHh---hhHHH-HHHHhCCCCc
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQ-V------------HRKSVK---KGFDF-TLMVVGESGL 209 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~-~------------~~~e~~---~~v~~-~L~~vGL~g~ 209 (541)
...+++.+|||+|++.+|+ . |++||+.++..... . ...+.. ....+ .....+.. .
T Consensus 455 ~~~lr~~Ig~V~Q~~~LF~-~------TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 526 (1466)
T PTZ00265 455 LKWWRSKIGVVSQDPLLFS-N------SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDM-S 526 (1466)
T ss_pred HHHHHHhccEecccccchh-c------cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhc-c
Confidence 3345567999999998885 6 99999998732100 0 000000 00000 00000000 0
Q ss_pred cchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhccc-ccC
Q psy91 210 GKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS-DLY 288 (541)
Q Consensus 210 ~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~-~~~ 288 (541)
-+......+...... .. .........++. +|-..|++.|-.. +-.
T Consensus 527 ~~~~~~~~l~~~~~~--~~-------------------~~~~~v~~a~~~-------------~~l~~~i~~lp~g~dT~ 572 (1466)
T PTZ00265 527 NTTDSNELIEMRKNY--QT-------------------IKDSEVVDVSKK-------------VLIHDFVSALPDKYETL 572 (1466)
T ss_pred cccchhhhhhccccc--cc-------------------CCHHHHHHHHHH-------------hCcHHHHHhCccccCce
Confidence 000000000000000 00 000000000000 0112344433211 001
Q ss_pred CCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceee
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTI 367 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i 367 (541)
-......+|+||+|+++|+++++. +|+++|+|||+.+.+..+.. .+.+.|.+..+ .++|+++
T Consensus 573 vg~~g~~LSGGQkQRiaIARAll~------~P~ILlLDEpTSaLD~~se~-----------~i~~~L~~~~~~~g~TvIi 635 (1466)
T PTZ00265 573 VGSNASKLSGGQKQRISIARAIIR------NPKILILDEATSSLDNKSEY-----------LVQKTINNLKGNENRITII 635 (1466)
T ss_pred eCCCCCcCCHHHHHHHHHHHHHhc------CCCEEEEeCcccccCHHHHH-----------HHHHHHHHHhhcCCCEEEE
Confidence 123456799999999999999999 99999999997776554443 56666666544 4789999
Q ss_pred ccccchhhhhcccceeEEEc
Q psy91 368 EKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 368 ~~~~~di~~~~l~~rvnvIp 387 (541)
.+|++... +...++.++.
T Consensus 636 IsHrls~i--~~aD~Iivl~ 653 (1466)
T PTZ00265 636 IAHRLSTI--RYANTIFVLS 653 (1466)
T ss_pred EeCCHHHH--HhCCEEEEEe
Confidence 99987654 3566666664
No 321
>PLN03232 ABC transporter C family member; Provisional
Probab=99.73 E-value=2.4e-18 Score=208.01 Aligned_cols=201 Identities=17% Similarity=0.163 Sum_probs=141.3
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+|+||+++|++ +++|+|+||+| ||+||||||||||+++| +..+.+|+|. ++|. ++.....
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~---IdG~----di~~i~~ 1305 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM---IDDC----DVAKFGL 1305 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEE---ECCE----EhhhCCH
Confidence 46999999999954 46999999999 99999999999999999 4568889999 8887 3333334
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+++|+|++.+|+ - |+++|+.++. .. ..+.+.++++.+|+.+.-.+ .-.|++.
T Consensus 1306 ~~lR~~i~iVpQdp~LF~-g------TIr~NL~~~~---~~----sdeei~~al~~a~l~~~I~~----lp~GLdt---- 1363 (1495)
T PLN03232 1306 TDLRRVLSIIPQSPVLFS-G------TVRFNIDPFS---EH----NDADLWEALERAHIKDVIDR----NPFGLDA---- 1363 (1495)
T ss_pred HHHHhhcEEECCCCeeeC-c------cHHHHcCCCC---CC----CHHHHHHHHHHcCCHHHHHh----CcCCCCc----
Confidence 456678999999999984 3 8999998762 11 22345666777776432110 0001100
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+. -..+|+||+|+++|+
T Consensus 1364 ---------------------------------------~v~e~---------------------G~~LSgGQrQrlaLA 1383 (1495)
T PLN03232 1364 ---------------------------------------EVSEG---------------------GENFSVGQRQLLSLA 1383 (1495)
T ss_pred ---------------------------------------eecCC---------------------CCCCCHHHHHHHHHH
Confidence 11222 235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+++. +++++|+|||+..-+..++. .+.+.+.++. .++|+++..|.++... -..++.+++
T Consensus 1384 RALLr------~~~ILILDEATSaLD~~Te~-----------~Iq~~L~~~~-~~~TvI~IAHRl~ti~--~~DrIlVL~ 1443 (1495)
T PLN03232 1384 RALLR------RSKILVLDEATASVDVRTDS-----------LIQRTIREEF-KSCTMLVIAHRLNTII--DCDKILVLS 1443 (1495)
T ss_pred HHHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEeCCHHHHH--hCCEEEEEE
Confidence 99999 99999999997764433332 4444454442 3688998898875433 255666664
No 322
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.73 E-value=5e-18 Score=169.67 Aligned_cols=173 Identities=17% Similarity=0.085 Sum_probs=115.3
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCc
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTV 162 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~ 162 (541)
.+.+|+++||+| ||+|||||||||||++|+| .+..|+|. ++|. ++++.|...
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~---~~g~-----------------~~~~~~~~~ 95 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD---RNGE-----------------VSVIAISAG 95 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE---ECCE-----------------EeEEecccC
Confidence 356999999999 9999999999999999966 46678887 6664 234556555
Q ss_pred cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCC
Q psy91 163 LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSD 242 (541)
Q Consensus 163 l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~ 242 (541)
+.+.+ |+.+|+.++....+....+....+..++..+++..
T Consensus 96 ~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------------------- 135 (264)
T PRK13546 96 LSGQL------TGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGE---------------------------------- 135 (264)
T ss_pred CCCCC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch----------------------------------
Confidence 66667 88888876421111112222222233333333211
Q ss_pred eeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeE
Q psy91 243 IGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322 (541)
Q Consensus 243 vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L 322 (541)
..+..+..+|+|++|++.|+++++. ++++
T Consensus 136 ---------------------------------------------~~~~~~~~LS~Gq~qrv~Laral~~------~p~i 164 (264)
T PRK13546 136 ---------------------------------------------FIYQPVKKYSSGMRAKLGFSINITV------NPDI 164 (264)
T ss_pred ---------------------------------------------hhcCCcccCCHHHHHHHHHHHHHhh------CCCE
Confidence 1122345689999999999999998 9999
Q ss_pred EEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 323 TVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 323 ~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+|+|||..|.+..... .+.+.|.+..+.++++++.+|+.+... .++.++.++
T Consensus 165 LlLDEPt~gLD~~~~~-----------~l~~~L~~~~~~g~tiIiisH~~~~i~-~~~d~i~~l 216 (264)
T PRK13546 165 LVIDEALSVGDQTFAQ-----------KCLDKIYEFKEQNKTIFFVSHNLGQVR-QFCTKIAWI 216 (264)
T ss_pred EEEeCccccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHHH-HHcCEEEEE
Confidence 9999998776544332 566666665556889999999877543 234455444
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.7e-18 Score=188.55 Aligned_cols=182 Identities=18% Similarity=0.164 Sum_probs=129.1
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..+.++||+++|+++.+|+++||+| +|+|||||||||||++|+|. +.+|+|. +.|.
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~---~~~~------------- 381 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK---WSEN------------- 381 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCc-------------
Confidence 4799999999999888999999999 99999999999999999664 5677777 5543
Q ss_pred ccccEEEEeCCCc--cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 150 RQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 150 ~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+|||+|+.. +++.+ |+.+++.+... . ....+.+..+++.+|+..
T Consensus 382 --~~i~~~~q~~~~~~~~~~------t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~------------------- 429 (530)
T PRK15064 382 --ANIGYYAQDHAYDFENDL------TLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQ------------------- 429 (530)
T ss_pred --eEEEEEcccccccCCCCC------cHHHHHHHhcc----C-CccHHHHHHHHHHcCCCh-------------------
Confidence 35899999864 45567 88887643210 0 011223344444444321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+ ..++.+..+|+|++|++.|+
T Consensus 430 ----------------------------------------------------------~-~~~~~~~~LSgGq~qrv~la 450 (530)
T PRK15064 430 ----------------------------------------------------------D-DIKKSVKVLSGGEKGRMLFG 450 (530)
T ss_pred ----------------------------------------------------------h-HhcCcccccCHHHHHHHHHH
Confidence 0 22345678999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||..|.+..+.. .+.++|.+. +.++++.+|+.+... .++.++.++.
T Consensus 451 ~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~---~~tvi~vsHd~~~~~-~~~d~i~~l~ 509 (530)
T PRK15064 451 KLMMQ------KPNVLVMDEPTNHMDMESIE-----------SLNMALEKY---EGTLIFVSHDREFVS-SLATRIIEIT 509 (530)
T ss_pred HHHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHC---CCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998876655443 344444443 348899999987543 3456666653
No 324
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.72 E-value=3.3e-18 Score=204.98 Aligned_cols=192 Identities=18% Similarity=0.185 Sum_probs=138.5
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC------CCCCCeeecccCCccceecccccccccccccEEEEe
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS------DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~------~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
.+.+|+|||+.+ +|+|||||||||||++|++. +.+|+|. ++|..+ .... ...++.++||+
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~---~~G~~~----~~~~-~~~r~~i~yv~ 144 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVIT---YDGITP----EEIK-KHYRGDVVYNA 144 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEE---ECCEeh----HHHH-hhcCceeEEec
Confidence 467999999999 99999999999999999764 3689999 888722 1111 12345699999
Q ss_pred CCCccccccccccCCCcccceeccc---ccc----chhhHhHhhh-HHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 159 GSTVLTPSLIGSLFQTDRDYIGFAT---LPE----QVHRKSVKKG-FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 159 Q~~~l~~~lig~~~qtv~e~l~~~~---~~~----~~~~~e~~~~-v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
|++.+++.+ ||+|++.|+. .+. ...+.+..++ ++.+++.+|+.++.++.++
T Consensus 145 Q~d~~~~~l------TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg--------------- 203 (1394)
T TIGR00956 145 ETDVHFPHL------TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG--------------- 203 (1394)
T ss_pred cccccCCCC------CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeC---------------
Confidence 999999999 9999999862 121 1222332333 4567888888764333221
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+..+..+|+|++||++|++++
T Consensus 204 -----------------------------------------------------------~~~~~~LSGGerkRvsIA~aL 224 (1394)
T TIGR00956 204 -----------------------------------------------------------NDFVRGVSGGERKRVSIAEAS 224 (1394)
T ss_pred -----------------------------------------------------------CCcCCCCCcccchHHHHHHHH
Confidence 123456899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++++|||+.|.+..... .+.+.|++..+. ++++++.+|+..-+...+..++.++.
T Consensus 225 ~~------~p~vlllDEPTsgLD~~~~~-----------~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~ 285 (1394)
T TIGR00956 225 LG------GAKIQCWDNATRGLDSATAL-----------EFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY 285 (1394)
T ss_pred Hh------CCCEEEEeCCCCCcCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Confidence 98 99999999998887665553 677777777654 78889988875433334556666653
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.72 E-value=4.8e-18 Score=187.47 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=131.4
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+.++||++.|+++.+|++|||+| +|+|||||||||||++|+| .+.+|+|. +.+.
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~---~~~~------------ 386 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK---IGET------------ 386 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCc------------
Confidence 34699999999999889999999999 9999999999999999965 46678777 5222
Q ss_pred cccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+|||+|+. .+++.+ ||.+|+.++......... ...+..+++.+|+.
T Consensus 387 ---~~i~~v~q~~~~~~~~~------tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~-------------------- 435 (556)
T PRK11819 387 ---VKLAYVDQSRDALDPNK------TVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFK-------------------- 435 (556)
T ss_pred ---eEEEEEeCchhhcCCCC------CHHHHHHhhccccccccc--HHHHHHHHHhCCCC--------------------
Confidence 1489999986 678888 999998875211110000 01111223333321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
....++.+..+|+|++|++.|+
T Consensus 436 ----------------------------------------------------------~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 436 ----------------------------------------------------------GGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred ----------------------------------------------------------hhHhcCchhhCCHHHHHHHHHH
Confidence 1122445678999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||..|.+..+.. .+.++|.+.. .++++.+|+.+... .++.++.++.
T Consensus 458 ~al~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~---~tvi~vtHd~~~~~-~~~d~i~~l~ 516 (556)
T PRK11819 458 KTLKQ------GGNVLLLDEPTNDLDVETLR-----------ALEEALLEFP---GCAVVISHDRWFLD-RIATHILAFE 516 (556)
T ss_pred HHHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHhCC---CeEEEEECCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998887665543 4555555442 37888999877443 3556666663
No 326
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.6e-18 Score=158.89 Aligned_cols=200 Identities=18% Similarity=0.216 Sum_probs=137.7
Q ss_pred ceeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhcCC----CCCCeeecccCCccceeccccccc
Q psy91 79 YIGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD----LYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 79 ~i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~----~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.++||++...++ .||++||++| |||||||||||||.++|+|.+ +.|+|. ++|+++. ..+.
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~---~~GedI~----~l~~ 75 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEIL---FDGEDIL----ELSP 75 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEE---ECCcccc----cCCH
Confidence 46889999999885 9999999999 999999999999999998766 589999 9999543 2222
Q ss_pred cc-ccccEEEEeCCCccccccccccCCCcccceeccccc-cchh--hHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 RG-RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQVH--RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 ~~-~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~~~--~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.. .+..+..-||.+.-+|.. ++.+.+..+.-. .+.. ..+....+.+.++.+++..
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV------~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~--------------- 134 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGV------TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE--------------- 134 (251)
T ss_pred hHHHhcCCEEeecCCccCCCe------eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH---------------
Confidence 22 344677889999888877 777655544100 0000 1233444555566655542
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC-CCCCCCCCc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV-PNVNDRQGK 302 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~-~~ls~g~~q 302 (541)
.|+ ++.+ ...|||+++
T Consensus 135 -----------------------------------------------------~~l----------~R~vN~GFSGGEkK 151 (251)
T COG0396 135 -----------------------------------------------------EFL----------ERYVNEGFSGGEKK 151 (251)
T ss_pred -----------------------------------------------------HHh----------hcccCCCcCcchHH
Confidence 011 1111 236889999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
|.+|...++. +|++.|+|||-.|-+++... .+.+-++.....++.+++.+|.-+|..--...+
T Consensus 152 R~EilQ~~~l------ePkl~ILDE~DSGLDIdalk-----------~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 152 RNEILQLLLL------EPKLAILDEPDSGLDIDALK-----------IVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHhc------CCCEEEecCCCcCccHHHHH-----------HHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 9998888877 99999999999999988765 222333333445888999999888766322345
Q ss_pred eEEE
Q psy91 383 LTVV 386 (541)
Q Consensus 383 vnvI 386 (541)
|+|+
T Consensus 215 vhvl 218 (251)
T COG0396 215 VHVL 218 (251)
T ss_pred EEEE
Confidence 5554
No 327
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.72 E-value=4.4e-18 Score=157.96 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=47.1
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
+.++|+++.|+++++|+++||++ +|+|||||||||||++|+| .+..|+|. ++|.
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~---~~g~ 62 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL---VDGK 62 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCE
Confidence 46889999999889999999999 9999999999999999955 45678887 6665
No 328
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.71 E-value=1.1e-17 Score=168.46 Aligned_cols=205 Identities=20% Similarity=0.194 Sum_probs=154.9
Q ss_pred CCCceeeecccccccc-----------cceeecceEEE------EEEcCCCCCHHHHHHHHh-cCCCCCCeeecccCCcc
Q psy91 76 DRDYIGFATLPEQVHR-----------KSVKKGFDFTL------MVVGESGLGKSTLVNSLF-LSDLYGDRKVPNVNGSN 137 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-----------~~iL~~isl~i------aIiGpSGsGKSTLL~~L~-~~~~~G~i~~~~~~G~~ 137 (541)
.++.++.+++.+.|.- ..++++|||++ +|||.||||||||=.+|+ ..+..|+|+ +.|+.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~---F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIR---FDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEE---ECCcc
Confidence 4457788888777742 24899999998 999999999999999993 335569999 99984
Q ss_pred ceecccccccccccccEEEEeCCC--ccccccccccCCCcccceecccccc--chhhHhHhhhHHHHHHHhCCCCccchh
Q psy91 138 TVIEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLGKST 213 (541)
Q Consensus 138 ~~~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~--~~~~~e~~~~v~~~L~~vGL~g~~ks~ 213 (541)
+. ..+....+..++.+-.||||+ .|.|.+ ||.+-+.-+..-. ..++.+..+++.++|..+||+..
T Consensus 350 i~-~~~~~~mrplR~~mQvVFQDPygSLsPRm------tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~---- 418 (534)
T COG4172 350 ID-GLSRKEMRPLRRRMQVVFQDPYGSLSPRM------TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPA---- 418 (534)
T ss_pred cc-ccChhhhhhhhhhceEEEeCCCCCCCccc------CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChh----
Confidence 42 223333445667889999996 688888 9988887773222 45778888999999999999640
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
..++++
T Consensus 419 --------------------------------------------------------------------------~r~RYP 424 (534)
T COG4172 419 --------------------------------------------------------------------------TRNRYP 424 (534)
T ss_pred --------------------------------------------------------------------------HhhcCC
Confidence 224567
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccc
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSM 372 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~ 372 (541)
...||||+|+++|+++++. +|+++++|||+...+. -+..|+.+.|.+.++ .+-+.++.+|++
T Consensus 425 hEFSGGQRQRIAIARAliL------kP~~i~LDEPTSALD~-----------SVQaQvv~LLr~LQ~k~~LsYLFISHDL 487 (534)
T COG4172 425 HEFSGGQRQRIAIARALIL------KPELILLDEPTSALDR-----------SVQAQVLDLLRDLQQKHGLSYLFISHDL 487 (534)
T ss_pred cccCcchhhHHHHHHHHhc------CCcEEEecCCchHhhH-----------HHHHHHHHHHHHHHHHhCCeEEEEeccH
Confidence 8899999999999999999 9999999999765332 234488888888865 467888889887
Q ss_pred hhhhhcccceeEEE
Q psy91 373 DIEERGVKLRLTVV 386 (541)
Q Consensus 373 di~~~~l~~rvnvI 386 (541)
.+. +.++.+|.|.
T Consensus 488 ~Vv-rAl~~~viVm 500 (534)
T COG4172 488 AVV-RALCHRVIVM 500 (534)
T ss_pred HHH-HHhhceEEEE
Confidence 754 3466666554
No 329
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.71 E-value=9.1e-18 Score=169.08 Aligned_cols=207 Identities=18% Similarity=0.185 Sum_probs=152.5
Q ss_pred CCceeeeccccccc----ccceeecceEEE------EEEcCCCCCHHHHHHHHhc-------CCCCCCeeecccCCccce
Q psy91 77 RDYIGFATLPEQVH----RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-------SDLYGDRKVPNVNGSNTV 139 (541)
Q Consensus 77 ~~~i~~~~l~~~~~----~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-------~~~~G~i~~~~~~G~~~~ 139 (541)
.+.+.++||++.|+ ...++++|||+| ||||.||||||-..+.+++ ...+|+|. ++|+++.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~---f~G~dll 80 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSIL---FDGEDLL 80 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeE---EcChhhh
Confidence 45789999999996 567999999999 9999999999976666622 22357888 8888654
Q ss_pred ecccccccccccccEEEEeCCC--ccccccccccCCCcccceecc-ccccchhhHhHhhhHHHHHHHhCCCCccchhhhh
Q psy91 140 IEVAGTKVRGRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFA-TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 216 (541)
Q Consensus 140 ~~~~~~~~~~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~-~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~ 216 (541)
..........+-..|+++||++ .|.|-. |+...+.-. ++..++++...++++-++|+.+|+....+
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~------tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~----- 149 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLH------TIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK----- 149 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHh------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh-----
Confidence 3322222223445799999996 566766 666544433 44556778888889999999999864100
Q ss_pred hhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC
Q psy91 217 SLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 296 (541)
Q Consensus 217 ~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l 296 (541)
..+.++..+
T Consensus 150 -----------------------------------------------------------------------rl~~yPHeL 158 (534)
T COG4172 150 -----------------------------------------------------------------------RLDAYPHEL 158 (534)
T ss_pred -----------------------------------------------------------------------hhhhCCccc
Confidence 123467889
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhh
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIE 375 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~ 375 (541)
|||++|+|.|+.+++. +|+|+|.|||+.-.++... .|+.++|++.++. +-.+.+.+|++.|.
T Consensus 159 SGGqRQRVMIAMALan------~P~lLIADEPTTALDVtvQ-----------aQIL~Ll~~Lq~~~gMa~lfITHDL~iV 221 (534)
T COG4172 159 SGGQRQRVMIAMALAN------EPDLLIADEPTTALDVTVQ-----------AQILDLLKELQAELGMAILFITHDLGIV 221 (534)
T ss_pred CcchhhHHHHHHHHcC------CCCeEeecCCcchhhhhhH-----------HHHHHHHHHHHHHhCcEEEEEeccHHHH
Confidence 9999999999999999 9999999999665554433 3888888888654 77888999998876
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
. ++..+|+|.
T Consensus 222 r-~~ADrV~VM 231 (534)
T COG4172 222 R-KFADRVYVM 231 (534)
T ss_pred H-HhhhhEEEE
Confidence 4 466676654
No 330
>PLN03140 ABC transporter G family member; Provisional
Probab=99.70 E-value=2.2e-17 Score=197.45 Aligned_cols=189 Identities=15% Similarity=0.138 Sum_probs=128.3
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CC---CCCeeecccCCccceecccccccccccccEEEEeC
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DL---YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~---~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
.+.+|+|||+.| +|+|||||||||||++|++. +. .|+|. ++|.. .... ..++.++||+|
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~---~nG~~----~~~~---~~~~~i~yv~Q 246 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEIT---YNGYR----LNEF---VPRKTSAYISQ 246 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEE---ECCEe----chhh---cccceeEEecc
Confidence 467999999999 99999999999999999765 33 68888 77762 2111 12457999999
Q ss_pred CCccccccccccCCCcccceeccccccc----------hhhHhHh------------------------hhHHHHHHHhC
Q psy91 160 STVLTPSLIGSLFQTDRDYIGFATLPEQ----------VHRKSVK------------------------KGFDFTLMVVG 205 (541)
Q Consensus 160 ~~~l~~~lig~~~qtv~e~l~~~~~~~~----------~~~~e~~------------------------~~v~~~L~~vG 205 (541)
++.+++++ ||+|++.|+..... ..+.+.. ..++.+++.+|
T Consensus 247 ~d~~~~~l------TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lG 320 (1470)
T PLN03140 247 NDVHVGVM------TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILG 320 (1470)
T ss_pred cccCCCcC------cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcC
Confidence 99999999 99999998721110 0111100 01222333333
Q ss_pred CCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhccc
Q psy91 206 ESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 206 L~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~ 285 (541)
|.++.++.
T Consensus 321 L~~~~~t~------------------------------------------------------------------------ 328 (1470)
T PLN03140 321 LDICKDTI------------------------------------------------------------------------ 328 (1470)
T ss_pred CccccCce------------------------------------------------------------------------
Confidence 33321111
Q ss_pred ccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcc
Q psy91 286 DLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKT 364 (541)
Q Consensus 286 ~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt 364 (541)
..+..+..+|+|++|+++|+++++. +++++++|||..|.+..+.. ++.+.|++..+ .++|
T Consensus 329 --vg~~~~rglSGGerkRVsia~aL~~------~p~vlllDEPTsGLDs~t~~-----------~i~~~Lr~la~~~g~T 389 (1470)
T PLN03140 329 --VGDEMIRGISGGQKKRVTTGEMIVG------PTKTLFMDEISTGLDSSTTY-----------QIVKCLQQIVHLTEAT 389 (1470)
T ss_pred --eCCccccCCCcccceeeeehhhhcC------CCcEEEEeCCCcCccHHHHH-----------HHHHHHHHHHHhcCCE
Confidence 1233456789999999999999998 99999999998886655543 67777777755 4788
Q ss_pred eeeccccchhhhhcccceeEEE
Q psy91 365 TTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 365 ~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++.+|...-+.-.+..++.++
T Consensus 390 viis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 390 VLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred EEEEecCCCHHHHHHhheEEEe
Confidence 8998886532222355555554
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.70 E-value=8.8e-18 Score=188.00 Aligned_cols=185 Identities=13% Similarity=0.113 Sum_probs=130.4
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
...+.++||++.|+++.+|+++||+| ||+|||||||||||++|+|. +++|+|. + |. .
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~---~-~~----~------- 381 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH---C-GT----K------- 381 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE---E-CC----C-------
Confidence 34799999999999889999999999 99999999999999999664 5678877 5 43 1
Q ss_pred cccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+||++|+. .+++.+ ||.+++.++........ ....+..++..+|+.+
T Consensus 382 ---~~i~y~~q~~~~l~~~~------tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~------------------- 431 (635)
T PRK11147 382 ---LEVAYFDQHRAELDPEK------TVMDNLAEGKQEVMVNG--RPRHVLGYLQDFLFHP------------------- 431 (635)
T ss_pred ---cEEEEEeCcccccCCCC------CHHHHHHhhcccccccc--hHHHHHHHHHhcCCCH-------------------
Confidence 1489999975 588888 99999876521100000 0112222333322210
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
...++.+..+|+|+++++.|+
T Consensus 432 -----------------------------------------------------------~~~~~~~~~LSgGekqRl~la 452 (635)
T PRK11147 432 -----------------------------------------------------------KRAMTPVKALSGGERNRLLLA 452 (635)
T ss_pred -----------------------------------------------------------HHHhChhhhCCHHHHHHHHHH
Confidence 012345667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +++++|+|||+.|.+..+.. .+.+++.+. +.++++++|+.++.. .++.++.++
T Consensus 453 ~al~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~~---~~tvi~vSHd~~~~~-~~~d~i~~l 510 (635)
T PRK11147 453 RLFLK------PSNLLILDEPTNDLDVETLE-----------LLEELLDSY---QGTVLLVSHDRQFVD-NTVTECWIF 510 (635)
T ss_pred HHHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHhC---CCeEEEEECCHHHHH-HhcCEEEEE
Confidence 99998 99999999998887765543 444444443 348899999977553 355666655
No 332
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.70 E-value=9.3e-18 Score=203.18 Aligned_cols=201 Identities=16% Similarity=0.188 Sum_probs=140.8
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+|+||+++|+. ..+|+||||+| ||+|+||||||||+++| +..+..|+|. ++|. ++.....
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~---IdG~----dI~~i~~ 1355 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII---IDGL----NIAKIGL 1355 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE---ECCE----EccccCH
Confidence 56999999999975 46999999999 99999999999999999 4567889999 8888 4444444
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+++|+|++.||. | |+++|+.... ..+ .+.+..+++.+|+...-.+. =.|++.
T Consensus 1356 ~~LR~~i~iVpQdp~LF~---g----TIr~NLdp~~---~~s----deei~~al~~a~l~~~I~~l----p~GLdt---- 1413 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFS---G----SLRMNLDPFS---QYS----DEEVWWALELAHLKTFVSAL----PDKLDH---- 1413 (1522)
T ss_pred HHHHhcCeEECCCCcccC---c----cHHHHcCccc---CCC----HHHHHHHHHHcCcHHHHhhC----ccCCCc----
Confidence 456678999999999984 3 8999997321 112 23455667777775321110 001110
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+|+.| ..+|+||+|+++|+
T Consensus 1414 ---------------------------------------~v~e~G---------------------~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1414 ---------------------------------------ECAEGG---------------------ENLSVGQRQLVCLA 1433 (1522)
T ss_pred ---------------------------------------eecCCC---------------------CcCCHHHHHHHHHH
Confidence 012222 35899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
|+++. +++++|+|||+..-+...+. .+.+.++++ ..++|+++..|.++... -..++.+++
T Consensus 1434 RALLr------~~~ILiLDEaTSalD~~Te~-----------~Iq~~l~~~-~~~~TvI~IAHRl~ti~--~~DrIlVld 1493 (1522)
T TIGR00957 1434 RALLR------KTKILVLDEATAAVDLETDN-----------LIQSTIRTQ-FEDCTVLTIAHRLNTIM--DYTRVIVLD 1493 (1522)
T ss_pred HHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHH-cCCCEEEEEecCHHHHH--hCCEEEEEE
Confidence 99998 99999999997764433332 444445443 24688888888875433 345666665
No 333
>PTZ00243 ABC transporter; Provisional
Probab=99.70 E-value=1.1e-17 Score=202.44 Aligned_cols=201 Identities=19% Similarity=0.204 Sum_probs=139.8
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.|+||+++|++ ..+|+||||+| ||+|+||||||||+++| +..+..|+|+ ++|. ++.....
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~---IDG~----di~~i~l 1379 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR---VNGR----EIGAYGL 1379 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCE----EcccCCH
Confidence 56999999999965 35999999999 99999999999999999 4567789999 8888 3333344
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..++.+++|+|++.||. | |+++|+.... .. ..+.+..+++.+|+...-.+ + +
T Consensus 1380 ~~LR~~I~iVpQdp~LF~---g----TIreNIdp~~---~~----sdeeI~~Al~~a~l~~~I~~--------l--p--- 1432 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFD---G----TVRQNVDPFL---EA----SSAEVWAALELVGLRERVAS--------E--S--- 1432 (1560)
T ss_pred HHHHhcceEECCCCcccc---c----cHHHHhCccc---CC----CHHHHHHHHHHCCChHHHhh--------C--c---
Confidence 456678999999999984 3 8999997531 11 22456677888887542110 0 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+|++- .+|+. -..+|+||+|+++|+
T Consensus 1433 -------------------------------~Gldt---~vge~---------------------G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243 1433 -------------------------------EGIDS---RVLEG---------------------GSNYSVGQRQLMCMA 1457 (1560)
T ss_pred -------------------------------ccccc---cccCC---------------------cCcCCHHHHHHHHHH
Confidence 00000 01222 235899999999999
Q ss_pred eeEEEeeecCee-eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVK-LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~-~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. + ++++|+|||+..-+...+. ++.+.|.+. ..++|+++..|.+.... -..++.++
T Consensus 1458 RALL~------~~~~ILlLDEATSaLD~~te~-----------~Iq~~L~~~-~~~~TvI~IAHRl~ti~--~~DrIlVL 1517 (1560)
T PTZ00243 1458 RALLK------KGSGFILMDEATANIDPALDR-----------QIQATVMSA-FSAYTVITIAHRLHTVA--QYDKIIVM 1517 (1560)
T ss_pred HHHhc------CCCCEEEEeCCCccCCHHHHH-----------HHHHHHHHH-CCCCEEEEEeccHHHHH--hCCEEEEE
Confidence 99986 6 8999999997754433332 444444433 23688888888875443 34566665
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
+
T Consensus 1518 d 1518 (1560)
T PTZ00243 1518 D 1518 (1560)
T ss_pred E
Confidence 4
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=99.70 E-value=7.7e-18 Score=185.88 Aligned_cols=182 Identities=12% Similarity=0.055 Sum_probs=132.8
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+.++|+++.|++. .|+++||+| +|+|||||||||||++|+|. +..|+|. ++
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~---~~-------------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD---PE-------------- 399 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---Ee--------------
Confidence 3568999999999875 599999998 99999999999999999664 4566655 21
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++|++|+..+.+.+ ||.+++.++.. .... ...+.++++.+|+.+
T Consensus 400 ---~~i~y~~Q~~~~~~~~------tv~e~l~~~~~--~~~~---~~~~~~~L~~l~l~~-------------------- 445 (590)
T PRK13409 400 ---LKISYKPQYIKPDYDG------TVEDLLRSITD--DLGS---SYYKSEIIKPLQLER-------------------- 445 (590)
T ss_pred ---eeEEEecccccCCCCC------cHHHHHHHHhh--hcCh---HHHHHHHHHHCCCHH--------------------
Confidence 1489999998888888 99999876411 0000 112233344443321
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..++.+..+|+|++|++.|++
T Consensus 446 -----------------------------------------------------------~~~~~~~~LSGGe~QRvaiAr 466 (590)
T PRK13409 446 -----------------------------------------------------------LLDKNVKDLSGGELQRVAIAA 466 (590)
T ss_pred -----------------------------------------------------------HHhCCcccCCHHHHHHHHHHH
Confidence 234567789999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.|.+..+.. .+.+.|.+..+ .+.++++.+|+++... .+..++.++.
T Consensus 467 aL~~------~p~llLLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tviivsHD~~~~~-~~aDrvivl~ 528 (590)
T PRK13409 467 CLSR------DADLYLLDEPSAHLDVEQRL-----------AVAKAIRRIAEEREATALVVDHDIYMID-YISDRLMVFE 528 (590)
T ss_pred HHhc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEc
Confidence 9998 99999999998887665543 56666666654 3788999999977543 3566777664
No 335
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.70 E-value=9.8e-18 Score=185.04 Aligned_cols=195 Identities=16% Similarity=0.123 Sum_probs=134.3
Q ss_pred Cceeeeccccccccc-----ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc
Q psy91 78 DYIGFATLPEQVHRK-----SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~-----~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
..|+++||+++|+++ .+|+|+||++ ||+||||||||||+++|++ .|.+|+|. ++|. .+..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~---~~g~----~i~~ 408 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL---LDGA----AVSA 408 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCE----ECCC
Confidence 468999999999752 5999999999 9999999999999999954 67899999 8887 3332
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......++.++||+|+..+|.. |+++|.. + ....+.+..+++.+|+...-..
T Consensus 409 ~~~~~~~~~i~~v~q~~~lf~~-------ti~~n~~----~-----~~~~~~~~~~~~~~~l~~~~~~------------ 460 (555)
T TIGR01194 409 DSRDDYRDLFSAIFADFHLFDD-------LIGPDEG----E-----HASLDNAQQYLQRLEIADKVKI------------ 460 (555)
T ss_pred CCHHHHHhhCcEEccChhhhhh-------hhhcccc----c-----chhHHHHHHHHHHcCCchhhcc------------
Confidence 2233445679999999888854 5667631 1 1122345556666665431000
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..+|. . ....+|+|++|++
T Consensus 461 --------------------------------lp~g~---------------------------~--t~~~LSgGq~qRl 479 (555)
T TIGR01194 461 --------------------------------EDGGF---------------------------S--TTTALSTGQQKRL 479 (555)
T ss_pred --------------------------------ccccc---------------------------C--CcccCCHHHHHHH
Confidence 00000 0 0145899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh-hhhcccCcceeeccccchhhhhccccee
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF-NDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l-~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+|+++.+. +++++|+|||+.+-+..+.. .+.+.+ ......++|+++.+|+.... ....++
T Consensus 480 alaRall~------~~~ililDE~ts~LD~~~~~-----------~i~~~l~~~~~~~~~tiiiisH~~~~~--~~~d~i 540 (555)
T TIGR01194 480 ALICAWLE------DRPILLFDEWAADQDPAFKR-----------FFYEELLPDLKRQGKTIIIISHDDQYF--ELADQI 540 (555)
T ss_pred HHHHHHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeccHHHH--HhCCEE
Confidence 99999999 99999999998876655543 343322 22234578999999987643 345566
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.+++
T Consensus 541 ~~l~ 544 (555)
T TIGR01194 541 IKLA 544 (555)
T ss_pred EEEE
Confidence 5553
No 336
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.1e-18 Score=154.79 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=130.9
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
+..++|+...+.+.++.++||++ .|.||||||||||||+| +..|.+|+|+ ++|. .++..+ ....
T Consensus 3 L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~---~~~~----~i~~~~-~~~~ 74 (209)
T COG4133 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY---WQGE----PIQNVR-ESYH 74 (209)
T ss_pred chhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEE---ecCC----CCccch-hhHH
Confidence 45678888889999999999999 89999999999999999 5578899999 8777 222211 1122
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.+-|+--...+=+.+ ||.||+.|-....+ ......+.++++.+||.+.
T Consensus 75 ~~l~yLGH~~giK~eL------Ta~ENL~F~~~~~~---~~~~~~i~~Al~~vgL~g~---------------------- 123 (209)
T COG4133 75 QALLYLGHQPGIKTEL------TALENLHFWQRFHG---SGNAATIWEALAQVGLAGL---------------------- 123 (209)
T ss_pred HHHHHhhccccccchh------hHHHHHHHHHHHhC---CCchhhHHHHHHHcCcccc----------------------
Confidence 3456777777888889 99999998622111 1223456778888888762
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+.++..+|.||+++++|++-.+
T Consensus 124 ---------------------------------------------------------~dlp~~~LSAGQqRRvAlArL~l 146 (209)
T COG4133 124 ---------------------------------------------------------EDLPVGQLSAGQQRRVALARLWL 146 (209)
T ss_pred ---------------------------------------------------------cccchhhcchhHHHHHHHHHHHc
Confidence 23345678999999999999988
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
. ...|+|+|||...-+..+. ..|...+.+-...+--++..+|.
T Consensus 147 s------~~pLWiLDEP~taLDk~g~-----------a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 147 S------PAPLWILDEPFTALDKEGV-----------ALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred C------CCCceeecCcccccCHHHH-----------HHHHHHHHHHhcCCCEEEEecCC
Confidence 8 8999999999665444433 26666666666666656666654
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.69 E-value=4e-17 Score=183.10 Aligned_cols=193 Identities=17% Similarity=0.126 Sum_probs=132.2
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|+++|+++.|+ ++.+|+++||+| +|+||||||||||+++|++. +..|+|. .++
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~---~~~------------- 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT---KPA------------- 513 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEe---ecC-------------
Confidence 4689999999995 557999999999 99999999999999999664 3345544 211
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchh-hHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVH-RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~-~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+..++||+|++.+++ . |++||+.++....... .....+.+..+++.+|+.+..+. +
T Consensus 514 --~~~i~~v~Q~~~l~~-~------tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-----------~--- 570 (659)
T TIGR00954 514 --KGKLFYVPQRPYMTL-G------TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-----------E--- 570 (659)
T ss_pred --CCcEEEECCCCCCCC-c------CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-----------c---
Confidence 346899999987653 4 8999998873211110 11112345566777776532111 0
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.|+.. .. .....+|+|++|++.|+
T Consensus 571 ---------------~g~~~----------------------------------------~~-~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 571 ---------------GGWSA----------------------------------------VQ-DWMDVLSGGEKQRIAMA 594 (659)
T ss_pred ---------------CCccc----------------------------------------cc-ccccCCCHHHHHHHHHH
Confidence 00000 00 12346899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++|+|||..+-+..... .+.+.+.+ .++++++.+|+.+.. ..+.++.+++
T Consensus 595 Ral~~------~p~illLDEpts~LD~~~~~-----------~l~~~l~~---~~~tvI~isH~~~~~--~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYH------KPQFAILDECTSAVSVDVEG-----------YMYRLCRE---FGITLFSVSHRKSLW--KYHEYLLYMD 652 (659)
T ss_pred HHHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHH---cCCEEEEEeCchHHH--HhCCEEEEEe
Confidence 99999 99999999998876655442 44444543 378899999998754 4567777765
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=4.6e-18 Score=189.98 Aligned_cols=211 Identities=16% Similarity=0.159 Sum_probs=122.8
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++||+++|+++.+|++|||+| ||+|||||||||||++|+|. +++|+|. +.|.
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~---~~~~--------------- 63 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYT---FPGN--------------- 63 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ecCC---------------
Confidence 68999999999999999999999 99999999999999999664 6678887 6554
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
..++|+.|+...+ .. ++.+.+.-.. ... ......+......... ..+..............
T Consensus 64 ~~i~~~~q~~~~~-~~------~~~~~v~~~~--~~~------~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 124 (638)
T PRK10636 64 WQLAWVNQETPAL-PQ------PALEYVIDGD--REY------RQLEAQLHDANERNDG-HAIATIHGKLDAIDAWT--- 124 (638)
T ss_pred CEEEEEecCCCCC-CC------CHHHHHHHhh--HHH------HHHHHHHHHHhccCCH-HHHHHHHHHHHhcCCcc---
Confidence 1368888853222 12 3222221100 000 0000000000000000 00000000000000000
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
. .. --..++..|.......++.+..+|+|+++++.|+++++
T Consensus 125 --------------------~-~~------------------~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~ 165 (638)
T PRK10636 125 --------------------I-RS------------------RAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI 165 (638)
T ss_pred --------------------h-HH------------------HHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc
Confidence 0 00 00224445544322346677889999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +|+++|+|||+.|.+..... .+.++|.+. +.++++++|+.++.. .++.++.++.
T Consensus 166 ~------~P~lLLLDEPtn~LD~~~~~-----------~L~~~L~~~---~~tviivsHd~~~l~-~~~d~i~~L~ 220 (638)
T PRK10636 166 C------RSDLLLLDEPTNHLDLDAVI-----------WLEKWLKSY---QGTLILISHDRDFLD-PIVDKIIHIE 220 (638)
T ss_pred c------CCCEEEEcCCCCcCCHHHHH-----------HHHHHHHhC---CCeEEEEeCCHHHHH-HhcCEEEEEe
Confidence 8 99999999998877765543 344455443 458899999987654 3555555554
No 339
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.68 E-value=2e-17 Score=182.39 Aligned_cols=193 Identities=13% Similarity=0.048 Sum_probs=132.3
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.++|++++|++ +++|+|+||+| ||+||||||||||+++|+| .+.+|+|. ++|. .+......
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~---~~g~----~~~~~~~~ 393 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL---LDGK----PVTAEQPE 393 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCE----ECCCCCHH
Confidence 36899999999975 56999999999 9999999999999999954 57889999 8887 33322333
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|+..+++. |+++| + .. ...+.+.++++.+|+.....
T Consensus 394 ~~~~~i~~v~q~~~lf~~-------ti~~n---~---~~----~~~~~~~~~~~~~~l~~~~~----------------- 439 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFDQ-------LLGPE---G---KP----ANPALVEKWLERLKMAHKLE----------------- 439 (547)
T ss_pred HHhhheEEEecChhHHHH-------hhccc---c---Cc----hHHHHHHHHHHHcCCchhhh-----------------
Confidence 455689999999988753 46666 1 01 11223444555555432000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.|+ |. . .-..+|+|++|+++|++
T Consensus 440 ---------------------------------------~~~---~~------------~---~G~~LSgGq~qRl~lAR 462 (547)
T PRK10522 440 ---------------------------------------LED---GR------------I---SNLKLSKGQKKRLALLL 462 (547)
T ss_pred ---------------------------------------ccc---cC------------C---CCCCCCHHHHHHHHHHH
Confidence 000 00 0 01258999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+. +++++|+|||+.+-+..++. .+.+.+.+..+ .++|+++.+|..+. .+...++.+++
T Consensus 463 al~~------~~~ililDE~ts~LD~~~~~-----------~i~~~l~~~~~~~~~tvi~itH~~~~--~~~~d~i~~l~ 523 (547)
T PRK10522 463 ALAE------ERDILLLDEWAADQDPHFRR-----------EFYQVLLPLLQEMGKTIFAISHDDHY--FIHADRLLEMR 523 (547)
T ss_pred HHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEEechHH--HHhCCEEEEEE
Confidence 9999 99999999998876655543 44444543332 47899999998654 33455665553
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.3e-17 Score=184.46 Aligned_cols=182 Identities=12% Similarity=0.129 Sum_probs=123.7
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|.++||++.|+++.+|+++||+| ||+|||||||||||++|+|. +++|+|. +.+.
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~---~~~~------------ 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG---LAKG------------ 374 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE---ECCC------------
Confidence 34799999999999889999999999 99999999999999999664 5677776 4321
Q ss_pred cccccEEEEeCCC--ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 149 GRQYPWGVVEGST--VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 149 ~~~~~~g~V~Q~~--~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
..+||++|+. .+.+.. ++.+++.. .. .......+..++..+|+.+
T Consensus 375 ---~~igy~~Q~~~~~l~~~~------~~~~~~~~--~~----~~~~~~~~~~~L~~~~l~~------------------ 421 (638)
T PRK10636 375 ---IKLGYFAQHQLEFLRADE------SPLQHLAR--LA----PQELEQKLRDYLGGFGFQG------------------ 421 (638)
T ss_pred ---EEEEEecCcchhhCCccc------hHHHHHHH--hC----chhhHHHHHHHHHHcCCCh------------------
Confidence 1589999964 233333 44433210 00 0011122333333333311
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
...+..+..+|+|+++++.|
T Consensus 422 ------------------------------------------------------------~~~~~~~~~LSgGekqRl~L 441 (638)
T PRK10636 422 ------------------------------------------------------------DKVTEETRRFSGGEKARLVL 441 (638)
T ss_pred ------------------------------------------------------------hHhcCchhhCCHHHHHHHHH
Confidence 01234566799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||+.|.+..... .+.++|.+. +.++++++|+.++.. +++.++.++
T Consensus 442 a~~l~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~L~~~---~gtvi~vSHd~~~~~-~~~d~i~~l 500 (638)
T PRK10636 442 ALIVWQ------RPNLLLLDEPTNHLDLDMRQ-----------ALTEALIDF---EGALVVVSHDRHLLR-STTDDLYLV 500 (638)
T ss_pred HHHHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHc---CCeEEEEeCCHHHHH-HhCCEEEEE
Confidence 999998 99999999998887766553 445555544 248899999987543 356666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 501 ~ 501 (638)
T PRK10636 501 H 501 (638)
T ss_pred E
Confidence 4
No 341
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.68 E-value=2.3e-17 Score=163.33 Aligned_cols=159 Identities=15% Similarity=0.065 Sum_probs=108.3
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCccccee
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIG 180 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~ 180 (541)
+|+|||||||||||++|++ .+.+|+|. ++|. .++|++|+....+.. ||.|++.
T Consensus 29 ~i~G~NGsGKSTLlk~L~G~~~p~~G~i~---~~g~----------------~i~~~~q~~~~~~~~------tv~e~l~ 83 (246)
T cd03237 29 GILGPNGIGKTTFIKMLAGVLKPDEGDIE---IELD----------------TVSYKPQYIKADYEG------TVRDLLS 83 (246)
T ss_pred EEECCCCCCHHHHHHHHhCCCcCCCCeEE---ECCc----------------eEEEecccccCCCCC------CHHHHHH
Confidence 9999999999999999955 46677777 5543 479999988777777 8988875
Q ss_pred ccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhc
Q psy91 181 FATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKG 260 (541)
Q Consensus 181 ~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g 260 (541)
+...... . ....+.++++.+|+..
T Consensus 84 ~~~~~~~--~--~~~~~~~~l~~l~l~~---------------------------------------------------- 107 (246)
T cd03237 84 SITKDFY--T--HPYFKTEIAKPLQIEQ---------------------------------------------------- 107 (246)
T ss_pred HHhhhcc--c--cHHHHHHHHHHcCCHH----------------------------------------------------
Confidence 4310000 0 0011222333332211
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhh
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESW 340 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~ 340 (541)
..++.+..+|+|++|++.|+++++. +++++|+|||..+.+..+..
T Consensus 108 ---------------------------~~~~~~~~LSgGe~qrv~iaraL~~------~p~llllDEPt~~LD~~~~~-- 152 (246)
T cd03237 108 ---------------------------ILDREVPELSGGELQRVAIAACLSK------DADIYLLDEPSAYLDVEQRL-- 152 (246)
T ss_pred ---------------------------HhhCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCHHHHH--
Confidence 1233456799999999999999998 99999999997776655443
Q ss_pred hhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 341 RACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 341 ~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.+.+.|.+..+ .++++++.+|+++... .++.++.++.
T Consensus 153 ---------~l~~~l~~~~~~~~~tiiivsHd~~~~~-~~~d~i~~l~ 190 (246)
T cd03237 153 ---------MASKVIRRFAENNEKTAFVVEHDIIMID-YLADRLIVFE 190 (246)
T ss_pred ---------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEc
Confidence 55666666544 4788999999977443 3566666663
No 342
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.68 E-value=3.3e-17 Score=197.87 Aligned_cols=201 Identities=14% Similarity=0.185 Sum_probs=141.1
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.|+||+++|+. ..+|+||||+| ||+|+||||||||+++|++. +.+|+|+ ++|. ++......
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~---IdG~----di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQ---IDGV----SWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEE---ECCE----EcccCCHH
Confidence 46999999999964 67999999999 99999999999999999332 3689999 8887 33333344
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.++||+|++.+|+ | |+++|+.... . ...+.+..+++.+|+...-.+ .-.|++.
T Consensus 1289 ~lR~~is~IpQdp~LF~---G----TIR~NLdp~~---~----~tdeei~~aL~~~~L~~~i~~----lp~GLdt----- 1345 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFS---G----TFRKNLDPYE---Q----WSDEEIWKVAEEVGLKSVIEQ----FPDKLDF----- 1345 (1490)
T ss_pred HHHhceEEEeCCCccCc---c----CHHHHhCccc---C----CCHHHHHHHHHHCCCHHHHHh----Ccccccc-----
Confidence 56678999999999984 3 8999996431 1 123456677888887542110 0001110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.+|+. -..+|+|++|+++|+|
T Consensus 1346 --------------------------------------~v~e~---------------------G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1346 --------------------------------------VLVDG---------------------GYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred --------------------------------------ccccC---------------------CCcCCHHHHHHHHHHH
Confidence 01111 1348999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.+-+.... ..+.+.|.+.. .++|+++..|.++... ...++.+++
T Consensus 1367 ALLr------~~~ILlLDEaTS~lD~~Te-----------~~I~~~L~~~~-~~~TvI~IaHRl~ti~--~~DrIlvL~ 1425 (1490)
T TIGR01271 1367 SILS------KAKILLLDEPSAHLDPVTL-----------QIIRKTLKQSF-SNCTVILSEHRVEALL--ECQQFLVIE 1425 (1490)
T ss_pred HHhC------CCCEEEEeCCcccCCHHHH-----------HHHHHHHHHHc-CCCEEEEEecCHHHHH--hCCEEEEEE
Confidence 9999 9999999999776443333 25555555443 3688888898875443 355666664
No 343
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.68 E-value=7.8e-17 Score=162.42 Aligned_cols=188 Identities=13% Similarity=0.112 Sum_probs=122.9
Q ss_pred CCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccc
Q psy91 75 TDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
...+.|.++++++. .+.+|+++||+| +|+|||||||||||++|+|. +..|+|. ++|
T Consensus 35 ~~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~---i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK---HSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECC-----------
Confidence 44567999999885 467999999999 99999999999999999664 4567666 444
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.++|++|+..+++ . |+.+|+.++.... . ..+..++..+++...
T Consensus 99 ------~i~yv~q~~~l~~-~------tv~enl~~~~~~~---~----~~~~~~l~~~~l~~~----------------- 141 (282)
T cd03291 99 ------RISFSSQFSWIMP-G------TIKENIIFGVSYD---E----YRYKSVVKACQLEED----------------- 141 (282)
T ss_pred ------EEEEEeCcccccc-c------CHHHHhhcccccC---H----HHHHHHHHHhCCHHH-----------------
Confidence 2799999987664 5 8999998752110 0 111222333332110
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhccc-ccCCCCCCCCCCCCCCcceE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~-~~~~~~~~~~ls~g~~q~v~ 305 (541)
++.+... +...+..+..+|+|++|++.
T Consensus 142 ----------------------------------------------------l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 142 ----------------------------------------------------ITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred ----------------------------------------------------HHhccccccceecCCCCcCCHHHHHHHH
Confidence 0000000 00011234578999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||..|-+..... .+.+.+......+.++++.+|+.+... ...++.+
T Consensus 170 lAraL~~------~p~iLiLDEPt~gLD~~~~~-----------~l~~~ll~~~~~~~tIiiisH~~~~~~--~~d~i~~ 230 (282)
T cd03291 170 LARAVYK------DADLYLLDSPFGYLDVFTEK-----------EIFESCVCKLMANKTRILVTSKMEHLK--KADKILI 230 (282)
T ss_pred HHHHHhc------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHhhCCCEEEEEeCChHHHH--hCCEEEE
Confidence 9999998 99999999998876654432 333322111123678889999887643 4556655
Q ss_pred E
Q psy91 386 V 386 (541)
Q Consensus 386 I 386 (541)
+
T Consensus 231 l 231 (282)
T cd03291 231 L 231 (282)
T ss_pred E
Confidence 5
No 344
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.67 E-value=4.3e-17 Score=168.74 Aligned_cols=195 Identities=20% Similarity=0.269 Sum_probs=130.5
Q ss_pred CCCCCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccc
Q psy91 74 ATDRDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 74 ~~~~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
+...+.+.++++++.-+ .+++|++|||++ |||||||||||||.|+|.| .+.+|.|+ ++|- ++.
T Consensus 329 P~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR---LDga----~l~ 401 (580)
T COG4618 329 PAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR---LDGA----DLR 401 (580)
T ss_pred CCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE---ecch----hhh
Confidence 44456788888887654 357999999999 9999999999999999954 67889999 8888 555
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCccccee-ccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIG-FATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~-~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
.+..+.+-+++||++|+..||+ | |+.||+. |. .....+... ++-..-|.. +.+..+
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~---G----TIaeNIaRf~---~~~d~~kIi----eAA~lAgvH--------elIl~l- 458 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFD---G----TIAENIARFG---EEADPEKVI----EAARLAGVH--------ELILRL- 458 (580)
T ss_pred cCCHHHhccccCcCcccceecC---C----cHHHHHHhcc---ccCCHHHHH----HHHHHcChH--------HHHHhC-
Confidence 5555667789999999999984 4 7999986 33 111111111 111111111 111111
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
++ ||.+ .+|+.| ..+|+||+|
T Consensus 459 -P~------------------GYdT-------------------~iG~~G---------------------~~LSgGQRQ 479 (580)
T COG4618 459 -PQ------------------GYDT-------------------RIGEGG---------------------ATLSGGQRQ 479 (580)
T ss_pred -cC------------------CccC-------------------ccCCCC---------------------CCCCchHHH
Confidence 11 1110 122222 358999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchh
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDI 374 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di 374 (541)
|+.++++++- +|.|.|+|||..-.+..-+. .+.+-+.+..+.+.++++.+|...+
T Consensus 480 RIaLARAlYG------~P~lvVLDEPNsNLD~~GE~-----------AL~~Ai~~~k~rG~~vvviaHRPs~ 534 (580)
T COG4618 480 RIALARALYG------DPFLVVLDEPNSNLDSEGEA-----------ALAAAILAAKARGGTVVVIAHRPSA 534 (580)
T ss_pred HHHHHHHHcC------CCcEEEecCCCCCcchhHHH-----------HHHHHHHHHHHcCCEEEEEecCHHH
Confidence 9999999999 99999999995544333332 4555566666778888888877554
No 345
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=4e-17 Score=146.69 Aligned_cols=166 Identities=17% Similarity=0.178 Sum_probs=119.1
Q ss_pred ceeeeccccccc-----c--cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccc
Q psy91 79 YIGFATLPEQVH-----R--KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 79 ~i~~~~l~~~~~-----~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
.+.++|++++|- + -++|+++||++ ++-|||||||||||++| ...+++|+|++.+. |. ++++-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~-g~--~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHE-GE--WVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeC-cc--hhhhh
Confidence 467778888873 2 25999999999 88999999999999999 55789999994332 32 12221
Q ss_pred c-c---ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 144 G-T---KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 144 ~-~---~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
. . -...+++.+|||.|.-...|.. ...+.++-+.+..+++.+....++..++..+++..
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV------~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe----------- 143 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRV------SALDVVAEPLLARGVPREVARAKAADLLTRLNLPE----------- 143 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCc------chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH-----------
Confidence 1 1 1234566799999988888877 66776666555556666667777766666665532
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR 299 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g 299 (541)
.+..-.+...|||
T Consensus 144 -------------------------------------------------------------------rLW~LaPaTFSGG 156 (235)
T COG4778 144 -------------------------------------------------------------------RLWSLAPATFSGG 156 (235)
T ss_pred -------------------------------------------------------------------HHhcCCCcccCCc
Confidence 1223346678999
Q ss_pred CCcceEEeeeEEEeeecCeeeeEEEEcCCCC-CCCccch
Q psy91 300 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGF-GDSINSE 337 (541)
Q Consensus 300 ~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~-Gd~~~~~ 337 (541)
++|++.|++..+. +..++++|||+. .|+.|..
T Consensus 157 EqQRVNIaRgfiv------d~pILLLDEPTasLDa~Nr~ 189 (235)
T COG4778 157 EQQRVNIARGFIV------DYPILLLDEPTASLDATNRA 189 (235)
T ss_pred hheehhhhhhhhc------cCceEEecCCcccccccchH
Confidence 9999999999887 899999999955 5555544
No 346
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=2.3e-17 Score=164.02 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=122.6
Q ss_pred eccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecc--------cCCccceeccccc
Q psy91 83 ATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPN--------VNGSNTVIEVAGT 145 (541)
Q Consensus 83 ~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~--------~~G~~~~~~~~~~ 145 (541)
.+|+++|+.+ .+|+++++ + +|+|||||||||||++|+| .++.|+|+..+ +.|..+. ..
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~----~~ 78 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQ----NY 78 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhh----hh
Confidence 3678899765 59999995 5 9999999999999999944 56788884110 3344211 11
Q ss_pred ccccc--cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 146 KVRGR--QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 146 ~~~~~--~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+ ...++|++|...+++ . ++.+++.+. + ........+..+++.+|+..
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~-~------~~~~~i~~~-l----~~~~~~~~~~~~l~~~gl~~--------------- 131 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIP-K------AVKGKVGEL-L----KKKDERGKLDELVDQLELRH--------------- 131 (255)
T ss_pred hHHhhhcccceeeecchhccCc-h------HHHHHHHHH-h----chhHHHHHHHHHHHHcCCch---------------
Confidence 01111 124688888776665 2 344444332 1 11122234455566555432
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
..+..+..+|+|++|+
T Consensus 132 ----------------------------------------------------------------~~~~~~~~LS~G~~qr 147 (255)
T cd03236 132 ----------------------------------------------------------------VLDRNIDQLSGGELQR 147 (255)
T ss_pred ----------------------------------------------------------------hhcCChhhCCHHHHHH
Confidence 1112344689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+.|+++++. +++++|+|||..|-+..+.. .+.+.+.+..+.++++++.+|+.+... .+..++
T Consensus 148 v~laral~~------~p~illlDEPts~LD~~~~~-----------~l~~~l~~l~~~~~tIIiiSHd~~~~~-~~ad~i 209 (255)
T cd03236 148 VAIAAALAR------DADFYFFDEPSSYLDIKQRL-----------NAARLIRELAEDDNYVLVVEHDLAVLD-YLSDYI 209 (255)
T ss_pred HHHHHHHHh------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEECCHHHHH-HhCCEE
Confidence 999999988 99999999998886655443 455666665555788999999977543 345555
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 210 ~~l~ 213 (255)
T cd03236 210 HCLY 213 (255)
T ss_pred EEEC
Confidence 5553
No 347
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.66 E-value=4.9e-17 Score=158.76 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=116.6
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccc--ccccccCCCcccc
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTP--SLIGSLFQTDRDY 178 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~--~lig~~~qtv~e~ 178 (541)
+|+||||||||||+++|++ .+.+|+|. ++|+.+ . ..++.++|++|+..+++ .+ |+.+|
T Consensus 10 ~l~G~nGsGKSTLl~~l~G~~~~~~G~i~---~~g~~~----~-----~~~~~i~~v~q~~~~~~~~~~------tv~~~ 71 (223)
T TIGR03771 10 GLLGPNGAGKTTLLRAILGLIPPAKGTVK---VAGASP----G-----KGWRHIGYVPQRHEFAWDFPI------SVAHT 71 (223)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCccc----h-----HhhCcEEEecccccccCCCCc------cHHHH
Confidence 9999999999999999965 56789999 888721 1 12356999999987643 35 88888
Q ss_pred eecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhh
Q psy91 179 IGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHR 254 (541)
Q Consensus 179 l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~ 254 (541)
+.++.... . .........+..+++.+|+..
T Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------------------------------------------- 105 (223)
T TIGR03771 72 VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE---------------------------------------------- 105 (223)
T ss_pred HHhccccccccccCCcHHHHHHHHHHHHHhCCch----------------------------------------------
Confidence 87652110 0 011122234555566555532
Q ss_pred hhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 255 KSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 255 ~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.+..+..+|+|++|++.|+++++. +++++|+|||..|-+.
T Consensus 106 ---------------------------------~~~~~~~~LS~G~~qrv~laral~~------~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 106 ---------------------------------LADRPVGELSGGQRQRVLVARALAT------RPSVLLLDEPFTGLDM 146 (223)
T ss_pred ---------------------------------hhcCChhhCCHHHHHHHHHHHHHhc------CCCEEEEeCCcccCCH
Confidence 1122345689999999999999999 9999999999887665
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 335 NSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 335 ~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
.+.. .+.+++.+..+.++++++.+|+.+... .+..++.++
T Consensus 147 ~~~~-----------~l~~~l~~~~~~~~tvii~sH~~~~~~-~~~d~i~~l 186 (223)
T TIGR03771 147 PTQE-----------LLTELFIELAGAGTAILMTTHDLAQAM-ATCDRVVLL 186 (223)
T ss_pred HHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 5543 666667666555889999999987432 344555555
No 348
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.4e-16 Score=143.67 Aligned_cols=198 Identities=17% Similarity=0.175 Sum_probs=123.5
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccce--ecccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTV--IEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~--~~~~~~~ 146 (541)
.|.+.+.++++.|+...-.++|||.+ +|+|+|||||||||+||.+ .|+.|.|.|..-.|+... ......+
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 46789999999999999999999998 9999999999999999954 467888886554454211 1111111
Q ss_pred cccccccEEEEeCCCc--cccccccccCCCcccceeccccccch-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 147 VRGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFATLPEQV-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~~~~~~~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+..||||.|++. |-... +...|+.--.+..+. .-..+++.+..+++.+.+.-
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~V------SAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~--------------- 142 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQV------SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL--------------- 142 (258)
T ss_pred HHHhhhccceeecCccccceeee------ccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCc---------------
Confidence 1223446899998653 22111 222333211000000 00112222333333332210
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.-.+..+...|+|++|+
T Consensus 143 ---------------------------------------------------------------~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 143 ---------------------------------------------------------------DRIDDLPRTFSGGMQQR 159 (258)
T ss_pred ---------------------------------------------------------------ccccCcccccchHHHHH
Confidence 01234466789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
++|++.++. .|+|.+.|||+.|.++.... ++...+..... .+-.++|.+|++-+.
T Consensus 160 LQiARnLVt------~PrLvfMDEPTGGLDVSVQA-----------RLLDllrgLv~~l~la~viVTHDl~Va 215 (258)
T COG4107 160 LQIARNLVT------RPRLVFMDEPTGGLDVSVQA-----------RLLDLLRGLVRELGLAVVIVTHDLAVA 215 (258)
T ss_pred HHHHHHhcc------CCceEEecCCCCCcchhhHH-----------HHHHHHHHHHHhcCceEEEEechhHHH
Confidence 999999999 99999999998887765543 45555555433 356677888776543
No 349
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.63 E-value=1.4e-16 Score=144.72 Aligned_cols=183 Identities=18% Similarity=0.186 Sum_probs=127.4
Q ss_pred Cceeeeccccccccc---------ceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCcccee
Q psy91 78 DYIGFATLPEQVHRK---------SVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~---------~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~ 140 (541)
+.++++|+++.|..+ .+++.|||++ ||||.||||||||.++|+ ..|++|+|. ++|+
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il---~n~~---- 75 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEIL---INDH---- 75 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEE---ECCc----
Confidence 456788888888543 3889999998 999999999999999994 478899999 8888
Q ss_pred cccccccccccccEEEEeCCCc--cccccccccCCCcccceecc-ccccchhhHhHhhhHHHHHHHhCCCCccchhhhhh
Q psy91 141 EVAGTKVRGRQYPWGVVEGSTV--LTPSLIGSLFQTDRDYIGFA-TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNS 217 (541)
Q Consensus 141 ~~~~~~~~~~~~~~g~V~Q~~~--l~~~lig~~~qtv~e~l~~~-~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~ 217 (541)
.+.......+.+.+-++|||++ +.|.+ .+..-+..+ ++...+......+++-+.|..+||-.
T Consensus 76 ~L~~~Dy~~R~k~IRMiFQDpnts~NPRl------~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~P--------- 140 (267)
T COG4167 76 PLHFGDYSFRSKRIRMIFQDPNTSLNPRL------RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP--------- 140 (267)
T ss_pred cccccchHhhhhheeeeecCCccccChhh------hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCc---------
Confidence 3333334456678999999974 55666 555555544 22234445556667777788877732
Q ss_pred hccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCC
Q psy91 218 LFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 297 (541)
Q Consensus 218 l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls 297 (541)
-...-++.-++
T Consensus 141 ---------------------------------------------------------------------dhan~~~~~la 151 (267)
T COG4167 141 ---------------------------------------------------------------------DHANYYPHMLA 151 (267)
T ss_pred ---------------------------------------------------------------------cccccchhhcC
Confidence 01112344567
Q ss_pred CCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeecc
Q psy91 298 DRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEK 369 (541)
Q Consensus 298 ~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~ 369 (541)
.+++|+|+++++++. +|+++|.|+. |..|..-. .|+.+.+-+.+ +.+.+.+.+.
T Consensus 152 ~~QKQRVaLARALIL------~P~iIIaDeAl~~LD~smr------------sQl~NL~LeLQek~GiSyiYV~ 207 (267)
T COG4167 152 PGQKQRVALARALIL------RPKIIIADEALASLDMSMR------------SQLINLMLELQEKQGISYIYVT 207 (267)
T ss_pred chhHHHHHHHHHHhc------CCcEEEehhhhhhccHHHH------------HHHHHHHHHHHHHhCceEEEEe
Confidence 899999999999998 9999999998 66554333 25555544443 3455555444
No 350
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=3.4e-16 Score=152.48 Aligned_cols=162 Identities=20% Similarity=0.222 Sum_probs=120.8
Q ss_pred Cceeeecccccccc---------cceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCcccee
Q psy91 78 DYIGFATLPEQVHR---------KSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---------~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~ 140 (541)
..++++||++.|.. ..+++||||+| +|||+||||||||-|+| +..|+.|+|+ +.|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~---f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL---FEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE---EcCcchhh
Confidence 45778888888853 26899999999 99999999999999999 6678899999 88882100
Q ss_pred cccccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 141 EVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 141 ~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
+ + +.+..+++.++|+.+|+..
T Consensus 80 --------------------------~------~---------------~~~~~~~v~elL~~Vgl~~------------ 100 (268)
T COG4608 80 --------------------------L------S---------------KEERRERVLELLEKVGLPE------------ 100 (268)
T ss_pred --------------------------c------c---------------hhHHHHHHHHHHHHhCCCH------------
Confidence 1 1 3445567888888888643
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
.+..+++..+||||
T Consensus 101 ------------------------------------------------------------------~~~~ryPhelSGGQ 114 (268)
T COG4608 101 ------------------------------------------------------------------EFLYRYPHELSGGQ 114 (268)
T ss_pred ------------------------------------------------------------------HHhhcCCcccCchh
Confidence 02345678899999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGV 379 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l 379 (541)
.||+.|+++++. +|+++|+|||....++... .|+.++|.+.++. +-+.++.+|++.... .+
T Consensus 115 rQRi~IARALal------~P~liV~DEpvSaLDvSiq-----------aqIlnLL~dlq~~~~lt~lFIsHDL~vv~-~i 176 (268)
T COG4608 115 RQRIGIARALAL------NPKLIVADEPVSALDVSVQ-----------AQILNLLKDLQEELGLTYLFISHDLSVVR-YI 176 (268)
T ss_pred hhhHHHHHHHhh------CCcEEEecCchhhcchhHH-----------HHHHHHHHHHHHHhCCeEEEEEEEHHhhh-hh
Confidence 999999999998 9999999999665444333 3777777777654 778888898877543 34
Q ss_pred cceeEE
Q psy91 380 KLRLTV 385 (541)
Q Consensus 380 ~~rvnv 385 (541)
+.++-|
T Consensus 177 sdri~V 182 (268)
T COG4608 177 SDRIAV 182 (268)
T ss_pred cccEEE
Confidence 445443
No 351
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=4.1e-17 Score=157.14 Aligned_cols=184 Identities=19% Similarity=0.271 Sum_probs=129.1
Q ss_pred ceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccccccEEEEeC-CCcc
Q psy91 93 SVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG-STVL 163 (541)
Q Consensus 93 ~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q-~~~l 163 (541)
.+++||||+| +++|||||||||+|++|. ..|++|.|. ++|.+- . ...+..-+.+++|+. -..+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~---V~G~~P---f--~~~~~~~~~~~~v~gqk~ql 109 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR---VNGKDP---F--RRREEYLRSIGLVMGQKLQL 109 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE---ecCcCc---c--hhHHHHHHHHHHHhhhhhee
Confidence 4899999999 999999999999999994 467889999 888721 1 111223345666653 3334
Q ss_pred ccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCe
Q psy91 164 TPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDI 243 (541)
Q Consensus 164 ~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~v 243 (541)
.-.+ .+.+.+...+.-+.++..+-.++.+.+.+.+++.+.
T Consensus 110 ~Wdl------p~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~---------------------------------- 149 (325)
T COG4586 110 WWDL------PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGF---------------------------------- 149 (325)
T ss_pred eeec------hhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhh----------------------------------
Confidence 3334 344444433333445556666666666666666541
Q ss_pred eEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEE
Q psy91 244 GFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLT 323 (541)
Q Consensus 244 G~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~ 323 (541)
...+...+|-|++.++.++.++.. +|+++
T Consensus 150 ---------------------------------------------lk~~vr~LSlGqRmraeLaaaLLh------~p~VL 178 (325)
T COG4586 150 ---------------------------------------------LKWPVRKLSLGQRMRAELAAALLH------PPKVL 178 (325)
T ss_pred ---------------------------------------------hhhhhhhccchHHHHHHHHHHhcC------CCcEE
Confidence 112344578899999999999999 99999
Q ss_pred EEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 324 VVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 324 I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++|||+.|.+++... .++++++++++. +-|+...+|.++=. ..++.+|..|+
T Consensus 179 fLDEpTvgLDV~aq~-----------~ir~Flke~n~~~~aTVllTTH~~~di-~~lc~rv~~I~ 231 (325)
T COG4586 179 FLDEPTVGLDVNAQA-----------NIREFLKEYNEERQATVLLTTHIFDDI-ATLCDRVLLID 231 (325)
T ss_pred EecCCccCcchhHHH-----------HHHHHHHHHHHhhCceEEEEecchhhH-HHhhhheEEee
Confidence 999999999988765 788889888765 55777888887622 34777888875
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=99.63 E-value=2.5e-16 Score=177.08 Aligned_cols=182 Identities=15% Similarity=0.107 Sum_probs=118.4
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+.+++|++.|++ +.+|+++||+| +|+|||||||||||++|+|. +.+|+|. +.+.
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~---~~~~------------ 571 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF---RSAK------------ 571 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEE---ECCc------------
Confidence 57999999999964 56999999999 99999999999999999654 5667776 4321
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+||++|+.. ..+ ++.++..+... ..... ...+.+..++..+|+.
T Consensus 572 ---~~igyv~Q~~~--~~l------~~~~~~~~~~~-~~~~~-~~~~~i~~~L~~~gl~--------------------- 617 (718)
T PLN03073 572 ---VRMAVFSQHHV--DGL------DLSSNPLLYMM-RCFPG-VPEQKLRAHLGSFGVT--------------------- 617 (718)
T ss_pred ---eeEEEEecccc--ccC------CcchhHHHHHH-HhcCC-CCHHHHHHHHHHCCCC---------------------
Confidence 25899999742 233 34333211100 00000 0011222333333332
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
....++.+..+|+|++|++.|++
T Consensus 618 ---------------------------------------------------------~~~~~~~~~~LSgGqkqRvaLAr 640 (718)
T PLN03073 618 ---------------------------------------------------------GNLALQPMYTLSGGQKSRVAFAK 640 (718)
T ss_pred ---------------------------------------------------------hHHhcCCccccCHHHHHHHHHHH
Confidence 11223456779999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||+.|.+..+.. .+.+.|.+. +.++++.+|+.+... .++.++.++
T Consensus 641 aL~~------~p~lLLLDEPT~~LD~~s~~-----------~l~~~L~~~---~gtvIivSHd~~~i~-~~~drv~~l 697 (718)
T PLN03073 641 ITFK------KPHILLLDEPSNHLDLDAVE-----------ALIQGLVLF---QGGVLMVSHDEHLIS-GSVDELWVV 697 (718)
T ss_pred HHhc------CCCEEEEcCCCCCCCHHHHH-----------HHHHHHHHc---CCEEEEEECCHHHHH-HhCCEEEEE
Confidence 9998 99999999998887765442 333444332 238899999987554 355566655
No 353
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.63 E-value=2.4e-16 Score=170.16 Aligned_cols=203 Identities=18% Similarity=0.167 Sum_probs=129.1
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.+.+++++|+++.+|+++|+++ ||||+|||||||||++|+|. +++|+|. ..+
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~---~~~--------------- 64 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT---RPK--------------- 64 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe---ecC---------------
Confidence 578999999999999999999999 99999999999999999664 4455554 222
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCC-CccchhhhhhhccccccCCCCc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGES-GLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~-g~~ks~l~~~l~gl~~~~~~~i 229 (541)
...++|+.|+..+.+.. ||.+.+..+... -.+..+..+.+...++-. ...-..+...+..++.+.
T Consensus 65 ~~~v~~l~Q~~~~~~~~------tv~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 130 (530)
T COG0488 65 GLRVGYLSQEPPLDPEK------TVLDYVIEGFGE----LRELLAELEEAYALLADPDDELLAELEALLEELDGWT---- 130 (530)
T ss_pred CceEEEeCCCCCcCCCc------cHHHHHHhhhHH----HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccc----
Confidence 13589999999999888 999888766211 111111111221111111 000011111111111000
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
....-.+.+..|..... +.....+|||++.++.++++
T Consensus 131 -----------------------------------------~e~~~~~~L~gLg~~~~--~~~~~~LSGG~r~Rv~LA~a 167 (530)
T COG0488 131 -----------------------------------------LEARAEEALLGLGFPDE--DRPVSSLSGGWRRRVALARA 167 (530)
T ss_pred -----------------------------------------hHHHHHHHHhcCCCCcc--cCchhhcCHHHHHHHHHHHH
Confidence 00011234444444432 66788999999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++. +|.++++|||+...++..-. -+++||... .+ ++++++|+-.+-.
T Consensus 168 L~~------~pDlLLLDEPTNHLD~~~i~-----------WLe~~L~~~--~g-tviiVSHDR~FLd 214 (530)
T COG0488 168 LLE------EPDLLLLDEPTNHLDLESIE-----------WLEDYLKRY--PG-TVIVVSHDRYFLD 214 (530)
T ss_pred Hhc------CCCEEEEcCCCcccCHHHHH-----------HHHHHHHhC--CC-cEEEEeCCHHHHH
Confidence 999 99999999997655544432 334455422 23 8999999977655
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=99.62 E-value=1.1e-16 Score=179.88 Aligned_cols=218 Identities=11% Similarity=0.062 Sum_probs=125.0
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc-----CCCCCCeeecccCCcccee-ccc-
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-----SDLYGDRKVPNVNGSNTVI-EVA- 143 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-----~~~~G~i~~~~~~G~~~~~-~~~- 143 (541)
...|.++|++++|+++.+|+++||+| ||||||||||||||++|++ .+..|+|. +.++.... ...
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~---~~~Q~~~g~~~t~ 251 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL---HVEQEVVGDDTTA 251 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE---EEeccCCCCCCCH
Confidence 34699999999999889999999999 9999999999999999975 33445554 21110000 000
Q ss_pred -----c---cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCc--cchh
Q psy91 144 -----G---TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGL--GKST 213 (541)
Q Consensus 144 -----~---~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~--~ks~ 213 (541)
. .........+++++|...+... ++.++.... .....+..+..+++..+++.+++.+. +...
T Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-------~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFE-------TETGKGKGA-NKDGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-------ccccccccc-cccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 0 0000011123334443222110 111111111 11111223334445555555554331 0111
Q ss_pred hhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCC
Q psy91 214 LVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 293 (541)
Q Consensus 214 l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~ 293 (541)
+ ..++..|.......++.+
T Consensus 324 ~-------------------------------------------------------------~~~L~~lgl~~~~~~~~~ 342 (718)
T PLN03073 324 A-------------------------------------------------------------ASILAGLSFTPEMQVKAT 342 (718)
T ss_pred H-------------------------------------------------------------HHHHHHCCCChHHHhCch
Confidence 1 123333333221234567
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
..+|+|+++++.|+++++. +|+++|+|||+.+.+..... .+.++|.+. +.++++.+|+.+
T Consensus 343 ~~LSgG~k~rv~LA~aL~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~L~~~---~~tviivsHd~~ 402 (718)
T PLN03073 343 KTFSGGWRMRIALARALFI------EPDLLLLDEPTNHLDLHAVL-----------WLETYLLKW---PKTFIVVSHARE 402 (718)
T ss_pred hhCCHHHHHHHHHHHHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHc---CCEEEEEECCHH
Confidence 7899999999999999998 99999999997776655443 444555443 568999999977
Q ss_pred hhhhcccceeEEEc
Q psy91 374 IEERGVKLRLTVVD 387 (541)
Q Consensus 374 i~~~~l~~rvnvIp 387 (541)
... .++.++.++.
T Consensus 403 ~l~-~~~d~i~~l~ 415 (718)
T PLN03073 403 FLN-TVVTDILHLH 415 (718)
T ss_pred HHH-HhCCEEEEEE
Confidence 543 3555555554
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.62 E-value=4.2e-16 Score=174.53 Aligned_cols=213 Identities=13% Similarity=0.083 Sum_probs=120.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| ||+|||||||||||++|+|. +++|+|. +.|..
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~---~~~~~------------- 66 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII---YEQDL------------- 66 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE---eCCCC-------------
Confidence 478999999999999999999999 99999999999999999664 5678877 55430
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhh---hhhccccccCCC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLV---NSLFLSDLYGDR 227 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~---~~l~gl~~~~~~ 227 (541)
.+++++|...... .+ ++.+++..+. . ... ........+...++... ....+. .....+.....
T Consensus 67 --~~~~l~q~~~~~~--~~----~v~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~- 132 (635)
T PRK11147 67 --IVARLQQDPPRNV--EG----TVYDFVAEGI-E-EQA--EYLKRYHDISHLVETDP-SEKNLNELAKLQEQLDHHNL- 132 (635)
T ss_pred --EEEEeccCCCCCC--CC----CHHHHHHHhh-H-HHH--HHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHhcCc-
Confidence 2456666432211 22 3333222110 0 000 00000000001111100 000000 00000000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+ .. ... -..++..|... .++.+..+|+|+++++.|+
T Consensus 133 -----------------~-----~~-~~~------------------~~~~l~~lgl~---~~~~~~~LSgGekqRv~LA 168 (635)
T PRK11147 133 -----------------W-----QL-ENR------------------INEVLAQLGLD---PDAALSSLSGGWLRKAALG 168 (635)
T ss_pred -----------------c-----cH-HHH------------------HHHHHHhCCCC---CCCchhhcCHHHHHHHHHH
Confidence 0 00 000 01233333322 2567788999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||+.+.+..... .+.++|.+. ..++++++|+.++.. .++.++.++
T Consensus 169 raL~~------~P~lLLLDEPt~~LD~~~~~-----------~L~~~L~~~---~~tvlivsHd~~~l~-~~~d~i~~L 226 (635)
T PRK11147 169 RALVS------NPDVLLLDEPTNHLDIETIE-----------WLEGFLKTF---QGSIIFISHDRSFIR-NMATRIVDL 226 (635)
T ss_pred HHHhc------CCCEEEEcCCCCccCHHHHH-----------HHHHHHHhC---CCEEEEEeCCHHHHH-HhcCeEEEE
Confidence 99998 99999999998887665543 455555544 248889999977654 344455554
No 356
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.60 E-value=6.3e-16 Score=140.44 Aligned_cols=50 Identities=28% Similarity=0.298 Sum_probs=43.7
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
+.++++++.|++..+|+++||++ +|+||||||||||+++|++ .+.+|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEE
Confidence 46789999998888999999999 9999999999999999955 45677777
No 357
>PLN03232 ABC transporter C family member; Provisional
Probab=99.59 E-value=1.2e-15 Score=184.60 Aligned_cols=191 Identities=17% Similarity=0.165 Sum_probs=127.9
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|+++|+++.|+. +++|+|+||+| ||+||||||||||+++|++...+ ..|...
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-------~~G~i~---------- 675 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-------AETSSV---------- 675 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-------cCCCEE----------
Confidence 36899999999974 57999999999 99999999999999999775443 334311
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..+..++||+|++.++. - |++||+.|+. + . ..++...+++.+++..- +..+ + ++.
T Consensus 676 ~~~~~Iayv~Q~p~Lf~-g------TIreNI~fg~-~--~----~~e~~~~vl~~~~L~~d--------i~~L--p-~Gd 730 (1495)
T PLN03232 676 VIRGSVAYVPQVSWIFN-A------TVRENILFGS-D--F----ESERYWRAIDVTALQHD--------LDLL--P-GRD 730 (1495)
T ss_pred EecCcEEEEcCcccccc-c------cHHHHhhcCC-c--c----CHHHHHHHHHHhCCHHH--------HHhC--C-CCC
Confidence 23457999999999884 3 8999999983 2 1 12345556666655431 1101 0 000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
. -.+|+.| ..+||||+||++|+|
T Consensus 731 ---------------------------------~---T~IGe~G---------------------~~LSGGQkQRIaLAR 753 (1495)
T PLN03232 731 ---------------------------------L---TEIGERG---------------------VNISGGQKQRVSMAR 753 (1495)
T ss_pred ---------------------------------C---ceecCCC---------------------cccCHHHHHHHHHHH
Confidence 0 0123333 248999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhh-hhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQF-RQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~-~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+. +++++|+|+|..+-+..+.. ++ .+.+.. ...++|+++.+|.+.... ...++.+++
T Consensus 754 Aly~------~~~IlLLDEptSaLD~~t~~-----------~I~~~~l~~-~l~~kT~IlvTH~~~~l~--~aD~Ii~L~ 813 (1495)
T PLN03232 754 AVYS------NSDIYIFDDPLSALDAHVAH-----------QVFDSCMKD-ELKGKTRVLVTNQLHFLP--LMDRIILVS 813 (1495)
T ss_pred HHhc------CCCEEEEcCCccccCHHHHH-----------HHHHHHhhh-hhcCCEEEEEECChhhHH--hCCEEEEEe
Confidence 9999 99999999996654443332 22 222322 225789999999875432 344555553
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.59 E-value=1.4e-15 Score=142.50 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=59.6
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCee--eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVK--LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~--~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
.+..+|+|++|++.|+++++. + ++++|+|||..|-+..... .+.+++.+..+.++++++.+
T Consensus 84 ~~~~LSgGq~qrl~laral~~------~~~p~llLlDEPt~~LD~~~~~-----------~l~~~l~~~~~~g~tvIivS 146 (176)
T cd03238 84 KLSTLSGGELQRVKLASELFS------EPPGTLFILDEPSTGLHQQDIN-----------QLLEVIKGLIDLGNTVILIE 146 (176)
T ss_pred CcCcCCHHHHHHHHHHHHHhh------CCCCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEe
Confidence 455789999999999999988 8 9999999998876655443 66677766655688999999
Q ss_pred ccchhhhhcccceeEEE
Q psy91 370 KSMDIEERGVKLRLTVV 386 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvI 386 (541)
|+.+.. ....++.++
T Consensus 147 H~~~~~--~~~d~i~~l 161 (176)
T cd03238 147 HNLDVL--SSADWIIDF 161 (176)
T ss_pred CCHHHH--HhCCEEEEE
Confidence 998864 346666666
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=99.58 E-value=6.2e-16 Score=170.79 Aligned_cols=191 Identities=13% Similarity=0.107 Sum_probs=123.6
Q ss_pred ccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecc--------cCCccceecccccc
Q psy91 84 TLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPN--------VNGSNTVIEVAGTK 146 (541)
Q Consensus 84 ~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~--------~~G~~~~~~~~~~~ 146 (541)
+++++||.. .+|++++ .+ ||+|||||||||||++|+| .|+.|+|.... +.|+.+.... ..
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~--~~ 154 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF--KK 154 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH--HH
Confidence 378899874 5999999 66 9999999999999999965 46778874100 3454221000 00
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.......+++++|.....|.+ +.-||.+++.+. .....+.++++.+|+..
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~---~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~------------------ 204 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKV---FKGKVRELLKKV---------DERGKLDEVVERLGLEN------------------ 204 (590)
T ss_pred HhccCcceeecccchhhhhhh---hcchHHHHHHhh---------hHHHHHHHHHHHcCCch------------------
Confidence 011112345556654443322 111566655421 12234455555555432
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
..++.+..+|+|++|+++|
T Consensus 205 -------------------------------------------------------------~~~~~~~~LSgGe~qrv~i 223 (590)
T PRK13409 205 -------------------------------------------------------------ILDRDISELSGGELQRVAI 223 (590)
T ss_pred -------------------------------------------------------------hhcCChhhCCHHHHHHHHH
Confidence 2344566799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||+.+.+..... ++.+++.+..+ +.++++.+|+++... .+..++.++
T Consensus 224 a~al~~------~p~lllLDEPts~LD~~~~~-----------~l~~~i~~l~~-g~tvIivsHd~~~l~-~~~D~v~vl 284 (590)
T PRK13409 224 AAALLR------DADFYFFDEPTSYLDIRQRL-----------NVARLIRELAE-GKYVLVVEHDLAVLD-YLADNVHIA 284 (590)
T ss_pred HHHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHC-CCEEEEEeCCHHHHH-HhCCEEEEE
Confidence 999998 99999999997776655443 66777777766 889999999988654 456666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 285 ~ 285 (590)
T PRK13409 285 Y 285 (590)
T ss_pred e
Confidence 3
No 360
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.58 E-value=1.2e-16 Score=143.53 Aligned_cols=128 Identities=20% Similarity=0.301 Sum_probs=95.8
Q ss_pred eecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccccccEEEEeCCCccccc
Q psy91 95 KKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPS 166 (541)
Q Consensus 95 L~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~ 166 (541)
|++||++| +|+|||||||||||++|++. +..|.|. ++|. .+........+..++|++|+..+++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~---~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~ 73 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSIL---INGK----DISDIDIEELRRRIGYVPQDPQLFPG 73 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEE---ETTE----EGTTSHHHHHHHTEEEEESSHCHHTT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccc---cccc----cccccccccccccccccccccccccc
Confidence 68999999 99999999999999999654 4679998 7877 33332333456789999999999998
Q ss_pred cccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEe
Q psy91 167 LIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFA 246 (541)
Q Consensus 167 lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~ 246 (541)
+ |+.++ ....++..++..+++.+..+.
T Consensus 74 ~------tv~~~-------------~~~~~~~~~l~~l~~~~~~~~---------------------------------- 100 (137)
T PF00005_consen 74 L------TVREN-------------ESDERIEEVLKKLGLEDLLDR---------------------------------- 100 (137)
T ss_dssp S------BHHHH-------------HHHHHHHHHHHHTTHGGGTGS----------------------------------
T ss_pred c------ccccc-------------ccccccccccccccccccccc----------------------------------
Confidence 8 88887 223345566666665441111
Q ss_pred eccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEc
Q psy91 247 TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVD 326 (541)
Q Consensus 247 ~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~D 326 (541)
..+.....+|+|++|++.|+++++. +++++|+|
T Consensus 101 -----------------------------------------~~~~~~~~LS~Ge~~rl~la~al~~------~~~llllD 133 (137)
T PF00005_consen 101 -----------------------------------------KIGQRASSLSGGEKQRLALARALLK------NPKLLLLD 133 (137)
T ss_dssp -----------------------------------------BGTSCGGGSCHHHHHHHHHHHHHHT------TSSEEEEE
T ss_pred -----------------------------------------ccccccchhhHHHHHHHHHHHHHHc------CCCEEEEe
Confidence 0112235689999999999999988 99999999
Q ss_pred CCC
Q psy91 327 TPG 329 (541)
Q Consensus 327 ePg 329 (541)
||.
T Consensus 134 EPt 136 (137)
T PF00005_consen 134 EPT 136 (137)
T ss_dssp STT
T ss_pred CCC
Confidence 996
No 361
>PLN03130 ABC transporter C family member; Provisional
Probab=99.57 E-value=2.3e-15 Score=182.61 Aligned_cols=190 Identities=17% Similarity=0.190 Sum_probs=127.0
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccC-Cccceeccccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN-GSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~-G~~~~~~~~~~~~ 147 (541)
+.|.++|+++.|+. +++|+|+||+| ||+|||||||||||++|+|...+ .. |.+.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-------~~GG~I~--------- 676 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-------RSDASVV--------- 676 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-------CCCceEE---------
Confidence 46999999999974 56999999999 99999999999999999765433 33 3311
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
.+..++||+|++.++. - |++||+.|+. + . ..++...+++.+++... +..+ + ++
T Consensus 677 --l~~~Iayv~Q~p~Lfn-g------TIreNI~fg~-~--~----d~e~y~~vl~a~~L~~d--------i~~L--P-~G 729 (1622)
T PLN03130 677 --IRGTVAYVPQVSWIFN-A------TVRDNILFGS-P--F----DPERYERAIDVTALQHD--------LDLL--P-GG 729 (1622)
T ss_pred --EcCeEEEEcCccccCC-C------CHHHHHhCCC-c--c----cHHHHHHHHHHhCcHHH--------HHhC--C-Cc
Confidence 1346899999999884 3 8999999983 1 1 13345666777766431 1111 0 00
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.- -.+|+.| ..+||||+||++|+
T Consensus 730 d~------------------------------------T~IGe~G---------------------~~LSGGQKQRIaLA 752 (1622)
T PLN03130 730 DL------------------------------------TEIGERG---------------------VNISGGQKQRVSMA 752 (1622)
T ss_pred cc------------------------------------ccccCCC---------------------CCCCHHHHHHHHHH
Confidence 00 0123322 35899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
|+.+. +++++|+|+|..+-+..... . -|.+.+... ..++|+++.+|.+.... ...++.++
T Consensus 753 RAly~------~~~IlLLDEptSALD~~~~~-------~---I~~~~l~~~-l~~kTvIlVTH~l~~l~--~aD~Ii~L 812 (1622)
T PLN03130 753 RAVYS------NSDVYIFDDPLSALDAHVGR-------Q---VFDKCIKDE-LRGKTRVLVTNQLHFLS--QVDRIILV 812 (1622)
T ss_pred HHHhC------CCCEEEECCCccccCHHHHH-------H---HHHHHhhHH-hcCCEEEEEECCHhHHH--hCCEEEEE
Confidence 99999 99999999996654443331 0 122233222 24789999999876433 23445444
No 362
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.57 E-value=1.5e-15 Score=142.43 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=54.2
Q ss_pred CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccC-cceeeccccchh
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG-KTTTIEKKSMDI 374 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~-rt~~i~~~~~di 374 (541)
+|+|++|++.|+++++. +++++++|||..|-+..+.. .+.+.+.+..+.+ .++++.+|+.+.
T Consensus 72 LSgGq~qrv~laral~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 72 LSGGELQRVAIAAALLR------NATFYLFDEPSAYLDIEQRL-----------NAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred CCHHHHHHHHHHHHHhc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 67888999999999988 99999999998776655443 5566666654444 788999998775
Q ss_pred hhhcccceeEEEc
Q psy91 375 EERGVKLRLTVVD 387 (541)
Q Consensus 375 ~~~~l~~rvnvIp 387 (541)
.. .++.++.++.
T Consensus 135 ~~-~~~d~i~~l~ 146 (177)
T cd03222 135 LD-YLSDRIHVFE 146 (177)
T ss_pred HH-HhCCEEEEEc
Confidence 43 3455665553
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.7e-15 Score=139.61 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=44.5
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
++++++.|.++.+|++++++| +|+||||||||||+++|.+ .+..|+|+ ++|.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~---~~~~ 61 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL---IDGK 61 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE---ECCE
Confidence 567888898888999999999 9999999999999999955 45677787 6665
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=1.5e-15 Score=145.18 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=123.1
Q ss_pred cccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccccccccccEEEEeCCC
Q psy91 90 HRKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST 161 (541)
Q Consensus 90 ~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~ 161 (541)
....+|+||||++ +|||+|||||||||++| ...|++|+|. ++|++.. ... =..
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~---v~G~v~~---------li~-------lg~ 98 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK---VTGKVAP---------LIE-------LGA 98 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEE---EcceEeh---------hhh-------ccc
Confidence 3456999999999 99999999999999999 5578899999 8887211 011 012
Q ss_pred ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCC
Q psy91 162 VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYS 241 (541)
Q Consensus 162 ~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~ 241 (541)
.+.|.+ |.+||+.+-.+..++++++..+.+++.++.-.|..
T Consensus 99 Gf~pel------TGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~--------------------------------- 139 (249)
T COG1134 99 GFDPEL------TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGD--------------------------------- 139 (249)
T ss_pred CCCccc------chHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 344667 99999988655556778888888887776555433
Q ss_pred CeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 242 DIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 242 ~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
+.+.++...|.|+.-|+.++.+... +|+
T Consensus 140 ----------------------------------------------fi~~PvktYSSGM~aRLaFsia~~~------~pd 167 (249)
T COG1134 140 ----------------------------------------------FIDQPVKTYSSGMYARLAFSVATHV------EPD 167 (249)
T ss_pred ----------------------------------------------HhhCchhhccHHHHHHHHHhhhhhc------CCC
Confidence 1223344567777778877777766 999
Q ss_pred EEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 322 LTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 322 L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++|+||- +.||+.-...|.. .+.+..+.++++++++|+++.. ++++.++-++.
T Consensus 168 ILllDEvlavGD~~F~~K~~~------------rl~e~~~~~~tiv~VSHd~~~I-~~~Cd~~i~l~ 221 (249)
T COG1134 168 ILLLDEVLAVGDAAFQEKCLE------------RLNELVEKNKTIVLVSHDLGAI-KQYCDRAIWLE 221 (249)
T ss_pred EEEEehhhhcCCHHHHHHHHH------------HHHHHHHcCCEEEEEECCHHHH-HHhcCeeEEEe
Confidence 9999999 8998754443322 2334434568899999987744 34666666653
No 365
>KOG0059|consensus
Probab=99.55 E-value=1.9e-15 Score=174.32 Aligned_cols=191 Identities=16% Similarity=0.255 Sum_probs=147.8
Q ss_pred Cceeeecccccccccc-eeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHRKS-VKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~-iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
..+.++++++.|+.+. +++++++.| ++.|||||||||++++|.| .+++|+++ +.|.++....+ ..
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~---i~g~~i~~~~~---~~ 636 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEAL---IKGHDITVSTD---FQ 636 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEE---EecCccccccc---hh
Confidence 3567889999999877 999999999 9999999999999999954 67889999 77773322111 11
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
...+.+||.+|.+.+++.+ |.+|++.+-...++++..+..+.++.+++.+|+.+.+
T Consensus 637 ~~~~~iGyCPQ~d~l~~~l------T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~------------------ 692 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWEEL------TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYA------------------ 692 (885)
T ss_pred hhhhhcccCCchhhhhhhc------cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhh------------------
Confidence 2456799999999999999 9999998764455666667777788888888886522
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+......|+|++++++++.
T Consensus 693 -------------------------------------------------------------~~~~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 693 -------------------------------------------------------------NKQVRTYSGGNKRRLSFAI 711 (885)
T ss_pred -------------------------------------------------------------ccchhhCCCcchhhHHHHH
Confidence 2234457899999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
+++. +|.++++|||+.|-+..... ...+.+.+..+.++.++..+|.++-.+
T Consensus 712 alig------~p~vi~LDEPstGmDP~arr-----------~lW~ii~~~~k~g~aiiLTSHsMeE~E 762 (885)
T KOG0059|consen 712 ALIG------DPSVILLDEPSTGLDPKARR-----------HLWDIIARLRKNGKAIILTSHSMEEAE 762 (885)
T ss_pred HHhc------CCCEEEecCCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 9988 99999999998886644332 444555566666668889999988554
No 366
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.55 E-value=1.7e-15 Score=146.82 Aligned_cols=75 Identities=11% Similarity=0.047 Sum_probs=50.2
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKK 370 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~ 370 (541)
.+..+|+|++|+++|+++++. +++++|+||| ..+|..... .+.+.+.+..+ ++++++.+|
T Consensus 101 ~~~~lS~G~~qrv~la~al~~------~p~llllDEP~~~lD~~~~~------------~~~~~l~~~~~-~~~ii~vsH 161 (213)
T PRK15177 101 RVSEYSVTMKTHLAFAINLLL------PCRLYIADGKLYTGDNATQL------------RMQAALACQLQ-QKGLIVLTH 161 (213)
T ss_pred hHhhcCHHHHHHHHHHHHHhc------CCCEEEECCCCccCCHHHHH------------HHHHHHHHHhh-CCcEEEEEC
Confidence 345679999999999999998 9999999999 445443322 33333332222 356888899
Q ss_pred cchhhhhcccceeEEE
Q psy91 371 SMDIEERGVKLRLTVV 386 (541)
Q Consensus 371 ~~di~~~~l~~rvnvI 386 (541)
++.... .++.++.++
T Consensus 162 ~~~~~~-~~~d~i~~l 176 (213)
T PRK15177 162 NPRLIK-EHCHAFGVL 176 (213)
T ss_pred CHHHHH-HhcCeeEEE
Confidence 887543 245566555
No 367
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.54 E-value=4.7e-15 Score=179.88 Aligned_cols=188 Identities=16% Similarity=0.168 Sum_probs=125.4
Q ss_pred ceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.|.++|+++.|++ +++|+|+||+| +|+|||||||||||++|+|. +..|+|. ++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~---~~g------------- 699 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH---MKG------------- 699 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE---ECC-------------
Confidence 6999999999974 57999999999 99999999999999999664 5566666 443
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++||+|++.++ .. |++||+.|+.. .. . ++...+++.+++.. .+..+ + .+.
T Consensus 700 ----~i~yv~Q~~~l~-~~------Ti~eNI~~g~~---~~-~---~~~~~~~~~~~l~~--------~l~~~-~--~g~ 750 (1522)
T TIGR00957 700 ----SVAYVPQQAWIQ-ND------SLRENILFGKA---LN-E---KYYQQVLEACALLP--------DLEIL-P--SGD 750 (1522)
T ss_pred ----EEEEEcCCcccc-CC------cHHHHhhcCCc---cC-H---HHHHHHHHHhCCHH--------HHHhc-C--CCC
Confidence 389999998775 45 99999999831 11 1 12233333333321 00000 0 000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
- | ........+||||+||++|++
T Consensus 751 ~-----------------------------------------------t----------~ig~~g~~LSGGQkqRiaLAR 773 (1522)
T TIGR00957 751 R-----------------------------------------------T----------EIGEKGVNLSGGQKQRVSLAR 773 (1522)
T ss_pred C-----------------------------------------------c----------eecCCCCCCCHHHHHHHHHHH
Confidence 0 0 011224468999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhh--cccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE--NRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e--~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+.+. +++++++|||..+-+..... .+.+.+... ...++++++.+|+...... ..++.++
T Consensus 774 Al~~------~~~illLDEp~saLD~~~~~-----------~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~--~D~ii~l 834 (1522)
T TIGR00957 774 AVYS------NADIYLFDDPLSAVDAHVGK-----------HIFEHVIGPEGVLKNKTRILVTHGISYLPQ--VDVIIVM 834 (1522)
T ss_pred HHhc------CCCEEEEcCCccccCHHHHH-----------HHHHHHhhhhhhhcCCEEEEEeCChhhhhh--CCEEEEe
Confidence 9999 99999999997765544432 333333321 1246889999998765442 4555555
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 835 ~ 835 (1522)
T TIGR00957 835 S 835 (1522)
T ss_pred c
Confidence 3
No 368
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.51 E-value=1.3e-14 Score=175.45 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=120.0
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++++++. .+++|+|+||+| +|+|||||||||||++|+|. +..|+|. ++|
T Consensus 428 ~~~~~~~s~~--~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~---~~g--------------- 487 (1490)
T TIGR01271 428 GLFFSNFSLY--VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK---HSG--------------- 487 (1490)
T ss_pred cccccccccc--cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECC---------------
Confidence 4667776664 367999999999 99999999999999999664 5566666 444
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
.++||+|++.+++ . |++||+.|+. +. .. .+...++..+++.. .+..+. .+.-
T Consensus 488 --~iayv~Q~~~l~~-~------Ti~eNI~~g~-~~--~~----~~~~~~~~~~~L~~--------~l~~l~---~g~~- 539 (1490)
T TIGR01271 488 --RISFSPQTSWIMP-G------TIKDNIIFGL-SY--DE----YRYTSVIKACQLEE--------DIALFP---EKDK- 539 (1490)
T ss_pred --EEEEEeCCCccCC-c------cHHHHHHhcc-cc--ch----HHHHHHHHHHhHHH--------HHHhcc---cccc-
Confidence 3899999988875 5 9999999983 11 11 11222233333211 010000 0000
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
-.+| .....+|+|++||++|+++.
T Consensus 540 -----------------------------------t~vg---------------------~~g~~LSgGqkqRi~lARAl 563 (1490)
T TIGR01271 540 -----------------------------------TVLG---------------------EGGITLSGGQRARISLARAV 563 (1490)
T ss_pred -----------------------------------cccc---------------------CcCCCcCHHHHHHHHHHHHH
Confidence 0011 12346899999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhh-hhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQ-YFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~-~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|+|..+-+..... ++.+ .+.... .++|+++.+|++.... ...++.++.
T Consensus 564 ~~------~~~illLDep~saLD~~~~~-----------~i~~~~l~~~~-~~~tvilvtH~~~~~~--~ad~ii~l~ 621 (1490)
T TIGR01271 564 YK------DADLYLLDSPFTHLDVVTEK-----------EIFESCLCKLM-SNKTRILVTSKLEHLK--KADKILLLH 621 (1490)
T ss_pred Hc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHh-cCCeEEEEeCChHHHH--hCCEEEEEE
Confidence 99 99999999997765544432 2222 122222 3789999999987654 255666654
No 369
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=3.3e-15 Score=139.48 Aligned_cols=79 Identities=27% Similarity=0.371 Sum_probs=67.7
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCC-
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST- 161 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~- 161 (541)
.+++|+++|++| .|+|.|||||||||++|+| .+++|.|. ++|. +++..+...+...++-|||++
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~---Idg~----dVtk~~~~~RA~~larVfQdp~ 90 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL---IDGV----DVTKKSVAKRANLLARVFQDPL 90 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEE---ECce----ecccCCHHHHhhHHHHHhcchh
Confidence 367999999999 8999999999999999955 57899999 8888 666666666777788999996
Q ss_pred -ccccccccccCCCcccceecc
Q psy91 162 -VLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 162 -~l~~~lig~~~qtv~e~l~~~ 182 (541)
...+.+ |+.||+.++
T Consensus 91 ~gt~~~l------TieENl~la 106 (263)
T COG1101 91 AGTAPEL------TIEENLALA 106 (263)
T ss_pred hCCcccc------cHHHHHHHH
Confidence 568899 999999987
No 370
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.4e-15 Score=152.67 Aligned_cols=93 Identities=27% Similarity=0.410 Sum_probs=77.5
Q ss_pred CCceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.+.|.++++.|. .+++|+++||++ ||+||||+||||++++| .....+|.|. ++|+++ .....
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~---id~qdi----r~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDI----RDVTQ 332 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE---EcchhH----HHhHH
Confidence 45689999999996 467999999998 99999999999999999 7778899999 889843 33333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccc
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT 183 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~ 183 (541)
...++.+|.|+||..||.. |...|+.+++
T Consensus 333 ~slR~aIg~VPQDtvLFND-------ti~yni~ygr 361 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-------TIAYNIKYGR 361 (497)
T ss_pred HHHHHHhCcCcccceehhh-------hHHHHHhccC
Confidence 3456679999999999865 5788999984
No 371
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.47 E-value=4.1e-14 Score=140.66 Aligned_cols=208 Identities=9% Similarity=0.067 Sum_probs=125.5
Q ss_pred eeeecccccccccceeecceEEE-EEEcCCCCCHHHHHHHHhc--C-CCCCCeeecccCCc-cceecccccccccccccE
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL-MVVGESGLGKSTLVNSLFL--S-DLYGDRKVPNVNGS-NTVIEVAGTKVRGRQYPW 154 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i-aIiGpSGsGKSTLL~~L~~--~-~~~G~i~~~~~~G~-~~~~~~~~~~~~~~~~~~ 154 (541)
|.++|. +.|....++.+++-.+ +|+|||||||||||++|.+ . ...|+++ ..|. .++. . ..........+
T Consensus 6 ~~~~~f-~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r---~~~~~~li~-~-~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVR---ASNLQDLIY-K-RGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccccccccc---ccCHHHHhh-c-CCCCCCcEEEE
Confidence 455555 5666666665665556 9999999999999999932 2 2345777 5554 2211 0 11111234578
Q ss_pred EEEeCCC---------ccccccccccCCCcccceeccccccc-h-hhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 155 GVVEGST---------VLTPSLIGSLFQTDRDYIGFATLPEQ-V-HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 155 g~V~Q~~---------~l~~~lig~~~qtv~e~l~~~~~~~~-~-~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
++++|+. .+.|.+ +|.+++.++..... . .+....+.+..+++.+|+.-- .
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~l------tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~-------------~ 140 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEI------TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVN-------------N 140 (251)
T ss_pred EEEEEcCCcccCcccccCCceE------EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCC-------------C
Confidence 9999984 456677 89888876531111 1 122234567777888777410 0
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
..-++.|.. -+++++... ..+..+..+|+|++|+
T Consensus 141 ------------------~~~~i~Qg~------------------------v~~~~~~~~----~~~~~~~~lS~G~~qr 174 (251)
T cd03273 141 ------------------PHFLIMQGR------------------------ITKVLNMGG----VWKESLTELSGGQRSL 174 (251)
T ss_pred ------------------ceEEEeehH------------------------HHHHHHhHH----hhcccccccCHHHHHH
Confidence 000111110 123444432 3345677899999999
Q ss_pred eEEeeeEE----EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 304 TTIEKKSM----DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 304 v~I~~~~~----~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++|+++++ . +++++|+|||..|-+..... .+.++|.+.. .+.++++.+|..++..
T Consensus 175 ~~la~al~~~~~~------~~~illlDEPt~~ld~~~~~-----------~~~~~l~~~~-~g~~ii~iSH~~~~~~ 233 (251)
T cd03273 175 VALSLILALLLFK------PAPMYILDEVDAALDLSHTQ-----------NIGRMIKTHF-KGSQFIVVSLKEGMFN 233 (251)
T ss_pred HHHHHHHHHhhcc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHc-CCCEEEEEECCHHHHH
Confidence 99998764 3 57999999998776544432 4555555543 3678888999855544
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.45 E-value=8.9e-14 Score=150.38 Aligned_cols=183 Identities=21% Similarity=0.254 Sum_probs=122.8
Q ss_pred CCCceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccc
Q psy91 76 DRDYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
....+.++|+++.|++ +.+++++||.| ||+|||||||||||++|++. +.+|.|. + |.
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~---~-g~---------- 383 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK---V-GE---------- 383 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE---e-CC----------
Confidence 3568999999999966 68999999999 99999999999999999543 3456554 2 22
Q ss_pred cccccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 147 VRGRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.-.+||+.|+. .+.+.. |+.+.+.-. .+.. ....+...|..+|..+
T Consensus 384 ----~v~igyf~Q~~~~l~~~~------t~~d~l~~~-~~~~-----~e~~~r~~L~~f~F~~----------------- 430 (530)
T COG0488 384 ----TVKIGYFDQHRDELDPDK------TVLEELSEG-FPDG-----DEQEVRAYLGRFGFTG----------------- 430 (530)
T ss_pred ----ceEEEEEEehhhhcCccC------cHHHHHHhh-Cccc-----cHHHHHHHHHHcCCCh-----------------
Confidence 13589999986 334555 666655432 1000 0223334444444432
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+ ....++..+|||++.|+.
T Consensus 431 ------------------------------------------------------------~-~~~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 431 ------------------------------------------------------------E-DQEKPVGVLSGGEKARLL 449 (530)
T ss_pred ------------------------------------------------------------H-HHhCchhhcCHhHHHHHH
Confidence 1 113456679999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
++..+.. +++++|+|||+.-.++.... .+.+.|. .-.-++++++|+..+... +..++.+
T Consensus 450 La~ll~~------~pNvLiLDEPTNhLDi~s~~-----------aLe~aL~---~f~Gtvl~VSHDr~Fl~~-va~~i~~ 508 (530)
T COG0488 450 LAKLLLQ------PPNLLLLDEPTNHLDIESLE-----------ALEEALL---DFEGTVLLVSHDRYFLDR-VATRIWL 508 (530)
T ss_pred HHHHhcc------CCCEEEEcCCCccCCHHHHH-----------HHHHHHH---hCCCeEEEEeCCHHHHHh-hcceEEE
Confidence 9999988 99999999996655554432 3333333 235578899999876654 4455555
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 509 ~~ 510 (530)
T COG0488 509 VE 510 (530)
T ss_pred Ec
Confidence 53
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.45 E-value=6.6e-14 Score=169.75 Aligned_cols=179 Identities=18% Similarity=0.148 Sum_probs=114.3
Q ss_pred ccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCC--CCCCeeecccCCccceecccccccccccccEEEEe
Q psy91 87 EQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSD--LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 87 ~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~--~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
+.++++.+|+++||+| +|+|||||||||||++|+|.. ..|+|. + ...++||+
T Consensus 668 ~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~---~-----------------~~~i~yv~ 727 (1560)
T PTZ00243 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW---A-----------------ERSIAYVP 727 (1560)
T ss_pred cccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---E-----------------CCeEEEEe
Confidence 4456678999999999 999999999999999997653 344443 1 13589999
Q ss_pred CCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCC
Q psy91 159 GSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSI 238 (541)
Q Consensus 159 Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~ 238 (541)
|++.++ .. |++||+.|+.. . ..++...++...++.. .+..+
T Consensus 728 Q~~~l~-~~------Tv~enI~~~~~-~------~~~~~~~~~~~~~l~~--------~l~~l----------------- 768 (1560)
T PTZ00243 728 QQAWIM-NA------TVRGNILFFDE-E------DAARLADAVRVSQLEA--------DLAQL----------------- 768 (1560)
T ss_pred CCCccC-CC------cHHHHHHcCCh-h------hHHHHHHHHHHhhhHH--------HHHHh-----------------
Confidence 998876 46 99999998621 0 1112233333333221 00000
Q ss_pred CCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCe
Q psy91 239 PYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV 318 (541)
Q Consensus 239 ~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv 318 (541)
.+| -.| ........+|+|++|+++|+++++.
T Consensus 769 -------------------~~g--------------~~t----------~i~~~g~~LSGGQkqRvaLARAl~~------ 799 (1560)
T PTZ00243 769 -------------------GGG--------------LET----------EIGEKGVNLSGGQKARVSLARAVYA------ 799 (1560)
T ss_pred -------------------hcc--------------chH----------HhcCCCCCCCHHHHHHHHHHHHHhc------
Confidence 000 000 0122355799999999999999999
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhh-hhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQF-RQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~-~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++++|+|||..+-+..... .+ ...+... ..++++++.+|+.+... ...++.++.
T Consensus 800 ~p~illLDEP~saLD~~~~~-----------~i~~~~~~~~-~~~~TvIlvTH~~~~~~--~ad~ii~l~ 855 (1560)
T PTZ00243 800 NRDVYLLDDPLSALDAHVGE-----------RVVEECFLGA-LAGKTRVLATHQVHVVP--RADYVVALG 855 (1560)
T ss_pred CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHh-hCCCEEEEEeCCHHHHH--hCCEEEEEE
Confidence 99999999996665433221 11 1222111 13789999999887654 355666654
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.40 E-value=4.3e-13 Score=121.44 Aligned_cols=182 Identities=12% Similarity=0.124 Sum_probs=119.0
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc-CCCCCCeeecccCCccceecccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
+.+++|+... -|-.+|+.+ -+||||||||||||-.++| .+.+|+|. +.|. .+.........+
T Consensus 4 ~qln~v~~~t----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~---~~G~----~l~~~~~~eLAr 72 (248)
T COG4138 4 MQLNDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQ---FAGQ----PLEAWSATELAR 72 (248)
T ss_pred eeeccccccc----cccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEE---ECCc----chhHHhHhHHHH
Confidence 3445554432 244555555 7999999999999999966 46689999 8888 333333344555
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
..+|+.|+..-...+ .|...+.+. . +.++....++.+...+++.
T Consensus 73 hRAYLsQqq~p~f~m------pV~~YL~L~-q----P~~~~a~~i~~i~~~L~l~------------------------- 116 (248)
T COG4138 73 HRAYLSQQQTPPFAM------PVWHYLTLH-Q----PDKTRTELLNDVAGALALD------------------------- 116 (248)
T ss_pred HHHHHhhccCCcchh------hhhhhhhhc-C----chHHHHHHHHHHHhhhccc-------------------------
Confidence 668888875544444 555555543 1 2222222333333333332
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
+ ...+....+|||+=|+|.++.....
T Consensus 117 -----------------------------------------------------D-KL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 117 -----------------------------------------------------D-KLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred -----------------------------------------------------c-hhhhhhhhcCcccceeeEEeEEEEE
Confidence 2 2234456789999999999988877
Q ss_pred eee-cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 313 IEE-RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 313 i~e-~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
+.- -+-.-+|+++|||-.+.++.... .+...|.+..+.++++++..|++.
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~-----------aLdrll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQS-----------ALDRLLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHH-----------HHHHHHHHHHhCCcEEEEeccchh
Confidence 643 34456899999998877665543 566777888899999999998875
No 375
>KOG0054|consensus
Probab=99.38 E-value=2.7e-13 Score=157.88 Aligned_cols=160 Identities=20% Similarity=0.207 Sum_probs=116.9
Q ss_pred CCceeeeccccccccc--ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVHRK--SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~--~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.|+|+|++.+|... .||+||||+| ||||+.|||||||+.+| +..+..|.|. ++|. ++..-.
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~---IDgv----dI~~ig 1208 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL---IDGV----DISKIG 1208 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE---EcCe----eccccc
Confidence 4579999999999765 6999999999 99999999999999999 6667889999 8887 444444
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....|.+++.++|++.|| .| |+|.|+.=- ...+. +.+-++|+.++|...-.+.. .+++..
T Consensus 1209 L~dLRsrlsIIPQdPvLF---sG----TvR~NLDPf---~e~sD----~~IW~ALe~~~Lk~~v~~~p----~~Ld~~-- 1268 (1381)
T KOG0054|consen 1209 LHDLRSRLSIIPQDPVLF---SG----TVRFNLDPF---DEYSD----DEIWEALERCQLKDVVSSLP----GGLDSE-- 1268 (1381)
T ss_pred HHHHHhcCeeeCCCCcee---cC----ccccccCcc---cccCH----HHHHHHHHHhChHHHHhhCC----cCCCce--
Confidence 556778899999999999 66 899988621 11222 33445666666643211100 001100
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+. ..-.+.|-||+|-+++
T Consensus 1269 -----------------------------------------v~---------------------egG~N~SvGQRQLlCL 1286 (1381)
T KOG0054|consen 1269 -----------------------------------------VS---------------------EGGENFSVGQRQLLCL 1286 (1381)
T ss_pred -----------------------------------------ec---------------------CCCccCChHHHHHHHH
Confidence 00 1123468899999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+|++.. +-+++|+||.+..
T Consensus 1287 ARALLr------~skILvLDEATAs 1305 (1381)
T KOG0054|consen 1287 ARALLR------KSKILVLDEATAS 1305 (1381)
T ss_pred HHHHhc------cCCEEEEeccccc
Confidence 999999 9999999999764
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.36 E-value=5e-14 Score=136.27 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=57.8
Q ss_pred eeeecccccccccceeecceEEE-EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEe
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL-MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i-aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~ 158 (541)
+.++|.. +|++..+|+++++.+ +|+|||||||||||++|. + +.|.. .. ..+...+++++
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~--------~---~~G~~----~~----~~~~~~i~~~~ 65 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSML--------F---VFGFR----AS----KMRQKKLSDLI 65 (212)
T ss_pred EEEECcc-cCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHH--------H---HhccC----HH----HhhhhhHHHHh
Confidence 5566655 788899999999999 999999999999999995 2 33441 11 11224578889
Q ss_pred CCCccccccccccCCCcccceecc
Q psy91 159 GSTVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 159 Q~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
|...+++.+ ++.++..+-
T Consensus 66 ~~~~~~~~~------~~~~~~~~~ 83 (212)
T cd03274 66 HNSAGHPNL------DSCSVEVHF 83 (212)
T ss_pred cCCCCCCCC------ceEEEEEEE
Confidence 988888888 888876654
No 377
>KOG0054|consensus
Probab=99.35 E-value=7e-13 Score=154.45 Aligned_cols=179 Identities=21% Similarity=0.279 Sum_probs=122.4
Q ss_pred CCCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC--CCCeeecccCCccceecccc
Q psy91 76 DRDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL--YGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~--~G~i~~~~~~G~~~~~~~~~ 144 (541)
....|.++|.+++++. .+.|+||||+| ||+||-|||||+||.+|+|.-. +|.+. ++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~---v~gs-------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVA---VNGS-------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEE---EcCe--------
Confidence 3446888999888864 34899999999 9999999999999999977543 45554 4433
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
++||+|.+.++. | ||+||+.||. +. ..++-+.+++.+.|.. .+..+
T Consensus 584 ---------iaYv~Q~pWI~n---g----TvreNILFG~-~~------d~~rY~~Vi~aC~L~~--------Dle~L--- 629 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWIQN---G----TVRENILFGS-PY------DEERYDKVIKACALKK--------DLEIL--- 629 (1381)
T ss_pred ---------EEEeccccHhhC---C----cHHHhhhcCc-cc------cHHHHHHHHHHccCHh--------HHhhc---
Confidence 799999988773 3 8999999992 21 2234445566555542 11000
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
..++. -.+|+.| .++||||+||+
T Consensus 630 p~GD~------------------------------------TeIGErG---------------------inLSGGQKqRI 652 (1381)
T KOG0054|consen 630 PFGDL------------------------------------TEIGERG---------------------INLSGGQKQRI 652 (1381)
T ss_pred CCCCc------------------------------------ceecCCc---------------------cCCcHhHHHHH
Confidence 01111 1345555 25899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchh
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDI 374 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di 374 (541)
++||+.+. +.++.++|-| +.-|+-...+ -|++.+ .-.-.++|++..+|.+.+
T Consensus 653 sLARAVY~------~adIYLLDDplSAVDahvg~~-----------if~~ci-~~~L~~KT~ILVTHql~~ 705 (1381)
T KOG0054|consen 653 SLARAVYQ------DADIYLLDDPLSAVDAHVGKH-----------IFEECI-RGLLRGKTVILVTHQLQF 705 (1381)
T ss_pred HHHHHHhc------cCCEEEEcCcchhhhHhhhHH-----------HHHHHH-HhhhcCCEEEEEeCchhh
Confidence 99999999 9999999999 7777654443 233333 111236788888886553
No 378
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.31 E-value=1.2e-12 Score=128.10 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=65.7
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee--eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL--RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~--~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
+..+.+.+...+..+..+|+|++|++.|+++++. ++ +++|+|||..|-+..... ++.++|.
T Consensus 121 l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~------~p~~~llllDEPt~gLD~~~~~-----------~l~~~l~ 183 (226)
T cd03270 121 LVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS------GLTGVLYVLDEPSIGLHPRDND-----------RLIETLK 183 (226)
T ss_pred HHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh------CCCCCEEEEeCCccCCCHHHHH-----------HHHHHHH
Confidence 3444433323456778899999999999999987 66 699999998886655443 6666776
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+..+.+.++++.+|+++.. ..+.++.++
T Consensus 184 ~~~~~g~tii~itH~~~~~--~~~d~i~~l 211 (226)
T cd03270 184 RLRDLGNTVLVVEHDEDTI--RAADHVIDI 211 (226)
T ss_pred HHHhCCCEEEEEEeCHHHH--HhCCEEEEe
Confidence 6655688999999998754 367777776
No 379
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.25 E-value=3.7e-12 Score=125.85 Aligned_cols=87 Identities=6% Similarity=-0.056 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
+..+..+|+|++|++.|+++++.. ..-+++++|+|||..|-+..... .+.+.|.+..+ +.++++.+
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~--~~~~~~illlDEp~~~ld~~~~~-----------~~~~~l~~~~~-~~~ii~~~ 218 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQ--KCDPAPFYLFDEIDAALDAQYRT-----------AVANMIKELSD-GAQFITTT 218 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHh--ccCCCCEEEEECCccCCCHHHHH-----------HHHHHHHHHhC-CCEEEEEe
Confidence 445677999999999999988410 00057999999998876654432 56666665544 56667777
Q ss_pred ccchhhhhcccceeEEEcCCCCC
Q psy91 370 KSMDIEERGVKLRLTVVDTPGFG 392 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvIpvi~k~ 392 (541)
|..++ .++..++.++.+-.++
T Consensus 219 h~~~~--~~~~d~i~~l~~~~~~ 239 (243)
T cd03272 219 FRPEL--LEVADKFYGVKFRNKV 239 (243)
T ss_pred cCHHH--HhhCCEEEEEEEECCE
Confidence 77543 3577777777665443
No 380
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.25 E-value=4.3e-12 Score=121.39 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCcceEEeeeEE----EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCccee
Q psy91 291 RKVPNVNDRQGKTTTIEKKSM----DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTT 366 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~----~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~ 366 (541)
..+..+|+|++|++.|+++++ . +++++++|||..|-+..... .+.+.+.+..+ +.+++
T Consensus 109 ~~~~~LS~G~kqrl~la~~l~~~~~~------~~~illlDEP~~~LD~~~~~-----------~l~~~l~~~~~-~~tiI 170 (197)
T cd03278 109 QRLSLLSGGEKALTALALLFAIFRVR------PSPFCVLDEVDAALDDANVE-----------RFARLLKEFSK-ETQFI 170 (197)
T ss_pred cchhhcCHHHHHHHHHHHHHHHhccC------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHhcc-CCEEE
Confidence 345668999999999998753 3 56899999998776654443 45555555543 56788
Q ss_pred eccccchhhhhcccceeEEEcCCC
Q psy91 367 IEKKSMDIEERGVKLRLTVVDTPG 390 (541)
Q Consensus 367 i~~~~~di~~~~l~~rvnvIpvi~ 390 (541)
+.+|+.++. ..+.++..|--..
T Consensus 171 iitH~~~~~--~~~d~v~~~~~~~ 192 (197)
T cd03278 171 VITHRKGTM--EAADRLYGVTMQE 192 (197)
T ss_pred EEECCHHHH--hhcceEEEEEecc
Confidence 899998754 3566666654333
No 381
>KOG0062|consensus
Probab=99.24 E-value=3.7e-12 Score=132.51 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=96.9
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccch--hhh-hhhhhccceeeEeccCCcchhHH
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQ--VHR-KSVKKGFDFTLMVVGESGLGKST 277 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q--~~~-~~vk~g~~f~lmv~G~sg~GKsT 277 (541)
++.+|..+.+++++.+.+.+...|..+++..- + ..+-.+|.|..-|.+ +.+ -.......-.+-++|+.|.||||
T Consensus 329 Ik~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~--p-~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst 405 (582)
T KOG0062|consen 329 IKMLGKLPALKSTLIEVLIGFLFPTEGEVLSP--P-NLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKST 405 (582)
T ss_pred HHHhccCCCCCccceecccceecCCCCCcCCC--C-eeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHH
Confidence 88889999999999988888888765543211 1 123345666655553 322 22333445567889999999999
Q ss_pred HHhhhccccc-----------------------------------------------------------CCCCCCCCCCC
Q psy91 278 LVNSLFLSDL-----------------------------------------------------------YGDRKVPNVND 298 (541)
Q Consensus 278 ~in~L~~~~~-----------------------------------------------------------~~~~~~~~ls~ 298 (541)
++..+..... +....+..+||
T Consensus 406 ~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSG 485 (582)
T KOG0062|consen 406 LLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSG 485 (582)
T ss_pred HHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCC
Confidence 9777632100 00112345899
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCC-CCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPG-FGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg-~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
||+.+|.+|...+. +|+|+|+|||+ +.|- +.- ...-.....-+-.+++++|+.++..
T Consensus 486 GQKsrvafA~~~~~------~PhlLVLDEPTNhLD~-dsl--------------~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 486 GQKSRVAFAACTWN------NPHLLVLDEPTNHLDR-DSL--------------GALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred cchhHHHHHHHhcC------CCcEEEecCCCccccH-HHH--------------HHHHHHHHhcCCcEEEEECcHHHHh
Confidence 99999999999998 99999999994 4432 211 1111112222445788888877654
No 382
>KOG2655|consensus
Probab=99.24 E-value=8.9e-12 Score=126.61 Aligned_cols=108 Identities=44% Similarity=0.811 Sum_probs=91.0
Q ss_pred ecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh-------hcccCcceeeccccchhhhhcccceeEEEc
Q psy91 315 ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND-------ENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 315 e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~-------e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.+|+.+.++++++-|.|.+ .||...|.+-+.. ..+..+++.+..+...|++.+++++|||||
T Consensus 17 KkG~~ftlmvvG~sGlGKs-----------TfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~Ltvid 85 (366)
T KOG2655|consen 17 KKGFDFTLMVVGESGLGKS-----------TFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVID 85 (366)
T ss_pred hcCCceEEEEecCCCccHH-----------HHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEec
Confidence 5788999999999999975 2334344443322 123345677788888999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhhccCcccccccccccchhhh
Q psy91 388 TPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNRFA 433 (541)
Q Consensus 388 vi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~~i~d~~v~ 433 (541)
|+|+||.++++.||++|++||++||++|+.+|+.++|..+.|+|||
T Consensus 86 tPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH 131 (366)
T KOG2655|consen 86 TPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVH 131 (366)
T ss_pred cCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceE
Confidence 9999999999999999999999999999999999999999999998
No 383
>KOG0927|consensus
Probab=99.23 E-value=4.7e-12 Score=132.49 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCceeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCee
Q psy91 77 RDYIGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRK 129 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~ 129 (541)
.|.|-+.|+++.|.+. .++++++|-| |+||||||||||||+++.+. |..|.|.
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs 448 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS 448 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccc
Confidence 5689999999999876 5899999987 99999999999999999554 4455544
No 384
>KOG0066|consensus
Probab=99.16 E-value=1.9e-11 Score=124.48 Aligned_cols=69 Identities=26% Similarity=0.356 Sum_probs=53.0
Q ss_pred ccccccccccccCCCCCCCCCCCceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCC
Q psy91 56 LTFPEAYRIKMTPDGGSCATDRDYIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLY 125 (541)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~ 125 (541)
+.-+..|.|+..-+. +..-.+|.+++.+|+|.| +.+++++.++|-| |||||||.||||||++|.|..++
T Consensus 564 L~RpKEY~VkF~FPe-p~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P 639 (807)
T KOG0066|consen 564 LQRPKEYSVKFQFPE-PTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP 639 (807)
T ss_pred HhCchheEEEEecCC-CCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC
Confidence 444446777654322 123345789999999999 5678999999977 99999999999999999887665
No 385
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.15 E-value=2.7e-11 Score=117.43 Aligned_cols=85 Identities=12% Similarity=0.113 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCcceEEeeeEEE---e-eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCccee
Q psy91 291 RKVPNVNDRQGKTTTIEKKSMD---I-EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTT 366 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~~---i-~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~ 366 (541)
..+..+|+|+++++.++++++. + .-.+.+++++|+|||..|-+..... .+.+++.+..+.+.+++
T Consensus 119 ~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~-----------~~~~~l~~~~~~~~tii 187 (213)
T cd03279 119 RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALE-----------AVATALELIRTENRMVG 187 (213)
T ss_pred CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEE
Confidence 4456789999999999998853 0 0012357899999998776554432 56667766655578999
Q ss_pred eccccchhhhhcccceeEEEc
Q psy91 367 IEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 367 i~~~~~di~~~~l~~rvnvIp 387 (541)
+.+|+.++.. .+..++.++.
T Consensus 188 ~itH~~~~~~-~~~~~i~~~~ 207 (213)
T cd03279 188 VISHVEELKE-RIPQRLEVIK 207 (213)
T ss_pred EEECchHHHH-hhCcEEEEEe
Confidence 9999877543 4566666654
No 386
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.11 E-value=1.5e-11 Score=122.14 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
++..+.+..+..++.+..+|+|++|++.|++++.. +...++++|+|||..|.+..... .+.+.|.+
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~---~~~~p~lllLDEPtsgLD~~~~~-----------~l~~~L~~ 217 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK---RSTGKTLYILDEPTTGLHFHDVK-----------KLLEVLQR 217 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhc---CCCCCcEEEEECCCCCCCHHHHH-----------HHHHHHHH
Confidence 44445444433456678899999999999999876 00126899999998886654442 55666666
Q ss_pred hcccCcceeeccccchhhhhcccceeEEE
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..+.+.++++.+|++++.. ...++.++
T Consensus 218 l~~~g~tvIiitH~~~~i~--~aD~ii~L 244 (261)
T cd03271 218 LVDKGNTVVVIEHNLDVIK--CADWIIDL 244 (261)
T ss_pred HHhCCCEEEEEeCCHHHHH--hCCEEEEe
Confidence 6666889999999988653 34444444
No 387
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.08 E-value=1.8e-11 Score=123.58 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=70.7
Q ss_pred CCceeeeccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
...++++|+.+.|... --+..||++| -|+|.||||||||++.| +..|.+|+|+ ++|+ .+++...
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~---ldg~----pV~~e~l 392 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL---LDGK----PVSAEQL 392 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee---ECCc----cCCCCCH
Confidence 5579999999999766 4678899998 89999999999999999 5679999999 9999 5666655
Q ss_pred ccccccEEEEeCCCcccccc
Q psy91 148 RGRQYPWGVVEGSTVLTPSL 167 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~l 167 (541)
.+.+.-++-||-|..||+.+
T Consensus 393 edYR~LfSavFsDyhLF~~l 412 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQL 412 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhh
Confidence 66666778888888888776
No 388
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.07 E-value=1.3e-10 Score=99.04 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=52.4
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTP 165 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~ 165 (541)
..+|++++|.+ +|+||||||||||++++. .|.+. +.|.+ ..........+.+++++|+ ++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~----~G~i~---~~g~d----i~~~~~~~~~~~~~~~~q~--lf- 67 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI----KRKHR---LVGDD----NVEIREDSKDELIGRNPEL--GL- 67 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh----CCeEE---EeeEe----HHHhhhhhcCCEEEEechh--cc-
Confidence 46899999988 999999999999999996 67888 77773 3222223344456777776 22
Q ss_pred ccccccCCCcccceecc
Q psy91 166 SLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 166 ~lig~~~qtv~e~l~~~ 182 (541)
+- ++++|+.++
T Consensus 68 ~~------ti~~Ni~~~ 78 (107)
T cd00820 68 EI------RLRLNIFLI 78 (107)
T ss_pred hh------hHHhhceee
Confidence 23 789999885
No 389
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.07 E-value=1.7e-10 Score=111.06 Aligned_cols=78 Identities=5% Similarity=0.058 Sum_probs=54.1
Q ss_pred CCCCCCCCCCcc------eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccc
Q psy91 292 KVPNVNDRQGKT------TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKT 364 (541)
Q Consensus 292 ~~~~ls~g~~q~------v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt 364 (541)
.+..+|+|++++ ++|+++... +++++++|||..+-+.... ++.+.+++.+..+. +++
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~------~p~illlDEP~~~LD~~~~----------~~~l~~~l~~~~~~~~~~ 175 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGS------NCGILALDEPTTNLDEENI----------EESLAEIIEERKSQKNFQ 175 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhcc------CCCEEEEcCCccccCHHHH----------HHHHHHHHHHHHhccCCE
Confidence 355688999986 567777766 8999999999776544332 11466667666555 778
Q ss_pred eeeccccchhhhhcccceeEEEc
Q psy91 365 TTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 365 ~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++.+|+.++.. ...++..+.
T Consensus 176 iiiitH~~~~~~--~~d~i~~l~ 196 (204)
T cd03240 176 LIVITHDEELVD--AADHIYRVE 196 (204)
T ss_pred EEEEEecHHHHh--hCCEEEEEe
Confidence 999999877653 345665554
No 390
>KOG0065|consensus
Probab=99.06 E-value=6.5e-10 Score=127.45 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=119.6
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC-----CCCeeecccCCccceecccccccccccccEEEEeCC
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL-----YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGS 160 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~-----~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~ 160 (541)
..+|+|+++.+ .++||.||||||||++|+|..+ +|+|. .+|. +.+.. .. ++.++|..|+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~is---y~G~----~~~e~--~~-~~~~aY~~e~ 197 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEIT---YNGH----DLKEF--VP-KKTVAYNSEQ 197 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCcee---ECCC----ccccc--cc-CceEEecccc
Confidence 36999999988 8999999999999999966432 46777 6666 22111 11 5678999999
Q ss_pred CccccccccccCCCcccceeccc---ccc----chhhHhHhh-hHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 161 TVLTPSLIGSLFQTDRDYIGFAT---LPE----QVHRKSVKK-GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 161 ~~l~~~lig~~~qtv~e~l~~~~---~~~----~~~~~e~~~-~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
+..+|++ ||+|++.|+. .+. ...+.+..+ ..+.+++.+||++++++.+++.+
T Consensus 198 DvH~p~l------TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~-------------- 257 (1391)
T KOG0065|consen 198 DVHFPEL------TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDM-------------- 257 (1391)
T ss_pred cccccee------EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccc--------------
Confidence 9999999 9999999971 221 122333222 56778999999998776554222
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
....|||+++|++++...+.
T Consensus 258 ------------------------------------------------------------~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 258 ------------------------------------------------------------VRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred ------------------------------------------------------------cccccCcccceeeeeeeeec
Confidence 23468899999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccC
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~ 362 (541)
+.+++..|+++-|.+-.... +|.+.++...+..
T Consensus 278 ------~~~~~~~De~t~GLDSsTal-----------~iik~lr~~a~~~ 310 (1391)
T KOG0065|consen 278 ------PASILFWDEITRGLDSSTAF-----------QIIKALRQLAHIT 310 (1391)
T ss_pred ------CcceeeeecccccccHHHHH-----------HHHHHHHHHHhhh
Confidence 99999999997776544433 5666666666553
No 391
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.05 E-value=2.5e-10 Score=115.29 Aligned_cols=109 Identities=37% Similarity=0.730 Sum_probs=88.3
Q ss_pred eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-----c---cCcceeeccccchhhhhcccceeEE
Q psy91 314 EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-----R---QGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 314 ~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-----~---~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
..+|+++.++++.+.|.|.+. ||..-|.+-+.... + ...++.+......+++.+++.++||
T Consensus 18 ~k~Gi~f~im~~G~sG~GKtt-----------fiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~v 86 (373)
T COG5019 18 SKKGIDFTIMVVGESGLGKTT-----------FINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTV 86 (373)
T ss_pred HhcCCceEEEEecCCCCchhH-----------HHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEE
Confidence 356899999999999999763 33333444333331 1 1244556667778888999999999
Q ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHhhhccCcccccccc-cccchhhh
Q psy91 386 VDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRK-NIVDNRFA 433 (541)
Q Consensus 386 Ipvi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~-~i~d~~v~ 433 (541)
|+++|+||.++++.||.+|++||++||++|+.+|....|. .+.|+|||
T Consensus 87 IDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH 135 (373)
T COG5019 87 IDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVH 135 (373)
T ss_pred eccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceE
Confidence 9999999999999999999999999999999999999887 79999999
No 392
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.05 E-value=2e-10 Score=124.30 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=109.8
Q ss_pred CCceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceeccccccccc
Q psy91 77 RDYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
...|.++|++..-++ ...|++.++.| .|.||||||||||+|+|+|...-|+ |. +..+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~-------G~---I~~P------ 453 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS-------GR---ISMP------ 453 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC-------Cc---eecC------
Confidence 467899999998865 57899999999 8999999999999999988766432 33 1111
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
....+-|++|.+.+- -| |.+|.+.++...... ..+.+.++|..+||.++..+
T Consensus 454 ~~~~~lflpQ~PY~p---~G----tLre~l~YP~~~~~~----~d~~l~~vL~~vgL~~L~~r----------------- 505 (604)
T COG4178 454 ADSALLFLPQRPYLP---QG----TLREALCYPNAAPDF----SDAELVAVLHKVGLGDLAER----------------- 505 (604)
T ss_pred CCCceEEecCCCCCC---Cc----cHHHHHhCCCCCCCC----ChHHHHHHHHHcCcHHHHHH-----------------
Confidence 123467889976654 22 788888887433222 23446677888888764433
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
|-..+ +--..+|+|++|++++++.
T Consensus 506 ----------------------------------------------------l~~~~----~W~~vLS~GEqQRlafARi 529 (604)
T COG4178 506 ----------------------------------------------------LDEED----RWDRVLSGGEQQRLAFARL 529 (604)
T ss_pred ----------------------------------------------------HhccC----cHhhhcChhHHHHHHHHHH
Confidence 11111 1123489999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccch
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~ 337 (541)
+.. +|++.++||-+..-+...+
T Consensus 530 lL~------kP~~v~LDEATsALDe~~e 551 (604)
T COG4178 530 LLH------KPKWVFLDEATSALDEETE 551 (604)
T ss_pred HHc------CCCEEEEecchhccChHHH
Confidence 999 9999999999766554444
No 393
>KOG0927|consensus
Probab=99.03 E-value=1.3e-10 Score=121.96 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=45.6
Q ss_pred CCCCCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCC
Q psy91 74 ATDRDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLY 125 (541)
Q Consensus 74 ~~~~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~ 125 (541)
..+...|.+.++++.|.+..+++|+.|++ +|+|||||||||+|++|.+...+
T Consensus 70 ~~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 70 HPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred CcccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 34556789999999999999999999999 99999999999999999665433
No 394
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.03 E-value=2.4e-10 Score=113.38 Aligned_cols=80 Identities=8% Similarity=-0.043 Sum_probs=56.4
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
.+..+|+|+++++.|+++++.- .--+++++|+|||..|-+..... .+.+++.+..+.+.++++.+|+
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~--~~~~p~~lllDEPt~~LD~~~~~-----------~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIH--SYQPAPFFVLDEVDAALDNTNVG-----------KVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHh--ccCCCCEEEEecccccCCHHHHH-----------HHHHHHHHhccCCcEEEEEECC
Confidence 4456899999999999987530 00047999999998876655443 5566666665557889999998
Q ss_pred chhhhhcccceeEEE
Q psy91 372 MDIEERGVKLRLTVV 386 (541)
Q Consensus 372 ~di~~~~l~~rvnvI 386 (541)
.++. ..+.++.++
T Consensus 219 ~~~~--~~~d~i~~~ 231 (247)
T cd03275 219 EEFF--SKADALVGV 231 (247)
T ss_pred HHHH--hhCCeEEEE
Confidence 6654 356666665
No 395
>KOG0060|consensus
Probab=98.97 E-value=9.1e-10 Score=116.42 Aligned_cols=160 Identities=15% Similarity=0.079 Sum_probs=105.7
Q ss_pred Cceeeecccccccc-c-ceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHR-K-SVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|++++|+..-++ . .+.+++||.| .|+||||||||+|||+|++.... ..|+.. .. .+.
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~-------~~G~l~-k~-----~~~ 498 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS-------TGGKLT-KP-----TDG 498 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc-------CCCeEE-ec-----ccC
Confidence 58999999998875 4 4777899999 89999999999999999887653 233310 00 001
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceecccccc-chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
-...+=||+|.+.+. .| |.++.+.|+.... ...+....+++...|+.++|.++.. ...|++..
T Consensus 499 ~~~~lfflPQrPYmt---~G----TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~-----r~ggld~~---- 562 (659)
T KOG0060|consen 499 GPKDLFFLPQRPYMT---LG----TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLE-----REGGLDQQ---- 562 (659)
T ss_pred CCCceEEecCCCCcc---cc----chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHH-----HhCCCCch----
Confidence 113477999987765 55 7888888872211 1122223345666777777766311 11222110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
........+|.|++||+++|+
T Consensus 563 -----------------------------------------------------------~~~dW~dvLS~GEqQRLa~AR 583 (659)
T KOG0060|consen 563 -----------------------------------------------------------VDWDWMDVLSPGEQQRLAFAR 583 (659)
T ss_pred -----------------------------------------------------------hhccHHhhcCHHHHHHHHHHH
Confidence 001123458999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCC
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+. +|++-|+||-+..
T Consensus 584 Lfy~------kPk~AiLDE~TSA 600 (659)
T KOG0060|consen 584 LFYH------KPKFAILDECTSA 600 (659)
T ss_pred HHhc------CCceEEeechhhh
Confidence 9888 9999999997553
No 396
>KOG1547|consensus
Probab=98.97 E-value=4.6e-10 Score=106.37 Aligned_cols=108 Identities=40% Similarity=0.698 Sum_probs=85.8
Q ss_pred ecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhh-------cccCcceeeccccchhhhhcccceeEEEc
Q psy91 315 ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE-------NRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 315 e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e-------~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
..|++++++++.-.|.|.+.-. ...|...+-.. ....+|+-+......|+++++..++|+||
T Consensus 42 k~GF~FNIMVVgqSglgkstli-----------nTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviD 110 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLI-----------NTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVID 110 (336)
T ss_pred hccCceEEEEEecCCCCchhhH-----------HHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEec
Confidence 3578999999999999987322 12333333221 12345566666667789999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhhccCccccccc-ccccchhhh
Q psy91 388 TPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNR-KNIVDNRFA 433 (541)
Q Consensus 388 vi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~-~~i~d~~v~ 433 (541)
++|+||.+|++.||.||..||.+|+.+|+.+|...+| +.|.|.|||
T Consensus 111 TPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVH 157 (336)
T KOG1547|consen 111 TPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVH 157 (336)
T ss_pred CCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEE
Confidence 9999999999999999999999999999999988776 468999998
No 397
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.95 E-value=2.2e-09 Score=114.03 Aligned_cols=198 Identities=14% Similarity=0.194 Sum_probs=140.9
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.+++++++..- .++++||++ +|.|-=|||+|=|+++|.| ....|+|. ++|+.+... .+..
T Consensus 261 ~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~---l~G~~v~~~---sp~~ 330 (500)
T COG1129 261 EPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEIL---LDGKPVRIR---SPRD 330 (500)
T ss_pred CcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEE---ECCEEccCC---CHHH
Confidence 4567788876532 589999998 9999999999999999955 45689999 999833221 1233
Q ss_pred cccccEEEEeCC---CccccccccccCCCcccceeccccccc-----hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 149 GRQYPWGVVEGS---TVLTPSLIGSLFQTDRDYIGFATLPEQ-----VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 149 ~~~~~~g~V~Q~---~~l~~~lig~~~qtv~e~l~~~~~~~~-----~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
..+..++||+.| ..++..+ ++.+|+.++.+... +......+.+..+...+++
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~------sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~I-------------- 390 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDM------SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-------------- 390 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCC------cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCc--------------
Confidence 455689999987 5677777 99999998722210 1111112222222222222
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
..--.+..+..+|||.
T Consensus 391 ----------------------------------------------------------------k~~s~~~~v~~LSGGN 406 (500)
T COG1129 391 ----------------------------------------------------------------KTPSPEQPIGTLSGGN 406 (500)
T ss_pred ----------------------------------------------------------------ccCCccchhhcCCchh
Confidence 1112234566799999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|++.+.. +|+++|+|||+-|=++.... .+-+.+.+..+.+..+++.+.+++ |-.+++
T Consensus 407 QQKVvlarwL~~------~p~vLilDEPTRGIDVGAK~-----------eIy~li~~lA~~G~ail~iSSElp-Ell~~~ 468 (500)
T COG1129 407 QQKVVLARWLAT------DPKVLILDEPTRGIDVGAKA-----------EIYRLIRELAAEGKAILMISSELP-ELLGLS 468 (500)
T ss_pred hhhHHHHHHHhc------CCCEEEECCCCcCcccchHH-----------HHHHHHHHHHHCCCEEEEEeCChH-HHHhhC
Confidence 999999999988 99999999999998877764 677788888889999988886654 335788
Q ss_pred ceeEEE
Q psy91 381 LRLTVV 386 (541)
Q Consensus 381 ~rvnvI 386 (541)
.|+.|.
T Consensus 469 DRIlVm 474 (500)
T COG1129 469 DRILVM 474 (500)
T ss_pred CEEEEE
Confidence 888775
No 398
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.92 E-value=1.9e-09 Score=103.33 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=47.4
Q ss_pred cceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccccc
Q psy91 92 KSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSL 167 (541)
Q Consensus 92 ~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~l 167 (541)
..+++++++.. +|+|||||||||||++|.+... +. ..|. .++ . ..+++|.+.+++++
T Consensus 14 ~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~---l~---~~G~----~v~-----a----~~~~~q~~~l~~~~ 74 (199)
T cd03283 14 KRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVI---LA---QAGA----PVC-----A----SSFELPPVKIFTSI 74 (199)
T ss_pred CeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHH---HH---HcCC----EEe-----c----CccCcccceEEEec
Confidence 45788888765 9999999999999999954211 11 2454 111 1 13677878899999
Q ss_pred ccccCCCcccceecc
Q psy91 168 IGSLFQTDRDYIGFA 182 (541)
Q Consensus 168 ig~~~qtv~e~l~~~ 182 (541)
++.|++.++
T Consensus 75 ------~~~d~l~~~ 83 (199)
T cd03283 75 ------RVSDDLRDG 83 (199)
T ss_pred ------cchhccccc
Confidence 999999886
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.88 E-value=9.3e-10 Score=113.32 Aligned_cols=158 Identities=20% Similarity=0.218 Sum_probs=99.7
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccc--hhhhhhhhhccceeeEeccCCcchhHHH
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPE--QVHRKSVKKGFDFTLMVVGESGLGKSTL 278 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~--q~~~~~vk~g~~f~lmv~G~sg~GKsT~ 278 (541)
+..+|.+|.||||+.+.++|..+++.+. ..+....+..+||.-.+.-. ++.+......+ .+.-=|+.+
T Consensus 370 igilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~--------~~s~~~~ei 439 (591)
T COG1245 370 IGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAF--------GSSYFKTEI 439 (591)
T ss_pred EEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhc--------ccchhHHhh
Confidence 7789999999999999999999987665 11111122222222221111 22222222111 111225677
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCC-CCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTP-GFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DeP-g~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
++-|-+.+ +.++.+..+|||+-|+++|+.++.. ...|.++||| .|.|.......-+.|..+|+
T Consensus 440 ~~pl~l~~-i~e~~v~~LSGGELQRvaIaa~L~r------eADlYllDEPSA~LDvEqR~~vakvIRR~~e--------- 503 (591)
T COG1245 440 VKPLNLED-LLERPVDELSGGELQRVAIAAALSR------EADLYLLDEPSAYLDVEQRIIVAKVIRRFIE--------- 503 (591)
T ss_pred cCccchHH-HHhcccccCCchhHHHHHHHHHhcc------ccCEEEecCchhhccHHHHHHHHHHHHHHHh---------
Confidence 77777766 4567889999999999999999988 8999999999 77776544443343333333
Q ss_pred hcccCcceeeccccchhhhhcccceeEEEc
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
...++..+..|++-+.+. ++.|+.+..
T Consensus 504 --~~~kta~vVdHDi~~~dy-vsDr~ivF~ 530 (591)
T COG1245 504 --NNEKTALVVDHDIYMIDY-VSDRLIVFE 530 (591)
T ss_pred --hcCceEEEEecceehhhh-hhceEEEEe
Confidence 234567777777654433 777777764
No 400
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.86 E-value=2.5e-09 Score=99.79 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=51.0
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC-CCccchhhhhhhhhhhhhhhhhhhhhhcccC-cceeecc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG-DSINSEESWRACCSYIDDQFRQYFNDENRQG-KTTTIEK 369 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G-d~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~-rt~~i~~ 369 (541)
++..+.+|+.|.|.|+.+.+. +++|+|.|||+.. +.+... |+...|...++.+ .++...+
T Consensus 155 YP~ElTeGE~QKVMIA~A~An------qPrLLIADEPTN~~e~~Tq~------------QifRLLs~mNQn~~TtILL~s 216 (330)
T COG4170 155 YPYELTEGECQKVMIAIALAN------QPRLLIADEPTNSMEPTTQA------------QIFRLLSRLNQNSNTTILLIS 216 (330)
T ss_pred CcchhccCcceeeeeehhhcc------CCceEeccCCCcccCccHHH------------HHHHHHHHhhccCCceEEEEc
Confidence 455677899999999999998 9999999999543 333222 7777777776654 4555666
Q ss_pred ccchhhhhcccceeEEE
Q psy91 370 KSMDIEERGVKLRLTVV 386 (541)
Q Consensus 370 ~~~di~~~~l~~rvnvI 386 (541)
|++.-. ..-..+++|.
T Consensus 217 ~Dl~~i-s~W~d~i~Vl 232 (330)
T COG4170 217 HDLQMI-SQWADKINVL 232 (330)
T ss_pred ccHHHH-HHHhhheEEE
Confidence 654321 1344455554
No 401
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.84 E-value=2.3e-09 Score=107.97 Aligned_cols=107 Identities=37% Similarity=0.777 Sum_probs=78.1
Q ss_pred cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc--------ccCcceeeccccchhhhhcccceeEEEc
Q psy91 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN--------RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 316 ~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~--------~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+|++++|+|+.+.|.|++ .||+.-|...+.... ...++..+..+...+.+.++..+++||+
T Consensus 1 kg~~fnImVvG~sG~GKT-----------TFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiD 69 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKT-----------TFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIID 69 (281)
T ss_dssp HEEEEEEEEEECTTSSHH-----------HHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEE
T ss_pred CCceEEEEEECCCCCCHH-----------HHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEe
Confidence 478999999999999975 234444444333332 1234455666667777788999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhhccCcccccccccccchhhh
Q psy91 388 TPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNRFA 433 (541)
Q Consensus 388 vi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~~i~d~~v~ 433 (541)
++|+||.++++.+|++|++||++||+.|+.+|....|..+.|+|||
T Consensus 70 TpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH 115 (281)
T PF00735_consen 70 TPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVH 115 (281)
T ss_dssp EC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EE
T ss_pred CCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcc
Confidence 9999999999999999999999999999999999988889999998
No 402
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.82 E-value=5.1e-09 Score=100.31 Aligned_cols=81 Identities=9% Similarity=0.003 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCCcceEEeeeE----EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc---
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKS----MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ--- 361 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~----~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~--- 361 (541)
.+..+..+|+|+++++.|++++ +. +++++|+|||..|-+..... .+.++|.+..+.
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~------~p~illlDEP~~glD~~~~~-----------~~~~~l~~~~~~~~~ 165 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVM------ESPFRCLDEFDVFMDMVNRK-----------ISTDLLVKEAKKQPG 165 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhccc------CCCEEEecCcccccCHHHHH-----------HHHHHHHHHHhcCCC
Confidence 3445677899999999998876 45 89999999997776655443 556666665332
Q ss_pred CcceeeccccchhhhhcccceeEEEcC
Q psy91 362 GKTTTIEKKSMDIEERGVKLRLTVVDT 388 (541)
Q Consensus 362 ~rt~~i~~~~~di~~~~l~~rvnvIpv 388 (541)
+.++++.+|+++.... + .+|-|.++
T Consensus 166 ~~~iii~th~~~~i~~-~-d~v~~~~~ 190 (198)
T cd03276 166 RQFIFITPQDISGLAS-S-DDVKVFRM 190 (198)
T ss_pred cEEEEEECCccccccc-c-cceeEEEe
Confidence 3477888888876543 2 45555554
No 403
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.82 E-value=4.2e-09 Score=126.50 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeec
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIE 368 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~ 368 (541)
.++.+..+|+|++|++.|+++++. ...+++++|+|||..|.+..... ++.++|.+..+.+.++++.
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~---~~~~P~LLILDEPTsGLD~~~~~-----------~Ll~lL~~L~~~G~TVIiI 868 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLA---PSKKPTLYVLDEPTTGLHTHDIK-----------ALIYVLQSLTHQGHTVVII 868 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhh---cCCCCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEE
Confidence 456678899999999999999851 00179999999998886655443 6777777776678899999
Q ss_pred cccchhhhhcccceeEEE
Q psy91 369 KKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 369 ~~~~di~~~~l~~rvnvI 386 (541)
+|++++. ....++.++
T Consensus 869 sHdl~~i--~~aDrVi~L 884 (1809)
T PRK00635 869 EHNMHVV--KVADYVLEL 884 (1809)
T ss_pred eCCHHHH--HhCCEEEEE
Confidence 9999876 466676666
No 404
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.70 E-value=7.9e-08 Score=100.63 Aligned_cols=203 Identities=15% Similarity=0.181 Sum_probs=142.3
Q ss_pred CCCceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccc-c
Q psy91 76 DRDYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAG-T 145 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~-~ 145 (541)
..+.+++++|+..-.. ...+++|||+| +|.|=+|-|-+-|+.+|+|. +..|.|. ++|+++ ... .
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~---l~G~~v---~~~~~ 327 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL---LNGKDV---LGRLS 327 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEE---ECCEec---cccCC
Confidence 4568899999887654 47899999999 99999999999999999553 5679999 889843 111 1
Q ss_pred ccccccccEEEEeCCC---ccccccccccCCCcccceeccccccc-------hhhHhHhhhHHHHHHHhCCCCccchhhh
Q psy91 146 KVRGRQYPWGVVEGST---VLTPSLIGSLFQTDRDYIGFATLPEQ-------VHRKSVKKGFDFTLMVVGESGLGKSTLV 215 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~---~l~~~lig~~~qtv~e~l~~~~~~~~-------~~~~e~~~~v~~~L~~vGL~g~~ks~l~ 215 (541)
....++..++||+.|. .+.+.+ ++.||+.+...... .......+.+..+++.++..
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~------sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr-------- 393 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR-------- 393 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCc------cHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc--------
Confidence 2234456789999874 677888 99999988743311 11122222222222222211
Q ss_pred hhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCC
Q psy91 216 NSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 295 (541)
Q Consensus 216 ~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ 295 (541)
.--.......
T Consensus 394 ----------------------------------------------------------------------~~~~~~~a~~ 403 (501)
T COG3845 394 ----------------------------------------------------------------------APSPDAPARS 403 (501)
T ss_pred ----------------------------------------------------------------------CCCCCcchhh
Confidence 0011223556
Q ss_pred CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+|||.+|++-+++.+.. +|+|+|+..|+.|-++.... .+.+.|.++.+.+..+++.+.++| +
T Consensus 404 LSGGNqQK~IlaREl~~------~p~lLI~~qPTrGLDvgA~~-----------~I~~~l~e~r~~G~AVLLiS~dLD-E 465 (501)
T COG3845 404 LSGGNQQKLILARELAR------RPDLLIAAQPTRGLDVGAIE-----------FIHERLLELRDAGKAVLLISEDLD-E 465 (501)
T ss_pred cCCcceehhhhhhhhcc------CCCEEEEcCCCccccHHHHH-----------HHHHHHHHHHhcCCEEEEEehhHH-H
Confidence 89999999999999888 99999999999998877653 455667777888888888775555 2
Q ss_pred hhcccceeEEE
Q psy91 376 ERGVKLRLTVV 386 (541)
Q Consensus 376 ~~~l~~rvnvI 386 (541)
-..++.|+.++
T Consensus 466 il~lsDrIaVi 476 (501)
T COG3845 466 ILELSDRIAVI 476 (501)
T ss_pred HHHhhheeeee
Confidence 24678887766
No 405
>KOG3859|consensus
Probab=98.69 E-value=8.8e-09 Score=99.64 Aligned_cols=138 Identities=26% Similarity=0.522 Sum_probs=107.4
Q ss_pred ecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc--CcceeeccccchhhhhcccceeEEEcCCCCC
Q psy91 315 ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ--GKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 392 (541)
Q Consensus 315 e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~--~rt~~i~~~~~di~~~~l~~rvnvIpvi~k~ 392 (541)
+.|+.++|+.+.|-|.|.+. .|+..|..-|..+... -.++....+..++.+..+.++++++++.|+|
T Consensus 38 ~~GF~FNilCvGETg~GKsT-----------LmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKST-----------LMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred hcCceEEEEEeccCCccHHH-----------HHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 46889999999999999753 3444555545444322 2355666778999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhccCccccccccc--ccchhhh---------------------hhhccC--CCCccccc
Q psy91 393 DSINSEESWRACCSYIDDQFRQYFNDESGLNRKN--IVDNRFA---------------------TNRHRN--NAPTPSQV 447 (541)
Q Consensus 393 D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~~--i~d~~v~---------------------~~~~~~--~~p~~vev 447 (541)
|.++.++.+++|.+|||.||+.|+.+|.++.|.- ..|.||| +.+..+ ++|+++..
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~LdskVNIIPvIAKa 186 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSKVNIIPVIAKA 186 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhhhhhHHHHHHh
Confidence 9999999999999999999999999999887753 4577777 334444 88988888
Q ss_pred CCCCcccHHHHHHHHh
Q psy91 448 ENPKHSDFNKLRNMLI 463 (541)
Q Consensus 448 en~~h~DF~~Lr~~L~ 463 (541)
+--..++...++.-++
T Consensus 187 DtisK~eL~~FK~kim 202 (406)
T KOG3859|consen 187 DTISKEELKRFKIKIM 202 (406)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 8777777777776554
No 406
>KOG2355|consensus
Probab=98.69 E-value=2.2e-08 Score=93.44 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKK 370 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~ 370 (541)
.....|.||+++|+|..-+.. +++++++||-+.-.++-. ...+.+||++|... +-|++..+|
T Consensus 144 RmHkvSDGqrRRVQicMGLL~------PfkVLLLDEVTVDLDVlA-----------RadLLeFlkeEce~RgatIVYATH 206 (291)
T KOG2355|consen 144 RMHKVSDGQRRRVQICMGLLK------PFKVLLLDEVTVDLDVLA-----------RADLLEFLKEECEQRGATIVYATH 206 (291)
T ss_pred EEeeccccchhhhHHHHhccc------ceeEEEeeeeEeehHHHH-----------HHHHHHHHHHHHhhcCcEEEEEee
Confidence 345689999999999999988 999999999876433222 22678899999765 556777888
Q ss_pred cchhhh
Q psy91 371 SMDIEE 376 (541)
Q Consensus 371 ~~di~~ 376 (541)
-.|-.+
T Consensus 207 IFDGLe 212 (291)
T KOG2355|consen 207 IFDGLE 212 (291)
T ss_pred eccchh
Confidence 777443
No 407
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.65 E-value=5.8e-08 Score=111.95 Aligned_cols=92 Identities=10% Similarity=0.145 Sum_probs=68.0
Q ss_pred HHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee---eEEEEcCCCCCCCccchhhhhhhhhhhhhhhh
Q psy91 276 STLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL---RLTVVDTPGFGDSINSEESWRACCSYIDDQFR 352 (541)
Q Consensus 276 sT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~---~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~ 352 (541)
-.+++.+.+..+..++.+..+|+|++|++.|+++++. ++ .++|+|||..|.+..... .+.
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~------~p~~~~llILDEPtsGLD~~~~~-----------~L~ 873 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSK------RSTGKTLYILDEPTTGLHFEDIR-----------KLL 873 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhc------CCCCCeEEEEECCCCCCCHHHHH-----------HHH
Confidence 3455555655444567788999999999999999887 67 899999998887655443 566
Q ss_pred hhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 353 QYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 353 ~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++|.+..+.+.++++.+|++++.. ...++.++
T Consensus 874 ~~L~~l~~~G~TVIiitH~~~~i~--~aD~ii~L 905 (943)
T PRK00349 874 EVLHRLVDKGNTVVVIEHNLDVIK--TADWIIDL 905 (943)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHH--hCCEEEEe
Confidence 667666666889999999987653 34454444
No 408
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=1.8e-08 Score=115.91 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=66.4
Q ss_pred HHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 277 TLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 277 T~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
.++..+.+..+..++....+|+|++|++.|+++++. +..++.++|+|||..|.+..... ++.++|.
T Consensus 810 ~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~---~~~~p~llILDEPtsgLD~~~~~-----------~L~~~L~ 875 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK---RSTGRTLYILDEPTTGLHFDDIK-----------KLLEVLQ 875 (924)
T ss_pred HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhh---cCCCCCEEEEECCCCCCCHHHHH-----------HHHHHHH
Confidence 345555554433466778899999999999998864 11147999999998887765543 5666666
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+....+.++++.+|++++.. ...++.++
T Consensus 876 ~l~~~G~TVIvi~H~~~~i~--~aD~ii~L 903 (924)
T TIGR00630 876 RLVDQGNTVVVIEHNLDVIK--TADYIIDL 903 (924)
T ss_pred HHHhCCCEEEEEeCCHHHHH--hCCEEEEe
Confidence 66656889999999988653 34555554
No 409
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.61 E-value=1.8e-07 Score=87.71 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=78.0
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhh
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRAC 343 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i 343 (541)
.+.++|+|++|||||||+|++..- ....|..+.+|-.|.-..+. -.+.++|-||||.+.-....
T Consensus 26 EIaF~GRSNVGKSSlIN~l~~~k~-----LArtSktPGrTq~iNff~~~-------~~~~lVDlPGYGyAkv~k~~---- 89 (200)
T COG0218 26 EIAFAGRSNVGKSSLINALTNQKN-----LARTSKTPGRTQLINFFEVD-------DELRLVDLPGYGYAKVPKEV---- 89 (200)
T ss_pred EEEEEccCcccHHHHHHHHhCCcc-----eeecCCCCCccceeEEEEec-------CcEEEEeCCCcccccCCHHH----
Confidence 578899999999999999998552 23456667777777766544 34899999999998544321
Q ss_pred hhhhhhhhhhhhhhhcccCcceeecc--c---cchhhhhc--ccceeEEEcCCCCCCCCCcHHH
Q psy91 344 CSYIDDQFRQYFNDENRQGKTTTIEK--K---SMDIEERG--VKLRLTVVDTPGFGDSINSEES 400 (541)
Q Consensus 344 ~~yI~~~~~~~l~~e~~~~rt~~i~~--~---~~di~~~~--l~~rvnvIpvi~k~D~lt~~e~ 400 (541)
.+.....+.+||........-+.+.. | +.|.+.-. ....+.++-+..|+|.++..+.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH
Confidence 22222355667766555444333221 2 23333211 3445566666889999998775
No 410
>KOG0064|consensus
Probab=98.53 E-value=5.4e-08 Score=102.01 Aligned_cols=81 Identities=22% Similarity=0.181 Sum_probs=59.1
Q ss_pred ceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceeccccccccccc
Q psy91 79 YIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 79 ~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
.|.++|+..-.+. ..++..++|.| .|+||||||||+|+|+|.|...- .+|. .. . .+.
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv-------y~g~----L~--~---P~~ 544 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV-------YNGL----LS--I---PRP 544 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc-------cCCe----ee--c---CCC
Confidence 5788888877664 44778899999 89999999999999999776443 3454 11 0 112
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecc
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
.++-|++|.+.+- .| |.+|.+.++
T Consensus 545 ~~mFYIPQRPYms---~g----tlRDQIIYP 568 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS---GG----TLRDQIIYP 568 (728)
T ss_pred cceEeccCCCccC---cC----cccceeecC
Confidence 3478999987765 34 788888887
No 411
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.30 E-value=1.3e-07 Score=99.95 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=36.5
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCC-CeeecccCCccc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYG-DRKVPNVNGSNT 138 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G-~i~~~~~~G~~~ 138 (541)
..+|++||+++ +|+|||||||||||+.....+..| +|. ++|+.+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~~l~~~~sGg~I~---ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILAENKRKFSEGYEFF---LDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHhcCCCCCCCCCEEE---ECCEEC
Confidence 35899999998 999999999999999445667777 699 888733
No 412
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.27 E-value=3.1e-07 Score=94.00 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC-CCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceee
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG-DSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTI 367 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G-d~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i 367 (541)
.+.+..+|.||+.+..|++.... .++++++|+-+.- |..... ....-+.+..+ .+.|.++
T Consensus 502 Rr~f~ELStGQKeR~KLAkllae------rpn~~~iDEF~AhLD~~TA~------------rVArkiselaRe~giTliv 563 (593)
T COG2401 502 RRKFSELSTGQKERAKLAKLLAE------RPNVLLIDEFAAHLDELTAV------------RVARKISELAREAGITLIV 563 (593)
T ss_pred hccHhhcCcchHHHHHHHHHHhc------CCCcEEhhhhhhhcCHHHHH------------HHHHHHHHHHHHhCCeEEE
Confidence 34567799999999999999888 8999999997443 222111 23333444433 3667777
Q ss_pred ccccchhh
Q psy91 368 EKKSMDIE 375 (541)
Q Consensus 368 ~~~~~di~ 375 (541)
.+|..|+.
T Consensus 564 vThrpEv~ 571 (593)
T COG2401 564 VTHRPEVG 571 (593)
T ss_pred EecCHHHH
Confidence 77776654
No 413
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.20 E-value=7.2e-06 Score=79.41 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=39.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
++|+++|.+|+||||++|++.+.+.+..... .....+........+. ...++|+||||++|...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~---~~~~t~~~~~~~~~~~------g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSS---AKSVTQECQKYSGEVD------GRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TT---TSS--SS-EEEEEEET------TEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccc---cCCcccccceeeeeec------ceEEEEEeCCCCCCCcc
Confidence 4799999999999999999988775432210 0112233333333333 47789999999987654
No 414
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.19 E-value=7.2e-05 Score=80.24 Aligned_cols=64 Identities=27% Similarity=0.421 Sum_probs=40.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
.+++.++|.+|+|||||+|.|+..+...... . .. .........++.+| .++.++||||..+...
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---~---~g--tt~~~~~~~~~~~~--~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSD---I---AG--TTRDSIDIPFERNG--KKYLLIDTAGIRRKGK 235 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCC---C---CC--ceECcEeEEEEECC--cEEEEEECCCcccccc
Confidence 4789999999999999999998765221111 1 11 12222222333344 3789999999876543
No 415
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.19 E-value=7.5e-06 Score=84.91 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=38.2
Q ss_pred hhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC-CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 258 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ-GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 258 k~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~-~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.++..++|.|+|++|+|||||||.|.+-.. .....+..|. ..|.....+... --++++++|-||.|-.
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~---~d~~aA~tGv~etT~~~~~Y~~p-----~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGH---EDEGAAPTGVVETTMEPTPYPHP-----KFPNVTLWDLPGIGTP 99 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--T---TSTTS--SSSHSCCTS-EEEE-S-----S-TTEEEEEE--GGGS
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCC---CCcCcCCCCCCcCCCCCeeCCCC-----CCCCCeEEeCCCCCCC
Confidence 356778999999999999999999986431 1122222232 223333333321 1367999999999954
No 416
>KOG0066|consensus
Probab=98.18 E-value=2.9e-06 Score=87.25 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=39.9
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~ 122 (541)
.-|.++|.+.+-.++.++.+.|+.| ++|||||-||||||+-|+.+
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~R 313 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAAR 313 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhh
Confidence 4578888888888899999999999 99999999999999999543
No 417
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.17 E-value=4.1e-06 Score=83.04 Aligned_cols=67 Identities=30% Similarity=0.563 Sum_probs=44.0
Q ss_pred hhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 258 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 258 k~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.....++++++|.+|+|||||+|+|++........ . ...+..+... ....+| .++.|+||||+++..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~---~---~~~T~~~~~~--~~~~~g--~~i~vIDTPGl~~~~ 93 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA---F---QSETLRVREV--SGTVDG--FKLNIIDTPGLLESV 93 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC---C---CCceEEEEEE--EEEECC--eEEEEEECCCcCcch
Confidence 34567899999999999999999999876322111 1 1122222222 222333 578999999999874
No 418
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.12 E-value=2.6e-06 Score=85.79 Aligned_cols=107 Identities=42% Similarity=0.782 Sum_probs=78.7
Q ss_pred cCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc--------ccCcceeeccccchhhhhcccceeEEEc
Q psy91 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN--------RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 316 ~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~--------~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+|+.++|+++..+|.|++. +|+..|...+.... ....++.+..+...++..+...++++||
T Consensus 1 ~g~~f~I~vvG~sg~GKST-----------liN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiD 69 (276)
T cd01850 1 KGFQFNIMVVGESGLGKST-----------FINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVID 69 (276)
T ss_pred CCcEEEEEEEcCCCCCHHH-----------HHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEe
Confidence 4789999999999999752 22222332222211 1234444555555666667888999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhhhccCccccccc-ccccchhhh
Q psy91 388 TPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNR-KNIVDNRFA 433 (541)
Q Consensus 388 vi~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~-~~i~d~~v~ 433 (541)
++|++|.++++++|++|++||++||..|+.++....+ ..+.|+++|
T Consensus 70 TpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh 116 (276)
T cd01850 70 TPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVH 116 (276)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceE
Confidence 9999999999999999999999999999988887776 556676665
No 419
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.10 E-value=3.2e-06 Score=81.87 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCcceEEeee----EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-C-c
Q psy91 290 DRKVPNVNDRQGKTTTIEKK----SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-G-K 363 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~----~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~-r 363 (541)
+..+..+|+|++|++.++.. .+. +++++|+|||..|-+..... ++.+.+.+..+. + .
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~------~p~llllDEP~~~LD~~~~~-----------~i~~~l~~~~~~~g~~ 183 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELT------RCPFRVVDEINQGMDPTNER-----------KVFDMLVETACKEGTS 183 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhcc------CCCEEEEecccccCCHHHHH-----------HHHHHHHHHhhcCCCc
Confidence 33456789999987665532 234 78999999998776655443 555666555444 3 4
Q ss_pred ceeeccccch
Q psy91 364 TTTIEKKSMD 373 (541)
Q Consensus 364 t~~i~~~~~d 373 (541)
++++.+|++.
T Consensus 184 ~viiith~~~ 193 (213)
T cd03277 184 QYFLITPKLL 193 (213)
T ss_pred eEEEEchhhc
Confidence 5777777654
No 420
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.10 E-value=8.1e-05 Score=80.06 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=39.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+++.++|.+|+|||||+|+|...+...... ...+........+..+ ...+.++||||..+..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~--------~~gtt~~~~~~~~~~~--~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSD--------IAGTTRDSIDTPFERD--GQKYTLIDTAGIRRKG 235 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecC--------CCCceEEEEEEEEEEC--CeeEEEEECCCCCCCc
Confidence 5789999999999999999998765221111 1112222222222233 3567899999987653
No 421
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.07 E-value=7.5e-06 Score=78.16 Aligned_cols=64 Identities=30% Similarity=0.453 Sum_probs=41.4
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
++++++|.+|+||||++|+|++......... ..+..+.+......+. ..++.|+||||+++...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~---~~~~T~~~~~~~~~~~------~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS---ASSVTKTCQKESAVWD------GRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC---CCCcccccceeeEEEC------CeEEEEEECcCCCCccC
Confidence 3689999999999999999998764321110 0112222222222222 45899999999998754
No 422
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.01 E-value=2.6e-05 Score=88.91 Aligned_cols=61 Identities=33% Similarity=0.395 Sum_probs=37.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.++.++|.+++|||||+|.|....... . +.. ..++..+.....+-++ ..+.++||||+...
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~i---v---~~~--pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~ 336 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAV---V---EDT--PGVTRDRVSYDAEWAG--TDFKLVDTGGWEAD 336 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee---e---cCC--CCeeEEEEEEEEEECC--EEEEEEeCCCcCCC
Confidence 468999999999999999998653110 0 111 1122222222222233 46788999998753
No 423
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.96 E-value=3.3e-05 Score=73.83 Aligned_cols=65 Identities=26% Similarity=0.364 Sum_probs=37.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.+.++|.+|+|||||+|+|++........+. .+....+.. ...+. . +....+.++||||+|+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~--~~~~~~t~~--~~~~~--~-~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAP--TGVVETTMK--RTPYP--H-PKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccc--cCccccccC--ceeee--c-CCCCCceEEeCCCCCccc
Confidence 56889999999999999999875421111111 111111111 11111 1 113579999999999753
No 424
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.91 E-value=4.8e-06 Score=76.41 Aligned_cols=64 Identities=30% Similarity=0.460 Sum_probs=34.0
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+.+++|.||+|||||||.|..........+....+.-++|+. .+.++.+ .-.-.|+|||||.+-
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt-~~~l~~l-----~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTT-HRELFPL-----PDGGYIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S---------------SEEEEEE-----TTSEEEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCC-CeeEEec-----CCCcEEEECCCCCcc
Confidence 678899999999999999998754443333333333344433 2333333 224589999998643
No 425
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.90 E-value=1.2e-05 Score=88.72 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=62.9
Q ss_pred cccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccC
Q psy91 283 FLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQG 362 (541)
Q Consensus 283 ~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~ 362 (541)
.+..+-.-++...+|||+.||+.++..+.. .+..-.|.|+|||+.|.-...-. ++.+.|......+
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k---~~tg~TlYiLDEPTTGLH~~Di~-----------kLl~VL~rLvd~G 875 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSK---RSTGKTLYILDEPTTGLHFDDIK-----------KLLEVLHRLVDKG 875 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhh---ccCCCeEEEeCCCCCCCCHHHHH-----------HHHHHHHHHHhCC
Confidence 344434456677899999999999877543 44456899999999997654432 5667777778889
Q ss_pred cceeeccccchhhhhcccceeEEEc
Q psy91 363 KTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 363 rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
.|+++.-|.+|+.. ..=+|||
T Consensus 876 nTViVIEHNLdVIk----~AD~IID 896 (935)
T COG0178 876 NTVIVIEHNLDVIK----TADWIID 896 (935)
T ss_pred CEEEEEecccceEe----ecCEEEE
Confidence 99999999988643 2235565
No 426
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.89 E-value=0.00011 Score=74.47 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=50.4
Q ss_pred CCCeeEeeccc--hh------hhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 240 YSDIGFATLPE--QV------HRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 240 ~~~vG~~~~~~--q~------~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
++-+||...|. |- .+...++--.++|+++|.+|+||||++|+|++........ -...+..... .
T Consensus 8 ~~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~------f~s~t~~~~~--~ 79 (313)
T TIGR00991 8 REWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA------FQSEGLRPMM--V 79 (313)
T ss_pred cceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC------CCCcceeEEE--E
Confidence 45577776665 22 1112233356899999999999999999999876322111 1111111111 1
Q ss_pred EeeecCeeeeEEEEcCCCCCCC
Q psy91 312 DIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
....+ ..++.|+||||+.+.
T Consensus 80 ~~~~~--G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 80 SRTRA--GFTLNIIDTPGLIEG 99 (313)
T ss_pred EEEEC--CeEEEEEECCCCCch
Confidence 11123 467999999999875
No 427
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.88 E-value=1.6e-05 Score=84.45 Aligned_cols=84 Identities=20% Similarity=0.069 Sum_probs=54.1
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.+..++++..|. +..+++.++ .| +|+|||||||||||++|++ .++.|.+...+..|+.+..........
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 4678888888885 456788875 66 9999999999999999954 345666662212344221111111112
Q ss_pred cccccEEEEeCCCc
Q psy91 149 GRQYPWGVVEGSTV 162 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~ 162 (541)
.+++.+++|+|.+.
T Consensus 217 ~r~rtI~vV~qsd~ 230 (450)
T PRK06002 217 NLKKAVAVVATSDE 230 (450)
T ss_pred hhCCeEEEEEcCCC
Confidence 24567899999763
No 428
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.88 E-value=1e-05 Score=98.01 Aligned_cols=86 Identities=8% Similarity=-0.065 Sum_probs=65.2
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
++..+.+..+-..+....+|||+.||+.++..+.. +.....|.|+|||+.|....... ++.+.|+.
T Consensus 1682 ~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~---~~~~~~lyilDEPt~GLh~~d~~-----------~Ll~~l~~ 1747 (1809)
T PRK00635 1682 ALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYL---PPKHPTLFLLDEIATSLDNQQKS-----------ALLVQLRT 1747 (1809)
T ss_pred HHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhc---CCCCCcEEEEcCCCCCCCHHHHH-----------HHHHHHHH
Confidence 44445666655677788999999999999987743 21236899999998887654432 67777888
Q ss_pred hcccCcceeeccccchhhhh
Q psy91 358 ENRQGKTTTIEKKSMDIEER 377 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~ 377 (541)
....+.|+++..|++|+...
T Consensus 1748 L~~~g~tvivieH~~~~i~~ 1767 (1809)
T PRK00635 1748 LVSLGHSVIYIDHDPALLKQ 1767 (1809)
T ss_pred HHhcCCeEEEEeCCHHHHHh
Confidence 88889999999999887653
No 429
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.82 E-value=3.5e-05 Score=66.79 Aligned_cols=62 Identities=29% Similarity=0.462 Sum_probs=37.6
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 336 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~ 336 (541)
++++|.+|+|||||+|.|+...... .+.....|.......+.+ + ...+.++||||+.+....
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~------~~~~~~~T~~~~~~~~~~--~--~~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAK------VSNIPGTTRDPVYGQFEY--N--NKKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSE------ESSSTTSSSSEEEEEEEE--T--TEEEEEEESSSCSSSSHH
T ss_pred EEEECCCCCCHHHHHHHHhcccccc------ccccccceeeeeeeeeee--c--eeeEEEEeCCCCcccchh
Confidence 6899999999999999999754211 111122222221111111 2 455689999999876443
No 430
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.79 E-value=0.00014 Score=68.27 Aligned_cols=62 Identities=26% Similarity=0.404 Sum_probs=40.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
.++++++|.+|+|||||+|.|+...... ..+.....|..+... .++ ..+.++||||+++...
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~-----~~~~~~~~t~~~~~~--~~~-----~~~~liDtpG~~~~~~ 79 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLA-----RTSKTPGRTQLINFF--EVN-----DGFRLVDLPGYGYAKV 79 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcc-----cccCCCCcceEEEEE--EeC-----CcEEEEeCCCCccccC
Confidence 3578999999999999999998764211 112222334333322 221 2689999999987643
No 431
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.76 E-value=3.5e-05 Score=73.11 Aligned_cols=61 Identities=28% Similarity=0.389 Sum_probs=37.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCC--CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDR--KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~--~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+++++|.+|+|||||||+|+.......+ .....|....-|.... .+.+. -.+.|+||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~-----~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI--KIPLG-----NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE--EEecC-----CCCEEEeCcCC
Confidence 37899999999999999999986643321 1112222222333332 22221 16899999996
No 432
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.67 E-value=2.8e-05 Score=59.37 Aligned_cols=17 Identities=41% Similarity=0.858 Sum_probs=16.7
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|.|||||||||||+++
T Consensus 27 li~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 27 LITGPNGSGKSTLLDAI 43 (62)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999999
No 433
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.64 E-value=0.00021 Score=65.02 Aligned_cols=59 Identities=29% Similarity=0.491 Sum_probs=37.1
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
+.++|.+|+|||||+|+|........ .++....+..+.. +.+ ...+.++|+||+|+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~-----~~~~~~~t~~~~~--~~~-----~~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLAR-----TSKTPGKTQLINF--FNV-----NDKFRLVDLPGYGYAKV 60 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceee-----ecCCCCcceeEEE--EEc-----cCeEEEecCCCcccccc
Confidence 57899999999999999985332221 1222222222222 221 22899999999998744
No 434
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.60 E-value=0.00019 Score=78.75 Aligned_cols=64 Identities=30% Similarity=0.505 Sum_probs=42.7
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.++++++|.+|+||||++|+|++...+... .....|..+..... ..+ ...+.|+||||+++..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vs------s~~~~TTr~~ei~~--~id--G~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTD------AFGMGTTSVQEIEG--LVQ--GVKIRVIDTPGLKSSA 180 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcccccccc------CCCCCceEEEEEEE--EEC--CceEEEEECCCCCccc
Confidence 4568999999999999999999987633221 11122333322221 123 3679999999999874
No 435
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.58 E-value=3.7e-05 Score=77.00 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=38.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccccc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSL 167 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~l 167 (541)
.++|+||||||||||+++|++ .+..|++. ++|+.+.. .+. .......+++++|.. +.+..
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~---~~g~~v~~-~d~--~~ei~~~~~~~~q~~-~~~r~ 174 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQLG---LRGKKVGI-VDE--RSEIAGCVNGVPQHD-VGIRT 174 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceEE---ECCEEeec-chh--HHHHHHHhccccccc-ccccc
Confidence 459999999999999999944 56678999 88874321 111 112223456777743 33344
No 436
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.57 E-value=7e-05 Score=72.81 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=64.1
Q ss_pred HHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccc-hhhhhhhhhccceeeEeccCCcchh
Q psy91 200 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGESGLGK 275 (541)
Q Consensus 200 ~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~sg~GK 275 (541)
.+.++|.+||||||+++.++|+..+..+.+...+.........+||++|.+ .++.+|+.+|+.|.+.+.|.+...+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~ 107 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhH
Confidence 356799999999999999999999998887655555456778899999998 9999999999999999888544433
No 437
>PRK12289 GTPase RsgA; Reviewed
Probab=97.52 E-value=0.00012 Score=76.21 Aligned_cols=63 Identities=33% Similarity=0.471 Sum_probs=39.3
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++|.||+|||||||.|..........++...+..++|+. ...++.+..+| .|+||||+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~-~~~l~~l~~g~-----~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTR-HVELFELPNGG-----LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCc-eeEEEECCCCc-----EEEeCCCccc
Confidence 378999999999999999987653333333332333333332 22344433332 7999999963
No 438
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.51 E-value=0.0002 Score=72.26 Aligned_cols=57 Identities=30% Similarity=0.357 Sum_probs=36.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+||||++|+|.......... .. ..|... ..+.+ ...+.|+||||+.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~---~~---g~T~~~--~~~~~-----~~~~~l~DtPG~~ 174 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGN---RP---GVTKGQ--QWIKL-----SDGLELLDTPGIL 174 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCC---CC---Ceecce--EEEEe-----CCCEEEEECCCcc
Confidence 4689999999999999999998654222111 11 112221 22222 2368999999993
No 439
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.51 E-value=0.00038 Score=73.05 Aligned_cols=62 Identities=19% Similarity=0.398 Sum_probs=39.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.+.++|.+++|||||+|.|.+.+..-- .+..| .+.+.....++-+ .-++.++||.|.-..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv---~~~aG-----TTRD~I~~~~e~~--~~~~~liDTAGiRrk 239 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIV---SDIAG-----TTRDSIDIEFERD--GRKYVLIDTAGIRRK 239 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEe---cCCCC-----ccccceeeeEEEC--CeEEEEEECCCCCcc
Confidence 46788999999999999999987763221 11111 2223333333333 356889999988654
No 440
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.51 E-value=0.00012 Score=73.47 Aligned_cols=63 Identities=32% Similarity=0.477 Sum_probs=39.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
...++|.||+|||||||.|..........+..-.+.-++|+. .+.++.+..+| .|+|||||..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt-~~~l~~l~~gG-----~iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTT-HVELFPLPGGG-----WIIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccc-eEEEEEcCCCC-----EEEeCCCCCc
Confidence 456789999999999999987543333333333333444443 33344433344 7999999953
No 441
>PRK12288 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.00013 Score=75.78 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=40.5
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+++|.||+|||||||.|..........++...+..++|+ -.+.++.+..+ ..|+||||+-.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT-~~~~l~~l~~~-----~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTT-TAARLYHFPHG-----GDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCce-eeEEEEEecCC-----CEEEECCCCCc
Confidence 46899999999999999998765444333333333334433 23444444333 35999999864
No 442
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.48 E-value=6.8e-05 Score=70.96 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q psy91 102 LMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
++|+||||||||||+++|++..
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 3899999999999999996543
No 443
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.48 E-value=0.0002 Score=70.99 Aligned_cols=62 Identities=29% Similarity=0.398 Sum_probs=38.8
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+++|.||+|||||||.|..........++..++..+.|+ ....++.+ .+| .|+||||+-.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT-~~~~l~~l-~~~-----~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTT-THVELFHF-HGG-----LIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcC-CceEEEEc-CCc-----EEEeCCCccc
Confidence 57899999999999999998765333333333233223322 22333443 233 7999999964
No 444
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.45 E-value=9e-05 Score=71.96 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=42.9
Q ss_pred cceeecceEEE-----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccc
Q psy91 92 KSVKKGFDFTL-----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPS 166 (541)
Q Consensus 92 ~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~ 166 (541)
..+.+++++++ +|+|||||||||||+++++...-| ..|. ........++++.| ++++
T Consensus 18 ~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~------~~g~---------~vp~~~~~i~~~~~---i~~~ 79 (216)
T cd03284 18 PFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLA------QIGS---------FVPASKAEIGVVDR---IFTR 79 (216)
T ss_pred ceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHh------ccCC---------eeccccceecceee---Eecc
Confidence 34777777764 999999999999999994321110 1122 11122335666654 5677
Q ss_pred cccccCCCcccceecc
Q psy91 167 LIGSLFQTDRDYIGFA 182 (541)
Q Consensus 167 lig~~~qtv~e~l~~~ 182 (541)
+ ++.+++..+
T Consensus 80 ~------~~~~~ls~g 89 (216)
T cd03284 80 I------GASDDLAGG 89 (216)
T ss_pred C------CchhhhccC
Confidence 7 888888766
No 445
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.45 E-value=0.00018 Score=64.88 Aligned_cols=55 Identities=31% Similarity=0.480 Sum_probs=35.7
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++|.+|+||||++|+|....... .+.....+.... .+.+ ...+.|+||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~------~~~~~~~~~~~~--~~~~-----~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS------VSATPGKTKHFQ--TIFL-----TPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee------eCCCCCcccceE--EEEe-----CCCEEEEECCCcC
Confidence 78999999999999999998765321 111122222222 2222 1268999999985
No 446
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.39 E-value=0.00046 Score=62.88 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=39.8
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.+.++|.+|+|||||+|+|..... ... ...+.........+..++...++.++|+||.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF-DNQ--------YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-Ccc--------CCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 3688999999999999999987652 211 1122333333333344566788999999985
No 447
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.36 E-value=0.00097 Score=76.18 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=36.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.++.++|.+|+|||||+|.|...+... +.. -...|.......+. -+| .++.++||||....
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~---v~~---~~gtT~d~~~~~~~--~~~--~~~~liDTaG~~~~ 511 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAV---VND---LAGTTRDPVDEIVE--IDG--EDWLFIDTAGIKRR 511 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccc---cCC---CCCCCcCcceeEEE--ECC--CEEEEEECCCcccC
Confidence 689999999999999999998765211 011 11112222222222 233 34678999998643
No 448
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.36 E-value=3e-05 Score=71.83 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.4
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 105 VGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 105 iGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
||+||||||||+++|++.. |.++ ++|.
T Consensus 1 ~G~sGsGKSTla~~la~~l--~~~~---~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL--HAAF---LDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh--CCeE---EeCc
Confidence 6999999999999995543 5566 6665
No 449
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.35 E-value=7.1e-05 Score=70.41 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=67.8
Q ss_pred EeccCCcchhHHHHhhhccc----ccC----------C-------------------------CCCCCCCCCCCCcceEE
Q psy91 266 MVVGESGLGKSTLVNSLFLS----DLY----------G-------------------------DRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 266 mv~G~sg~GKsT~in~L~~~----~~~----------~-------------------------~~~~~~ls~g~~q~v~I 306 (541)
+++|++|+|||+++..++.. ... . ....+-+|+|+++++.+
T Consensus 26 ~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r~~L 105 (178)
T cd03239 26 AIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSLSAL 105 (178)
T ss_pred EEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHHHHH
Confidence 48899999999999997321 000 0 00011257788888888
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++... --+++++++|||..|-+..+.. .+.+.|.+..+.+.++++.+|+.++.. ...++..|
T Consensus 106 aral~~~~--~~~p~llilDEp~~~LD~~~~~-----------~i~~~L~~~~~~g~tiIiiSH~~~~~~--~adrvi~i 170 (178)
T cd03239 106 ALIFALQE--IKPSPFYVLDEIDAALDPTNRR-----------RVSDMIKEMAKHTSQFIVITLKKEMFE--NADKLIGV 170 (178)
T ss_pred HHHHHHhc--CCCCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEECCHHHHh--hCCeEEEE
Confidence 77653100 0168999999997776555443 455556555444678889999876543 45566555
Q ss_pred cC
Q psy91 387 DT 388 (541)
Q Consensus 387 pv 388 (541)
..
T Consensus 171 ~~ 172 (178)
T cd03239 171 LF 172 (178)
T ss_pred EE
Confidence 43
No 450
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.35 E-value=4.2e-05 Score=71.80 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=22.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
+|+||||||||||+++|++.... +. ++|.
T Consensus 7 ~l~G~sGsGKSTl~~~la~~l~~--~~---i~gd 35 (176)
T PRK09825 7 ILMGVSGSGKSLIGSKIAALFSA--KF---IDGD 35 (176)
T ss_pred EEECCCCCCHHHHHHHHHHhcCC--EE---ECCc
Confidence 89999999999999999654332 45 6666
No 451
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.33 E-value=0.00059 Score=61.26 Aligned_cols=59 Identities=29% Similarity=0.487 Sum_probs=41.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
++++++|.+|+|||||+|.|+....... ...+.........+.-.+....+.++|+||.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 59 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN---------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ 59 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc---------cCCceeeeeEEEEEEECCEEEEEEEEecCCh
Confidence 4689999999999999999987653221 1223344444444444456788999999996
No 452
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.32 E-value=0.00031 Score=64.46 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.++++++|.+|+|||||+|+|....
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4688999999999999999998654
No 453
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.32 E-value=0.00093 Score=60.48 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=37.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
+.+.++|.+|+|||||+|.|.......... ....+........ ......+.++||||+++...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~liDtpG~~~~~~ 66 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSP------KPQTTRNRIRGIY----TDDDAQIIFVDTPGIHKPKK 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccC------CCCceeceEEEEE----EcCCeEEEEEECCCCCcchH
Confidence 568899999999999999998654211110 0011111111111 11146799999999986543
No 454
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.31 E-value=4.4e-05 Score=70.63 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=64.0
Q ss_pred eEeccCCcchhHHHHhhhcccccCCC-----------------------CCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGD-----------------------RKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~-----------------------~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
..++|.+|.|||++++++........ .....+|+|+++++.+++++..... -++.
T Consensus 24 ~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~--~~~~ 101 (162)
T cd03227 24 TIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASL--KPRP 101 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCC--CCCC
Confidence 57899999999999999643211111 0112467788888888776642100 1579
Q ss_pred EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 322 LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 322 L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++++|||+.|-+..... .+.+.+.+..+.+.++++.+|+.++..
T Consensus 102 llllDEp~~gld~~~~~-----------~l~~~l~~~~~~~~~vii~TH~~~~~~ 145 (162)
T cd03227 102 LYILDEIDRGLDPRDGQ-----------ALAEAILEHLVKGAQVIVITHLPELAE 145 (162)
T ss_pred EEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 99999998887655543 233333333222678888999888765
No 455
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.30 E-value=0.00069 Score=61.74 Aligned_cols=59 Identities=29% Similarity=0.554 Sum_probs=40.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.++++|++|+|||||++.|..... .. ....++........+.-++...++.++|+||.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SE--------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CC--------CCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 4689999999999999999986652 11 11223333333334444565678999999994
No 456
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.29 E-value=0.00067 Score=62.32 Aligned_cols=60 Identities=27% Similarity=0.536 Sum_probs=38.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|+++++|.+|+|||||+++|.... +... ...+..+......+.-++....+.|+|+||.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~-~~~~--------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT-FSER--------QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-Cccc--------CCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 4789999999999999999986543 2111 1122222222223333555678999999994
No 457
>COG1159 Era GTPase [General function prediction only]
Probab=97.27 E-value=0.00053 Score=68.27 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=37.9
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+.++|++++|||||+|.|.+..+.-- |...+.|-...+..+. .+ +.+++++||||+-..
T Consensus 9 VaIiGrPNvGKSTLlN~l~G~KisIv------S~k~QTTR~~I~GI~t---~~-~~QiIfvDTPGih~p 67 (298)
T COG1159 9 VAIIGRPNVGKSTLLNALVGQKISIV------SPKPQTTRNRIRGIVT---TD-NAQIIFVDTPGIHKP 67 (298)
T ss_pred EEEEcCCCCcHHHHHHHHhcCceEee------cCCcchhhhheeEEEE---cC-CceEEEEeCCCCCCc
Confidence 45799999999999999998874321 2111111111111111 11 789999999999766
No 458
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.27 E-value=0.00071 Score=61.78 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=40.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+++.++|.+|+|||||+|+|+..... ... ..++.+......+.-+|....+.++||||.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKY--------LPTIGIDYGVKKVSVRNKEVRVNFFDLSGH 59 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCC--------CCccceeEEEEEEEECCeEEEEEEEECCcc
Confidence 36889999999999999999876532 111 123333332223334466889999999996
No 459
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.24 E-value=0.00025 Score=69.77 Aligned_cols=66 Identities=30% Similarity=0.472 Sum_probs=39.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccch
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~ 337 (541)
..|++++|.+|+|||++||.||..+...-...+. + +.+...... .-+ .-.|+|.|+||+||.....
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~---~----t~~~~~~~~-~~~--~~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV---G----TDITTRLRL-SYD--GENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeeccc---C----CCchhhHHh-hcc--ccceEEecCCCcccchhhh
Confidence 3588999999999999999999654222111110 1 111111100 001 2468999999999976554
No 460
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.23 E-value=0.00087 Score=61.42 Aligned_cols=60 Identities=27% Similarity=0.449 Sum_probs=40.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.++++|.+|+|||||++.|........ . ..+.........+.-+|...++.++|+||.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 62 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD-S--------KSTIGVEFATRSIQIDGKTIKAQIWDTAGQ 62 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-C--------CCccceEEEEEEEEECCEEEEEEEEeCCCh
Confidence 36899999999999999999986552211 1 122223223333444566788999999984
No 461
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.23 E-value=0.00033 Score=66.31 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=22.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 102 LMVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
++|+||||||||||+++|++ .+..|.|.
T Consensus 28 i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ 57 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFIPPDERIIT 57 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 49999999999999999944 34455555
No 462
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.20 E-value=0.00042 Score=72.46 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCCceeeecccccccc-cceee-----------cceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 76 DRDYIGFATLPEQVHR-KSVKK-----------GFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~-~~iL~-----------~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
....+.|++|++.|++ +.+|. |+.+.| +|+||+|||||||++.|+.
T Consensus 127 ~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~ 190 (415)
T TIGR00767 127 AKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQ 190 (415)
T ss_pred cCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHH
Confidence 3457999999999975 45786 777777 9999999999999999944
No 463
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.18 E-value=0.001 Score=60.66 Aligned_cols=60 Identities=20% Similarity=0.414 Sum_probs=38.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
++.++++|.+|+|||||+|+|.......... ......+.... +.-++...++.|+|+||.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------~t~~~~~~~~~--v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQE-------STIGAAFLTQT--VNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCC-------CccceeEEEEE--EEECCEEEEEEEEeCCch
Confidence 3679999999999999999998766322111 11111122222 223455788999999984
No 464
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.18 E-value=0.0011 Score=62.54 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
-.++.++|.+|+|||||+|+|+....... .+.....+..+... . +..++.|+||||++...
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~-----~~~~~~~t~~~~~~--~-----~~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLAR-----TSKTPGRTQLINFF--E-----VNDKLRLVDLPGYGYAK 84 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCccc-----ccCCCCceeEEEEE--e-----cCCeEEEeCCCCCCCcC
Confidence 35789999999999999999987542211 11112223222221 1 13689999999988643
No 465
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.18 E-value=0.00084 Score=62.67 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=37.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCC-------CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN-------VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~-------ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+++++|..|+|||||+|.|............. ......+.+.+......++-. ...+.++||||..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHH
Confidence 47899999999999999998765322111000 000011122222222222222 56899999999763
No 466
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.17 E-value=0.0011 Score=60.98 Aligned_cols=59 Identities=31% Similarity=0.441 Sum_probs=38.5
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
|+++++|.+|+|||||++.+..... .... ..+..+......+.-+|...++.|+|+||.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESY--------ISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 61 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCC--------CCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 6899999999999999999976542 1111 112222222222333466788999999994
No 467
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.16 E-value=0.0011 Score=61.06 Aligned_cols=59 Identities=20% Similarity=0.391 Sum_probs=37.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
|.++++|.+|+|||||+|+|..... ... ...++........+.-++....+.++|+||.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~--------~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQ--------YKATIGADFLTKEVTVDDKLVTLQIWDTAGQ 59 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcC--------cCCccceEEEEEEEEECCEEEEEEEEeCCCh
Confidence 4789999999999999999986542 111 1122221111122333455778999999985
No 468
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.16 E-value=0.0012 Score=61.09 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=39.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||++.+........ . ..+.........+.-++....+.|+|+||.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-H--------DLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-C--------CCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 47899999999999999999876542111 1 112222222233344555678999999993
No 469
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.16 E-value=0.00076 Score=70.67 Aligned_cols=63 Identities=27% Similarity=0.345 Sum_probs=40.4
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
-+++++|.+|+|||||||+|........ .....|.....|..+.... + .-.+.|+||||+...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~-~~~~~s~~pgtT~~~~~~~--~-----~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK-DVITTSPFPGTTLDLIEIP--L-----DDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc-ceeeecCCCCeEeeEEEEE--e-----CCCCEEEECCCCCCh
Confidence 3789999999999999999987542211 1223343344444433222 1 124689999999864
No 470
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.15 E-value=0.00058 Score=63.85 Aligned_cols=56 Identities=30% Similarity=0.482 Sum_probs=36.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.++++|.+++|||||+|.|........ +.....|...... .+ ...+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~------~~~pg~T~~~~~~--~~-----~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV------GATPGVTKSMQEV--HL-----DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee------cCCCCeEcceEEE--Ee-----CCCEEEEECcCC
Confidence 36899999999999999999987652221 1112223222222 11 246899999995
No 471
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.15 E-value=0.0012 Score=60.23 Aligned_cols=59 Identities=29% Similarity=0.474 Sum_probs=38.3
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
++++++|.+|+|||||++.|..... .... ..+.........+.-++...++.++|+||.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~ 59 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KEDS--------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCC--------CCceeeeEEEEEEEECCEEEEEEEEECcch
Confidence 4789999999999999999976542 1111 122222222222333455788999999985
No 472
>KOG0062|consensus
Probab=97.14 E-value=0.00028 Score=74.64 Aligned_cols=106 Identities=17% Similarity=0.017 Sum_probs=69.3
Q ss_pred CCCCceeeecccccccccc--eeecceEEE------EEEcCCCCCHHHHHHHHhcCC--CCCCeeecccCCccceecccc
Q psy91 75 TDRDYIGFATLPEQVHRKS--VKKGFDFTL------MVVGESGLGKSTLVNSLFLSD--LYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 75 ~~~~~i~~~~l~~~~~~~~--iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~--~~G~i~~~~~~G~~~~~~~~~ 144 (541)
...|.+++..|++.|.... ++.++++.+ +++|+||+||||+++++.+.. ..|-+.
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~--------------- 422 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVG--------------- 422 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceee---------------
Confidence 3456899999999997554 889888877 999999999999999995532 332221
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCC
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESG 208 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g 208 (541)
...+.+++|.+|...-+-.+ +|...-.+.+...+. ..+.+...+..+|+++
T Consensus 423 ---~~~r~ri~~f~Qhhvd~l~~------~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g 473 (582)
T KOG0062|consen 423 ---RHPRLRIKYFAQHHVDFLDK------NVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSG 473 (582)
T ss_pred ---ecccceecchhHhhhhHHHH------HhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCc
Confidence 13345689999986655444 443221222111122 3344556788888877
No 473
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.14 E-value=0.00097 Score=60.06 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=38.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
+.+.++|.+|+|||||+|+|+.......... ...+..+....+. .. ..++.++||||+++...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~------~~~~~~~~~~~~~--~~--~~~~~i~DtpG~~~~~~ 64 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDI------AGTTRDVIEESID--IG--GIPVRLIDTAGIRETED 64 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCC------CCCccceEEEEEE--eC--CEEEEEEECCCcCCCcc
Confidence 3688999999999999999987652111111 1112222222222 12 35789999999986543
No 474
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.13 E-value=0.00022 Score=75.78 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=48.2
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeee--cccCCccceecccc-c-ccccccccEEEEeCCC
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKV--PNVNGSNTVIEVAG-T-KVRGRQYPWGVVEGST 161 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~--~~~~G~~~~~~~~~-~-~~~~~~~~~g~V~Q~~ 161 (541)
..+++++ +.+ +|+|+||||||||+++|++......+.+ .+..|..+...... . .....+..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4589999 888 9999999999999999966443322110 00222211000000 0 0011233578889988
Q ss_pred ccccccccccCCCccccee
Q psy91 162 VLTPSLIGSLFQTDRDYIG 180 (541)
Q Consensus 162 ~l~~~lig~~~qtv~e~l~ 180 (541)
..+..+ ++.++..
T Consensus 222 s~~~rl------~a~e~a~ 234 (434)
T PRK07196 222 SPLMRI------KATELCH 234 (434)
T ss_pred ChhhhH------HHHHHHH
Confidence 887777 6665543
No 475
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.13 E-value=0.0014 Score=58.53 Aligned_cols=59 Identities=31% Similarity=0.457 Sum_probs=39.2
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+++.++|.+|+|||||+|.|.... ..... ..++........+..++....+.++|+||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY--------KPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC--------CCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 578999999999999999998765 22211 112222222222334555588999999994
No 476
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.12 E-value=0.00038 Score=66.64 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=29.1
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhh-hhhhhhcccCcceeeccccchhh
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFR-QYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~-~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+++++++|||+.|-+..... .+. ..+.+..+.+.++++.+|..++.
T Consensus 108 ~p~llllDEp~~glD~~~~~-----------~i~~~~l~~l~~~~~~vi~~tH~~~l~ 154 (200)
T cd03280 108 PDSLVLLDELGSGTDPVEGA-----------ALAIAILEELLERGALVIATTHYGELK 154 (200)
T ss_pred CCcEEEEcCCCCCCCHHHHH-----------HHHHHHHHHHHhcCCEEEEECCHHHHH
Confidence 68899999998886654432 221 22333333467888899875543
No 477
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.10 E-value=0.00045 Score=66.46 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.5
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHh
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~ 120 (541)
...+++++++++ +|+|||||||||||+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHH
Confidence 356889999877 999999999999999994
No 478
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.06 E-value=0.0011 Score=60.80 Aligned_cols=58 Identities=34% Similarity=0.403 Sum_probs=36.1
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+++++|.+|+||||++|.|...... .. .....+..+....+. .+ ..++.|+||||+.+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~-~~------~~~~~t~~~~~~~~~--~~--~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE-VA------PYPFTTKSLFVGHFD--YK--YLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc-cC------CCCCcccceeEEEEc--cC--ceEEEEEECCCcCC
Confidence 5789999999999999999876421 10 001112222221111 11 46899999999865
No 479
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.06 E-value=0.0016 Score=60.09 Aligned_cols=60 Identities=30% Similarity=0.514 Sum_probs=41.5
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
|.++++|.+|+|||||++.+.... +... ...+..+......+..++-...+.++||||-.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~--------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE-FEKK--------YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCC--------CCCceeeEEEEEEEEECCEEEEEEEEECCCCh
Confidence 468999999999999999987543 2211 12344444444444556667899999999853
No 480
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.06 E-value=0.002 Score=61.44 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=40.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCC--C-----CCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYG--D-----RKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~--~-----~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++.++|..+.|||||++.|....... . ...........+..++..+....+.+ +.+++++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--~~~i~~iDtPG~~ 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--NRHYAHVDCPGHA 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--CeEEEEEECcCHH
Confidence 3578999999999999999997531000 0 00111111223344555554444433 4578999999985
No 481
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.00012 Score=73.04 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=57.3
Q ss_pred HHHHhCCCCccchhhhhhhccccccCCCCcCCCCC---C---CCCCCCCeeEeeccc-hhhhhhhhhccceeeEec
Q psy91 200 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNE---K---GSIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVV 268 (541)
Q Consensus 200 ~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~---~---~~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~ 268 (541)
+++++|.+|+||||++.+|+|++.++.+.|..-+. . .....+.|||++|.+ +++..+|.+|+.|.+-+.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence 57789999999999999999999998887643222 1 145667899999999 999999999999988665
No 482
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.00024 Score=72.83 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=57.8
Q ss_pred HHHHhCCCCccchhhhhhhccccccCCCCcCCCCCCC---CCCCCCeeEeeccc-hhhhhhhhhccceeeEeccC
Q psy91 200 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKG---SIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGE 270 (541)
Q Consensus 200 ~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~---~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~ 270 (541)
.+.++|.+||||||+++.|+|++.+.++.|..-+... .-..+.||+++|++ .++.+||.+|+.|++.+.|.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~ 105 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV 105 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC
Confidence 3567999999999999999999998888764333222 22357899999999 88999999999999888765
No 483
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.03 E-value=0.0019 Score=59.21 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=37.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.++++|.+|+|||||++++.... +.... ..+.........+.-++....+.++||||.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 59 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG-YEPQQ--------LSTYALTLYKHNAKFEGKTILVDFWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCc--------CCceeeEEEEEEEEECCEEEEEEEEeCCCc
Confidence 368999999999999999988654 22111 122222222222223455788999999985
No 484
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.03 E-value=0.0015 Score=60.16 Aligned_cols=60 Identities=33% Similarity=0.476 Sum_probs=39.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||++.+..... ..... .+..+......+.-+|....+.++|+||-
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~--------~t~~~~~~~~~~~~~~~~~~l~l~D~~g~ 62 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFI--------STIGIDFKIRTIELDGKKIKLQIWDTAGQ 62 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-Ccccc--------cCccceEEEEEEEECCEEEEEEEEeCCch
Confidence 47899999999999999999986552 22111 12222222222334556789999999984
No 485
>PRK04213 GTP-binding protein; Provisional
Probab=97.02 E-value=0.0011 Score=63.10 Aligned_cols=58 Identities=29% Similarity=0.337 Sum_probs=37.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+.++++|.+|+||||++|.|.... +... ....+.+....+.+ . .+.++||||+|+..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~--------~~~~~t~~~~~~~~-----~-~~~l~Dt~G~~~~~ 66 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVG--------KRPGVTRKPNHYDW-----G-DFILTDLPGFGFMS 66 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccC--------CCCceeeCceEEee-----c-ceEEEeCCcccccc
Confidence 4679999999999999999998654 2111 11122322222221 1 68999999997643
No 486
>PRK00089 era GTPase Era; Reviewed
Probab=97.01 E-value=0.0027 Score=64.49 Aligned_cols=60 Identities=30% Similarity=0.424 Sum_probs=36.3
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.++|.+|+|||||+|.|.+.........+ +..+..+... ...+ ..++.++||||+.+..
T Consensus 8 V~iiG~pn~GKSTLin~L~g~~~~~vs~~~-----~tt~~~i~~i---~~~~--~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 8 VAIVGRPNVGKSTLLNALVGQKISIVSPKP-----QTTRHRIRGI---VTED--DAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEECCCCCCHHHHHHHHhCCceeecCCCC-----CcccccEEEE---EEcC--CceEEEEECCCCCCch
Confidence 688999999999999999876532111100 0011111111 1111 3789999999997644
No 487
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.00 E-value=0.00046 Score=66.20 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=30.0
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhh-hhhhhhhcccCcceeeccccchhhh
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQF-RQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~-~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++.++|+|||+.|-+..... .+ ..++....+.+.++++.+|+.++..
T Consensus 108 ~~~llllDEp~~gld~~~~~-----------~l~~~ll~~l~~~~~~vi~~tH~~~~~~ 155 (202)
T cd03243 108 PRSLVLIDELGRGTSTAEGL-----------AIAYAVLEHLLEKGCRTLFATHFHELAD 155 (202)
T ss_pred CCeEEEEecCCCCCCHHHHH-----------HHHHHHHHHHHhcCCeEEEECChHHHHH
Confidence 58899999998876654332 11 1222222334677888999877665
No 488
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.00 E-value=0.0022 Score=58.95 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=38.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
|.++++|.+|+|||||+++|..... ..... .++.+......+.-++....+.++|+||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFV--------STVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCC--------CceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 6799999999999999999876542 11111 122222222223334556889999999853
No 489
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.99 E-value=0.0008 Score=81.14 Aligned_cols=17 Identities=41% Similarity=0.782 Sum_probs=16.5
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||||.+|
T Consensus 27 ~i~G~NGsGKS~ll~ai 43 (1179)
T TIGR02168 27 GIVGPNGCGKSNIVDAI 43 (1179)
T ss_pred EEECCCCCChhHHHHHH
Confidence 99999999999999987
No 490
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.99 E-value=0.00016 Score=69.24 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=17.7
Q ss_pred eEeccCCcchhHHHHhhhc
Q psy91 265 LMVVGESGLGKSTLVNSLF 283 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~ 283 (541)
+.+.|++|.|||||++++.
T Consensus 31 ~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 31 LVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 6789999999999999987
No 491
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.96 E-value=0.0021 Score=58.26 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=36.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+++.++|.+|+|||||+|+|+...... ...+ ..+..+.... +.-.+....+.++|+||.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~------~~~~~~~~~~--~~~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHES------TTQASFFQKT--VNIGGKRIDLAIWDTAGQ 59 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCC------ccceeEEEEE--EEECCEEEEEEEEECCch
Confidence 478999999999999999999765321 1100 0111111222 222355678999999983
No 492
>PRK00098 GTPase RsgA; Reviewed
Probab=96.95 E-value=0.0014 Score=66.77 Aligned_cols=62 Identities=31% Similarity=0.423 Sum_probs=36.2
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++|.||+|||||+|.|..........++...+..+.|. -....+.+.. ...|+||||+-
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT-~~~~~~~~~~-----~~~~~DtpG~~ 227 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTT-THVELYDLPG-----GGLLIDTPGFS 227 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCccc-ccEEEEEcCC-----CcEEEECCCcC
Confidence 57899999999999999998654322222222111222222 1222333222 24899999986
No 493
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.95 E-value=0.0025 Score=58.93 Aligned_cols=59 Identities=24% Similarity=0.505 Sum_probs=39.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
++++++|.+|+|||||++.+.... +... ...++.+......+.-+|....+.|+|+||.
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 61 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPER--------TEATIGVDFRERTVEIDGERIKVQLWDTAGQ 61 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCc--------cccceeEEEEEEEEEECCeEEEEEEEeCCCh
Confidence 679999999999999999997654 2211 1122333222222333555788999999985
No 494
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.94 E-value=0.002 Score=58.65 Aligned_cols=59 Identities=27% Similarity=0.445 Sum_probs=37.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+.++++|.+|+|||||+|.|........ .. .+.........+.-++....+.++|+||.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 59 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD-LA--------ATIGVDFKVKTLTVDGKKVKLAIWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-cC--------CcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 4689999999999999999986542111 11 11111111112222345678999999994
No 495
>PRK08149 ATP synthase SpaL; Validated
Probab=96.94 E-value=0.00077 Score=71.51 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=27.7
Q ss_pred ccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCC
Q psy91 91 RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDL 124 (541)
Q Consensus 91 ~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~ 124 (541)
+..+++++ +.+ +|+|+||+||||||++|++...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence 34688999 888 9999999999999999965443
No 496
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.94 E-value=0.0026 Score=57.88 Aligned_cols=58 Identities=26% Similarity=0.389 Sum_probs=38.8
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE--EeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT--IEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~--I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++|.+|+|||||++.|.......+ ...++. +....+.+...+...++.|+|+||.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD---------YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC---------CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 688999999999999999986542211 112322 2223334443466789999999983
No 497
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.93 E-value=0.0025 Score=58.54 Aligned_cols=60 Identities=28% Similarity=0.409 Sum_probs=38.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.|.+.++|.+|+|||||++.+....+ ....+ .++........+.-++...++.|+|+||.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 61 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKF-MADCP--------HTIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CCCCC--------cccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 36889999999999999999986542 22111 12222222222233556788999999984
No 498
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.92 E-value=0.0014 Score=59.99 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=35.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..+++++|.+|+||||++|.|....... .+.+..-|..... +.+ ...+.++||||+
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~------~~~~~~~t~~~~~--~~~-----~~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLK------VGNVPGTTTSQQE--VKL-----DNKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHcccccc------ccCCCCcccceEE--EEe-----cCCEEEEECCCC
Confidence 4578999999999999999998754222 1222222222221 111 356999999995
No 499
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.91 E-value=0.00086 Score=61.98 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.++|+||+|||||||++.|.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456799999999999999999654
No 500
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.91 E-value=0.003 Score=58.20 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=40.4
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
+..+.++++|.+|+|||||++.+..... .... ..++........+.-++...++.|+|+||.
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKF-DTQL--------FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCC-CcCc--------CCceeeEEEEEEEEECCeEEEEEEEeCCCh
Confidence 3457899999999999999999875442 1111 122222222223334566788999999984
Done!