Query psy91
Match_columns 541
No_of_seqs 676 out of 4638
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:53:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy91.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/91hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qag_A Septin-2, protein NEDD5 100.0 1.9E-41 6.3E-46 352.5 10.0 290 238-539 13-345 (361)
2 2qag_B Septin-6, protein NEDD5 100.0 1.2E-39 4.2E-44 341.6 14.3 292 242-539 22-381 (427)
3 2qag_C Septin-7; cell cycle, c 100.0 5.3E-37 1.8E-41 323.0 14.5 297 241-538 10-376 (418)
4 3sop_A Neuronal-specific septi 100.0 4E-36 1.4E-40 299.9 11.8 227 261-487 1-270 (270)
5 3t5d_A Septin-7; GTP-binding p 100.0 3E-35 1E-39 294.6 14.0 232 257-489 3-274 (274)
6 2qnr_A Septin-2, protein NEDD5 100.0 2.8E-33 9.6E-38 283.9 12.7 245 248-493 4-291 (301)
7 3fvq_A Fe(3+) IONS import ATP- 99.9 1.6E-28 5.4E-33 252.7 5.5 202 78-387 3-213 (359)
8 3rlf_A Maltose/maltodextrin im 99.9 3.5E-28 1.2E-32 251.8 4.6 197 79-387 3-208 (381)
9 3tui_C Methionine import ATP-b 99.9 4.6E-28 1.6E-32 249.4 4.6 205 76-387 21-238 (366)
10 2pcj_A ABC transporter, lipopr 99.9 4.9E-28 1.7E-32 235.0 3.0 201 78-386 3-212 (224)
11 1v43_A Sugar-binding transport 99.9 5E-27 1.7E-31 243.3 7.8 197 79-387 11-216 (372)
12 3tif_A Uncharacterized ABC tra 99.9 1.2E-27 4E-32 234.0 2.2 201 80-387 2-219 (235)
13 2olj_A Amino acid ABC transpor 99.9 2.2E-27 7.6E-32 235.5 4.1 202 78-387 23-233 (263)
14 2yyz_A Sugar ABC transporter, 99.9 3.6E-27 1.2E-31 243.2 5.5 197 79-387 3-208 (359)
15 1z47_A CYSA, putative ABC-tran 99.9 2.4E-27 8.1E-32 244.0 4.1 200 76-387 11-220 (355)
16 1oxx_K GLCV, glucose, ABC tran 99.9 4.2E-27 1.4E-31 242.8 4.6 202 79-387 3-215 (353)
17 1g29_1 MALK, maltose transport 99.9 4.5E-27 1.5E-31 244.0 4.8 203 79-387 3-214 (372)
18 3gfo_A Cobalt import ATP-bindi 99.9 2.4E-27 8.2E-32 236.6 2.4 202 78-387 6-218 (275)
19 2it1_A 362AA long hypothetical 99.9 3.8E-27 1.3E-31 243.3 3.6 197 79-387 3-208 (362)
20 1b0u_A Histidine permease; ABC 99.9 4.5E-27 1.5E-31 233.5 2.3 204 79-387 6-227 (262)
21 1vpl_A ABC transporter, ATP-bi 99.9 6.7E-27 2.3E-31 231.2 2.7 200 77-387 13-220 (256)
22 1g6h_A High-affinity branched- 99.9 8.5E-27 2.9E-31 231.0 3.3 200 78-387 6-227 (257)
23 1ji0_A ABC transporter; ATP bi 99.9 2.2E-26 7.4E-31 225.7 3.6 199 78-387 5-213 (240)
24 4g1u_C Hemin import ATP-bindin 99.9 3.9E-26 1.3E-30 227.1 4.8 204 78-387 10-222 (266)
25 3d31_A Sulfate/molybdate ABC t 99.9 1.9E-26 6.5E-31 237.1 1.4 192 80-387 2-202 (348)
26 2ihy_A ABC transporter, ATP-bi 99.9 7.9E-26 2.7E-30 226.3 1.9 202 78-387 20-237 (279)
27 1sgw_A Putative ABC transporte 99.9 1.4E-25 4.9E-30 215.7 2.7 180 78-375 9-196 (214)
28 2zu0_C Probable ATP-dependent 99.9 4.3E-25 1.5E-29 219.8 5.6 202 78-387 19-239 (267)
29 2yz2_A Putative ABC transporte 99.9 2.7E-25 9.4E-30 221.2 3.7 195 79-387 2-212 (266)
30 2ff7_A Alpha-hemolysin translo 99.9 5.6E-25 1.9E-29 216.5 5.0 201 79-387 7-217 (247)
31 2d2e_A SUFC protein; ABC-ATPas 99.9 2.3E-25 8E-30 219.7 2.0 199 79-387 3-218 (250)
32 2onk_A Molybdate/tungstate ABC 99.9 2.8E-25 9.6E-30 217.6 2.5 192 80-387 2-201 (240)
33 2ixe_A Antigen peptide transpo 99.9 8.8E-25 3E-29 218.0 4.7 203 77-387 14-230 (271)
34 1mv5_A LMRA, multidrug resista 99.9 2E-24 6.9E-29 212.1 6.7 201 80-387 2-211 (243)
35 2nq2_C Hypothetical ABC transp 99.9 1.5E-24 5.1E-29 214.2 4.4 188 79-387 4-203 (253)
36 3nh6_A ATP-binding cassette SU 99.9 9.1E-25 3.1E-29 220.9 2.7 203 77-387 51-262 (306)
37 2qi9_C Vitamin B12 import ATP- 99.9 2.2E-24 7.5E-29 212.3 2.8 189 79-387 4-207 (249)
38 2ghi_A Transport protein; mult 99.9 2.3E-23 8E-28 206.5 4.9 202 78-387 16-227 (260)
39 3gd7_A Fusion complex of cysti 99.9 6.7E-24 2.3E-28 221.2 -0.5 201 78-387 18-227 (390)
40 2pjz_A Hypothetical protein ST 99.9 6.7E-23 2.3E-27 203.2 1.6 186 80-387 2-200 (263)
41 2pze_A Cystic fibrosis transme 99.8 4.4E-22 1.5E-26 193.7 5.4 188 77-387 4-203 (229)
42 3b5x_A Lipid A export ATP-bind 99.8 6E-22 2.1E-26 218.3 6.3 203 78-387 340-552 (582)
43 3b60_A Lipid A export ATP-bind 99.8 5.4E-22 1.9E-26 218.6 4.5 203 78-387 340-552 (582)
44 2cbz_A Multidrug resistance-as 99.8 7.1E-22 2.4E-26 193.2 3.9 188 79-387 3-202 (237)
45 2yl4_A ATP-binding cassette SU 99.8 1E-21 3.6E-26 216.9 4.1 205 78-387 339-555 (595)
46 3qf4_A ABC transporter, ATP-bi 99.8 1.4E-21 4.8E-26 215.3 3.3 202 77-387 339-551 (587)
47 4a82_A Cystic fibrosis transme 99.8 1.8E-21 6.1E-26 214.3 3.1 203 77-387 337-549 (578)
48 3qf4_B Uncharacterized ABC tra 99.8 1.8E-21 6.2E-26 215.0 2.2 203 77-387 352-563 (598)
49 2bbs_A Cystic fibrosis transme 99.8 1.1E-19 3.7E-24 182.6 4.8 184 78-387 39-232 (290)
50 4f4c_A Multidrug resistance pr 99.8 1.3E-19 4.4E-24 216.0 6.1 205 77-387 1074-1289(1321)
51 3g5u_A MCG1178, multidrug resi 99.8 2.2E-19 7.7E-24 213.5 4.6 203 77-387 385-598 (1284)
52 4f4c_A Multidrug resistance pr 99.7 4.1E-19 1.4E-23 211.8 5.9 204 76-387 412-626 (1321)
53 3g5u_A MCG1178, multidrug resi 99.7 3.6E-19 1.2E-23 211.7 4.2 205 77-387 1028-1243(1284)
54 3bk7_A ABC transporter ATP-bin 99.7 5E-18 1.7E-22 186.9 5.1 182 78-387 356-546 (607)
55 3ozx_A RNAse L inhibitor; ATP 99.7 4.2E-18 1.4E-22 185.0 2.2 185 77-387 267-460 (538)
56 1yqt_A RNAse L inhibitor; ATP- 99.7 6.4E-18 2.2E-22 184.0 2.4 182 78-387 286-476 (538)
57 3bk7_A ABC transporter ATP-bin 99.7 4.7E-18 1.6E-22 187.0 0.7 193 83-387 95-302 (607)
58 1yqt_A RNAse L inhibitor; ATP- 99.7 6E-18 2.1E-22 184.1 1.2 193 83-387 25-232 (538)
59 2iw3_A Elongation factor 3A; a 99.6 6.6E-17 2.2E-21 184.3 1.5 178 79-387 435-619 (986)
60 2iw3_A Elongation factor 3A; a 99.6 4.2E-17 1.4E-21 186.0 -1.7 53 77-129 669-731 (986)
61 3j16_B RLI1P; ribosome recycli 99.6 2.9E-16 9.9E-21 172.6 4.7 180 83-387 350-542 (608)
62 3ux8_A Excinuclease ABC, A sub 99.5 4.1E-16 1.4E-20 174.5 0.3 89 279-386 186-276 (670)
63 3j16_B RLI1P; ribosome recycli 99.5 3.4E-15 1.2E-19 164.1 0.8 82 288-387 214-295 (608)
64 3ozx_A RNAse L inhibitor; ATP 99.4 1.8E-14 6.2E-19 156.4 2.3 80 289-387 132-211 (538)
65 3ux8_A Excinuclease ABC, A sub 99.4 2.6E-14 9E-19 159.9 1.5 89 279-386 527-618 (670)
66 3b85_A Phosphate starvation-in 99.4 1.4E-14 4.8E-19 138.4 -1.5 55 299-376 108-162 (208)
67 2npi_A Protein CLP1; CLP1-PCF1 99.4 1.3E-15 4.5E-20 162.3 -11.2 77 77-182 116-205 (460)
68 3sop_A Neuronal-specific septi 99.4 1.3E-13 4.4E-18 137.1 2.4 69 99-183 2-72 (270)
69 3aez_A Pantothenate kinase; tr 99.3 5E-13 1.7E-17 135.5 0.6 33 293-331 174-206 (312)
70 2r6f_A Excinuclease ABC subuni 99.2 1E-12 3.4E-17 149.0 1.5 93 278-386 828-920 (972)
71 2vf7_A UVRA2, excinuclease ABC 99.2 1.8E-12 6.2E-17 146.5 1.2 90 278-386 713-805 (842)
72 2ygr_A Uvrabc system protein A 99.2 3.1E-12 1.1E-16 145.5 2.4 93 278-386 846-938 (993)
73 3pih_A Uvrabc system protein A 99.2 6.8E-12 2.3E-16 143.0 4.9 93 278-386 788-880 (916)
74 3szr_A Interferon-induced GTP- 99.2 2.7E-12 9.2E-17 141.7 1.0 94 79-182 10-121 (608)
75 1htw_A HI0065; nucleotide-bind 99.1 4.8E-12 1.6E-16 115.4 -0.9 82 81-181 9-97 (158)
76 4aby_A DNA repair protein RECN 99.1 5E-12 1.7E-16 133.1 -3.3 71 296-386 296-368 (415)
77 2qag_C Septin-7; cell cycle, c 99.0 1.7E-10 5.9E-15 121.2 4.6 90 77-183 9-100 (418)
78 4gp7_A Metallophosphoesterase; 98.9 8E-11 2.7E-15 108.6 -1.4 74 297-376 85-163 (171)
79 2jeo_A Uridine-cytidine kinase 98.9 5.4E-10 1.8E-14 109.1 4.3 67 89-181 9-81 (245)
80 1ye8_A Protein THEP1, hypothet 98.9 5.5E-11 1.9E-15 110.6 -3.0 35 293-333 74-115 (178)
81 1u0l_A Probable GTPase ENGC; p 98.9 9.6E-10 3.3E-14 110.8 4.9 93 103-212 173-287 (301)
82 2qnr_A Septin-2, protein NEDD5 98.9 7.4E-10 2.5E-14 111.6 3.6 83 83-182 2-87 (301)
83 2qag_B Septin-6, protein NEDD5 98.8 5.1E-10 1.7E-14 117.3 1.5 84 79-183 16-107 (427)
84 1znw_A Guanylate kinase, GMP k 98.8 3.4E-10 1.2E-14 107.6 -1.2 64 103-181 24-87 (207)
85 1z6g_A Guanylate kinase; struc 98.8 1E-09 3.6E-14 105.2 1.4 68 92-167 10-83 (218)
86 1e69_A Chromosome segregation 98.8 6.8E-10 2.3E-14 113.0 -1.1 71 290-374 214-284 (322)
87 2yv5_A YJEQ protein; hydrolase 98.7 6.8E-09 2.3E-13 104.6 5.8 104 103-220 169-290 (302)
88 2v9p_A Replication protein E1; 98.7 4.1E-10 1.4E-14 113.3 -3.5 49 79-129 101-155 (305)
89 2dpy_A FLII, flagellum-specifi 98.7 9.9E-10 3.4E-14 116.3 -1.6 95 78-182 130-238 (438)
90 3qf7_A RAD50; ABC-ATPase, ATPa 98.6 5.7E-09 2E-13 108.0 1.1 83 291-386 275-357 (365)
91 2qm8_A GTPase/ATPase; G protei 98.6 1.7E-09 5.9E-14 110.7 -4.4 85 79-166 29-121 (337)
92 2gza_A Type IV secretion syste 98.5 1.1E-08 3.9E-13 105.6 0.4 87 81-182 137-248 (361)
93 3b9q_A Chloroplast SRP recepto 98.5 4.6E-09 1.6E-13 105.8 -3.0 71 103-182 104-179 (302)
94 1ewq_A DNA mismatch repair pro 98.5 1.4E-08 4.8E-13 114.2 0.5 45 77-121 548-598 (765)
95 1tq4_A IIGP1, interferon-induc 98.5 5.1E-08 1.7E-12 102.1 3.7 76 101-208 71-148 (413)
96 1s96_A Guanylate kinase, GMP k 98.4 3.5E-08 1.2E-12 94.7 1.3 63 103-182 20-90 (219)
97 3tr0_A Guanylate kinase, GMP k 98.4 3.9E-08 1.3E-12 92.5 1.0 64 103-181 11-74 (205)
98 1t9h_A YLOQ, probable GTPase E 98.4 3.5E-08 1.2E-12 99.3 0.7 105 103-222 177-301 (307)
99 1rj9_A FTSY, signal recognitio 98.4 4.1E-08 1.4E-12 98.9 -0.0 72 102-182 105-180 (304)
100 2yhs_A FTSY, cell division pro 98.4 2.1E-08 7.2E-13 106.5 -2.3 78 96-182 284-371 (503)
101 1sq5_A Pantothenate kinase; P- 98.4 1.9E-08 6.4E-13 101.7 -2.9 87 78-181 36-151 (308)
102 1h65_A Chloroplast outer envel 98.3 6.7E-07 2.3E-11 88.3 7.6 86 239-334 8-101 (270)
103 2rcn_A Probable GTPase ENGC; Y 98.3 1.3E-07 4.5E-12 97.0 2.3 85 103-209 219-307 (358)
104 2og2_A Putative signal recogni 98.3 4E-08 1.4E-12 101.0 -1.7 71 103-182 161-236 (359)
105 1qhl_A Protein (cell division 98.3 1.1E-07 3.7E-12 91.6 0.8 74 79-160 9-91 (227)
106 2obl_A ESCN; ATPase, hydrolase 98.3 2.2E-07 7.7E-12 95.2 2.0 55 78-136 44-107 (347)
107 3euj_A Chromosome partition pr 98.2 5.2E-07 1.8E-11 96.0 4.6 45 91-138 16-67 (483)
108 2pt7_A CAG-ALFA; ATPase, prote 98.2 2E-07 7E-12 94.9 1.3 49 82-136 151-207 (330)
109 3thx_B DNA mismatch repair pro 98.2 9E-08 3.1E-12 109.3 -1.6 42 79-120 640-694 (918)
110 3e70_C DPA, signal recognition 98.2 8E-08 2.7E-12 97.7 -2.6 74 100-182 129-207 (328)
111 1wb9_A DNA mismatch repair pro 98.2 1.7E-06 5.8E-11 97.9 7.6 44 78-121 576-629 (800)
112 1tf7_A KAIC; homohexamer, hexa 98.1 9.4E-08 3.2E-12 103.7 -3.6 75 80-162 13-98 (525)
113 1p9r_A General secretion pathw 98.1 1.2E-07 4E-12 99.6 -3.6 55 79-136 143-203 (418)
114 2eyu_A Twitching motility prot 98.0 5.1E-07 1.7E-11 88.9 -0.4 46 80-129 6-58 (261)
115 2x8a_A Nuclear valosin-contain 98.0 1.3E-07 4.3E-12 93.9 -6.1 81 88-181 29-114 (274)
116 2i3b_A HCR-ntpase, human cance 98.0 2.1E-06 7.1E-11 80.3 2.5 49 103-161 5-54 (189)
117 3nwj_A ATSK2; P loop, shikimat 98.0 7.5E-07 2.6E-11 87.1 -0.7 44 78-121 16-70 (250)
118 2qag_A Septin-2, protein NEDD5 97.9 1.5E-06 5.2E-11 89.6 0.7 45 77-121 15-59 (361)
119 3asz_A Uridine kinase; cytidin 97.9 3.3E-06 1.1E-10 79.6 2.9 71 102-208 9-81 (211)
120 4a74_A DNA repair and recombin 97.9 2.1E-06 7.3E-11 81.8 1.3 70 100-182 25-97 (231)
121 1pui_A ENGB, probable GTP-bind 97.9 1.5E-06 5.2E-11 81.6 0.1 43 79-122 3-49 (210)
122 1iy2_A ATP-dependent metallopr 97.9 1.3E-07 4.5E-12 93.7 -8.6 53 81-136 51-107 (278)
123 1zp6_A Hypothetical protein AT 97.8 7.7E-06 2.6E-10 75.7 3.8 32 102-136 12-43 (191)
124 3lnc_A Guanylate kinase, GMP k 97.8 2.4E-06 8.3E-11 82.1 0.3 31 93-123 15-52 (231)
125 1ixz_A ATP-dependent metallopr 97.8 1.6E-07 5.6E-12 91.6 -8.3 53 81-136 27-83 (254)
126 1nij_A Hypothetical protein YJ 97.8 1.4E-06 4.9E-11 88.2 -1.9 70 103-182 8-102 (318)
127 4dcu_A GTP-binding protein ENG 97.8 2.1E-05 7E-10 83.7 6.7 63 261-333 194-256 (456)
128 3kta_A Chromosome segregation 97.8 2E-05 6.9E-10 72.4 5.7 17 103-119 30-46 (182)
129 2bdt_A BH3686; alpha-beta prot 97.8 1.1E-06 3.8E-11 81.6 -3.0 30 103-136 6-35 (189)
130 4dhe_A Probable GTP-binding pr 97.7 7.1E-05 2.4E-09 70.7 7.7 65 262-334 29-93 (223)
131 1in4_A RUVB, holliday junction 97.7 3.4E-06 1.2E-10 86.0 -1.8 42 80-121 19-73 (334)
132 1lw7_A Transcriptional regulat 97.7 1.8E-06 6.2E-11 89.1 -3.9 67 103-182 174-247 (365)
133 2ehv_A Hypothetical protein PH 97.7 1.7E-06 5.7E-11 83.6 -4.0 50 319-375 135-185 (251)
134 4eun_A Thermoresistant glucoki 97.7 1.5E-06 5.3E-11 81.6 -4.4 30 102-136 32-61 (200)
135 3cnl_A YLQF, putative uncharac 97.6 2.2E-05 7.7E-10 77.1 2.9 83 263-358 100-195 (262)
136 2f1r_A Molybdopterin-guanine d 97.6 3.6E-06 1.2E-10 77.3 -2.7 33 102-137 5-42 (171)
137 3a00_A Guanylate kinase, GMP k 97.6 2.9E-05 9.8E-10 71.9 3.3 20 103-122 5-24 (186)
138 2p5s_A RAS and EF-hand domain 97.6 7.9E-05 2.7E-09 69.2 6.1 81 242-331 8-88 (199)
139 3h2y_A GTPase family protein; 97.6 6.4E-05 2.2E-09 77.6 5.7 124 263-400 161-291 (368)
140 3lxw_A GTPase IMAP family memb 97.5 8.2E-05 2.8E-09 72.3 6.1 65 260-333 19-83 (247)
141 1lvg_A Guanylate kinase, GMP k 97.5 2.9E-05 1E-09 72.8 2.6 20 102-121 7-26 (198)
142 3lxx_A GTPase IMAP family memb 97.5 9.7E-05 3.3E-09 71.1 6.1 65 261-334 28-92 (239)
143 2o8b_B DNA mismatch repair pro 97.5 5.2E-05 1.8E-09 87.9 4.6 43 77-119 748-809 (1022)
144 3ec1_A YQEH GTPase; atnos1, at 97.5 7.4E-05 2.5E-09 77.1 5.0 123 263-400 163-292 (369)
145 3c8u_A Fructokinase; YP_612366 97.5 2.1E-05 7.1E-10 74.3 0.5 20 102-121 25-44 (208)
146 3uie_A Adenylyl-sulfate kinase 97.5 1E-05 3.5E-10 75.8 -1.7 26 103-128 29-55 (200)
147 1z2a_A RAS-related protein RAB 97.4 0.00018 6.1E-09 64.1 6.1 61 261-330 4-64 (168)
148 1kgd_A CASK, peripheral plasma 97.4 6.6E-05 2.2E-09 69.1 2.8 19 103-121 9-27 (180)
149 3vaa_A Shikimate kinase, SK; s 97.4 6.7E-05 2.3E-09 70.2 2.8 30 92-121 12-47 (199)
150 3tw8_B RAS-related protein RAB 97.4 0.00027 9.2E-09 63.8 6.7 61 261-330 8-68 (181)
151 1z0j_A RAB-22, RAS-related pro 97.3 0.00031 1.1E-08 62.7 6.8 60 262-330 6-65 (170)
152 1ek0_A Protein (GTP-binding pr 97.3 0.0003 1E-08 62.7 6.7 60 262-330 3-62 (170)
153 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00029 1E-08 63.4 6.6 61 261-330 6-66 (177)
154 1z08_A RAS-related protein RAB 97.3 0.00028 9.7E-09 63.0 6.3 61 262-331 6-66 (170)
155 2ewv_A Twitching motility prot 97.3 5.7E-05 2E-09 78.1 1.8 55 94-159 127-188 (372)
156 1svi_A GTP-binding protein YSX 97.3 0.00021 7.3E-09 65.7 5.4 63 262-336 23-85 (195)
157 3def_A T7I23.11 protein; chlor 97.3 0.0002 7E-09 70.0 5.5 63 262-334 36-98 (262)
158 1g16_A RAS-related protein SEC 97.3 0.00027 9.1E-09 63.1 5.7 60 262-330 3-62 (170)
159 2y8e_A RAB-protein 6, GH09086P 97.3 0.00038 1.3E-08 62.6 6.6 60 262-330 14-73 (179)
160 3kkq_A RAS-related protein M-R 97.3 0.0018 6.2E-08 58.6 11.2 61 261-331 17-77 (183)
161 2oap_1 GSPE-2, type II secreti 97.3 4.2E-05 1.4E-09 82.3 0.1 41 93-136 248-296 (511)
162 3iev_A GTP-binding protein ERA 97.3 0.00053 1.8E-08 68.8 8.1 61 265-334 13-73 (308)
163 3tqc_A Pantothenate kinase; bi 97.2 1.8E-05 6.2E-10 80.0 -2.8 20 102-121 95-114 (321)
164 2g6b_A RAS-related protein RAB 97.2 0.00046 1.6E-08 62.3 6.8 62 262-331 10-71 (180)
165 2oil_A CATX-8, RAS-related pro 97.2 0.00046 1.6E-08 63.4 6.8 63 261-332 24-86 (193)
166 2bme_A RAB4A, RAS-related prot 97.2 0.00052 1.8E-08 62.4 7.0 60 262-330 10-69 (186)
167 3pqc_A Probable GTP-binding pr 97.2 0.00047 1.6E-08 63.1 6.7 61 262-335 23-83 (195)
168 1r2q_A RAS-related protein RAB 97.2 0.00048 1.7E-08 61.3 6.7 61 262-331 6-66 (170)
169 1z0f_A RAB14, member RAS oncog 97.2 0.00047 1.6E-08 62.0 6.4 60 262-330 15-74 (179)
170 1zbd_A Rabphilin-3A; G protein 97.2 0.00056 1.9E-08 63.4 7.1 61 262-331 8-68 (203)
171 2xtp_A GTPase IMAP family memb 97.2 0.00034 1.2E-08 68.0 5.7 65 262-335 22-86 (260)
172 2ew1_A RAS-related protein RAB 97.2 0.00048 1.7E-08 64.4 6.5 61 261-330 25-85 (201)
173 1z06_A RAS-related protein RAB 97.2 0.00047 1.6E-08 63.2 6.3 60 262-330 20-79 (189)
174 1oix_A RAS-related protein RAB 97.2 0.00019 6.6E-09 66.4 3.6 24 99-122 29-52 (191)
175 2vp4_A Deoxynucleoside kinase; 97.2 0.00014 4.8E-09 69.7 2.7 30 102-136 23-52 (230)
176 3clv_A RAB5 protein, putative; 97.2 0.00041 1.4E-08 63.7 5.7 26 261-286 6-31 (208)
177 3tkl_A RAS-related protein RAB 97.2 0.00057 2E-08 62.7 6.7 61 261-330 15-75 (196)
178 2efe_B Small GTP-binding prote 97.1 0.00054 1.9E-08 61.9 6.2 61 261-330 11-71 (181)
179 3cph_A RAS-related protein SEC 97.1 0.00055 1.9E-08 63.8 6.4 60 262-330 20-79 (213)
180 3thx_A DNA mismatch repair pro 97.1 0.00021 7.1E-09 82.0 4.0 42 78-119 630-682 (934)
181 1vg8_A RAS-related protein RAB 97.1 0.00058 2E-08 63.3 6.4 61 261-330 7-67 (207)
182 2bcg_Y Protein YP2, GTP-bindin 97.1 0.00053 1.8E-08 63.8 6.1 62 261-331 7-68 (206)
183 2gf9_A RAS-related protein RAB 97.1 0.00066 2.3E-08 62.2 6.7 62 261-331 21-82 (189)
184 2f9l_A RAB11B, member RAS onco 97.1 0.00025 8.6E-09 65.8 3.7 24 99-122 5-28 (199)
185 2fg5_A RAB-22B, RAS-related pr 97.1 0.00058 2E-08 62.9 6.1 60 262-330 23-82 (192)
186 2il1_A RAB12; G-protein, GDP, 97.1 0.00052 1.8E-08 63.3 5.8 61 261-330 25-85 (192)
187 2j69_A Bacterial dynamin-like 97.1 0.0014 4.7E-08 73.2 10.2 29 261-289 68-96 (695)
188 2erx_A GTP-binding protein DI- 97.1 0.00047 1.6E-08 61.5 5.3 61 262-332 3-63 (172)
189 2fn4_A P23, RAS-related protei 97.1 0.00079 2.7E-08 60.6 6.7 61 262-332 9-69 (181)
190 1wf3_A GTP-binding protein; GT 97.1 0.00088 3E-08 67.0 7.7 61 264-334 9-69 (301)
191 2dhr_A FTSH; AAA+ protein, hex 97.1 5.1E-05 1.7E-09 81.3 -1.6 53 81-136 42-98 (499)
192 1x3s_A RAS-related protein RAB 97.1 0.00077 2.6E-08 61.7 6.7 61 262-331 15-75 (195)
193 3t5d_A Septin-7; GTP-binding p 97.1 0.00019 6.3E-09 70.8 2.6 108 315-433 4-117 (274)
194 2o52_A RAS-related protein RAB 97.1 0.00058 2E-08 63.4 5.7 61 261-330 24-84 (200)
195 1udx_A The GTP-binding protein 97.1 0.00046 1.6E-08 72.2 5.4 28 95-122 147-180 (416)
196 1cr0_A DNA primase/helicase; R 97.0 9.4E-05 3.2E-09 73.6 0.1 30 92-121 22-57 (296)
197 3q85_A GTP-binding protein REM 97.0 0.00083 2.8E-08 59.9 6.4 61 263-332 3-63 (169)
198 2a5j_A RAS-related protein RAB 97.0 0.00063 2.2E-08 62.5 5.7 61 261-330 20-80 (191)
199 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00029 9.8E-09 62.9 3.1 17 103-119 27-43 (149)
200 3bc1_A RAS-related protein RAB 97.0 0.00088 3E-08 61.0 6.5 61 261-330 10-80 (195)
201 2o5v_A DNA replication and rep 97.0 0.00027 9.3E-09 72.5 3.3 62 295-370 265-329 (359)
202 1kao_A RAP2A; GTP-binding prot 97.0 0.0011 3.8E-08 58.6 7.0 60 262-331 3-62 (167)
203 4e22_A Cytidylate kinase; P-lo 97.0 0.00027 9.1E-09 68.8 3.0 29 101-129 29-62 (252)
204 1w1w_A Structural maintenance 97.0 0.00034 1.2E-08 73.5 3.8 80 292-386 330-409 (430)
205 4dsu_A GTPase KRAS, isoform 2B 97.0 0.0015 5.1E-08 59.3 7.7 60 262-331 4-63 (189)
206 1c1y_A RAS-related protein RAP 97.0 0.0012 4E-08 58.6 6.7 60 262-331 3-62 (167)
207 1u8z_A RAS-related protein RAL 97.0 0.0016 5.5E-08 57.6 7.6 60 262-331 4-63 (168)
208 1kag_A SKI, shikimate kinase I 97.0 0.00031 1.1E-08 63.5 2.8 20 102-121 7-26 (173)
209 3k53_A Ferrous iron transport 96.9 0.0012 4E-08 64.8 7.1 60 263-333 4-63 (271)
210 2bbw_A Adenylate kinase 4, AK4 96.9 0.00037 1.3E-08 67.3 3.3 28 102-129 30-62 (246)
211 3t5g_A GTP-binding protein RHE 96.9 0.0015 5E-08 59.1 7.2 61 262-332 6-66 (181)
212 3ney_A 55 kDa erythrocyte memb 96.9 0.00033 1.1E-08 65.6 2.8 19 103-121 23-41 (197)
213 1pzn_A RAD51, DNA repair and r 96.9 0.00024 8.2E-09 72.7 2.0 61 103-183 135-204 (349)
214 2j41_A Guanylate kinase; GMP, 96.9 0.00032 1.1E-08 65.3 2.7 21 102-122 9-29 (207)
215 1ky3_A GTP-binding protein YPT 96.9 0.00077 2.6E-08 60.7 5.2 61 261-330 7-68 (182)
216 2ce2_X GTPase HRAS; signaling 96.9 0.0016 5.3E-08 57.4 7.1 59 263-331 4-62 (166)
217 3tau_A Guanylate kinase, GMP k 96.9 0.00033 1.1E-08 65.9 2.8 21 102-122 11-31 (208)
218 2hup_A RAS-related protein RAB 96.9 0.00096 3.3E-08 62.0 5.9 61 261-330 28-88 (201)
219 1knq_A Gluconate kinase; ALFA/ 96.9 0.00026 9.1E-09 64.3 2.0 30 102-136 11-40 (175)
220 2nzj_A GTP-binding protein REM 96.9 0.0009 3.1E-08 60.0 5.5 61 262-332 4-64 (175)
221 1puj_A YLQF, conserved hypothe 96.9 0.00055 1.9E-08 67.9 4.2 60 262-334 120-179 (282)
222 2cxx_A Probable GTP-binding pr 96.9 0.00053 1.8E-08 62.5 3.8 56 263-333 2-57 (190)
223 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.0009 3.1E-08 60.6 5.3 60 262-331 5-64 (186)
224 2wji_A Ferrous iron transport 96.9 0.0031 1.1E-07 56.3 8.7 59 263-332 4-62 (165)
225 2f7s_A C25KG, RAS-related prot 96.9 0.0011 3.7E-08 62.2 5.7 61 261-330 24-94 (217)
226 3t34_A Dynamin-related protein 96.9 0.00034 1.2E-08 71.7 2.4 40 83-122 12-57 (360)
227 1zu4_A FTSY; GTPase, signal re 96.9 0.00013 4.5E-09 73.7 -0.8 34 96-129 96-137 (320)
228 2fu5_C RAS-related protein RAB 96.8 0.00059 2E-08 61.9 3.7 61 262-331 8-68 (183)
229 2a9k_A RAS-related protein RAL 96.8 0.0023 7.9E-08 57.8 7.6 60 262-331 18-77 (187)
230 1f2t_B RAD50 ABC-ATPase; DNA d 96.8 6.9E-05 2.4E-09 67.0 -2.6 78 291-387 53-136 (148)
231 3cpj_B GTP-binding protein YPT 96.8 0.0012 4.1E-08 62.4 5.9 62 261-331 12-73 (223)
232 3jvv_A Twitching mobility prot 96.8 0.0004 1.4E-08 71.2 2.5 20 102-121 126-145 (356)
233 3oes_A GTPase rhebl1; small GT 96.8 0.0013 4.6E-08 60.8 6.0 61 262-332 24-84 (201)
234 2bov_A RAla, RAS-related prote 96.8 0.0027 9.3E-08 58.5 8.0 60 262-331 14-73 (206)
235 2qu8_A Putative nucleolar GTP- 96.8 0.001 3.6E-08 63.1 5.1 61 262-333 29-89 (228)
236 3iby_A Ferrous iron transport 96.8 0.002 6.8E-08 62.8 7.2 60 264-334 3-62 (256)
237 3con_A GTPase NRAS; structural 96.8 0.0026 9E-08 58.0 7.6 60 262-331 21-80 (190)
238 4dkx_A RAS-related protein RAB 96.8 0.0015 5.1E-08 62.0 5.9 61 262-331 13-73 (216)
239 3m6a_A ATP-dependent protease 96.8 0.00013 4.4E-09 79.3 -1.9 51 79-129 83-140 (543)
240 2yc2_C IFT27, small RAB-relate 96.7 0.00081 2.8E-08 62.2 3.8 61 261-330 19-83 (208)
241 3reg_A RHO-like small GTPase; 96.7 0.0025 8.4E-08 58.5 7.1 60 261-330 22-81 (194)
242 2gf0_A GTP-binding protein DI- 96.7 0.00094 3.2E-08 61.4 4.2 60 262-331 8-67 (199)
243 4djt_A GTP-binding nuclear pro 96.7 0.001 3.6E-08 62.3 4.6 63 260-331 9-72 (218)
244 1mky_A Probable GTP-binding pr 96.7 0.00056 1.9E-08 72.2 2.9 23 100-122 181-203 (439)
245 3pih_A Uvrabc system protein A 96.7 0.00023 7.8E-09 81.3 -0.3 89 279-386 448-538 (916)
246 2atv_A RERG, RAS-like estrogen 96.7 0.0038 1.3E-07 57.4 8.2 62 261-332 27-88 (196)
247 1upt_A ARL1, ADP-ribosylation 96.7 0.0018 6E-08 57.7 5.6 56 262-331 7-62 (171)
248 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00044 1.5E-08 70.2 1.7 88 264-375 173-278 (330)
249 2hxs_A RAB-26, RAS-related pro 96.7 0.00078 2.7E-08 60.6 3.1 61 262-331 6-67 (178)
250 2f9l_A RAB11B, member RAS onco 96.7 0.0021 7.2E-08 59.5 6.1 60 262-330 5-64 (199)
251 2lkc_A Translation initiation 96.7 0.002 7E-08 57.8 5.9 25 262-286 8-32 (178)
252 2dyk_A GTP-binding protein; GT 96.7 0.0016 5.4E-08 57.4 5.0 61 263-333 2-62 (161)
253 1rz3_A Hypothetical protein rb 96.7 0.0005 1.7E-08 64.3 1.7 28 102-129 25-54 (201)
254 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.00069 2.3E-08 70.2 2.9 22 100-121 21-42 (392)
255 3l0i_B RAS-related protein RAB 96.7 0.00056 1.9E-08 63.4 2.0 62 261-331 32-93 (199)
256 1svm_A Large T antigen; AAA+ f 96.7 0.00026 9.1E-09 73.0 -0.3 36 93-129 157-198 (377)
257 2h57_A ADP-ribosylation factor 96.6 0.0022 7.7E-08 58.6 6.1 58 262-331 21-78 (190)
258 1oix_A RAS-related protein RAB 96.6 0.0028 9.4E-08 58.4 6.6 63 261-332 28-90 (191)
259 3lda_A DNA repair protein RAD5 96.6 0.00033 1.1E-08 72.9 0.3 17 103-119 182-198 (400)
260 2wji_A Ferrous iron transport 96.6 0.0011 3.8E-08 59.4 3.7 23 100-122 4-26 (165)
261 1cke_A CK, MSSA, protein (cyti 96.6 0.00077 2.6E-08 63.8 2.8 29 101-129 7-40 (227)
262 3dz8_A RAS-related protein RAB 96.6 0.00059 2E-08 62.7 1.9 61 260-329 21-81 (191)
263 2gco_A H9, RHO-related GTP-bin 96.6 0.0021 7.1E-08 59.6 5.6 60 261-330 24-83 (201)
264 2wjg_A FEOB, ferrous iron tran 96.6 0.0018 6.2E-08 58.9 5.1 61 262-333 7-67 (188)
265 1ksh_A ARF-like protein 2; sma 96.6 0.003 1E-07 57.4 6.5 56 261-330 17-72 (186)
266 2fv8_A H6, RHO-related GTP-bin 96.6 0.0022 7.5E-08 59.7 5.7 61 261-331 24-84 (207)
267 3c5c_A RAS-like protein 12; GD 96.6 0.0036 1.2E-07 57.3 7.0 61 261-331 20-80 (187)
268 1m7b_A RND3/RHOE small GTP-bin 96.6 0.0035 1.2E-07 57.0 6.7 60 261-330 6-65 (184)
269 3qks_A DNA double-strand break 96.6 0.001 3.6E-08 62.4 3.1 17 103-119 27-43 (203)
270 1f5n_A Interferon-induced guan 96.5 0.0023 7.9E-08 69.7 6.2 67 262-333 38-104 (592)
271 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.00042 1.4E-08 65.5 0.4 19 103-121 27-45 (235)
272 1gwn_A RHO-related GTP-binding 96.5 0.0033 1.1E-07 58.7 6.6 61 260-330 26-86 (205)
273 3ihw_A Centg3; RAS, centaurin, 96.5 0.0037 1.3E-07 57.1 6.8 60 261-331 19-78 (184)
274 3bwd_D RAC-like GTP-binding pr 96.5 0.0012 4.1E-08 59.6 3.4 61 261-331 7-67 (182)
275 3q72_A GTP-binding protein RAD 96.5 0.0028 9.7E-08 56.2 5.8 58 263-331 3-60 (166)
276 3ec2_A DNA replication protein 96.5 0.00078 2.7E-08 61.5 2.1 20 102-121 41-60 (180)
277 1r8s_A ADP-ribosylation factor 96.5 0.0023 8E-08 56.6 5.2 55 263-331 1-55 (164)
278 2j1l_A RHO-related GTP-binding 96.5 0.0028 9.5E-08 59.5 5.9 60 262-331 34-93 (214)
279 2kjq_A DNAA-related protein; s 96.5 0.00073 2.5E-08 60.2 1.7 27 95-121 31-58 (149)
280 3a1s_A Iron(II) transport prot 96.5 0.0021 7.2E-08 62.7 5.0 61 262-333 5-65 (258)
281 4gzl_A RAS-related C3 botulinu 96.5 0.0032 1.1E-07 58.5 6.1 60 261-330 29-88 (204)
282 3ice_A Transcription terminati 96.5 0.00074 2.5E-08 69.3 1.7 44 77-120 131-195 (422)
283 2zej_A Dardarin, leucine-rich 96.5 0.0013 4.4E-08 60.1 3.3 23 100-122 3-25 (184)
284 3gj0_A GTP-binding nuclear pro 96.5 0.0014 4.7E-08 61.8 3.4 61 261-330 14-74 (221)
285 2p67_A LAO/AO transport system 96.5 0.00024 8.3E-09 72.4 -2.0 42 80-121 31-78 (341)
286 2iwr_A Centaurin gamma 1; ANK 96.5 0.0033 1.1E-07 56.6 5.9 59 262-331 7-65 (178)
287 1jjv_A Dephospho-COA kinase; P 96.5 0.0011 3.8E-08 61.8 2.7 21 101-121 4-24 (206)
288 2q3h_A RAS homolog gene family 96.5 0.0049 1.7E-07 56.8 7.1 61 261-331 19-79 (201)
289 3cbq_A GTP-binding protein REM 96.5 0.0028 9.6E-08 58.6 5.4 63 261-332 22-84 (195)
290 2atx_A Small GTP binding prote 96.4 0.0028 9.5E-08 58.1 5.3 62 261-332 17-78 (194)
291 1sxj_E Activator 1 40 kDa subu 96.4 0.0011 3.9E-08 67.1 2.9 32 102-136 39-73 (354)
292 3i8s_A Ferrous iron transport 96.4 0.0019 6.4E-08 63.6 4.3 62 262-334 3-64 (274)
293 2wjg_A FEOB, ferrous iron tran 96.4 0.0018 6E-08 59.0 3.7 22 100-121 8-29 (188)
294 1zd9_A ADP-ribosylation factor 96.4 0.0032 1.1E-07 57.5 5.5 56 262-330 22-77 (188)
295 2qor_A Guanylate kinase; phosp 96.4 0.0013 4.3E-08 61.5 2.8 20 102-121 15-34 (204)
296 2gj8_A MNME, tRNA modification 96.4 0.0042 1.4E-07 56.1 6.2 61 263-333 5-65 (172)
297 2ygr_A Uvrabc system protein A 96.4 0.00027 9.4E-09 80.7 -2.2 117 251-387 465-596 (993)
298 1ex7_A Guanylate kinase; subst 96.4 0.0014 4.6E-08 60.8 2.8 19 103-121 5-23 (186)
299 4bas_A ADP-ribosylation factor 96.4 0.0045 1.5E-07 56.7 6.3 58 262-331 17-74 (199)
300 3k1j_A LON protease, ATP-depen 96.4 0.00071 2.4E-08 74.4 0.9 38 84-121 39-82 (604)
301 3qkt_A DNA double-strand break 96.4 0.0016 5.4E-08 66.2 3.4 25 95-119 14-43 (339)
302 4ad8_A DNA repair protein RECN 96.4 0.00077 2.6E-08 72.6 1.1 77 291-387 392-471 (517)
303 2if2_A Dephospho-COA kinase; a 96.4 0.0014 4.8E-08 61.0 2.7 20 102-121 4-23 (204)
304 3t34_A Dynamin-related protein 96.3 0.0054 1.9E-07 62.7 7.2 25 264-288 36-60 (360)
305 3t1o_A Gliding protein MGLA; G 96.3 0.0025 8.5E-08 58.2 4.1 70 260-331 12-85 (198)
306 2gj8_A MNME, tRNA modification 96.3 0.0021 7.3E-08 58.1 3.4 23 100-122 5-27 (172)
307 3lxx_A GTPase IMAP family memb 96.3 0.0025 8.4E-08 61.0 4.0 25 99-123 29-53 (239)
308 2j0v_A RAC-like GTP-binding pr 96.3 0.0035 1.2E-07 58.4 5.0 61 261-331 8-68 (212)
309 3q3j_B RHO-related GTP-binding 96.3 0.0063 2.2E-07 57.1 6.7 60 261-330 26-85 (214)
310 2r6f_A Excinuclease ABC subuni 96.2 0.00067 2.3E-08 77.3 -0.2 89 279-386 488-578 (972)
311 2qt1_A Nicotinamide riboside k 96.2 0.0018 6.1E-08 60.5 2.6 20 102-121 24-43 (207)
312 1n0w_A DNA repair protein RAD5 96.2 0.002 6.8E-08 61.4 2.9 19 103-121 28-46 (243)
313 2zej_A Dardarin, leucine-rich 96.2 0.0038 1.3E-07 56.9 4.7 60 263-330 3-66 (184)
314 1nlf_A Regulatory protein REPA 96.2 0.0024 8.1E-08 62.8 3.5 27 103-129 34-60 (279)
315 1ls1_A Signal recognition part 96.2 0.001 3.4E-08 66.4 0.6 40 80-121 77-120 (295)
316 1m2o_B GTP-binding protein SAR 96.2 0.002 6.9E-08 59.2 2.6 28 94-121 13-45 (190)
317 3t61_A Gluconokinase; PSI-biol 96.2 0.0021 7.1E-08 59.8 2.7 20 102-121 21-40 (202)
318 3kb2_A SPBC2 prophage-derived 96.1 0.0022 7.5E-08 57.6 2.7 19 102-120 4-22 (173)
319 1jwy_B Dynamin A GTPase domain 96.1 0.004 1.4E-07 62.0 4.9 25 263-287 25-49 (315)
320 1np6_A Molybdopterin-guanine d 96.1 0.0023 7.9E-08 58.6 2.8 19 102-120 9-27 (174)
321 1ega_A Protein (GTP-binding pr 96.1 0.003 1E-07 63.1 3.8 22 101-122 10-31 (301)
322 1moz_A ARL1, ADP-ribosylation 96.1 0.0027 9.1E-08 57.4 3.0 57 262-332 18-74 (183)
323 2aka_B Dynamin-1; fusion prote 96.1 0.0064 2.2E-07 60.0 6.0 25 263-287 27-51 (299)
324 1pui_A ENGB, probable GTP-bind 96.0 0.0045 1.5E-07 57.4 4.5 24 263-286 27-50 (210)
325 2fh5_B SR-beta, signal recogni 96.0 0.0056 1.9E-07 57.0 5.1 59 262-331 7-65 (214)
326 2b6h_A ADP-ribosylation factor 96.0 0.0045 1.5E-07 56.9 4.3 56 262-331 29-84 (192)
327 1f6b_A SAR1; gtpases, N-termin 96.0 0.00083 2.8E-08 62.4 -0.9 29 93-121 14-47 (198)
328 2h17_A ADP-ribosylation factor 96.0 0.0028 9.7E-08 57.5 2.7 56 262-331 21-76 (181)
329 2x77_A ADP-ribosylation factor 96.0 0.0043 1.5E-07 56.5 3.8 56 262-331 22-77 (189)
330 2kjq_A DNAA-related protein; s 95.9 0.0018 6E-08 57.7 1.0 22 264-285 38-59 (149)
331 1kao_A RAP2A; GTP-binding prot 95.9 0.0044 1.5E-07 54.6 3.7 22 100-121 4-25 (167)
332 3r7w_A Gtpase1, GTP-binding pr 95.9 0.007 2.4E-07 60.5 5.5 61 262-331 3-63 (307)
333 1ek0_A Protein (GTP-binding pr 95.9 0.0053 1.8E-07 54.3 4.1 23 100-122 4-26 (170)
334 1odf_A YGR205W, hypothetical 3 95.9 0.0031 1.1E-07 62.7 2.8 34 294-333 133-166 (290)
335 3thx_A DNA mismatch repair pro 95.9 0.0011 3.6E-08 76.2 -0.8 49 319-376 741-789 (934)
336 4eaq_A DTMP kinase, thymidylat 95.9 0.0029 9.9E-08 60.5 2.4 19 102-120 29-47 (229)
337 3b1v_A Ferrous iron uptake tra 95.9 0.005 1.7E-07 60.5 4.1 60 262-333 3-62 (272)
338 3lw7_A Adenylate kinase relate 95.9 0.0035 1.2E-07 56.1 2.8 18 102-119 4-21 (179)
339 3qq5_A Small GTP-binding prote 95.9 0.0031 1.1E-07 66.0 2.7 65 260-333 32-96 (423)
340 3cr8_A Sulfate adenylyltranfer 95.9 0.0024 8.1E-08 69.2 1.8 27 102-128 372-401 (552)
341 1z2a_A RAS-related protein RAB 95.8 0.0049 1.7E-07 54.5 3.6 24 99-122 5-28 (168)
342 2x2e_A Dynamin-1; nitration, h 95.8 0.0095 3.2E-07 60.7 6.2 25 263-287 32-56 (353)
343 1qhx_A CPT, protein (chloramph 95.8 0.0038 1.3E-07 56.5 2.8 20 102-121 6-25 (178)
344 2vf7_A UVRA2, excinuclease ABC 95.8 0.0013 4.6E-08 74.4 -0.3 90 278-386 362-453 (842)
345 1m2o_B GTP-binding protein SAR 95.8 0.0096 3.3E-07 54.6 5.6 55 263-331 24-78 (190)
346 3lxw_A GTPase IMAP family memb 95.8 0.0054 1.8E-07 59.2 4.0 24 99-122 21-44 (247)
347 2pez_A Bifunctional 3'-phospho 95.8 0.0039 1.3E-07 56.7 2.8 20 102-121 8-27 (179)
348 1zj6_A ADP-ribosylation factor 95.8 0.0045 1.5E-07 56.4 3.2 57 261-331 15-71 (187)
349 2nzj_A GTP-binding protein REM 95.8 0.0056 1.9E-07 54.6 3.7 23 100-122 5-27 (175)
350 1z08_A RAS-related protein RAB 95.8 0.0056 1.9E-07 54.3 3.6 24 99-122 6-29 (170)
351 3k53_A Ferrous iron transport 95.8 0.0049 1.7E-07 60.3 3.5 23 100-122 4-26 (271)
352 1c1y_A RAS-related protein RAP 95.8 0.0057 1.9E-07 54.0 3.6 22 100-121 4-25 (167)
353 2erx_A GTP-binding protein DI- 95.8 0.0057 2E-07 54.2 3.7 23 100-122 4-26 (172)
354 3tw8_B RAS-related protein RAB 95.8 0.0059 2E-07 54.7 3.8 23 100-122 10-32 (181)
355 1ega_A Protein (GTP-binding pr 95.7 0.0097 3.3E-07 59.3 5.6 58 264-331 10-67 (301)
356 3gee_A MNME, tRNA modification 95.7 0.006 2.1E-07 64.9 4.3 60 263-332 234-293 (476)
357 1u8z_A RAS-related protein RAL 95.7 0.0059 2E-07 53.8 3.6 23 100-122 5-27 (168)
358 1z0j_A RAB-22, RAS-related pro 95.7 0.006 2.1E-07 54.0 3.7 24 100-123 7-30 (170)
359 3q72_A GTP-binding protein RAD 95.7 0.005 1.7E-07 54.5 3.0 23 100-122 3-25 (166)
360 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0062 2.1E-07 54.5 3.7 24 99-122 7-30 (177)
361 2ce2_X GTPase HRAS; signaling 95.7 0.0061 2.1E-07 53.5 3.5 23 100-122 4-26 (166)
362 3q85_A GTP-binding protein REM 95.7 0.006 2E-07 54.2 3.4 22 100-121 3-24 (169)
363 3th5_A RAS-related C3 botulinu 94.7 0.0019 6.4E-08 60.0 0.0 62 260-331 28-89 (204)
364 1nrj_B SR-beta, signal recogni 95.6 0.0063 2.2E-07 56.8 3.6 57 260-331 10-66 (218)
365 1g16_A RAS-related protein SEC 95.6 0.0061 2.1E-07 54.0 3.3 23 100-122 4-26 (170)
366 3llu_A RAS-related GTP-binding 95.6 0.0068 2.3E-07 55.8 3.6 61 262-332 20-81 (196)
367 2ged_A SR-beta, signal recogni 95.6 0.0058 2E-07 55.8 3.1 23 100-122 49-71 (193)
368 1ky3_A GTP-binding protein YPT 95.6 0.0071 2.4E-07 54.2 3.7 24 99-122 8-31 (182)
369 4dsu_A GTPase KRAS, isoform 2B 95.6 0.0072 2.5E-07 54.6 3.7 24 99-122 4-27 (189)
370 2www_A Methylmalonic aciduria 95.6 0.005 1.7E-07 62.8 2.8 22 100-121 75-96 (349)
371 1r2q_A RAS-related protein RAB 95.6 0.0074 2.5E-07 53.3 3.6 23 99-121 6-28 (170)
372 1fzq_A ADP-ribosylation factor 95.6 0.0071 2.4E-07 54.9 3.6 55 262-330 16-70 (181)
373 2jaq_A Deoxyguanosine kinase; 95.6 0.0054 1.9E-07 56.6 2.8 20 102-121 3-22 (205)
374 2ged_A SR-beta, signal recogni 95.6 0.0041 1.4E-07 56.8 1.9 25 262-286 48-72 (193)
375 2fn4_A P23, RAS-related protei 95.5 0.0073 2.5E-07 54.1 3.5 23 100-122 10-32 (181)
376 1fzq_A ADP-ribosylation factor 95.5 0.0069 2.4E-07 55.0 3.3 24 99-122 16-39 (181)
377 2cvh_A DNA repair and recombin 95.5 0.0052 1.8E-07 57.4 2.5 19 103-121 24-42 (220)
378 3auy_A DNA double-strand break 95.5 0.0061 2.1E-07 62.6 3.2 75 293-387 278-359 (371)
379 3r20_A Cytidylate kinase; stru 95.5 0.0058 2E-07 58.6 2.8 20 101-120 11-30 (233)
380 3ihw_A Centg3; RAS, centaurin, 95.5 0.0081 2.8E-07 54.8 3.6 23 99-121 20-42 (184)
381 1via_A Shikimate kinase; struc 95.5 0.0061 2.1E-07 55.2 2.8 20 102-121 7-26 (175)
382 2e87_A Hypothetical protein PH 95.5 0.014 4.7E-07 59.6 5.7 61 262-333 167-227 (357)
383 1y63_A LMAJ004144AAA protein; 95.5 0.0048 1.6E-07 56.5 2.1 20 102-121 13-32 (184)
384 1upt_A ARL1, ADP-ribosylation 95.5 0.0078 2.7E-07 53.4 3.4 22 100-121 8-29 (171)
385 2hxs_A RAB-26, RAS-related pro 95.5 0.0085 2.9E-07 53.6 3.7 23 99-121 6-28 (178)
386 2oil_A CATX-8, RAS-related pro 95.5 0.0083 2.8E-07 54.8 3.6 24 99-122 25-48 (193)
387 1svi_A GTP-binding protein YSX 95.5 0.0067 2.3E-07 55.4 3.0 23 100-122 24-46 (195)
388 2y8e_A RAB-protein 6, GH09086P 95.4 0.0082 2.8E-07 53.6 3.5 22 100-121 15-36 (179)
389 2qmh_A HPR kinase/phosphorylas 95.4 0.0099 3.4E-07 55.4 4.0 31 92-122 22-57 (205)
390 1mky_A Probable GTP-binding pr 95.4 0.013 4.6E-07 61.5 5.6 59 264-332 3-61 (439)
391 1moz_A ARL1, ADP-ribosylation 95.4 0.0061 2.1E-07 54.9 2.6 24 98-121 17-40 (183)
392 1f6b_A SAR1; gtpases, N-termin 95.4 0.0086 2.9E-07 55.3 3.7 56 263-332 26-81 (198)
393 1kht_A Adenylate kinase; phosp 95.4 0.0065 2.2E-07 55.4 2.8 19 102-120 6-24 (192)
394 1r8s_A ADP-ribosylation factor 95.4 0.0075 2.6E-07 53.2 3.1 21 101-121 2-22 (164)
395 3bc1_A RAS-related protein RAB 95.4 0.0089 3E-07 54.1 3.6 23 99-121 11-33 (195)
396 3cm0_A Adenylate kinase; ATP-b 95.4 0.0068 2.3E-07 55.2 2.8 19 102-120 7-25 (186)
397 2p5t_B PEZT; postsegregational 95.4 0.0049 1.7E-07 59.7 1.9 28 102-129 35-62 (253)
398 1vht_A Dephospho-COA kinase; s 95.4 0.0067 2.3E-07 57.0 2.8 21 101-121 6-26 (218)
399 3pqc_A Probable GTP-binding pr 95.4 0.0077 2.6E-07 54.7 3.1 24 100-123 24-47 (195)
400 1tf7_A KAIC; homohexamer, hexa 95.4 0.0038 1.3E-07 67.3 1.2 68 292-372 350-417 (525)
401 2cxx_A Probable GTP-binding pr 95.4 0.0075 2.6E-07 54.6 3.0 22 101-122 3-24 (190)
402 3clv_A RAB5 protein, putative; 95.4 0.0088 3E-07 54.5 3.5 24 99-122 7-30 (208)
403 3b1v_A Ferrous iron uptake tra 95.4 0.0086 3E-07 58.8 3.6 23 100-122 4-26 (272)
404 1gtv_A TMK, thymidylate kinase 95.4 0.0031 1.1E-07 58.9 0.4 19 102-120 3-21 (214)
405 1gvn_B Zeta; postsegregational 95.4 0.007 2.4E-07 59.9 3.0 20 102-121 36-55 (287)
406 1ly1_A Polynucleotide kinase; 95.4 0.0071 2.4E-07 54.5 2.8 20 102-121 5-24 (181)
407 2efe_B Small GTP-binding prote 95.4 0.0096 3.3E-07 53.4 3.6 24 99-122 12-35 (181)
408 2wkq_A NPH1-1, RAS-related C3 95.3 0.021 7.1E-07 56.9 6.5 60 262-331 155-214 (332)
409 3kkq_A RAS-related protein M-R 95.3 0.0097 3.3E-07 53.7 3.6 23 99-121 18-40 (183)
410 1znw_A Guanylate kinase, GMP k 95.3 0.0007 2.4E-08 63.5 -4.2 149 201-375 23-191 (207)
411 2g6b_A RAS-related protein RAB 95.3 0.01 3.4E-07 53.2 3.7 26 97-122 8-33 (180)
412 1uf9_A TT1252 protein; P-loop, 95.3 0.0091 3.1E-07 55.1 3.5 22 101-122 10-31 (203)
413 2a9k_A RAS-related protein RAL 95.3 0.0098 3.4E-07 53.5 3.6 24 99-122 18-41 (187)
414 3con_A GTPase NRAS; structural 95.3 0.0099 3.4E-07 54.0 3.6 23 100-122 22-44 (190)
415 1xjc_A MOBB protein homolog; s 95.3 0.0077 2.6E-07 54.8 2.8 19 102-120 7-25 (169)
416 2cjw_A GTP-binding protein GEM 95.3 0.017 5.9E-07 53.0 5.2 61 262-331 6-67 (192)
417 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.01 3.5E-07 53.4 3.6 22 100-121 6-27 (186)
418 2lkc_A Translation initiation 95.3 0.0088 3E-07 53.5 3.1 22 100-121 9-30 (178)
419 2ze6_A Isopentenyl transferase 95.3 0.0075 2.6E-07 58.5 2.8 20 102-121 4-23 (253)
420 3tqf_A HPR(Ser) kinase; transf 95.3 0.013 4.4E-07 53.4 4.1 30 92-121 4-38 (181)
421 2g3y_A GTP-binding protein GEM 95.2 0.023 7.8E-07 53.5 6.0 62 261-331 36-98 (211)
422 1nks_A Adenylate kinase; therm 95.2 0.0076 2.6E-07 54.9 2.6 19 102-120 4-22 (194)
423 1wf3_A GTP-binding protein; GT 95.2 0.012 4.1E-07 58.7 4.2 23 100-122 8-30 (301)
424 2bme_A RAB4A, RAS-related prot 95.2 0.0097 3.3E-07 53.7 3.3 24 99-122 10-33 (186)
425 3iij_A Coilin-interacting nucl 95.2 0.008 2.7E-07 54.6 2.7 19 102-120 14-32 (180)
426 1z0f_A RAB14, member RAS oncog 95.2 0.011 3.8E-07 52.8 3.6 24 99-122 15-38 (179)
427 3t1o_A Gliding protein MGLA; G 95.2 0.011 3.7E-07 53.7 3.6 24 99-122 14-37 (198)
428 4ad8_A DNA repair protein RECN 95.2 0.0027 9.2E-08 68.4 -0.7 26 94-119 50-80 (517)
429 2fg5_A RAB-22B, RAS-related pr 95.2 0.011 3.6E-07 54.2 3.5 24 99-122 23-46 (192)
430 3t5g_A GTP-binding protein RHE 95.2 0.011 3.6E-07 53.3 3.5 23 99-121 6-28 (181)
431 3cbq_A GTP-binding protein REM 95.2 0.01 3.5E-07 54.7 3.4 23 99-121 23-45 (195)
432 1vma_A Cell division protein F 95.2 0.0058 2E-07 61.1 1.7 19 103-121 108-126 (306)
433 3trf_A Shikimate kinase, SK; a 95.2 0.0085 2.9E-07 54.6 2.7 19 102-120 8-26 (185)
434 2bov_A RAla, RAS-related prote 95.2 0.011 3.8E-07 54.3 3.6 24 99-122 14-37 (206)
435 1ksh_A ARF-like protein 2; sma 95.2 0.012 4.2E-07 53.2 3.8 25 98-122 17-41 (186)
436 3tkl_A RAS-related protein RAB 95.1 0.011 3.8E-07 53.8 3.4 24 99-122 16-39 (196)
437 2i3b_A HCR-ntpase, human cance 95.1 0.0085 2.9E-07 55.5 2.6 20 265-284 4-23 (189)
438 2xtp_A GTPase IMAP family memb 95.1 0.012 4E-07 57.0 3.7 24 99-122 22-45 (260)
439 2gf0_A GTP-binding protein DI- 95.1 0.011 3.7E-07 54.1 3.3 22 100-121 9-30 (199)
440 1m7b_A RND3/RHOE small GTP-bin 95.1 0.012 4E-07 53.4 3.5 24 99-122 7-30 (184)
441 1zbd_A Rabphilin-3A; G protein 95.1 0.013 4.3E-07 54.0 3.8 24 99-122 8-31 (203)
442 2gf9_A RAS-related protein RAB 95.1 0.011 3.9E-07 53.7 3.4 24 99-122 22-45 (189)
443 2yvu_A Probable adenylyl-sulfa 95.1 0.0092 3.1E-07 54.5 2.8 20 102-121 16-35 (186)
444 1ko7_A HPR kinase/phosphatase; 95.1 0.011 3.6E-07 59.2 3.4 33 89-121 129-166 (314)
445 1z06_A RAS-related protein RAB 95.1 0.013 4.4E-07 53.4 3.7 23 99-121 20-42 (189)
446 3q5d_A Atlastin-1; G protein, 95.1 0.028 9.4E-07 59.1 6.6 70 265-334 70-154 (447)
447 4dcu_A GTP-binding protein ENG 95.1 0.01 3.5E-07 62.7 3.4 60 263-332 24-83 (456)
448 2rhm_A Putative kinase; P-loop 95.1 0.0092 3.1E-07 54.5 2.6 19 102-120 8-26 (193)
449 2a5j_A RAS-related protein RAB 95.1 0.013 4.4E-07 53.5 3.6 23 99-121 21-43 (191)
450 1vg8_A RAS-related protein RAB 95.1 0.013 4.5E-07 53.9 3.7 24 99-122 8-31 (207)
451 3oes_A GTPase rhebl1; small GT 95.0 0.012 4.3E-07 54.1 3.5 24 99-122 24-47 (201)
452 1sxj_C Activator 1 40 kDa subu 95.0 0.0034 1.2E-07 63.6 -0.5 20 102-121 49-68 (340)
453 2qtf_A Protein HFLX, GTP-bindi 95.0 0.0094 3.2E-07 61.1 2.8 21 102-122 182-202 (364)
454 2il1_A RAB12; G-protein, GDP, 95.0 0.014 4.7E-07 53.5 3.7 26 97-122 24-49 (192)
455 1zd9_A ADP-ribosylation factor 95.0 0.014 4.8E-07 53.2 3.7 24 98-121 21-44 (188)
456 3dz8_A RAS-related protein RAB 95.0 0.012 4.2E-07 53.6 3.2 24 98-121 22-45 (191)
457 1tq4_A IIGP1, interferon-induc 95.0 0.0012 4.2E-08 68.8 -4.0 125 201-337 72-202 (413)
458 2z0h_A DTMP kinase, thymidylat 95.0 0.011 3.6E-07 54.3 2.7 19 102-120 3-21 (197)
459 2ew1_A RAS-related protein RAB 95.0 0.014 4.7E-07 54.2 3.6 23 99-121 26-48 (201)
460 2cjw_A GTP-binding protein GEM 95.0 0.015 5.1E-07 53.4 3.7 23 99-121 6-28 (192)
461 3iev_A GTP-binding protein ERA 95.0 0.016 5.5E-07 57.8 4.2 25 99-123 10-34 (308)
462 2hjg_A GTP-binding protein ENG 94.9 0.016 5.3E-07 60.9 4.3 60 263-332 4-63 (436)
463 2o52_A RAS-related protein RAB 94.9 0.014 4.7E-07 53.9 3.5 23 99-121 25-47 (200)
464 2dyk_A GTP-binding protein; GT 94.9 0.011 3.9E-07 51.7 2.8 22 101-122 3-24 (161)
465 1x3s_A RAS-related protein RAB 94.9 0.015 5.1E-07 52.9 3.6 23 100-122 16-38 (195)
466 2px0_A Flagellar biosynthesis 94.9 0.0094 3.2E-07 59.3 2.4 20 102-121 108-127 (296)
467 2h57_A ADP-ribosylation factor 94.9 0.013 4.3E-07 53.4 3.1 23 100-122 22-44 (190)
468 3a1s_A Iron(II) transport prot 94.9 0.015 5.1E-07 56.5 3.8 23 100-122 6-28 (258)
469 3geh_A MNME, tRNA modification 94.9 0.0078 2.7E-07 63.8 1.8 61 263-333 225-285 (462)
470 3bwd_D RAC-like GTP-binding pr 94.9 0.013 4.4E-07 52.6 3.1 22 100-121 9-30 (182)
471 3j2k_7 ERF3, eukaryotic polype 94.9 0.022 7.6E-07 59.8 5.3 23 262-284 17-39 (439)
472 3reg_A RHO-like small GTPase; 94.9 0.015 5.2E-07 53.1 3.6 24 99-122 23-46 (194)
473 2bcg_Y Protein YP2, GTP-bindin 94.9 0.014 4.6E-07 54.0 3.3 24 99-122 8-31 (206)
474 3p26_A Elongation factor 1 alp 94.9 0.017 5.9E-07 61.4 4.6 26 260-285 31-56 (483)
475 2f7s_A C25KG, RAS-related prot 94.9 0.017 5.9E-07 53.7 4.0 24 99-122 25-48 (217)
476 2h17_A ADP-ribosylation factor 94.9 0.014 4.6E-07 52.8 3.2 23 100-122 22-44 (181)
477 3c5c_A RAS-like protein 12; GD 94.9 0.016 5.3E-07 52.9 3.7 23 99-121 21-43 (187)
478 3fb4_A Adenylate kinase; psych 94.9 0.011 3.9E-07 55.2 2.7 19 102-120 3-21 (216)
479 1zj6_A ADP-ribosylation factor 94.9 0.014 4.8E-07 53.0 3.3 25 97-121 14-38 (187)
480 2hjg_A GTP-binding protein ENG 94.9 0.0079 2.7E-07 63.2 1.7 62 262-333 175-236 (436)
481 3i8s_A Ferrous iron transport 94.9 0.015 5.1E-07 57.0 3.6 23 100-122 4-26 (274)
482 4a9a_A Ribosome-interacting GT 94.8 0.021 7.3E-07 58.6 4.8 63 259-332 69-131 (376)
483 2qu8_A Putative nucleolar GTP- 94.8 0.017 5.8E-07 54.6 3.9 26 97-122 27-52 (228)
484 2atv_A RERG, RAS-like estrogen 94.8 0.015 5.2E-07 53.2 3.5 24 99-122 28-51 (196)
485 2qpt_A EH domain-containing pr 94.8 0.017 5.8E-07 62.5 4.3 25 263-287 66-90 (550)
486 3o47_A ADP-ribosylation factor 94.8 0.014 4.9E-07 58.8 3.4 55 262-330 165-219 (329)
487 1m7g_A Adenylylsulfate kinase; 94.8 0.012 4.1E-07 55.0 2.7 20 102-121 28-47 (211)
488 2qtf_A Protein HFLX, GTP-bindi 94.8 0.018 6.1E-07 59.0 4.2 59 264-333 181-239 (364)
489 2iwr_A Centaurin gamma 1; ANK 94.8 0.013 4.4E-07 52.6 2.8 23 99-121 7-29 (178)
490 2gco_A H9, RHO-related GTP-bin 94.8 0.016 5.6E-07 53.4 3.6 26 96-121 22-47 (201)
491 4bas_A ADP-ribosylation factor 94.8 0.019 6.5E-07 52.4 3.9 23 100-122 18-40 (199)
492 4djt_A GTP-binding nuclear pro 94.8 0.01 3.5E-07 55.4 2.1 24 98-121 10-33 (218)
493 2p5s_A RAS and EF-hand domain 94.8 0.016 5.5E-07 53.3 3.4 24 99-122 28-51 (199)
494 1nrj_B SR-beta, signal recogni 94.8 0.014 4.8E-07 54.4 3.1 23 100-122 13-35 (218)
495 2j1l_A RHO-related GTP-binding 94.8 0.016 5.6E-07 54.1 3.5 23 99-121 34-56 (214)
496 1h65_A Chloroplast outer envel 94.8 0.018 6E-07 56.2 3.9 24 99-122 39-62 (270)
497 3hr8_A Protein RECA; alpha and 94.8 0.0027 9.3E-08 64.9 -2.1 20 101-120 62-82 (356)
498 3cph_A RAS-related protein SEC 94.8 0.016 5.5E-07 53.6 3.4 24 99-122 20-43 (213)
499 2v54_A DTMP kinase, thymidylat 94.7 0.013 4.6E-07 54.0 2.8 21 102-122 7-27 (204)
500 3def_A T7I23.11 protein; chlor 94.7 0.017 5.9E-07 56.1 3.6 24 99-122 36-59 (262)
No 1
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=352.51 Aligned_cols=290 Identities=42% Similarity=0.671 Sum_probs=151.0
Q ss_pred CCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecC
Q psy91 238 IPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERG 317 (541)
Q Consensus 238 ~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~g 317 (541)
...++||+.+++.++.++.+++|+.|+++++|.+|+|||||+|+|+....+.....+..+.....++.+....+.+..+|
T Consensus 13 ~~~~~v~~~~l~~~~~~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~ 92 (361)
T 2qag_A 13 ETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERG 92 (361)
T ss_dssp --------CCHHHHHHTHHHHHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----C
T ss_pred CCCceEEeccchHHhCCeeecCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCC
Confidence 44678999999999999999999999999999999999999999987764443332222222345677766666777888
Q ss_pred eeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc---------ee--ecc--c---cchhhh-hccc
Q psy91 318 VKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT---------TT--IEK--K---SMDIEE-RGVK 380 (541)
Q Consensus 318 v~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt---------~~--i~~--~---~~di~~-~~l~ 380 (541)
....+.|+||||+||..++..+|.++.+||+++|..|+.++....|. ++ +.. + ..++.. ..++
T Consensus 93 ~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~ 172 (361)
T 2qag_A 93 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH 172 (361)
T ss_dssp EEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC
T ss_pred cccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc
Confidence 89999999999999999999999999999999999999988765421 11 111 2 223322 2466
Q ss_pred ceeEEEcCCCCCCCCCcHHHHH---HHHHHHHHHhhhccCc--ccccc----------------cccccchhhh----hh
Q psy91 381 LRLTVVDTPGFGDSINSEESWR---ACCSYIDDQFRQYFND--ESGLN----------------RKNIVDNRFA----TN 435 (541)
Q Consensus 381 ~rvnvIpvi~k~D~lt~~e~~~---~i~~~i~~~~~~~~~~--e~~~~----------------~~~i~d~~v~----~~ 435 (541)
..+++|++++|+|.++..++.. .+.+++......++.- ..+.+ ...+..+... +.
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~~vv~s~~~~~~~g~~ 252 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKK 252 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTCSCEECCCSEEC------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcCCCCEeCCCCccccCCeE
Confidence 7789999999999999776522 3333332211122210 00000 0011111110 22
Q ss_pred hccCCCCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccCCcccccCCCCCCCCchhhHH
Q psy91 436 RHRNNAPT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAPDGLITETDR 514 (541)
Q Consensus 436 ~~~~~~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (541)
..+|.||| +|+|||++||||++||++|| +||+||++.|+++|||+||+++|.+++... ...+.++++
T Consensus 253 ~~gr~ypwg~~~ven~~h~df~~Lr~~l~-~~~~dl~~~t~~~~ye~yr~~~l~~~~~~~-----------~~~~~~~~~ 320 (361)
T 2qag_A 253 VRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKV-----------ENEDMNKDQ 320 (361)
T ss_dssp CEEECCSSCCEESSCC-CCTHHHHHHHHH-HCCGGGTHHHHTTTHHHHHTTTC---------------------------
T ss_pred EEEEecCCceEecCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----------cccchhhhh
Confidence 34568999 99999999999999999999 999999999999999999999999876421 113346899
Q ss_pred HhhhchHHHHHHHHHHHHHHHhHhh
Q psy91 515 LLLEKDEELVKSTIIISALNAPKQQ 539 (541)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (541)
++++||+|++|||+||++||++|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (361)
T 2qag_A 321 ILLEKEAELRRMQEMIARMQAQMQM 345 (361)
T ss_dssp -------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985
No 2
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=341.61 Aligned_cols=292 Identities=32% Similarity=0.497 Sum_probs=157.0
Q ss_pred CeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 242 DIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 242 ~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
+++|...+.+-...+++.|..|+++++|++|+|||||+|.|++..+.. ...... .....+....+...+.++.+.
T Consensus 22 ~~~y~~~~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g-~~~~~~----~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 22 HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEG-EPATHT----QPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC-CC--CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------C----CSSCEEEEEEEEEEC--CEEE
T ss_pred EEEECCeecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccC-CcCCCC----CccceEeeEEEEeecCccccc
Confidence 566655444456678899999999999999999999999998874221 111111 111222333344566777889
Q ss_pred EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc-----------eee-------ccccchhhh-hcccce
Q psy91 322 LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT-----------TTI-------EKKSMDIEE-RGVKLR 382 (541)
Q Consensus 322 L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt-----------~~i-------~~~~~di~~-~~l~~r 382 (541)
++++|+||+|+.+++..+|.+|.+||++++..||.++.+..++ .+. .....|++. +.++.+
T Consensus 97 ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~ 176 (427)
T 2qag_B 97 LTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSK 176 (427)
T ss_dssp EEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSC
T ss_pred cchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhC
Confidence 9999999999998888999999999999999999988544321 111 234455555 357788
Q ss_pred eEEEcCCCCCCCCCcHHHHHHHHHHHHHHhh----hcc--C--ccc----------ccccccccchhhh----hhhccCC
Q psy91 383 LTVVDTPGFGDSINSEESWRACCSYIDDQFR----QYF--N--DES----------GLNRKNIVDNRFA----TNRHRNN 440 (541)
Q Consensus 383 vnvIpvi~k~D~lt~~e~~~~i~~~i~~~~~----~~~--~--~e~----------~~~~~~i~d~~v~----~~~~~~~ 440 (541)
++||++++|+|+|++.|+ ..+.+.|.+.+. .++ . |+. .++...+..+.+. +.+.+|.
T Consensus 177 ~~vI~Vi~KtD~Lt~~E~-~~l~~~I~~~L~~~gi~I~~is~~d~~~~~~~~~~~~~~PFavvgs~~~~~~~g~~vrgR~ 255 (427)
T 2qag_B 177 VNIIPIIAKADAISKSEL-TKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMRARQ 255 (427)
T ss_dssp SEEEEEESCGGGSCHHHH-HHHHHHHHHHHBTTBCCCCCCC-----CCSHHHHHTTC-CCBCCC--------CCCC----
T ss_pred CCEEEEEcchhccchHHH-HHHHHHHHHHHHHcCCcEEecCCCchhHHHHHhhhcCCCCeEEECCCCeeeeCCcEEEEec
Confidence 999999999999999886 333333333222 111 1 111 1122334343332 2345678
Q ss_pred CCc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhccccCC--------------------cccc
Q psy91 441 APT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGD--------------------RGKL 499 (541)
Q Consensus 441 ~p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~~~--------------------~~~~ 499 (541)
||| +||||||+||||++||+|||++||+||++.|+++|||+||+++|+.++.... ..++
T Consensus 256 ypWG~~even~~h~DF~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (427)
T 2qag_B 256 YPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGEL 335 (427)
T ss_dssp -CCCCCC-----CCSSHHHHHHHHHTSTTHHHHHHHHHTTHHHHHHHHHHHC----------------------------
T ss_pred CCCceEEeCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccchhHHHHHHhHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999998764320 0222
Q ss_pred cC-CCCC----CCCchhhHHHhhhchHHH-HHHHHHHHHHHHhHhh
Q psy91 500 KK-DSAP----DGLITETDRLLLEKDEEL-VKSTIIISALNAPKQQ 539 (541)
Q Consensus 500 ~~-~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 539 (541)
++ +.+| .+.+.|+|..|++.|+|| +++++|..++++|++.
T Consensus 336 ~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~ 381 (427)
T 2qag_B 336 QKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKK 381 (427)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2333 277889999999999999 7888888888887663
No 3
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-37 Score=323.01 Aligned_cols=297 Identities=38% Similarity=0.620 Sum_probs=151.0
Q ss_pred CCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee
Q psy91 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320 (541)
Q Consensus 241 ~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~ 320 (541)
..+++.+++.++.++.+.+|+.|+++++|++|+|||||+|.|++........ ...+.....++.+....+.+.+.++.+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~-~~~~~~~~~t~~~~~i~~v~q~~~~~~ 88 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRIKKTVQVEQSKVLIKEGGVQL 88 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCC-CSCC-----CCEEEEEECC------CE
T ss_pred CcEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCC-CCcccCCccceeeeeEEEEEecCCccc
Confidence 4577888888888889999999999999999999999999999765321111 111111123344444444556778888
Q ss_pred eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCccee---------e--c-c-ccch---hhh-hccccee
Q psy91 321 RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTT---------I--E-K-KSMD---IEE-RGVKLRL 383 (541)
Q Consensus 321 ~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~---------i--~-~-~~~d---i~~-~~l~~rv 383 (541)
.++|+|+||+|+..++..+|.++.+||++++..|+.++..+.|... + . + +.++ +.. ..++..+
T Consensus 89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v 168 (418)
T 2qag_C 89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKV 168 (418)
T ss_dssp EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTS
T ss_pred ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccC
Confidence 9999999999998888889999999999999999987655443311 1 1 1 2232 222 3456689
Q ss_pred EEEcCCCCCCCCCcHHHH---HHHHHHHHHHhhhccC-c-cc--c---c--------ccccccchhhh----hhhccCCC
Q psy91 384 TVVDTPGFGDSINSEESW---RACCSYIDDQFRQYFN-D-ES--G---L--------NRKNIVDNRFA----TNRHRNNA 441 (541)
Q Consensus 384 nvIpvi~k~D~lt~~e~~---~~i~~~i~~~~~~~~~-~-e~--~---~--------~~~~i~d~~v~----~~~~~~~~ 441 (541)
++|++++|+|.++..++. ..+.+++......++. . .. . . +...+..+... +.+.+|.|
T Consensus 169 ~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPfavv~s~~~~~~~g~~vr~R~y 248 (418)
T 2qag_C 169 NIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQY 248 (418)
T ss_dssp EEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CCEEECC-------------CEEC
T ss_pred cEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCcceeecceeEecCCceeecccc
Confidence 999999999999987762 3455555554333321 1 00 0 0 11111122111 23445678
Q ss_pred Cc-ccccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhc---cccC-Cc--------------------
Q psy91 442 PT-PSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQI---SQRG-DR-------------------- 496 (541)
Q Consensus 442 p~-~veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~---~~~~-~~-------------------- 496 (541)
|| +|+|||++||||++||++||++||+||++.|+++|||+||+++|..+ +... ++
T Consensus 249 ~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~~Ye~yR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (418)
T 2qag_C 249 PWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHV 328 (418)
T ss_dssp SSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHHTHHHHHHHHCC--------------------------------
T ss_pred cceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCccccccccccCCChHHHHHHHHHHHH
Confidence 88 99999999999999999999999999999999999999999999987 3211 10
Q ss_pred ccccC-CCCC----CCCchhhHHHhhhchHHH-HHHHHHHHHHHHhHh
Q psy91 497 GKLKK-DSAP----DGLITETDRLLLEKDEEL-VKSTIIISALNAPKQ 538 (541)
Q Consensus 497 ~~~~~-~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 538 (541)
.|+++ |.+| ++.+.++|..+++.|+|| +++.+|...+++|.+
T Consensus 329 ~~~~~~e~~~~~~f~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~ 376 (418)
T 2qag_C 329 AKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHK 376 (418)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333 3444 378899999999999999 888888877777654
No 4
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=299.95 Aligned_cols=227 Identities=35% Similarity=0.566 Sum_probs=150.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhh
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESW 340 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~ 340 (541)
|.|+++++|++|+|||||+|+|++......-.+........++.......+..++.++.+.++++|+||+|+..++..+|
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 67999999999999999999999764221111000000011111112222334677888999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhcccCcc------------eeec-----cccchhhh-hcccceeEEEcCCCCCCCCCcHHHH-
Q psy91 341 RACCSYIDDQFRQYFNDENRQGKT------------TTIE-----KKSMDIEE-RGVKLRLTVVDTPGFGDSINSEESW- 401 (541)
Q Consensus 341 ~~i~~yI~~~~~~~l~~e~~~~rt------------~~i~-----~~~~di~~-~~l~~rvnvIpvi~k~D~lt~~e~~- 401 (541)
+++..|++.++.+++.++...++. .++. ..+.|++. ..++.++++|++++|+|.++.+|+.
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~lt~~e~~~ 160 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEEKSE 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEeccccCCHHHHHH
Confidence 999999999999998877544332 1111 22334443 3466669999999999999998862
Q ss_pred --HHHHHHHHHHhhhccC----ccc-c------------cccccccchhhh----hhhccCCCCc-ccccCCCCcccHHH
Q psy91 402 --RACCSYIDDQFRQYFN----DES-G------------LNRKNIVDNRFA----TNRHRNNAPT-PSQVENPKHSDFNK 457 (541)
Q Consensus 402 --~~i~~~i~~~~~~~~~----~e~-~------------~~~~~i~d~~v~----~~~~~~~~p~-~veven~~h~DF~~ 457 (541)
+.|.+.+.++...++. +++ + .+...+.++... +.+.+|.||| +|||||++||||++
T Consensus 161 ~k~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~pfavv~s~~~~~~~g~~~~~r~y~wg~~~v~n~~h~df~~ 240 (270)
T 3sop_A 161 FKQRVRKELEVNGIEFYPQKEFDEDLEDKTENDKIRQESMPFAVVGSDKEYQVNGKRVLGRKTPWGIIEVENLNHCEFAL 240 (270)
T ss_dssp HHHHHHHHHHHTTCCCSSCSCC---CHHHHHHHHHHHTTCSEECCCCCCEEEETTEEEEEECCCC-CEESSCTTTCSHHH
T ss_pred HHHHHHHHHHHcCccccCCCCCCcchHHHHHHHHHHhcCCCeEEEecceEEEeCCcEEEEeecCceEEEeCCcccccHHH
Confidence 3455555554433332 111 0 011122222211 2234568999 99999999999999
Q ss_pred HHHHHhhhhHHHHHHhhhhhhHHhhHHHHH
Q psy91 458 LRNMLISTHMQDLKDVTEDVHYENFRAQCL 487 (541)
Q Consensus 458 Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l 487 (541)
||+|||++|||||||.|+++|||+||+++|
T Consensus 241 lr~~l~~~~~~~l~~~t~~~~ye~~r~~~l 270 (270)
T 3sop_A 241 LRDFVIRTHLQDLKEVTHNIHYETYRAKRL 270 (270)
T ss_dssp HHHHHHTTTHHHHHHHHHHTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999986
No 5
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=100.00 E-value=3e-35 Score=294.60 Aligned_cols=232 Identities=41% Similarity=0.671 Sum_probs=157.5
Q ss_pred hhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccc
Q psy91 257 VKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 336 (541)
Q Consensus 257 vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~ 336 (541)
.++|+.|+++++|.+|+|||||+|+|+..+.+.... +..+.....++.+......+.++|...++.|+||||+|+..++
T Consensus 3 ~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~ 81 (274)
T 3t5d_A 3 LGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 81 (274)
T ss_dssp ----CEEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC
T ss_pred CcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCC-CCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc
Confidence 578999999999999999999999999887554432 1223334566777777777888898999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhcccCcce-----------eec-----cccchhhh-hcccceeEEEcCCCCCCCCCcHH
Q psy91 337 EESWRACCSYIDDQFRQYFNDENRQGKTT-----------TIE-----KKSMDIEE-RGVKLRLTVVDTPGFGDSINSEE 399 (541)
Q Consensus 337 ~~~~~~i~~yI~~~~~~~l~~e~~~~rt~-----------~i~-----~~~~di~~-~~l~~rvnvIpvi~k~D~lt~~e 399 (541)
..+|.++.+||+++|..|+.++.+..|.. .+. ....++.. ..++.++++|++++|+|.++..+
T Consensus 82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHH
Confidence 99999999999999999999987765431 111 12233332 23455889999999999998877
Q ss_pred HH---HHHHHHHHHHhhhccC-c---cccc-----------ccccccchhh----hhhhccCCCCc-ccccCCCCcccHH
Q psy91 400 SW---RACCSYIDDQFRQYFN-D---ESGL-----------NRKNIVDNRF----ATNRHRNNAPT-PSQVENPKHSDFN 456 (541)
Q Consensus 400 ~~---~~i~~~i~~~~~~~~~-~---e~~~-----------~~~~i~d~~v----~~~~~~~~~p~-~veven~~h~DF~ 456 (541)
.. ..+.+.+...-..++. . ..+. ....+..+.. .+.+++|.||| +|||||++||||.
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~~~~~~~r~y~wg~~~ve~~~~~df~ 241 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDFT 241 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEECCCCCCC--------CEEECSSCEEESSCTTTCSHH
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEEEEeeeEEeeCCeEEEeeecccceEEecCcccccHH
Confidence 52 2333333322222221 0 0000 0111111111 13455678999 9999999999999
Q ss_pred HHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhh
Q psy91 457 KLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQ 489 (541)
Q Consensus 457 ~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~ 489 (541)
+||++||++|||||++.|+++|||+||+++|++
T Consensus 242 ~lr~~l~~~~~~~l~~~t~~~~ye~yr~~~l~~ 274 (274)
T 3t5d_A 242 ILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAA 274 (274)
T ss_dssp HHHHTTTTTTHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999973
No 6
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=100.00 E-value=2.8e-33 Score=283.93 Aligned_cols=245 Identities=44% Similarity=0.696 Sum_probs=136.0
Q ss_pred ccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcC
Q psy91 248 LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDT 327 (541)
Q Consensus 248 ~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~De 327 (541)
++.++.++.+.+++.|+++++|++|+|||||+|.|++.........+.......+++.+....+.+++.+..+.++++|+
T Consensus 4 l~~~~~~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt 83 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDT 83 (301)
T ss_dssp --------------CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEE
T ss_pred CcceECCEEEEcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhh
Confidence 45567788899999999999999999999999999876434332211100011223333334455567788899999999
Q ss_pred CCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc---------ee--ec--cccchhh---h-hcccceeEEEcCCC
Q psy91 328 PGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT---------TT--IE--KKSMDIE---E-RGVKLRLTVVDTPG 390 (541)
Q Consensus 328 Pg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt---------~~--i~--~~~~di~---~-~~l~~rvnvIpvi~ 390 (541)
||+|+..++...|.++.++|++++..|+.+++...|. ++ +. .+.+|.. . ..++..++++++++
T Consensus 84 ~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~ 163 (301)
T 2qnr_A 84 PGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIA 163 (301)
T ss_dssp C-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEEC
T ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 9999988777789999999999999999988653211 11 11 1223322 2 23455678999999
Q ss_pred CCCCCCcHHHH---HHHHHHHHHHhhhccCccc---cc---------------ccccccchhhh----hhhccCCCCc-c
Q psy91 391 FGDSINSEESW---RACCSYIDDQFRQYFNDES---GL---------------NRKNIVDNRFA----TNRHRNNAPT-P 444 (541)
Q Consensus 391 k~D~lt~~e~~---~~i~~~i~~~~~~~~~~e~---~~---------------~~~~i~d~~v~----~~~~~~~~p~-~ 444 (541)
|.|.++..++. +.+.+++.+....++.-.. .. ....+..+... +..++|.||| +
T Consensus 164 K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~~v~e~f~~l~~~i~~~~p~avigs~~~~~~~g~~~~~r~y~wg~ 243 (301)
T 2qnr_A 164 KADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGV 243 (301)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC---------CHHHHHHHHTTCSEECCCCCCBCC-----CBEEEETTEE
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccccccHHHHHHHHHhhcCCCceEECCCceEecCCcEEeeEcCCCce
Confidence 99999976642 3445555443223321000 00 00111111111 2234568999 9
Q ss_pred cccCCCCcccHHHHHHHHhhhhHHHHHHhhhhhhHHhhHHHHHhhcccc
Q psy91 445 SQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQR 493 (541)
Q Consensus 445 veven~~h~DF~~Lr~~L~~~~~~dL~~~T~~~~YE~yR~~~l~~~~~~ 493 (541)
|+||||+||||++||+||| +||+|||+.|+++|||+||+++|.+++..
T Consensus 244 ~~v~n~~h~df~~lr~~l~-~~~~~l~~~t~~~~ye~~r~~~l~~~~~~ 291 (301)
T 2qnr_A 244 VEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRK 291 (301)
T ss_dssp EETTCTTTCSHHHHHHHHH-HTHHHHHHHHHHTHHHHHHHHHHHC----
T ss_pred EeeCCCccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999 99999999999999999999999988753
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.94 E-value=1.6e-28 Score=252.74 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=156.7
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|.++||+++|++..+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+... ......
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~---i~G~~i~~~--~~~~~~ 77 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS---LSGKTIFSK--NTNLPV 77 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEEESS--SCBCCG
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE---ECCEECccc--ccccch
Confidence 3689999999999999999999999 9999999999999999954 67889999 889844211 111223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.+|||||++.++|++ ||+||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 78 ~~r~ig~vfQ~~~l~p~l------tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~--------------------- 130 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHL------TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE--------------------- 130 (359)
T ss_dssp GGSCCEEECTTCCCCTTS------CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG---------------------
T ss_pred hhCCEEEEeCCCcCCCCC------CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch---------------------
Confidence 456799999999999999 99999999843334445566677888888888864
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++++..+|+|++|+++|+++
T Consensus 131 ----------------------------------------------------------~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 131 ----------------------------------------------------------LAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp ----------------------------------------------------------GTTSCGGGSCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------HhcCChhhCCHHHHHHHHHHHH
Confidence 2334566799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +|+++|+|||..|.+..... ++.+.+.+.. +.+.++++.+|+++.. ..++.++.++.
T Consensus 153 L~~------~P~lLLLDEPts~LD~~~r~-----------~l~~~l~~~~~~~g~tvi~vTHd~~ea-~~~aDri~vl~ 213 (359)
T 3fvq_A 153 LAP------DPELILLDEPFSALDEQLRR-----------QIREDMIAALRANGKSAVFVSHDREEA-LQYADRIAVMK 213 (359)
T ss_dssp HTT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHHTTCEEEEECCCHHHH-HHHCSEEEEEE
T ss_pred HHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHCCEEEEEE
Confidence 998 99999999997775544332 5555555443 3588999999998743 34667776664
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.94 E-value=3.5e-28 Score=251.83 Aligned_cols=197 Identities=18% Similarity=0.189 Sum_probs=156.8
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|++..+|++|||+| +|+|||||||||||++|+| .+++|+|+ ++|+.+ ...+ ..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~---i~G~~~----~~~~--~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF---IGEKRM----NDTP--PA 73 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTCC--GG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE---ECCEEC----CCCC--HH
Confidence 489999999999999999999999 9999999999999999954 67889999 888833 2222 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||++.++|++ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 74 ~r~ig~VfQ~~~l~p~l------tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 125 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHL------SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH---------------------- 125 (381)
T ss_dssp GSCEEEECTTCCCCTTS------CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG----------------------
T ss_pred HCCEEEEecCCcCCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch----------------------
Confidence 35799999999999999 99999999843334455666778888888888764
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++++..+|+|++|+++|++++
T Consensus 126 ---------------------------------------------------------~~~r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 126 ---------------------------------------------------------LLDRKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ---------------------------------------------------------GTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------hhcCChhHCCHHHHHHHHHHHHH
Confidence 22345667999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||..+.+.... .++.++|.+..+. +.++++.+|+++.. ..++.++.++.
T Consensus 149 ~~------~P~lLLLDEPts~LD~~~~-----------~~l~~~l~~l~~~~g~tii~vTHd~~ea-~~~aDri~vl~ 208 (381)
T 3rlf_A 149 VA------EPSVFLLDEPLSNLDAALR-----------VQMRIEISRLHKRLGRTMIYVTHDQVEA-MTLADKIVVLD 208 (381)
T ss_dssp HH------CCSEEEEESTTTTSCHHHH-----------HHHHHHHHHHHHHHCCEEEEECSCHHHH-HHHCSEEEEEE
T ss_pred Hc------CCCEEEEECCCcCCCHHHH-----------HHHHHHHHHHHHhCCCEEEEEECCHHHH-HHhCCEEEEEE
Confidence 98 9999999999777554433 2677777777554 88999999987743 34667777664
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.94 E-value=4.6e-28 Score=249.44 Aligned_cols=205 Identities=18% Similarity=0.229 Sum_probs=158.6
Q ss_pred CCCceeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceeccc
Q psy91 76 DRDYIGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVA 143 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~ 143 (541)
+.+.|+++||++.|+. ..+|++|||+| ||+|||||||||||++|+ ..+++|+|. ++|+++.. ..
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~---i~G~~i~~-~~ 96 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL---VDGQELTT-LS 96 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEECSS-CC
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEE---ECCEECCc-CC
Confidence 3457999999999964 46999999999 999999999999999994 467889999 88884321 11
Q ss_pred ccccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 144 GTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 144 ~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
....+..++.+|||||++.+++.+ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 97 ~~~~~~~r~~Ig~v~Q~~~l~~~~------TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~--------------- 155 (366)
T 3tui_C 97 ESELTKARRQIGMIFQHFNLLSSR------TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD--------------- 155 (366)
T ss_dssp HHHHHHHHTTEEEECSSCCCCTTS------CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG---------------
T ss_pred HHHHHHHhCcEEEEeCCCccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch---------------
Confidence 111122346799999999999999 99999998733334455666778888898888854
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++++..+|+|++|+
T Consensus 156 ----------------------------------------------------------------~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 156 ----------------------------------------------------------------KHDSYPSNLSGGQKQR 171 (366)
T ss_dssp ----------------------------------------------------------------GTTCCTTTSCHHHHHH
T ss_pred ----------------------------------------------------------------HhcCChhhCCHHHHHH
Confidence 2234567899999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +|+++|+|||+.|.+..... ++.++|.+..+. +.++++.+|+++... .++.+
T Consensus 172 VaIArAL~~------~P~lLLlDEPTs~LD~~~~~-----------~i~~lL~~l~~~~g~Tii~vTHdl~~~~-~~aDr 233 (366)
T 3tui_C 172 VAIARALAS------NPKVLLCDQATSALDPATTR-----------SILELLKDINRRLGLTILLITHEMDVVK-RICDC 233 (366)
T ss_dssp HHHHHHTTT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHHSCCEEEEEESCHHHHH-HHCSE
T ss_pred HHHHHHHhc------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEecCHHHHH-HhCCE
Confidence 999999998 99999999998886655443 677777777544 889999999987543 46677
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 234 v~vl~ 238 (366)
T 3tui_C 234 VAVIS 238 (366)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77664
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.94 E-value=4.9e-28 Score=234.99 Aligned_cols=201 Identities=18% Similarity=0.209 Sum_probs=151.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+.+|+|. ++|..+.. ........
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~~~-~~~~~~~~ 78 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF---LEGKEVDY-TNEKELSL 78 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEE---ETTEECCS-SCHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEECCC-CCHHHHHH
Confidence 4589999999999889999999999 9999999999999999955 57789999 88873211 01000111
Q ss_pred -ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 -RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 -~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
+++.++||+|+..+++.+ ||.||+.++....+....+..+++.++++.+|+.+
T Consensus 79 ~~~~~i~~v~q~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------- 132 (224)
T 2pcj_A 79 LRNRKLGFVFQFHYLIPEL------TALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-------------------- 132 (224)
T ss_dssp HHHHHEEEECSSCCCCTTS------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT--------------------
T ss_pred HHhCcEEEEecCcccCCCC------CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch--------------------
Confidence 225799999999999999 99999988622122222334456777787777754
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
+.++.+..+|+|++|++.|++
T Consensus 133 -----------------------------------------------------------~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 133 -----------------------------------------------------------KLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp -----------------------------------------------------------CTTCCGGGSCHHHHHHHHHHH
T ss_pred -----------------------------------------------------------hhhCChhhCCHHHHHHHHHHH
Confidence 122345568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +|+++|+|||..|.+..+.. .+.++|.+..+.++++++.+|+.+.. .++.++.++
T Consensus 154 al~~------~p~lllLDEPt~~LD~~~~~-----------~~~~~l~~l~~~g~tvi~vtHd~~~~--~~~d~v~~l 212 (224)
T 2pcj_A 154 ALAN------EPILLFADEPTGNLDSANTK-----------RVMDIFLKINEGGTSIVMVTHERELA--ELTHRTLEM 212 (224)
T ss_dssp HTTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHH--TTSSEEEEE
T ss_pred HHHc------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 9998 99999999998876655443 66677777655588999999998764 466777665
No 11
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.93 E-value=5e-27 Score=243.32 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=147.7
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i----~~~~--~~ 81 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY---FGDRDV----TYLP--PK 81 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--GG
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEE---ECCEEC----CCCC--hh
Confidence 589999999999889999999999 9999999999999999955 57789999 888833 2222 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||+..++|++ ||+||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 82 ~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 133 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHM------TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE---------------------- 133 (372)
T ss_dssp GGTEEEEEC------CC------CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG----------------------
T ss_pred hCcEEEEecCcccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh----------------------
Confidence 35799999999999999 99999999833233344555667888888888764
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|+++|++++
T Consensus 134 ---------------------------------------------------------~~~r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 134 ---------------------------------------------------------LLNRYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp ---------------------------------------------------------GTTSCTTTCCSSCHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhcCChhhCCHHHHHHHHHHHHH
Confidence 23445678999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||..+.+.... .++.++|.+..+. +.++++.+|+.+.. ..++.++.++.
T Consensus 157 ~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~vl~ 216 (372)
T 1v43_A 157 VV------EPDVLLMDEPLSNLDAKLR-----------VAMRAEIKKLQQKLKVTTIYVTHDQVEA-MTMGDRIAVMN 216 (372)
T ss_dssp TT------CCSEEEEESTTTTSCHHHH-----------HHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred hc------CCCEEEEcCCCccCCHHHH-----------HHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 98 9999999999777554433 2666777766544 78999999987643 34666666664
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=1.2e-27 Score=233.97 Aligned_cols=201 Identities=16% Similarity=0.222 Sum_probs=150.4
Q ss_pred eeeecccccccc----cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
|+++||+++|++ ..+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|..+.. ......
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~~~~-~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY---IDNIKTND-LDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEECTT-CCHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE---ECCEEccc-CCHHHH
Confidence 688999999974 46999999999 9999999999999999944 67889999 88873211 111111
Q ss_pred -ccccccEEEEeCCCccccccccccCCCcccceecccccc---chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 148 -RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE---QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 148 -~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~---~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
..+++.+|||+|++.+++.+ ||.||+.++.... .....+..+++.++++.+|+.+.
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------------- 137 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLL------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER-------------- 137 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTS------CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG--------------
T ss_pred HHHhhccEEEEecCCccCCCC------cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh--------------
Confidence 11234699999999999999 9999998863211 22344455566777777776430
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
..++.+..+|+|++|+
T Consensus 138 ----------------------------------------------------------------~~~~~~~~LSgGq~QR 153 (235)
T 3tif_A 138 ----------------------------------------------------------------FANHKPNQLSGGQQQR 153 (235)
T ss_dssp ----------------------------------------------------------------GTTCCGGGSCHHHHHH
T ss_pred ----------------------------------------------------------------hhhCChhhCCHHHHHH
Confidence 1233456789999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-Ccceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +|+++|+|||+.|.+..+.. ++.+++.+..+. +.++++.+|++++. .++.+
T Consensus 154 v~iAral~~------~p~llllDEPts~LD~~~~~-----------~i~~~l~~l~~~~g~tvi~vtHd~~~~--~~~d~ 214 (235)
T 3tif_A 154 VAIARALAN------NPPIILADQPTWALDSKTGE-----------KIMQLLKKLNEEDGKTVVVVTHDINVA--RFGER 214 (235)
T ss_dssp HHHHHHHTT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHHHCCEEEEECSCHHHH--TTSSE
T ss_pred HHHHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHHcCCEEEEEcCCHHHH--HhCCE
Confidence 999999998 99999999998886655443 677777776554 88999999998853 46777
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 215 i~~l~ 219 (235)
T 3tif_A 215 IIYLK 219 (235)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77663
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.93 E-value=2.2e-27 Score=235.49 Aligned_cols=202 Identities=20% Similarity=0.196 Sum_probs=152.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..|+++||++.|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|..+. ........
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~i~--~~~~~~~~ 97 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII---IDGINLK--AKDTNLNK 97 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEESS--STTCCHHH
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE---ECCEECC--CccccHHH
Confidence 3689999999999889999999999 9999999999999999954 56789999 8887331 11111122
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccc-cccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT-LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~-~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++.+|||+|+..+++.+ ||+||+.++. ...+....+..+++..+++.+|+.+.
T Consensus 98 ~~~~i~~v~Q~~~l~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~------------------- 152 (263)
T 2olj_A 98 VREEVGMVFQRFNLFPHM------TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK------------------- 152 (263)
T ss_dssp HHHHEEEECSSCCCCTTS------CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-------------------
T ss_pred HhCcEEEEeCCCcCCCCC------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-------------------
Confidence 345799999999999999 9999998852 11122333445567777887777541
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.++.+..+|+|++|++.|++
T Consensus 153 ------------------------------------------------------------~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 153 ------------------------------------------------------------AHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp ------------------------------------------------------------TTSCGGGSCHHHHHHHHHHH
T ss_pred ------------------------------------------------------------hcCChhhCCHHHHHHHHHHH
Confidence 22345568999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++|+|||..|.+..+.. .+.++|.+..+.+.++++.+|+++... +++.++.++.
T Consensus 173 aL~~------~p~lllLDEPts~LD~~~~~-----------~~~~~l~~l~~~g~tvi~vtHd~~~~~-~~~d~v~~l~ 233 (263)
T 2olj_A 173 ALAM------EPKIMLFDEPTSALDPEMVG-----------EVLSVMKQLANEGMTMVVVTHEMGFAR-EVGDRVLFMD 233 (263)
T ss_dssp HHTT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HHHC------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEcCCHHHHH-HhCCEEEEEE
Confidence 9998 99999999998886655543 667777776555889999999977543 3566666663
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.93 E-value=3.6e-27 Score=243.24 Aligned_cols=197 Identities=17% Similarity=0.169 Sum_probs=153.4
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i----~~~~--~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY---FDDVLV----NDIP--PK 73 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--GG
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEE---ECCEEC----CCCC--hh
Confidence 478999999999889999999999 9999999999999999955 57789999 888833 2222 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||++.++|++ ||+||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 74 ~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 125 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHM------TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN---------------------- 125 (359)
T ss_dssp GTTEEEECSSCCCCTTS------CHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG----------------------
T ss_pred hCcEEEEecCcccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch----------------------
Confidence 45799999999999999 99999999733233444555567888888888764
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++++..+|+|++|+++|++++
T Consensus 126 ---------------------------------------------------------~~~r~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 126 ---------------------------------------------------------LLDRKPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ---------------------------------------------------------GTTSCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhcCChhhCCHHHHHHHHHHHHH
Confidence 22344567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++++|||..+.+.... .++.++|.+..+. +.++++.+|+.+.. ..++.++.++.
T Consensus 149 ~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tvi~vTHd~~~~-~~~adri~vl~ 208 (359)
T 2yyz_A 149 VK------QPKVLLFDEPLSNLDANLR-----------MIMRAEIKHLQQELGITSVYVTHDQAEA-MTMASRIAVFN 208 (359)
T ss_dssp TT------CCSEEEEESTTTTSCHHHH-----------HHHHHHHHHHHHHHCCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred Hc------CCCEEEEECCcccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEcCCHHHH-HHhCCEEEEEE
Confidence 98 9999999999777554433 2666677666543 78999999987643 34566666653
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.93 E-value=2.4e-27 Score=244.05 Aligned_cols=200 Identities=16% Similarity=0.211 Sum_probs=155.0
Q ss_pred CCCceeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 76 DRDYIGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 76 ~~~~i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
..+.|.++||+++| +++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i----~~~~ 83 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW---IGGKRV----TDLP 83 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTCC
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE---ECCEEC----CcCC
Confidence 34578999999999 8888999999999 9999999999999999955 57789999 888733 2211
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
..++.+|||||+..++|++ ||+||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 84 --~~~r~ig~v~Q~~~l~~~l------tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~------------------ 137 (355)
T 1z47_A 84 --PQKRNVGLVFQNYALFQHM------TVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES------------------ 137 (355)
T ss_dssp --GGGSSEEEECGGGCCCTTS------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG------------------
T ss_pred --hhhCcEEEEecCcccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh------------------
Confidence 2346799999999999999 99999999732223344455667888888888764
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
+.++++..+|+|++|+++|
T Consensus 138 -------------------------------------------------------------~~~r~~~~LSGGq~QRval 156 (355)
T 1z47_A 138 -------------------------------------------------------------YANRFPHELSGGQQQRVAL 156 (355)
T ss_dssp -------------------------------------------------------------GTTSCGGGSCHHHHHHHHH
T ss_pred -------------------------------------------------------------HhcCCcccCCHHHHHHHHH
Confidence 2234456799999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
+++++. +|+++|+|||..|.+..... ++.++|.+..+. +.++++.+|+.+.. ..++.++.+
T Consensus 157 ArAL~~------~P~lLLLDEP~s~LD~~~r~-----------~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~v 218 (355)
T 1z47_A 157 ARALAP------RPQVLLFDEPFAAIDTQIRR-----------ELRTFVRQVHDEMGVTSVFVTHDQEEA-LEVADRVLV 218 (355)
T ss_dssp HHHHTT------CCSEEEEESTTCCSSHHHHH-----------HHHHHHHHHHHHHTCEEEEECSCHHHH-HHHCSEEEE
T ss_pred HHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCEEEE
Confidence 999998 99999999997775544432 666777766543 78999999997643 345666666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
+.
T Consensus 219 l~ 220 (355)
T 1z47_A 219 LH 220 (355)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.93 E-value=4.2e-27 Score=242.75 Aligned_cols=202 Identities=13% Similarity=0.137 Sum_probs=154.8
Q ss_pred ceeeecccccccccc--eeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHRKS--VKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~--iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.|.++||+++|+++. +|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+... ......
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i~~~-~~~~~~ 78 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY---FDDRLVASN-GKLIVP 78 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE---ETTEEEEET-TEESSC
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---ECCEECccc-ccccCC
Confidence 478999999999888 999999999 9999999999999999955 57789999 888843211 000112
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+|||||+..++|++ ||+||+.|+....+.++.+..+++.++++.+|+.+.
T Consensus 79 ~~~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~------------------- 133 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNL------TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV------------------- 133 (353)
T ss_dssp GGGSCEEEEETTSCCCTTS------CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGG-------------------
T ss_pred hhhCCEEEEeCCCccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------------------
Confidence 2346799999999999999 999999997432333445556678888888888652
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
.++.+..+|+|++|+++|++
T Consensus 134 ------------------------------------------------------------~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 134 ------------------------------------------------------------LNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp ------------------------------------------------------------TTSCGGGSCHHHHHHHHHHH
T ss_pred ------------------------------------------------------------hcCChhhCCHHHHHHHHHHH
Confidence 23345679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++|+|||..|.+..... ++.++|.+..+ .+.++++.+|+.+.. ..++.++.++.
T Consensus 154 aL~~------~P~lLLLDEP~s~LD~~~r~-----------~l~~~l~~l~~~~g~tvi~vTHd~~~~-~~~adri~vl~ 215 (353)
T 1oxx_K 154 ALVK------DPSLLLLDEPFSNLDARMRD-----------SARALVKEVQSRLGVTLLVVSHDPADI-FAIADRVGVLV 215 (353)
T ss_dssp HHTT------CCSEEEEESTTTTSCGGGHH-----------HHHHHHHHHHHHHCCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred HHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 9998 99999999997776554443 66677776654 378999999987643 34666666664
No 17
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.93 E-value=4.5e-27 Score=244.04 Aligned_cols=203 Identities=16% Similarity=0.162 Sum_probs=153.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+............
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY---IGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEE---ECCEECccccccccCCHh
Confidence 478999999999889999999999 9999999999999999955 57789999 888844220000001122
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||+..++|++ ||.||+.|+....+..+.+..+++.++++.+|+.+
T Consensus 80 ~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 131 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHM------TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE---------------------- 131 (372)
T ss_dssp GSSEEEECSCCCCCTTS------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG----------------------
T ss_pred HCCEEEEeCCCccCCCC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch----------------------
Confidence 45799999999999999 99999999732223334455667788888888764
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|+++|++++
T Consensus 132 ---------------------------------------------------------~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 132 ---------------------------------------------------------LLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp ---------------------------------------------------------GTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhcCCcccCCHHHHHHHHHHHHH
Confidence 22345567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||..+.+.... .++.++|.+..+ .+.++++.+|+.+.. ..++.++.++.
T Consensus 155 ~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~vl~ 214 (372)
T 1g29_1 155 VR------KPQVFLMDEPLSNLDAKLR-----------VRMRAELKKLQRQLGVTTIYVTHDQVEA-MTMGDRIAVMN 214 (372)
T ss_dssp HT------CCSEEEEECTTTTSCHHHH-----------HHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred hc------CCCEEEECCCCccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEECCCHHHH-HHhCCEEEEEe
Confidence 98 9999999999777554433 266666766654 378999999987643 34666666663
No 18
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=2.4e-27 Score=236.64 Aligned_cols=202 Identities=16% Similarity=0.152 Sum_probs=153.2
Q ss_pred Cceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|+++||+++|++ ..+|++|||+| ||+|||||||||||++|+| .+.+|+|+ ++|+.+. .......
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~---~~G~~i~--~~~~~~~ 80 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL---FDNKPID--YSRKGIM 80 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEECC--CSHHHHH
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE---ECCEECC--cccccHH
Confidence 46899999999975 45999999999 9999999999999999954 57889999 8888331 0111122
Q ss_pred cccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||+|++ ..+..+ ||.||+.|+....+.+..+..+++.++++.+|+.+
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------------------- 135 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSA------SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH------------------- 135 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSS------BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-------------------
T ss_pred HHhCcEEEEEcCcccccccC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------------------
Confidence 3456799999986 334467 99999998743334455566677888888888754
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|+++|+
T Consensus 136 ------------------------------------------------------------~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 136 ------------------------------------------------------------LKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp ------------------------------------------------------------GTTSBGGGSCHHHHHHHHHH
T ss_pred ------------------------------------------------------------hhcCCcccCCHHHHHHHHHH
Confidence 12234556899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||+.|.+..... .+.++|.+.. +.+.++++.+|+++... .++.++.++
T Consensus 156 raL~~------~P~lLlLDEPts~LD~~~~~-----------~i~~~l~~l~~~~g~tvi~vtHdl~~~~-~~~drv~~l 217 (275)
T 3gfo_A 156 GVLVM------EPKVLILDEPTAGLDPMGVS-----------EIMKLLVEMQKELGITIIIATHDIDIVP-LYCDNVFVM 217 (275)
T ss_dssp HHHTT------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHHHCCEEEEEESCCSSGG-GGCSEEEEE
T ss_pred HHHHc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHHhhCCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99998 99999999998887655543 6666777665 44889999999987554 366677666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 218 ~ 218 (275)
T 3gfo_A 218 K 218 (275)
T ss_dssp E
T ss_pred E
Confidence 4
No 19
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.93 E-value=3.8e-27 Score=243.31 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=152.8
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|.++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---i~g~~i----~~~~--~~ 73 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY---FDEKDV----TELP--PK 73 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--GG
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEE---ECCEEC----CcCC--Hh
Confidence 488999999999889999999999 9999999999999999955 57789999 888833 2222 22
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||||+..++|++ ||.||+.|+....+.++.+..+++.++++.+|+.+
T Consensus 74 ~r~ig~v~Q~~~l~~~l------tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---------------------- 125 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHM------TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK---------------------- 125 (362)
T ss_dssp GTTEEEECTTCCCCTTS------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT----------------------
T ss_pred HCcEEEEecCcccCCCC------CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch----------------------
Confidence 35799999999999999 99999999732222334455667888888888765
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
+.++.+..+|+|++|+++|++++
T Consensus 126 ---------------------------------------------------------~~~r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 126 ---------------------------------------------------------LLNRYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ---------------------------------------------------------CTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhhCChhhCCHHHHHHHHHHHHH
Confidence 22344567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +|+++|+|||..|.+.... .++.++|.+..+. +.++++.+|+.+.. ..++.++.++.
T Consensus 149 ~~------~P~lLLLDEP~s~LD~~~r-----------~~l~~~l~~l~~~~g~tvi~vTHd~~~a-~~~adri~vl~ 208 (362)
T 2it1_A 149 VK------EPEVLLLDEPLSNLDALLR-----------LEVRAELKRLQKELGITTVYVTHDQAEA-LAMADRIAVIR 208 (362)
T ss_dssp TT------CCSEEEEESGGGGSCHHHH-----------HHHHHHHHHHHHHHTCEEEEEESCHHHH-HHHCSEEEEEE
T ss_pred Hc------CCCEEEEECccccCCHHHH-----------HHHHHHHHHHHHhCCCEEEEECCCHHHH-HHhCCEEEEEE
Confidence 98 9999999999776554433 2666677666543 78999999987643 34666766664
No 20
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.92 E-value=4.5e-27 Score=233.52 Aligned_cols=204 Identities=16% Similarity=0.144 Sum_probs=151.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCcccee---------c
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVI---------E 141 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~---------~ 141 (541)
.|.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|..+.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~---~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII---VNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEEccccccccccccc
Confidence 589999999999889999999999 9999999999999999955 56789999 88873310 0
Q ss_pred ccccccccccccEEEEeCCCccccccccccCCCcccceecccc-ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 142 VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATL-PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 142 ~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~-~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
.........++.+|||+|+..+++.+ ||.||+.++.. ..+....+..+++.++++.+|+.+.
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~l------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------- 145 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHM------TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER----------- 145 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTS------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH-----------
T ss_pred cChhhHHHHhcceEEEecCcccCCCC------cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------
Confidence 01011112345799999999999999 99999988521 1122333445567777888877541
Q ss_pred ccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCC
Q psy91 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300 (541)
Q Consensus 221 l~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~ 300 (541)
..++.+..+|+|+
T Consensus 146 -------------------------------------------------------------------~~~~~~~~LSgGq 158 (262)
T 1b0u_A 146 -------------------------------------------------------------------AQGKYPVHLSGGQ 158 (262)
T ss_dssp -------------------------------------------------------------------HHTSCGGGSCHHH
T ss_pred -------------------------------------------------------------------hhcCCcccCCHHH
Confidence 0123355689999
Q ss_pred CcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccc
Q psy91 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380 (541)
Q Consensus 301 ~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~ 380 (541)
+|++.|+++++. +|+++|+|||..|.+..+.. .+.++|.+..+.+.++++.+|+++... .++
T Consensus 159 ~qRv~lAraL~~------~p~lllLDEPts~LD~~~~~-----------~~~~~l~~l~~~g~tvi~vtHd~~~~~-~~~ 220 (262)
T 1b0u_A 159 QQRVSIARALAM------EPDVLLFDEPTSALDPELVG-----------EVLRIMQQLAEEGKTMVVVTHEMGFAR-HVS 220 (262)
T ss_dssp HHHHHHHHHHHT------CCSEEEEESTTTTSCHHHHH-----------HHHHHHHHHHHTTCCEEEECSCHHHHH-HHC
T ss_pred HHHHHHHHHHhc------CCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhC
Confidence 999999999998 99999999998886655543 666677666555889999999977543 355
Q ss_pred ceeEEEc
Q psy91 381 LRLTVVD 387 (541)
Q Consensus 381 ~rvnvIp 387 (541)
.++.++.
T Consensus 221 d~v~~l~ 227 (262)
T 1b0u_A 221 SHVIFLH 227 (262)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 6666653
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=6.7e-27 Score=231.23 Aligned_cols=200 Identities=16% Similarity=0.196 Sum_probs=151.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.|+++||+++|+++.+|++|||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ... ..
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~~----~~~-~~ 84 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT---VFGKNV----VEE-PH 84 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEET----TTC-HH
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---ECCEEC----Ccc-HH
Confidence 46799999999999889999999999 9999999999999999955 57789999 888732 211 12
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+|||+|+..+++.+ ||+||+.++....+....+..+++.++++.+|+.+..
T Consensus 85 ~~~~~i~~v~q~~~l~~~l------tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------------------ 140 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNM------QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI------------------ 140 (256)
T ss_dssp HHHTTEEEECTTCCCCTTS------BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG------------------
T ss_pred HHhhcEEEEcCCCCCCCCC------cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh------------------
Confidence 2345799999999999999 9999998862111222333345677788888875421
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++.+..+|+|++|++.|++
T Consensus 141 -------------------------------------------------------------~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 141 -------------------------------------------------------------KDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp -------------------------------------------------------------GSBGGGCCHHHHHHHHHHH
T ss_pred -------------------------------------------------------------cCChhhCCHHHHHHHHHHH
Confidence 1224468999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++|+|||..|.+..+.. .+.++|.+..+.++++++.+|+++... .++.++.++.
T Consensus 160 aL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tiiivtHd~~~~~-~~~d~v~~l~ 220 (256)
T 1vpl_A 160 ALMV------NPRLAILDEPTSGLDVLNAR-----------EVRKILKQASQEGLTILVSSHNMLEVE-FLCDRIALIH 220 (256)
T ss_dssp HHTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEEECCHHHHT-TTCSEEEEEE
T ss_pred HHHc------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHHhCCCEEEEEcCCHHHHH-HHCCEEEEEE
Confidence 9998 99999999998887655543 566667666555889999999877543 4566666653
No 22
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=8.5e-27 Score=230.96 Aligned_cols=200 Identities=17% Similarity=0.119 Sum_probs=150.3
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc-cc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK-VR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~-~~ 148 (541)
+.|.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|+.+ .... ..
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~ 78 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY---FENKDI----TNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEC----TTCCHHH
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCEEC----CCCCHHH
Confidence 3589999999999989999999999 9999999999999999955 56789999 888732 2111 11
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccc--cc-----------hhhHhHhhhHHHHHHHhCCCCccchhhh
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP--EQ-----------VHRKSVKKGFDFTLMVVGESGLGKSTLV 215 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~--~~-----------~~~~e~~~~v~~~L~~vGL~g~~ks~l~ 215 (541)
..++.+|||+|+..+++.+ ||.||+.++... .+ ....+..+++.++++.+|+.+
T Consensus 79 ~~~~~i~~v~q~~~l~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------- 145 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEM------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH------- 145 (257)
T ss_dssp HHHHTEEECCCCCGGGGGS------BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-------
T ss_pred HHhCCEEEEccCCccCCCC------cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-------
Confidence 2245699999999999999 999999987322 11 112233445666677666643
Q ss_pred hhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCC
Q psy91 216 NSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 295 (541)
Q Consensus 216 ~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ 295 (541)
+.++.+..
T Consensus 146 ------------------------------------------------------------------------~~~~~~~~ 153 (257)
T 1g6h_A 146 ------------------------------------------------------------------------LYDRKAGE 153 (257)
T ss_dssp ------------------------------------------------------------------------GTTSBGGG
T ss_pred ------------------------------------------------------------------------hhCCCchh
Confidence 22334567
Q ss_pred CCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+|+|++|++.|+++++. +|+++|+|||..|.+..+.. .+.++|.+..+.+.++++.+|+++..
T Consensus 154 LSgGqkQrv~iAraL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMT------NPKMIVMDEPIAGVAPGLAH-----------DIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp SCHHHHHHHHHHHHHHT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred CCHHHHHHHHHHHHHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 89999999999999998 99999999998887655543 66667766655588999999998754
Q ss_pred hhcccceeEEEc
Q psy91 376 ERGVKLRLTVVD 387 (541)
Q Consensus 376 ~~~l~~rvnvIp 387 (541)
. .++.++.++.
T Consensus 217 ~-~~~d~v~~l~ 227 (257)
T 1g6h_A 217 L-NYIDHLYVMF 227 (257)
T ss_dssp G-GGCSEEEEEE
T ss_pred H-HhCCEEEEEE
Confidence 3 4666766664
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2.2e-26 Score=225.73 Aligned_cols=199 Identities=14% Similarity=0.172 Sum_probs=146.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc-
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR- 148 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~- 148 (541)
+.+.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ ......
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII---FNGQDI----TNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEC----TTCCHHH
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE---ECCEEC----CCCCHHH
Confidence 3589999999999889999999999 9999999999999999955 57789999 888732 211111
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhC-CCCccchhhhhhhccccccCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVG-ESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vG-L~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..++.+|||+|+..+++.+ ||.||+.++.... .......+.+..+++.+| +.+
T Consensus 78 ~~~~~i~~v~q~~~l~~~l------tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~~~l~~------------------- 131 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPEL------TVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKE------------------- 131 (240)
T ss_dssp HHHTTEEEECSSCCCCTTS------BHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHT-------------------
T ss_pred HHhCCEEEEecCCccCCCC------cHHHHHHHhhhcC-CCHHHHHHHHHHHHHHcccHhh-------------------
Confidence 1234699999999999999 9999999873221 112222334444454442 321
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+.++.+..+|+|++|++.|+
T Consensus 132 ------------------------------------------------------------~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 132 ------------------------------------------------------------RLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp ------------------------------------------------------------TTTSBSSSSCHHHHHHHHHH
T ss_pred ------------------------------------------------------------HhcCChhhCCHHHHHHHHHH
Confidence 22345667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++|+|||..|-+..... .+.++|.+..+.++++++.+|+++... .++.++.++.
T Consensus 152 raL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~~~~~g~tvi~vtHd~~~~~-~~~d~v~~l~ 213 (240)
T 1ji0_A 152 RALMS------RPKLLMMDEPSLGLAPILVS-----------EVFEVIQKINQEGTTILLVEQNALGAL-KVAHYGYVLE 213 (240)
T ss_dssp HHHTT------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHTTCCEEEEESCHHHHH-HHCSEEEEEE
T ss_pred HHHHc------CCCEEEEcCCcccCCHHHHH-----------HHHHHHHHHHHCCCEEEEEecCHHHHH-HhCCEEEEEE
Confidence 99998 99999999998887655543 666677666556889999999976432 3556666653
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=3.9e-26 Score=227.11 Aligned_cols=204 Identities=13% Similarity=0.162 Sum_probs=153.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++++||++.|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|+. +.......
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~----~~~~~~~~ 82 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH---LLGQN----LNSWQPKA 82 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE---ETTEE----TTTSCHHH
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---ECCEE----CCcCCHHH
Confidence 4689999999999999999999999 9999999999999999954 57889999 88883 32222223
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
+++.++||+|+..+++.+ ||.||+.++.... ......+++..+++.+|+.+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~-------------------- 134 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPF------SVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLAL-------------------- 134 (266)
T ss_dssp HHHHEEEECSCCCCCSCC------BHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTT--------------------
T ss_pred HhheEEEEecCCccCCCC------CHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhH--------------------
Confidence 445689999999998888 9999999874322 223344567777887777541
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.++.+..+|+|++|++.|+++
T Consensus 135 -----------------------------------------------------------~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 135 -----------------------------------------------------------AQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp -----------------------------------------------------------TTSBGGGCCHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------hcCCcccCCHHHHHHHHHHHH
Confidence 122345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+.-...+|+++|+|||+.|.+..... ++.++|.+..+. +.++++.+|+++... .++.++.++.
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~-----------~i~~~l~~l~~~~~~tvi~vtHdl~~~~-~~~d~v~vl~ 222 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQ-----------HTLRLLRQLTRQEPLAVCCVLHDLNLAA-LYADRIMLLA 222 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHH-----------HHHHHHHHHHHHSSEEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHH-----------HHHHHHHHHHHcCCCEEEEEEcCHHHHH-HhCCEEEEEE
Confidence 86421122269999999998887655543 677777777655 468999999987543 3566666663
No 25
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.92 E-value=1.9e-26 Score=237.09 Aligned_cols=192 Identities=13% Similarity=0.137 Sum_probs=147.3
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
|.++||+++|+++ +|++|||+| +|+|||||||||||++|+| .+++|+|. ++|+.+ ...+ ..+
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~---~~g~~i----~~~~--~~~ 71 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL---LDGKDV----TDLS--PEK 71 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTSC--HHH
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE---ECCEEC----CCCc--hhh
Confidence 6889999999988 999999999 9999999999999999955 57789999 888732 2211 234
Q ss_pred ccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
+.+|||||+..++|++ ||+||+.|+....+..+. +++.++++.+|+.+
T Consensus 72 r~ig~v~Q~~~l~~~l------tv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~----------------------- 119 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHM------NVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEH----------------------- 119 (348)
T ss_dssp HTCEEECTTCCCCTTS------CHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTT-----------------------
T ss_pred CcEEEEecCcccCCCC------CHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCch-----------------------
Confidence 5799999999999999 999999987211111111 56777787777754
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
+.++.+..+|+|++|+++|+++++
T Consensus 120 --------------------------------------------------------~~~~~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 120 --------------------------------------------------------LLDRNPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp --------------------------------------------------------TTTSCGGGSCHHHHHHHHHHHHTT
T ss_pred --------------------------------------------------------HhcCChhhCCHHHHHHHHHHHHHH
Confidence 223445679999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +|+++++|||..+.+.... .++.++|.+..+ .+.++++.+|+.+.. ..++.++.++.
T Consensus 144 ~------~P~lLLLDEP~s~LD~~~~-----------~~l~~~l~~l~~~~g~tii~vTHd~~~~-~~~adri~vl~ 202 (348)
T 3d31_A 144 T------NPKILLLDEPLSALDPRTQ-----------ENAREMLSVLHKKNKLTVLHITHDQTEA-RIMADRIAVVM 202 (348)
T ss_dssp S------CCSEEEEESSSTTSCHHHH-----------HHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHCSEEEEES
T ss_pred c------CCCEEEEECccccCCHHHH-----------HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEE
Confidence 8 9999999999777554433 266777777654 478999999987643 34666776663
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=7.9e-26 Score=226.33 Aligned_cols=202 Identities=15% Similarity=0.157 Sum_probs=145.7
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.|.++||+++|+++.+|++|||+| ||+|||||||||||++|+| .+++|+|. ++|..+.. .......
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~~~~--~~~~~~~ 94 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN---LFGKMPGK--VGYSAET 94 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTBCCC-----CCHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEE---ECCEEccc--ccCCHHH
Confidence 3689999999999889999999999 9999999999999999955 57789999 88873210 0111122
Q ss_pred ccccEEEEeCCCcc--ccccccccCCCcccceecccccc----chhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccc
Q psy91 150 RQYPWGVVEGSTVL--TPSLIGSLFQTDRDYIGFATLPE----QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 223 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l--~~~lig~~~qtv~e~l~~~~~~~----~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~ 223 (541)
.++.+|||+|+..+ .+.+ ||+||+.++.... .....+..+++..+++.+|+.+
T Consensus 95 ~~~~i~~v~Q~~~~~~~~~l------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--------------- 153 (279)
T 2ihy_A 95 VRQHIGFVSHSLLEKFQEGE------RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA--------------- 153 (279)
T ss_dssp HHTTEEEECHHHHTTSCTTS------BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG---------------
T ss_pred HcCcEEEEEcCcccccCCCC------CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh---------------
Confidence 34579999998654 3457 9999998863221 1112233455666777777643
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~ 303 (541)
+.++.+..+|+|++|+
T Consensus 154 ----------------------------------------------------------------~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 154 ----------------------------------------------------------------KAQQYIGYLSTGEKQR 169 (279)
T ss_dssp ----------------------------------------------------------------GTTSBGGGSCHHHHHH
T ss_pred ----------------------------------------------------------------HhcCChhhCCHHHHHH
Confidence 1123345689999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcce--eeccccchhhhhcccc
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTT--TIEKKSMDIEERGVKL 381 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~--~i~~~~~di~~~~l~~ 381 (541)
+.|+++++. +++++|+|||+.|.+..+.. .+.++|.+..+.++++ ++.+|+++.. ..+..
T Consensus 170 v~lAraL~~------~p~lLlLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tv~~iivtHd~~~~-~~~~d 231 (279)
T 2ihy_A 170 VMIARALMG------QPQVLILDEPAAGLDFIARE-----------SLLSILDSLSDSYPTLAMIYVTHFIEEI-TANFS 231 (279)
T ss_dssp HHHHHHHHT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHHCTTCEEEEEESCGGGC-CTTCC
T ss_pred HHHHHHHhC------CCCEEEEeCCccccCHHHHH-----------HHHHHHHHHHHCCCEEEEEEEecCHHHH-HHhCC
Confidence 999999998 99999999998887655543 5666666665458889 9999987643 34566
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 232 ~v~~l~ 237 (279)
T 2ihy_A 232 KILLLK 237 (279)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 766663
No 27
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=1.4e-25 Score=215.74 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=138.5
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..++++||+++|++ .+|++|||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ . .
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~~----~-----~ 75 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII---YNGVPI----T-----K 75 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEG----G-----G
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE---ECCEEh----h-----h
Confidence 36899999999998 9999999999 9999999999999999955 57789999 888732 2 1
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++.++||+|+..+++.+ ||.||+.++...... ... .+++..+++.+|+..
T Consensus 76 ~~~~i~~v~q~~~~~~~~------tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~--------------------- 126 (214)
T 1sgw_A 76 VKGKIFFLPEEIIVPRKI------SVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLD--------------------- 126 (214)
T ss_dssp GGGGEEEECSSCCCCTTS------BHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCC---------------------
T ss_pred hcCcEEEEeCCCcCCCCC------CHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCc---------------------
Confidence 345799999999999999 999999886211111 111 344556666666543
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+ ++.+..+|+|++|++.|+++
T Consensus 127 ----------------------------------------------------------~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 127 ----------------------------------------------------------L-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp ----------------------------------------------------------T-TSBGGGSCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------C-CCChhhCCHHHHHHHHHHHH
Confidence 1 23345689999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
++. +++++|+|||..|.+..... .+.++|.+..+.++++++.+|+++..
T Consensus 148 L~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~~~~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 148 LLV------NAEIYVLDDPVVAIDEDSKH-----------KVLKSILEILKEKGIVIISSREELSY 196 (214)
T ss_dssp TTS------CCSEEEEESTTTTSCTTTHH-----------HHHHHHHHHHHHHSEEEEEESSCCTT
T ss_pred HHh------CCCEEEEECCCcCCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 998 99999999998887665553 56666666654578899999987754
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=4.3e-25 Score=219.85 Aligned_cols=202 Identities=15% Similarity=0.125 Sum_probs=145.9
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.+.++||+++|+++.+|++|||+| +|+|||||||||||++|+|. +.+|+|. ++|..+ .....
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~---~~g~~i----~~~~~ 91 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE---FKGKDL----LALSP 91 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEE---ETTEEG----GGSCH
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEE---ECCEEC----CcCCH
Confidence 3589999999999889999999999 99999999999999999774 5689999 888732 21111
Q ss_pred cc-ccccEEEEeCCCccccccccccCCCcccceeccccc----cc---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhc
Q psy91 148 RG-RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP----EQ---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219 (541)
Q Consensus 148 ~~-~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~----~~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~ 219 (541)
.. .+..++||+|+..+++.+ ||.+|+.+.... .. ....+..+++.++++.+|+..
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~------tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------- 154 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGV------SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE----------- 154 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTC------BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT-----------
T ss_pred HHHhhCCEEEEccCccccccc------cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh-----------
Confidence 11 134589999999999999 999988764100 00 111222334555566555531
Q ss_pred cccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCC-CCCC
Q psy91 220 LSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP-NVND 298 (541)
Q Consensus 220 gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~-~ls~ 298 (541)
.+.++.+. .+|+
T Consensus 155 -------------------------------------------------------------------~~~~~~~~~~LSg 167 (267)
T 2zu0_C 155 -------------------------------------------------------------------DLLTRSVNVGFSG 167 (267)
T ss_dssp -------------------------------------------------------------------TTTTSBTTTTCCH
T ss_pred -------------------------------------------------------------------hHhcCCcccCCCH
Confidence 02233344 4999
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhc
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERG 378 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~ 378 (541)
|++|++.|+++++. +|+++|+|||+.|.+..+.. .+.++|.+..+.++++++.+|+++....-
T Consensus 168 Gq~QRv~iAraL~~------~p~lLlLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tviivtHd~~~~~~~ 230 (267)
T 2zu0_C 168 GEKKRNDILQMAVL------EPELCILDESDSGLDIDALK-----------VVADGVNSLRDGKRSFIIVTHYQRILDYI 230 (267)
T ss_dssp HHHHHHHHHHHHHH------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHTTCCSSCEEEEECSSGGGGGTS
T ss_pred HHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeeCHHHHHhh
Confidence 99999999999998 99999999998886655543 66777777655688999999998754322
Q ss_pred ccceeEEEc
Q psy91 379 VKLRLTVVD 387 (541)
Q Consensus 379 l~~rvnvIp 387 (541)
...++.++.
T Consensus 231 ~~d~v~~l~ 239 (267)
T 2zu0_C 231 KPDYVHVLY 239 (267)
T ss_dssp CCSEEEEEE
T ss_pred cCCEEEEEE
Confidence 256776663
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=2.7e-25 Score=221.16 Aligned_cols=195 Identities=16% Similarity=0.169 Sum_probs=145.8
Q ss_pred ceeeeccccccc--c---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 79 YIGFATLPEQVH--R---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 79 ~i~~~~l~~~~~--~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.|.++||+++|+ + +.+|++|||+| +|+|||||||||||++|+| .+.+|+|. ++|..+ ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~---~~g~~~----~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL---YDGERK----KGY 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEC----CHH
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE---ECCEEC----chH
Confidence 378999999997 4 57999999999 9999999999999999955 56789999 888732 111
Q ss_pred ccccccccEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCC--Cccchhhhhhhcccc
Q psy91 146 KVRGRQYPWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGES--GLGKSTLVNSLFLSD 222 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~--g~~ks~l~~~l~gl~ 222 (541)
..++.+|||+|++ .+++.+ ||+||+.++.... ....+..+++..+++.+|+. +
T Consensus 75 ---~~~~~i~~v~q~~~~~~~~~------tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~-------------- 130 (266)
T 2yz2_A 75 ---EIRRNIGIAFQYPEDQFFAE------RVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDS-------------- 130 (266)
T ss_dssp ---HHGGGEEEECSSGGGGCCCS------SHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHH--------------
T ss_pred ---HhhhhEEEEeccchhhcCCC------cHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcc--------------
Confidence 2345799999995 566778 9999999863211 22223344566777777765 3
Q ss_pred ccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCc
Q psy91 223 LYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGK 302 (541)
Q Consensus 223 ~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q 302 (541)
+.++.+..+|+|++|
T Consensus 131 -----------------------------------------------------------------~~~~~~~~LSgGq~q 145 (266)
T 2yz2_A 131 -----------------------------------------------------------------FKDRVPFFLSGGEKR 145 (266)
T ss_dssp -----------------------------------------------------------------HTTCCGGGSCHHHHH
T ss_pred -----------------------------------------------------------------cccCChhhCCHHHHH
Confidence 112334568999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccce
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~r 382 (541)
++.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+.++++++.+|+++... .++.+
T Consensus 146 Rv~lAraL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tii~vtHd~~~~~-~~~d~ 207 (266)
T 2yz2_A 146 RVAIASVIVH------EPDILILDEPLVGLDREGKT-----------DLLRIVEKWKTLGKTVILISHDIETVI-NHVDR 207 (266)
T ss_dssp HHHHHHHHTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCCTTTG-GGCSE
T ss_pred HHHHHHHHHc------CCCEEEEcCccccCCHHHHH-----------HHHHHHHHHHHcCCEEEEEeCCHHHHH-HhCCE
Confidence 9999999998 99999999998887665543 666777766555889999999977543 35566
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 208 v~~l~ 212 (266)
T 2yz2_A 208 VVVLE 212 (266)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.90 E-value=5.6e-25 Score=216.52 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=145.1
Q ss_pred ceeeecccccc--cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQV--HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~--~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
-|.++||+++| +++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ ......
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~---i~g~~~----~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL---IDGHDL----ALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEET----TTSCHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEEh----hhCCHH
Confidence 47899999999 4678999999999 9999999999999999955 57789999 888732 221122
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.+++.+|||+|++.+++ . ||+||+.++. . .. ..+.+..+++.+|+....+... .|+.
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~------tv~enl~~~~-~-~~----~~~~~~~~l~~~~l~~~~~~~~----~gl~------ 136 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-R------SIIDNISLAN-P-GM----SVEKVIYAAKLAGAHDFISELR----EGYN------ 136 (247)
T ss_dssp HHHHHEEEECSSCCCTT-S------BHHHHHTTTC-T-TC----CHHHHHHHHHHHTCHHHHHTST----TGGG------
T ss_pred HHHhcEEEEeCCCcccc-c------cHHHHHhccC-C-CC----CHHHHHHHHHHhChHHHHHhCc----chhh------
Confidence 33457999999988874 7 9999998862 1 11 1234556677777654211100 0110
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
. .....+..+|+|++|++.|++
T Consensus 137 ---------------------------------------------------------~-~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 137 ---------------------------------------------------------T-IVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp ---------------------------------------------------------C-BCSTTTTCCCHHHHHHHHHHH
T ss_pred ---------------------------------------------------------h-hhhCCCCCCCHHHHHHHHHHH
Confidence 0 123346679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..+.. .+.++|.+.. .++++++.+|+++... ...++.++.
T Consensus 159 aL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~-~g~tviivtH~~~~~~--~~d~v~~l~ 217 (247)
T 2ff7_A 159 ALVN------NPKILIFDEATSALDYESEH-----------VIMRNMHKIC-KGRTVIIIAHRLSTVK--NADRIIVME 217 (247)
T ss_dssp HHTT------CCSEEEECCCCSCCCHHHHH-----------HHHHHHHHHH-TTSEEEEECSSGGGGT--TSSEEEEEE
T ss_pred HHhc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEeCCHHHHH--hCCEEEEEE
Confidence 9998 99999999998886655543 5666666663 4789999999987553 366776664
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=2.3e-25 Score=219.71 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=142.1
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC----CCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS----DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~----~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.+.++||+++|+++.+|++|||+| ||+|||||||||||++|+|. +.+|+|. ++|..+ ......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~---~~g~~~----~~~~~~ 75 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL---LDGENI----LELSPD 75 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEE---ETTEEC----TTSCHH
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE---ECCEEC----CCCCHH
Confidence 478999999999889999999999 99999999999999999763 5789999 888732 211111
Q ss_pred -cccccEEEEeCCCccccccccccCCCcccceeccccc-cc--hhhHhHhhhHHHHHHHhCCC-Cccchhhhhhhccccc
Q psy91 149 -GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLP-EQ--VHRKSVKKGFDFTLMVVGES-GLGKSTLVNSLFLSDL 223 (541)
Q Consensus 149 -~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~-~~--~~~~e~~~~v~~~L~~vGL~-g~~ks~l~~~l~gl~~ 223 (541)
..+..++||+|++.+++.+ ||.+|+.++... .. ....+..+++.++++.+|+. +
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~--------------- 134 (250)
T 2d2e_A 76 ERARKGLFLAFQYPVEVPGV------TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES--------------- 134 (250)
T ss_dssp HHHHTTBCCCCCCCC-CCSC------BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGG---------------
T ss_pred HHHhCcEEEeccCCccccCC------CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChh---------------
Confidence 1234589999999999999 999999875211 01 11122334566667776663 2
Q ss_pred cCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCC-CCCCCCc
Q psy91 224 YGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN-VNDRQGK 302 (541)
Q Consensus 224 ~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~-ls~g~~q 302 (541)
+.++.+.. +|+|++|
T Consensus 135 ----------------------------------------------------------------~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 135 ----------------------------------------------------------------YLSRYLNEGFSGGEKK 150 (250)
T ss_dssp ----------------------------------------------------------------GGGSBTTCC----HHH
T ss_pred ----------------------------------------------------------------HhcCCcccCCCHHHHH
Confidence 11233455 8999999
Q ss_pred ceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcc-cc
Q psy91 303 TTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGV-KL 381 (541)
Q Consensus 303 ~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l-~~ 381 (541)
++.|+++++. +|+++|+|||+.|.+..+.. .+.++|.+..+.++++++.+|+++... .+ ..
T Consensus 151 rv~iAraL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~~~d 212 (250)
T 2d2e_A 151 RNEILQLLVL------EPTYAVLDETDSGLDIDALK-----------VVARGVNAMRGPNFGALVITHYQRILN-YIQPD 212 (250)
T ss_dssp HHHHHHHHHH------CCSEEEEECGGGTTCHHHHH-----------HHHHHHHHHCSTTCEEEEECSSSGGGG-TSCCS
T ss_pred HHHHHHHHHc------CCCEEEEeCCCcCCCHHHHH-----------HHHHHHHHHHhcCCEEEEEecCHHHHH-HhcCC
Confidence 9999999998 99999999998876655443 666777766556889999999987543 34 36
Q ss_pred eeEEEc
Q psy91 382 RLTVVD 387 (541)
Q Consensus 382 rvnvIp 387 (541)
++.++.
T Consensus 213 ~v~~l~ 218 (250)
T 2d2e_A 213 KVHVMM 218 (250)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 676664
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.90 E-value=2.8e-25 Score=217.60 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=144.1
Q ss_pred eeeecccccccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
++++||+++|++ +|++|||+| ||+|||||||||||++|+| .|.+|+|. ++|..+ ... ...++
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~~----~~~--~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR---LNGADI----TPL--PPERR 70 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE---ETTEEC----TTS--CTTTS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEE---ECCEEC----CcC--chhhC
Confidence 678999999975 599999997 9999999999999999955 57789999 888732 211 12345
Q ss_pred cEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCCC
Q psy91 153 PWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232 (541)
Q Consensus 153 ~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~ 232 (541)
.+|||+|+..+++.+ ||+||+.++....+.. ...+++.++++.+|+.+
T Consensus 71 ~i~~v~q~~~l~~~l------tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~------------------------ 118 (240)
T 2onk_A 71 GIGFVPQDYALFPHL------SVYRNIAYGLRNVERV--ERDRRVREMAEKLGIAH------------------------ 118 (240)
T ss_dssp CCBCCCSSCCCCTTS------CHHHHHHTTCTTSCHH--HHHHHHHHHHHTTTCTT------------------------
T ss_pred cEEEEcCCCccCCCC------cHHHHHHHHHHHcCCc--hHHHHHHHHHHHcCCHH------------------------
Confidence 799999999999999 9999999873221211 12445666777776643
Q ss_pred CCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEE
Q psy91 233 NEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMD 312 (541)
Q Consensus 233 ~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~ 312 (541)
+.++.+..+|+|++|++.|+++++.
T Consensus 119 -------------------------------------------------------~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 119 -------------------------------------------------------LLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp -------------------------------------------------------TTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred -------------------------------------------------------HhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1233455689999999999999998
Q ss_pred eeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 313 IEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 313 i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+|+++|+|||..|-+..+.. .+.+++.+..+ .+.++++.+|+++... .++.++.++.
T Consensus 144 ------~p~lllLDEPts~LD~~~~~-----------~~~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~d~i~~l~ 201 (240)
T 2onk_A 144 ------QPRLLLLDEPLSAVDLKTKG-----------VLMEELRFVQREFDVPILHVTHDLIEAA-MLADEVAVML 201 (240)
T ss_dssp ------CCSSBEEESTTSSCCHHHHH-----------HHHHHHHHHHHHHTCCEEEEESCHHHHH-HHCSEEEEEE
T ss_pred ------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEeCCHHHHH-HhCCEEEEEE
Confidence 99999999998886655443 66667766654 3789999999876433 3556666653
No 33
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.90 E-value=8.8e-25 Score=217.97 Aligned_cols=203 Identities=14% Similarity=0.179 Sum_probs=142.3
Q ss_pred CCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|.++||++.|++ +.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|..+ ...
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~---~~g~~i----~~~ 86 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL---LDGEPL----VQY 86 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE---ETTEEG----GGB
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE---ECCEEc----ccC
Confidence 346899999999986 78999999999 9999999999999999955 57789999 888733 221
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
....+++.+|||+|+..+++ . ||+||+.++.... ... ..+...+...++.
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~-~------tv~enl~~~~~~~--~~~---~~~~~~~~~~~~~------------------ 136 (271)
T 2ixe_A 87 DHHYLHTQVAAVGQEPLLFG-R------SFRENIAYGLTRT--PTM---EEITAVAMESGAH------------------ 136 (271)
T ss_dssp CHHHHHHHEEEECSSCCCCS-S------BHHHHHHTTCSSC--CCH---HHHHHHHHHHTCH------------------
T ss_pred CHHHHhccEEEEecCCcccc-c------cHHHHHhhhcccC--ChH---HHHHHHHHHHhHH------------------
Confidence 12233457999999988775 7 9999999863111 110 1111112222211
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhh--cccccCCCCCCCCCCCCCCcc
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNDRQGKT 303 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L--~~~~~~~~~~~~~ls~g~~q~ 303 (541)
.+++.+ .... ..++.+..+|+|++|+
T Consensus 137 ---------------------------------------------------~~l~~l~~gl~~-~~~~~~~~LSgGq~QR 164 (271)
T 2ixe_A 137 ---------------------------------------------------DFISGFPQGYDT-EVGETGNQLSGGQRQA 164 (271)
T ss_dssp ---------------------------------------------------HHHHHSTTGGGS-BCCGGGTTSCHHHHHH
T ss_pred ---------------------------------------------------HHHHhhhcchhh-hhcCCcCCCCHHHHHH
Confidence 112222 1111 2334566799999999
Q ss_pred eEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccce
Q psy91 304 TTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLR 382 (541)
Q Consensus 304 v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~r 382 (541)
+.|+++++. +++++|+|||..|.+..+.. .+.++|.+..+ .++++++.+|+++... ...+
T Consensus 165 v~lAraL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~~~~g~tviivtHd~~~~~--~~d~ 225 (271)
T 2ixe_A 165 VALARALIR------KPRLLILDNATSALDAGNQL-----------RVQRLLYESPEWASRTVLLITQQLSLAE--RAHH 225 (271)
T ss_dssp HHHHHHHTT------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHCTTTTTSEEEEECSCHHHHT--TCSE
T ss_pred HHHHHHHhc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHHhhcCCEEEEEeCCHHHHH--hCCE
Confidence 999999998 99999999998886655543 66677766643 4789999999987654 2667
Q ss_pred eEEEc
Q psy91 383 LTVVD 387 (541)
Q Consensus 383 vnvIp 387 (541)
+.++.
T Consensus 226 v~~l~ 230 (271)
T 2ixe_A 226 ILFLK 230 (271)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77664
No 34
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.90 E-value=2e-24 Score=212.12 Aligned_cols=201 Identities=12% Similarity=0.134 Sum_probs=146.0
Q ss_pred eeeecccccc-cccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 80 IGFATLPEQV-HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 80 i~~~~l~~~~-~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
|.++||+++| +++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|.. +.......+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g~~----~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT---IDGQP----IDNISLENW 74 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE---ETTEE----STTTSCSCC
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE---ECCEE----hhhCCHHHH
Confidence 6889999999 6678999999999 9999999999999999955 57789999 88873 222222334
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.++||+|++.+++ . ||+||+.++..+ .. ..+.+..+++.+|+.+..+.... |+.
T Consensus 75 ~~~i~~v~q~~~l~~-~------tv~enl~~~~~~-~~----~~~~~~~~l~~~~l~~~~~~~~~----gl~-------- 130 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-G------TIRENLTYGLEG-DY----TDEDLWQVLDLAFARSFVENMPD----QLN-------- 130 (243)
T ss_dssp TTTCCEECCSSCCCC-E------EHHHHTTSCTTS-CS----CHHHHHHHHHHHTCTTTTTSSTT----GGG--------
T ss_pred HhhEEEEcCCCcccc-c------cHHHHHhhhccC-CC----CHHHHHHHHHHhChHHHHHhCcc----chh--------
Confidence 567999999988775 7 999999986211 11 12345667788887653221100 000
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
. ..+..+..+|+|++|++.|++++
T Consensus 131 -------------------------------------------------------~-~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 131 -------------------------------------------------------T-EVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp -------------------------------------------------------C-EESTTSBCCCHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------c-hhccCcCcCCHHHHHHHHHHHHH
Confidence 0 11234567999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||..|-+..+.. .+.++|.+.. .++++++.+|+++... ...++.++.
T Consensus 155 ~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~-~~~tvi~vtH~~~~~~--~~d~v~~l~ 211 (243)
T 1mv5_A 155 LR------NPKILMLDEATASLDSESES-----------MVQKALDSLM-KGRTTLVIAHRLSTIV--DADKIYFIE 211 (243)
T ss_dssp HH------CCSEEEEECCSCSSCSSSCC-----------HHHHHHHHHH-TTSEEEEECCSHHHHH--HCSEEEEEE
T ss_pred hc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHhc-CCCEEEEEeCChHHHH--hCCEEEEEE
Confidence 98 99999999997776655553 5666666654 4789999999987543 366777764
No 35
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.89 E-value=1.5e-24 Score=214.18 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=140.9
Q ss_pred ceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceeccccccccccc
Q psy91 79 YIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQ 151 (541)
Q Consensus 79 ~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~ 151 (541)
.+.++||++.|+ ++.+|+++||+| +|+|||||||||||++|+|...+ ..|++. .+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-------~~G~I~-----------~~ 65 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-------IQGKIE-----------VY 65 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-------SEEEEE-----------EC
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-------CCcEEE-----------Ee
Confidence 589999999998 888999999999 99999999999999999765433 234411 13
Q ss_pred ccEEEEeCCCccccccccccCCCcccceecccccc-c---hhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 152 YPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE-Q---VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 152 ~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~-~---~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
+.+|||+|+..+++.+ ||.||+.++.... + .......+++..+++.+|+.+.
T Consensus 66 ~~i~~v~q~~~~~~~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------------ 121 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAY------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL------------------ 121 (253)
T ss_dssp SCEEEECSCCCCSSCC------BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGG------------------
T ss_pred ccEEEEcCCCccCCCC------CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHH------------------
Confidence 4699999999999889 9999999873221 1 1122334556777777776541
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.++.+..+|+|++|++.|+
T Consensus 122 -------------------------------------------------------------~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 122 -------------------------------------------------------------AKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp -------------------------------------------------------------TTSBGGGSCHHHHHHHHHH
T ss_pred -------------------------------------------------------------hcCChhhCCHHHHHHHHHH
Confidence 1223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhccc-CcceeeccccchhhhhcccceeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQ-GKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~-~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
++++. +|+++|+|||..|.+..+.. .+.++|.+..+. +.++++.+|+++... ++..++.++
T Consensus 141 raL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~~g~tvi~vtHd~~~~~-~~~d~v~~l 202 (253)
T 2nq2_C 141 RAIAS------ECKLILLDEPTSALDLANQD-----------IVLSLLIDLAQSQNMTVVFTTHQPNQVV-AIANKTLLL 202 (253)
T ss_dssp HHHHT------TCSEEEESSSSTTSCHHHHH-----------HHHHHHHHHHHTSCCEEEEEESCHHHHH-HHCSEEEEE
T ss_pred HHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhcCCEEEEEecCHHHHH-HhCCEEEEE
Confidence 99998 99999999998886655543 666677666555 789999999877543 356666666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 203 ~ 203 (253)
T 2nq2_C 203 N 203 (253)
T ss_dssp E
T ss_pred e
Confidence 4
No 36
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.89 E-value=9.1e-25 Score=220.87 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=144.6
Q ss_pred CCceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.|.++||+++|+ ++.+|++|||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +.....
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~---i~G~~----i~~~~~ 123 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR---IDGQD----ISQVTQ 123 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE---ETTEE----TTSBCH
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE---ECCEE----cccCCH
Confidence 35699999999995 577999999999 9999999999999999944 67889999 88883 333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
..+++.+|||+|++.+| .. ||+||+.|+..... ...+..++..+++...... .-.|+..
T Consensus 124 ~~~r~~i~~v~Q~~~lf-~~------Tv~eNi~~~~~~~~------~~~~~~~~~~~~l~~~i~~----lp~gl~t---- 182 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLF-ND------TIADNIRYGRVTAG------NDEVEAAAQAAGIHDAIMA----FPEGYRT---- 182 (306)
T ss_dssp HHHHHTEEEECSSCCCC-SE------EHHHHHHTTSTTCC------HHHHHHHHHHHTCHHHHHH----STTGGGC----
T ss_pred HHHhcceEEEecCCccC-cc------cHHHHHHhhcccCC------HHHHHHHHHHhCcHHHHHh----ccchhhh----
Confidence 34566899999999887 46 99999999842211 1234455666665431110 0001100
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
........+|+|++|+++|+
T Consensus 183 ------------------------------------------------------------~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 183 ------------------------------------------------------------QVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp ------------------------------------------------------------EESTTSBCCCHHHHHHHHHH
T ss_pred ------------------------------------------------------------HhcCCcCCCCHHHHHHHHHH
Confidence 11123456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..... .+.+.|.+.. .++|+++.+|+++.... ..++.++.
T Consensus 203 RAL~~------~p~iLlLDEPts~LD~~~~~-----------~i~~~l~~l~-~~~Tvi~itH~l~~~~~--aD~i~vl~ 262 (306)
T 3nh6_A 203 RTILK------APGIILLDEATSALDTSNER-----------AIQASLAKVC-ANRTTIVVAHRLSTVVN--ADQILVIK 262 (306)
T ss_dssp HHHHH------CCSEEEEECCSSCCCHHHHH-----------HHHHHHHHHH-TTSEEEEECCSHHHHHT--CSEEEEEE
T ss_pred HHHHh------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEEcChHHHHc--CCEEEEEE
Confidence 99998 99999999998876654443 4555555443 36799999999876543 67777764
No 37
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.89 E-value=2.2e-24 Score=212.32 Aligned_cols=189 Identities=11% Similarity=0.097 Sum_probs=142.6
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.++||+++ .+|+++||+| +|+|||||||||||++|+| .+. |+|. ++|..+ .......+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~---~~g~~~----~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQ---FAGQPL----EAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEE---ETTEEG----GGSCHHHH
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEE---ECCEEC----CcCCHHHH
Confidence 5789999887 6999999999 9999999999999999955 467 9999 888732 22112233
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
++.+|||+|+..+++.+ ||+||+.++.... .. .+++..+++.+|+.+.
T Consensus 72 ~~~i~~v~q~~~~~~~~------tv~e~l~~~~~~~-~~----~~~~~~~l~~~~l~~~--------------------- 119 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFAT------PVWHYLTLHQHDK-TR----TELLNDVAGALALDDK--------------------- 119 (249)
T ss_dssp HHHEEEECSCCCCCTTC------BHHHHHHTTCSST-TC----HHHHHHHHHHTTCGGG---------------------
T ss_pred hceEEEECCCCccCCCC------cHHHHHHHhhccC-Cc----HHHHHHHHHHcCChhH---------------------
Confidence 45799999999999889 9999999873221 11 3456677777777541
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.++.+..+|+|++|++.|++++
T Consensus 120 ----------------------------------------------------------~~~~~~~LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 120 ----------------------------------------------------------LGRSTNQLSGGEWQRVRLAAVV 141 (249)
T ss_dssp ----------------------------------------------------------TTSBGGGCCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------hcCChhhCCHHHHHHHHHHHHH
Confidence 1223456899999999999999
Q ss_pred EEeeecCeeee-------EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhccccee
Q psy91 311 MDIEERGVKLR-------LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRL 383 (541)
Q Consensus 311 ~~i~e~gv~~~-------L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rv 383 (541)
+. +++ ++|+|||..|.+..... .+.++|.+..+.++++++.+|+++... .+..++
T Consensus 142 ~~------~p~~~~~~~~lllLDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tviivtHd~~~~~-~~~d~v 203 (249)
T 2qi9_C 142 LQ------ITPQANPAGQLLLLDEPMNSLDVAQQS-----------ALDKILSALSQQGLAIVMSSHDLNHTL-RHAHRA 203 (249)
T ss_dssp HH------HCTTTCTTCCEEEESSTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEE
T ss_pred Hc------CCCcCCCCCeEEEEECCcccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEE
Confidence 98 899 99999998887655543 666777766555889999999977543 355666
Q ss_pred EEEc
Q psy91 384 TVVD 387 (541)
Q Consensus 384 nvIp 387 (541)
.++.
T Consensus 204 ~~l~ 207 (249)
T 2qi9_C 204 WLLK 207 (249)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.87 E-value=2.3e-23 Score=206.47 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=141.5
Q ss_pred Cceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|.++||+++|++ +.+|++|||+| ||+|||||||||||++|+|. +..|+|. ++|..+ .....
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~---i~g~~i----~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK---IGGKNV----NKYNR 88 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEE---ETTEEG----GGBCH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEE---ECCEEh----hhcCH
Confidence 35899999999986 46999999999 99999999999999999553 2379999 888732 22112
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.++||+|++.+++ . ||+||+.++... .. .+.+..+++.+|+....+ .+..
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~------tv~enl~~~~~~--~~----~~~~~~~l~~~~l~~~~~--------~l~~---- 143 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-E------TIKYNILYGKLD--AT----DEEVIKATKSAQLYDFIE--------ALPK---- 143 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-E------EHHHHHHTTCTT--CC----HHHHHHHHHHTTCHHHHH--------TSTT----
T ss_pred HHHhccEEEEcCCCcccc-c------CHHHHHhccCCC--CC----HHHHHHHHHHhCCHHHHH--------hccc----
Confidence 234467999999998874 7 999999886321 11 123445566666532100 0000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
+ +++ ...+.+..+|+|++|++.|+
T Consensus 144 --------------------------------~------------------~~~------~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 144 --------------------------------K------------------WDT------IVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp --------------------------------G------------------GGC------EESSSSBCCCHHHHHHHHHH
T ss_pred --------------------------------c------------------ccc------cccCCcCcCCHHHHHHHHHH
Confidence 0 000 11234567999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||..|.+..... .+.++|.+..+ ++++++.+|+++... ...++.++.
T Consensus 168 raL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~l~~-~~tviivtH~~~~~~--~~d~i~~l~ 227 (260)
T 2ghi_A 168 RCLLK------DPKIVIFDEATSSLDSKTEY-----------LFQKAVEDLRK-NRTLIIIAHRLSTIS--SAESIILLN 227 (260)
T ss_dssp HHHHH------CCSEEEEECCCCTTCHHHHH-----------HHHHHHHHHTT-TSEEEEECSSGGGST--TCSEEEEEE
T ss_pred HHHHc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHhcC-CCEEEEEcCCHHHHH--hCCEEEEEE
Confidence 99998 99999999998886655443 56666666544 789999999987643 366666664
No 39
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.87 E-value=6.7e-24 Score=221.18 Aligned_cols=201 Identities=11% Similarity=0.113 Sum_probs=142.5
Q ss_pred Cceeeecccccc--cccceeecceEEE------EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceecccccccc
Q psy91 78 DYIGFATLPEQV--HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 78 ~~i~~~~l~~~~--~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+.|.++||+++| ++..+|++|||+| +|+|||||||||||++|+|. +.+|+|. ++|++ +...+..
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~---i~G~~----i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQ---IDGVS----WDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEE---ESSCB----TTSSCHH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEE---ECCEE----CCcCChH
Confidence 569999999999 6678999999999 99999999999999999542 3689999 88883 3333333
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
..++.+|||||++.+++ . ||++|+.+... . ..+++.++++.+|+.+..++.... +
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~------tv~enl~~~~~---~----~~~~v~~~l~~~~L~~~~~~~p~~----l------- 145 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-G------TFRKNLDPNAA---H----SDQEIWKVADEVGLRSVIEQFPGK----L------- 145 (390)
T ss_dssp HHHHTEEEESCCCCCCS-E------EHHHHHCTTCC---S----CHHHHHHHHHHTTCHHHHTTSTTG----G-------
T ss_pred HHhCCEEEEcCCcccCc-c------CHHHHhhhccc---c----CHHHHHHHHHHhCCHHHHhhcccc----c-------
Confidence 34567999999999986 7 99999975421 1 124566778888876532221110 0
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++ ........+|+|++|+++|++
T Consensus 146 ---------------------------------------------------~~------~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 146 ---------------------------------------------------DF------VLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp ---------------------------------------------------GC------EECTTTTTSCHHHHHHHHHHH
T ss_pred ---------------------------------------------------cc------ccccccccCCHHHHHHHHHHH
Confidence 00 001123458999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +|+++|+|||..+.+.... .++.+.|.+.. .+.++++.+|+.+. ...+.++.++.
T Consensus 169 AL~~------~P~lLLLDEPts~LD~~~~-----------~~l~~~l~~~~-~~~tvi~vtHd~e~--~~~aDri~vl~ 227 (390)
T 3gd7_A 169 SVLS------KAKILLLDEPSAHLDPVTY-----------QIIRRTLKQAF-ADCTVILCEARIEA--MLECDQFLVIE 227 (390)
T ss_dssp HHHT------TCCEEEEESHHHHSCHHHH-----------HHHHHHHHTTT-TTSCEEEECSSSGG--GTTCSEEEEEE
T ss_pred HHhc------CCCEEEEeCCccCCCHHHH-----------HHHHHHHHHHh-CCCEEEEEEcCHHH--HHhCCEEEEEE
Confidence 9998 9999999999665443332 25555555432 36788999998653 33477777764
No 40
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=6.7e-23 Score=203.22 Aligned_cols=186 Identities=12% Similarity=0.131 Sum_probs=137.9
Q ss_pred eeeecccccccc----cceeecceEEE-----EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceeccccccccc
Q psy91 80 IGFATLPEQVHR----KSVKKGFDFTL-----MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 80 i~~~~l~~~~~~----~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.++||+++|++ +.+|+++||+| +|+|||||||||||++|+|. |.+|+|. ++|..+ ... ..
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~---~~g~~~----~~~--~~ 72 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLLPYSGNIF---INGMEV----RKI--RN 72 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSSCCEEEEE---ETTEEG----GGC--SC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCcEEE---ECCEEC----cch--HH
Confidence 688999999987 78999999998 99999999999999999444 7889999 888732 211 22
Q ss_pred ccccEE-EEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCC-CccchhhhhhhccccccCCC
Q psy91 150 RQYPWG-VVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGES-GLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 150 ~~~~~g-~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~-g~~ks~l~~~l~gl~~~~~~ 227 (541)
++.++ ||+|+..+ .+ ||.||+.++.. .. ....+++..+++.+|+. +.
T Consensus 73 -~~~i~~~v~Q~~~l--~~------tv~enl~~~~~---~~-~~~~~~~~~~l~~~gl~~~~------------------ 121 (263)
T 2pjz_A 73 -YIRYSTNLPEAYEI--GV------TVNDIVYLYEE---LK-GLDRDLFLEMLKALKLGEEI------------------ 121 (263)
T ss_dssp -CTTEEECCGGGSCT--TS------BHHHHHHHHHH---HT-CCCHHHHHHHHHHTTCCGGG------------------
T ss_pred -hhheEEEeCCCCcc--CC------cHHHHHHHhhh---hc-chHHHHHHHHHHHcCCChhH------------------
Confidence 45799 99999877 78 99999987521 00 11233456666666664 21
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.++.+..+|+|++|++.|+
T Consensus 122 -------------------------------------------------------------~~~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 122 -------------------------------------------------------------LRRKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp -------------------------------------------------------------GGSBGGGSCHHHHHHHHHH
T ss_pred -------------------------------------------------------------hcCChhhCCHHHHHHHHHH
Confidence 1223456899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccc-eeEEE
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKL-RLTVV 386 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~-rvnvI 386 (541)
++++. +|+++|+|||..|.+..... .+.++|.+..+ ++++.+|+++... .++. ++.++
T Consensus 141 raL~~------~p~lllLDEPts~LD~~~~~-----------~l~~~L~~~~~---tviivtHd~~~~~-~~~d~~i~~l 199 (263)
T 2pjz_A 141 LALAS------QPEIVGLDEPFENVDAARRH-----------VISRYIKEYGK---EGILVTHELDMLN-LYKEYKAYFL 199 (263)
T ss_dssp HHHHT------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHSCS---EEEEEESCGGGGG-GCTTSEEEEE
T ss_pred HHHHh------CCCEEEEECCccccCHHHHH-----------HHHHHHHHhcC---cEEEEEcCHHHHH-HhcCceEEEE
Confidence 99998 99999999998886655443 56666665543 8889999876543 3566 76666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 200 ~ 200 (263)
T 2pjz_A 200 V 200 (263)
T ss_dssp E
T ss_pred E
Confidence 4
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.84 E-value=4.4e-22 Score=193.68 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=129.9
Q ss_pred CCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
...|.++||+++|+ ++.+|++|||+| ||+|||||||||||++|+| .+.+|+|. ++|
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~g----------- 69 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSG----------- 69 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE---ECS-----------
T ss_pred cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE---ECC-----------
Confidence 34689999999995 578999999999 9999999999999999955 46678887 555
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
.++||+|++.+++ . ||+||+.++... .. ..+..+++.+++...
T Consensus 70 ------~i~~v~q~~~~~~-~------tv~enl~~~~~~---~~----~~~~~~~~~~~l~~~----------------- 112 (229)
T 2pze_A 70 ------RISFCSQFSWIMP-G------TIKENIIFGVSY---DE----YRYRSVIKACQLEED----------------- 112 (229)
T ss_dssp ------CEEEECSSCCCCS-B------CHHHHHHTTSCC---CH----HHHHHHHHHTTCHHH-----------------
T ss_pred ------EEEEEecCCcccC-C------CHHHHhhccCCc---Ch----HHHHHHHHHhCcHHH-----------------
Confidence 3799999988765 6 999999986211 11 112223333333210
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcc-cccCCCCCCCCCCCCCCcceE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~-~~~~~~~~~~~ls~g~~q~v~ 305 (541)
++.+.. ...........+|+|++|++.
T Consensus 113 ----------------------------------------------------~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 113 ----------------------------------------------------ISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp ----------------------------------------------------HTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred ----------------------------------------------------HHhCcccccccccCCCCcCCHHHHHHHH
Confidence 000000 000112335679999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh-hhhcccCcceeeccccchhhhhcccceeE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF-NDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l-~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
|+++++. +++++|+|||..|-+..+.. .+.+.+ .+.. .++++++.+|+++... ...++.
T Consensus 141 lAral~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~~-~~~tvi~vtH~~~~~~--~~d~v~ 200 (229)
T 2pze_A 141 LARAVYK------DADLYLLDSPFGYLDVLTEK-----------EIFESCVCKLM-ANKTRILVTSKMEHLK--KADKIL 200 (229)
T ss_dssp HHHHHHS------CCSEEEEESTTTTSCHHHHH-----------HHHHHCCCCCT-TTSEEEEECCCHHHHH--HCSEEE
T ss_pred HHHHHhc------CCCEEEEECcccCCCHHHHH-----------HHHHHHHHHhh-CCCEEEEEcCChHHHH--hCCEEE
Confidence 9999998 99999999998886655443 444442 3332 3678999999987543 366666
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
++.
T Consensus 201 ~l~ 203 (229)
T 2pze_A 201 ILH 203 (229)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.84 E-value=6e-22 Score=218.28 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=146.4
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++||+++|++ +++|+|+||++ ||+||||||||||+++|++ .|++|+|. ++|.++ .....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~---~~g~~~----~~~~~ 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC---LDGHDV----RDYKL 412 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE---ECCEEh----hhCCH
Confidence 46999999999975 67999999999 9999999999999999944 57889999 888733 22222
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+++ . |++||+.++..+. . ..+.+.++++.+|+.+..++.. .|++.
T Consensus 413 ~~~~~~i~~v~Q~~~l~~-~------tv~eni~~~~~~~-~----~~~~~~~~~~~~~l~~~~~~~p----~g~~t---- 472 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFN-D------TIANNIAYAAEGE-Y----TREQIEQAARQAHAMEFIENMP----QGLDT---- 472 (582)
T ss_pred HHHhcCeEEEcCCCcccc-c------cHHHHHhccCCCC-C----CHHHHHHHHHHCCCHHHHHhCc----ccccc----
Confidence 344567999999998874 6 9999999973221 1 1234666777777754211100 00000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
........+|+|++|+++|+
T Consensus 473 ------------------------------------------------------------~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 473 ------------------------------------------------------------VIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred ------------------------------------------------------------hhcCCCCcCCHHHHHHHHHH
Confidence 01123456999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..+.. .+.+.+.+..+ ++|+++.+|+++... ...++.+++
T Consensus 493 ral~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~~~-~~tvi~itH~~~~~~--~~d~i~~l~ 552 (582)
T 3b5x_A 493 RALLR------DAPVLILDEATSALDTESER-----------AIQAALDELQK-NKTVLVIAHRLSTIE--QADEILVVD 552 (582)
T ss_pred HHHHc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHcC-CCEEEEEecCHHHHH--hCCEEEEEE
Confidence 99999 99999999998876655543 55566665544 889999999877543 466776664
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.84 E-value=5.4e-22 Score=218.62 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=145.8
Q ss_pred Cceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 78 DYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 78 ~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
+.|+++|++++|++ +++|+|+||+| ||+||||||||||+++|++ .|.+|+|. ++|.+ +.....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~---~~g~~----~~~~~~ 412 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL---MDGHD----LREYTL 412 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE---ETTEE----TTTBCH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE---ECCEE----ccccCH
Confidence 46999999999974 67999999999 9999999999999999944 57789999 88873 322222
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+++ . |++||+.++..+. . ..+++.++++.+|+.+..++.. .|++.
T Consensus 413 ~~~~~~i~~v~Q~~~l~~-~------tv~eni~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~~p----~g~~~---- 472 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFN-D------TVANNIAYARTEE-Y----SREQIEEAARMAYAMDFINKMD----NGLDT---- 472 (582)
T ss_dssp HHHHHTEEEECSSCCCCS-S------BHHHHHHTTTTSC-C----CHHHHHHHHHTTTCHHHHHHST----TGGGS----
T ss_pred HHHHhhCeEEccCCcCCC-C------CHHHHHhccCCCC-C----CHHHHHHHHHHcCCHHHHHhcc----ccccc----
Confidence 334567999999998875 6 9999999873211 1 1234566676666643211100 01110
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
........+|+|++|+++|+
T Consensus 473 ------------------------------------------------------------~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 473 ------------------------------------------------------------IIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp ------------------------------------------------------------BCCTTSCSSCHHHHHHHHHH
T ss_pred ------------------------------------------------------------cccCCCCCCCHHHHHHHHHH
Confidence 11223457999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..+.. .+.+.+.+..+ ++|+++.+|+++... ...++.+++
T Consensus 493 ral~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~~~-~~tvi~itH~~~~~~--~~d~i~~l~ 552 (582)
T 3b60_A 493 RALLR------DSPILILDEATSALDTESER-----------AIQAALDELQK-NRTSLVIAHRLSTIE--QADEIVVVE 552 (582)
T ss_dssp HHHHH------CCSEEEEETTTSSCCHHHHH-----------HHHHHHHHHHT-TSEEEEECSCGGGTT--TCSEEEEEE
T ss_pred HHHHh------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHhC-CCEEEEEeccHHHHH--hCCEEEEEE
Confidence 99998 99999999998876655543 55556655544 889999999987543 466777764
No 44
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.83 E-value=7.1e-22 Score=193.16 Aligned_cols=188 Identities=16% Similarity=0.131 Sum_probs=128.8
Q ss_pred ceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceecccccccc
Q psy91 79 YIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 79 ~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
.|.++||+++|+ ++.+|+++||+| ||+|||||||||||++|++. +.+|+|. ++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA---IKG------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE---ECS-------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE---ECC-------------
Confidence 478999999998 578999999999 99999999999999999654 5677777 555
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++||+|++.+ +.+ ||+||+.++... .. .....+++.+++.. .+ +..+.
T Consensus 67 ----~i~~v~Q~~~~-~~~------tv~enl~~~~~~---~~----~~~~~~~~~~~l~~--------~~-~~~~~---- 115 (237)
T 2cbz_A 67 ----SVAYVPQQAWI-QND------SLRENILFGCQL---EE----PYYRSVIQACALLP--------DL-EILPS---- 115 (237)
T ss_dssp ----CEEEECSSCCC-CSE------EHHHHHHTTSCC---CT----THHHHHHHHTTCHH--------HH-TTSTT----
T ss_pred ----EEEEEcCCCcC-CCc------CHHHHhhCcccc---CH----HHHHHHHHHHhhHH--------HH-Hhccc----
Confidence 27999999764 578 999999886311 11 11122233222210 00 00000
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
| ... ..++.+..+|+|++|++.|++
T Consensus 116 ---------------------------------------------~---------~~~-~~~~~~~~LSgGqkqRv~lAr 140 (237)
T 2cbz_A 116 ---------------------------------------------G---------DRT-EIGEKGVNLSGGQKQRVSLAR 140 (237)
T ss_dssp ---------------------------------------------G---------GGS-EESTTSBCCCHHHHHHHHHHH
T ss_pred ---------------------------------------------c---------ccc-cccCCCCCCCHHHHHHHHHHH
Confidence 0 000 112346679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh--hcccCcceeeccccchhhhhcccceeEEE
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND--ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~--e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++. +++++|+|||..|-+..+.. .+.+.+.+ ....++++++.+|+++... ...++.++
T Consensus 141 aL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~l~~~~~~~~~~tviivtH~~~~~~--~~d~v~~l 201 (237)
T 2cbz_A 141 AVYS------NADIYLFDDPLSAVDAHVGK-----------HIFENVIGPKGMLKNKTRILVTHSMSYLP--QVDVIIVM 201 (237)
T ss_dssp HHHH------CCSEEEEESTTTTSCHHHHH-----------HHHHHTTSTTSTTTTSEEEEECSCSTTGG--GSSEEEEE
T ss_pred HHhc------CCCEEEEeCcccccCHHHHH-----------HHHHHHHHHHhhcCCCEEEEEecChHHHH--hCCEEEEE
Confidence 9998 99999999998886655443 45555531 1123788999999987643 46677666
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
.
T Consensus 202 ~ 202 (237)
T 2cbz_A 202 S 202 (237)
T ss_dssp E
T ss_pred e
Confidence 4
No 45
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.83 E-value=1e-21 Score=216.92 Aligned_cols=205 Identities=13% Similarity=0.134 Sum_probs=145.2
Q ss_pred Cc-eeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 78 DY-IGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 78 ~~-i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
+. |+++||+++|++ +++|+|+||++ ||+||||||||||+++|++ .|.+|+|. ++|.+ +...
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~---~~g~~----i~~~ 411 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS---LDGHD----IRQL 411 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE---ETTEE----TTTB
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE---ECCEE----hhhC
Confidence 45 999999999975 36999999999 9999999999999999954 57789999 88873 3222
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.....++.+|||+|++.+++ . |++||+.++.... .....+++.++++.+|+.+..+.. -.|++.
T Consensus 412 ~~~~~~~~i~~v~Q~~~l~~-~------tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l----~~g~~~-- 475 (595)
T 2yl4_A 412 NPVWLRSKIGTVSQEPILFS-C------SIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNF----PQGFNT-- 475 (595)
T ss_dssp CHHHHHHSEEEECSSCCCCS-S------BHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTS----SSGGGC--
T ss_pred CHHHHHhceEEEccCCcccC-C------CHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhC----cccccc--
Confidence 22334567999999998874 6 9999999973210 011234566677777775321100 000000
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
........+|+|++|+++
T Consensus 476 --------------------------------------------------------------~~~~~~~~LSgGq~qrv~ 493 (595)
T 2yl4_A 476 --------------------------------------------------------------VVGEKGVLLSGGQKQRIA 493 (595)
T ss_dssp --------------------------------------------------------------BCSSSSCCCCHHHHHHHH
T ss_pred --------------------------------------------------------------cccCCCCcCCHHHHHHHH
Confidence 111234579999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||+.+-+..+.. .+.+.+.+..+ ++|+++.+|+++... ...++.+
T Consensus 494 iAral~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~~~-~~tvi~itH~~~~~~--~~d~i~~ 553 (595)
T 2yl4_A 494 IARALLK------NPKILLLDEATSALDAENEY-----------LVQEALDRLMD-GRTVLVIAHRLSTIK--NANMVAV 553 (595)
T ss_dssp HHHHHHH------CCSEEEEECCCSSCCHHHHH-----------HHHHHHHHHHT-TSEEEEECCCHHHHH--HSSEEEE
T ss_pred HHHHHHc------CCCEEEEECcccCCCHHHHH-----------HHHHHHHHHhc-CCEEEEEecCHHHHH--cCCEEEE
Confidence 9999998 99999999998876655443 55666666544 789999999977543 3566666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 554 l~ 555 (595)
T 2yl4_A 554 LD 555 (595)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 46
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=1.4e-21 Score=215.32 Aligned_cols=202 Identities=19% Similarity=0.184 Sum_probs=142.1
Q ss_pred CCceeeeccccccc--ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVH--RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~--~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.|+++|++++|+ ++++|+|+||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +....
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~---i~g~~----i~~~~ 411 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE---VDELD----VRTVK 411 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE---ESSSB----GGGBC
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE---ECCEE----cccCC
Confidence 35799999999995 467999999999 9999999999999999944 57789999 88883 33333
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....++.++||+|++.++ .. |++||+.++.... . .+.+..+++..++...
T Consensus 412 ~~~~r~~i~~v~Q~~~lf-~~------tv~eni~~~~~~~--~----~~~~~~~~~~~~~~~~----------------- 461 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLF-SG------TIKENLKWGREDA--T----DDEIVEAAKIAQIHDF----------------- 461 (587)
T ss_dssp HHHHHHHEEEECSSCCCC-SE------EHHHHHTTTCSSC--C----HHHHHHHHHHTTCHHH-----------------
T ss_pred HHHHHhheEEECCCCcCc-Cc------cHHHHHhccCCCC--C----HHHHHHHHHHhCcHHH-----------------
Confidence 334566799999999887 35 8999999873211 1 1223334444444221
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhc-ccccCCCCCCCCCCCCCCcceE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF-LSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~-~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+..|- +-+....+....+|+||+|+++
T Consensus 462 ----------------------------------------------------i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 462 ----------------------------------------------------IISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp ----------------------------------------------------HHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred ----------------------------------------------------HHhcccchhhHhcCCCCCcCHHHHHHHH
Confidence 11100 0000112235579999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||+.+-+..+.. .+.+.+.+. ..++|+++.+|+++... ...++.+
T Consensus 490 lARal~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~-~~~~tvi~itH~l~~~~--~~d~i~v 549 (587)
T 3qf4_A 490 IARALVK------KPKVLILDDCTSSVDPITEK-----------RILDGLKRY-TKGCTTFIITQKIPTAL--LADKILV 549 (587)
T ss_dssp HHHHHHT------CCSEEEEESCCTTSCHHHHH-----------HHHHHHHHH-STTCEEEEEESCHHHHT--TSSEEEE
T ss_pred HHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHh-CCCCEEEEEecChHHHH--hCCEEEE
Confidence 9999998 99999999998776554443 455555554 34789999999987543 5677777
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 550 l~ 551 (587)
T 3qf4_A 550 LH 551 (587)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 47
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.82 E-value=1.8e-21 Score=214.25 Aligned_cols=203 Identities=15% Similarity=0.151 Sum_probs=141.9
Q ss_pred CCceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.|+++|++++|++ +++|+|+||+| ||+||||||||||+++|++ .|.+|+|. ++|.+ +....
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~---~~g~~----~~~~~ 409 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL---IDGHN----IKDFL 409 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE---ETTEE----GGGSC
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE---ECCEE----hhhCC
Confidence 356999999999964 57999999999 9999999999999999954 57789999 88883 33333
Q ss_pred cccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCC
Q psy91 147 VRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~ 226 (541)
....++.+|||+|++.+++ . |++||+.++.... ..+.+.++++.+++....+. .-.|++.
T Consensus 410 ~~~~r~~i~~v~Q~~~l~~-~------tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~----lp~g~~t--- 469 (578)
T 4a82_A 410 TGSLRNQIGLVQQDNILFS-D------TVKENILLGRPTA------TDEEVVEAAKMANAHDFIMN----LPQGYDT--- 469 (578)
T ss_dssp HHHHHHTEEEECSSCCCCS-S------BHHHHHGGGCSSC------CHHHHHHHHHHTTCHHHHHT----STTGGGC---
T ss_pred HHHHhhheEEEeCCCccCc-c------cHHHHHhcCCCCC------CHHHHHHHHHHhCcHHHHHh----Ccchhhh---
Confidence 3345567999999988874 4 8999999873111 11234455555555321100 0001100
Q ss_pred CCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEE
Q psy91 227 RKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI 306 (541)
Q Consensus 227 ~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I 306 (541)
........+|+|++|+++|
T Consensus 470 -------------------------------------------------------------~~~~~g~~LSgGq~Qrv~l 488 (578)
T 4a82_A 470 -------------------------------------------------------------EVGERGVKLSGGQKQRLSI 488 (578)
T ss_dssp -------------------------------------------------------------BCCGGGTTSCHHHHHHHHH
T ss_pred -------------------------------------------------------------hhccCCCcCCHHHHHHHHH
Confidence 0112234689999999999
Q ss_pred eeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 307 EKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 307 ~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+++++. +++++|+|||+.+-+..+.. .+.+.+.+.. .++|+++.+|+++... ...++.++
T Consensus 489 Aral~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~~-~~~t~i~itH~l~~~~--~~d~i~~l 548 (578)
T 4a82_A 489 ARIFLN------NPPILILDEATSALDLESES-----------IIQEALDVLS-KDRTTLIVAHRLSTIT--HADKIVVI 548 (578)
T ss_dssp HHHHHH------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHT-TTSEEEEECSSGGGTT--TCSEEEEE
T ss_pred HHHHHc------CCCEEEEECccccCCHHHHH-----------HHHHHHHHHc-CCCEEEEEecCHHHHH--cCCEEEEE
Confidence 999998 99999999998776654442 4455555443 3688999999987643 36777766
Q ss_pred c
Q psy91 387 D 387 (541)
Q Consensus 387 p 387 (541)
+
T Consensus 549 ~ 549 (578)
T 4a82_A 549 E 549 (578)
T ss_dssp E
T ss_pred E
Confidence 4
No 48
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.8e-21 Score=215.00 Aligned_cols=203 Identities=18% Similarity=0.195 Sum_probs=139.9
Q ss_pred CCceeeecccccccc-cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccc
Q psy91 77 RDYIGFATLPEQVHR-KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKV 147 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~-~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~ 147 (541)
.+.|+++||+++|++ +++|+|+||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +.....
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~---~~g~~----i~~~~~ 424 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL---VDGID----IRKIKR 424 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEE---ETTEE----GGGSCH
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEE---ECCEE----hhhCCH
Confidence 356999999999974 57999999999 9999999999999999944 57789999 88883 333333
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
...++.+|||+|++.+++ . |++||+.++... .. .+.+.++++.+++....+. .-.|++.
T Consensus 425 ~~~r~~i~~v~Q~~~lf~-~------tv~eni~~~~~~--~~----~~~~~~~~~~~~~~~~~~~----~~~g~~t---- 483 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFS-T------TVKENLKYGNPG--AT----DEEIKEAAKLTHSDHFIKH----LPEGYET---- 483 (598)
T ss_dssp HHHHHHEEEECTTCCCCS-S------BHHHHHHSSSTT--CC----TTHHHHHTTTTTCHHHHHT----STTGGGC----
T ss_pred HHHHhceEEEeCCCcccc-c------cHHHHHhcCCCC--CC----HHHHHHHHHHhCCHHHHHh----ccccccc----
Confidence 345668999999998873 5 899999987311 11 1223333333333211000 0000000
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
.+| .....+|+|++|+++|+
T Consensus 484 ---------------------------------------~~~---------------------~~g~~LSgGq~Qrv~iA 503 (598)
T 3qf4_B 484 ---------------------------------------VLT---------------------DNGEDLSQGQRQLLAIT 503 (598)
T ss_dssp ---------------------------------------BCH---------------------HHHTTSCHHHHHHHHHH
T ss_pred ---------------------------------------hhc---------------------CCCCCCCHHHHHHHHHH
Confidence 000 11235899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.+-+..+.. .+.+.+.+.. .++|+++.+|+++... ...++.+++
T Consensus 504 ral~~------~p~illlDEpts~LD~~~~~-----------~i~~~l~~~~-~~~t~i~itH~l~~~~--~~d~i~~l~ 563 (598)
T 3qf4_B 504 RAFLA------NPKILILDEATSNVDTKTEK-----------SIQAAMWKLM-EGKTSIIIAHRLNTIK--NADLIIVLR 563 (598)
T ss_dssp HHHHT------CCSEEEECCCCTTCCHHHHH-----------HHHHHHHHHH-TTSEEEEESCCTTHHH--HCSEEEEEC
T ss_pred HHHhc------CCCEEEEECCccCCCHHHHH-----------HHHHHHHHHc-CCCEEEEEecCHHHHH--cCCEEEEEE
Confidence 99998 99999999998876654443 4455555543 4789999999988653 367777765
No 49
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.77 E-value=1.1e-19 Score=182.62 Aligned_cols=184 Identities=14% Similarity=0.143 Sum_probs=115.2
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
+.+.++||++.+ +.+|+++||+| ||+|||||||||||++|+|. +.+|+|. ++|
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~---~~g-------------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSG-------------- 99 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE---CCS--------------
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE---ECC--------------
Confidence 458899998853 67999999999 99999999999999999654 5567777 554
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
.++||+|+..+++ . ||+||+. +. .. .. ..+..++..+++...
T Consensus 100 ---~i~~v~Q~~~l~~-~------tv~enl~-~~-~~--~~----~~~~~~~~~~~l~~~-------------------- 141 (290)
T 2bbs_A 100 ---RISFCSQNSWIMP-G------TIKENII-GV-SY--DE----YRYRSVIKACQLEED-------------------- 141 (290)
T ss_dssp ---CEEEECSSCCCCS-S------BHHHHHH-TT-CC--CH----HHHHHHHHHTTCHHH--------------------
T ss_pred ---EEEEEeCCCccCc-c------cHHHHhh-Cc-cc--ch----HHHHHHHHHhChHHH--------------------
Confidence 3799999988765 6 8999987 42 11 11 112223333333210
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhccc-ccCCCCCCCCCCCCCCcceEEee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~-~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
++.+... .......+..+|+|++|++.|++
T Consensus 142 -------------------------------------------------l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr 172 (290)
T 2bbs_A 142 -------------------------------------------------ISKFAEKDNIVLGEGGITLSGGQRARISLAR 172 (290)
T ss_dssp -------------------------------------------------HHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred -------------------------------------------------HHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence 0000000 00112235679999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh-hhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF-NDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l-~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||..|-+..... .+.+++ .+. ..++++++.+|+++... .+.++.++.
T Consensus 173 aL~~------~p~lllLDEPts~LD~~~~~-----------~i~~~ll~~~-~~~~tviivtHd~~~~~--~~d~i~~l~ 232 (290)
T 2bbs_A 173 AVYK------DADLYLLDSPFGYLDVLTEK-----------EIFESCVCKL-MANKTRILVTSKMEHLK--KADKILILH 232 (290)
T ss_dssp HHHS------CCSEEEEESTTTTCCHHHHH-----------HHHHHCCCCC-TTTSEEEEECCCHHHHH--HSSEEEEEE
T ss_pred HHHC------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHh-hCCCEEEEEecCHHHHH--cCCEEEEEE
Confidence 9998 99999999998876655443 454543 233 24789999999987543 366666664
No 50
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.77 E-value=1.3e-19 Score=216.02 Aligned_cols=205 Identities=20% Similarity=0.261 Sum_probs=145.0
Q ss_pred CCceeeeccccccccc---ceeecceEEE------EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHRK---SVKKGFDFTL------MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~---~iL~~isl~i------aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|+|+||+++|+++ ++|+||||+| ||+||||||||||+++| +..|.+|+|. ++|. ++...
T Consensus 1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~---iDG~----di~~i 1146 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIF---IDGS----EIKTL 1146 (1321)
T ss_dssp CCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEE---ETTE----ETTTB
T ss_pred CCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEE---ECCE----EhhhC
Confidence 4579999999999643 6999999999 99999999999999999 5567889999 8888 44444
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.....++++++|+|++.||. | |++||+.|+.-+...+ .+.+.++++..|+.+.- ..+ +
T Consensus 1147 ~~~~lR~~i~~V~Qdp~LF~---g----TIreNI~~gld~~~~s----d~ei~~Al~~a~l~~~I--------~~L--p- 1204 (1321)
T 4f4c_A 1147 NPEHTRSQIAIVSQEPTLFD---C----SIAENIIYGLDPSSVT----MAQVEEAARLANIHNFI--------AEL--P- 1204 (1321)
T ss_dssp CHHHHHTTEEEECSSCCCCS---E----EHHHHHSSSSCTTTSC----HHHHHHHHHHTTCHHHH--------HTS--T-
T ss_pred CHHHHHhheEEECCCCEeeC---c----cHHHHHhccCCCCCCC----HHHHHHHHHHhCChHHH--------HcC--c-
Confidence 45566778999999999984 3 8999999984332222 33466677777764321 111 0
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
+|++- .+|+.| ..+|+||+|+++
T Consensus 1205 ---------------------------------~GldT---~vge~G---------------------~~LSgGQrQria 1227 (1321)
T 4f4c_A 1205 ---------------------------------EGFET---RVGDRG---------------------TQLSGGQKQRIA 1227 (1321)
T ss_dssp ---------------------------------TTTCS---EETTTS---------------------CSSCHHHHHHHH
T ss_pred ---------------------------------CCCCC---EecCCC---------------------cccCHHHHHHHH
Confidence 11110 123333 358999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+|+++. +++++|+|||+..-+..++. .+.+.|++. ..++|+++..|.+.- ..-..++.|
T Consensus 1228 iARAllr------~~~ILiLDEaTSaLD~~tE~-----------~Iq~~l~~~-~~~~TvI~IAHRLsT--i~~aD~I~V 1287 (1321)
T 4f4c_A 1228 IARALVR------NPKILLLDEATSALDTESEK-----------VVQEALDRA-REGRTCIVIAHRLNT--VMNADCIAV 1287 (1321)
T ss_dssp HHHHHHS------CCSEEEEESCCCSTTSHHHH-----------HHHHHHTTT-SSSSEEEEECSSSST--TTTCSEEEE
T ss_pred HHHHHHh------CCCEEEEeCccccCCHHHHH-----------HHHHHHHHH-cCCCEEEEeccCHHH--HHhCCEEEE
Confidence 9999998 99999999997764443332 333334332 347899988887543 234566666
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 1288 ld 1289 (1321)
T 4f4c_A 1288 VS 1289 (1321)
T ss_dssp ES
T ss_pred EE
Confidence 64
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.75 E-value=2.2e-19 Score=213.46 Aligned_cols=203 Identities=17% Similarity=0.212 Sum_probs=139.9
Q ss_pred CCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|+++||+++|++ .++|+||||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +...
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~---i~g~~----i~~~ 457 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS---IDGQD----IRTI 457 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEE---ETTEE----GGGS
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---ECCEE----HHhC
Confidence 457999999999975 36999999999 9999999999999999944 57789999 88883 3333
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
.....++.+|||+|++.+++ . |++||+.++.... . .+.+..++...++... +...-.|++.
T Consensus 458 ~~~~~r~~i~~v~Q~~~l~~-~------ti~eNi~~g~~~~--~----~~~~~~~~~~~~~~~~----i~~l~~g~~t-- 518 (1284)
T 3g5u_A 458 NVRYLREIIGVVSQEPVLFA-T------TIAENIRYGREDV--T----MDEIEKAVKEANAYDF----IMKLPHQFDT-- 518 (1284)
T ss_dssp CHHHHHHHEEEECSSCCCCS-S------CHHHHHHHHCSSC--C----HHHHHHHHHHTTCHHH----HHHSTTGGGC--
T ss_pred CHHHHHhheEEEcCCCccCC-c------cHHHHHhcCCCCC--C----HHHHHHHHHHhCcHHH----HHhccccccc--
Confidence 33445567999999998874 4 8999999983211 1 1223344444443221 0000000000
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
........+|+||+|+++
T Consensus 519 --------------------------------------------------------------~~~~~g~~LSgGq~Qria 536 (1284)
T 3g5u_A 519 --------------------------------------------------------------LVGERGAQLSGGQKQRIA 536 (1284)
T ss_dssp --------------------------------------------------------------CCSSSSCSSCHHHHHHHH
T ss_pred --------------------------------------------------------------cccCCCCccCHHHHHHHH
Confidence 111234568999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||+.+-+..... .+.+.+... ..++|+++.+|++..... ..++.+
T Consensus 537 iARal~~------~p~iliLDEpts~LD~~~~~-----------~i~~~l~~~-~~~~t~i~itH~l~~i~~--~d~i~v 596 (1284)
T 3g5u_A 537 IARALVR------NPKILLLDEATSALDTESEA-----------VVQAALDKA-REGRTTIVIAHRLSTVRN--ADVIAG 596 (1284)
T ss_dssp HHHHHHH------CCSEEEEESTTCSSCHHHHH-----------HHHHHHHHH-HTTSEEEEECSCHHHHTT--CSEEEE
T ss_pred HHHHHhc------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHH-cCCCEEEEEecCHHHHHc--CCEEEE
Confidence 9999998 99999999997765543332 344444433 348899999998875532 567776
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 597 l~ 598 (1284)
T 3g5u_A 597 FD 598 (1284)
T ss_dssp CS
T ss_pred EE
Confidence 64
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.75 E-value=4.1e-19 Score=211.76 Aligned_cols=204 Identities=17% Similarity=0.232 Sum_probs=142.4
Q ss_pred CCCceeeecccccccc---cceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccc
Q psy91 76 DRDYIGFATLPEQVHR---KSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAG 144 (541)
Q Consensus 76 ~~~~i~~~~l~~~~~~---~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~ 144 (541)
..+.|+|+|++++|++ +++|+|+||+| ||+||||||||||+++|+ ..+..|+|. ++|. ++..
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~---idG~----~i~~ 484 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT---IDGV----DVRD 484 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEE---ETTE----ETTT
T ss_pred CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCccc---CCCc----cchh
Confidence 3457999999999964 57999999999 999999999999999994 467889999 8888 4444
Q ss_pred cccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccccc
Q psy91 145 TKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 224 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~ 224 (541)
......+..+|||+|++.||.. |++||+.|++-. . ..+.+.++++..++... +..+ +
T Consensus 485 ~~~~~lr~~i~~v~Q~~~Lf~~-------TI~eNI~~g~~~--~----~~~~v~~a~~~a~l~~~--------i~~l--p 541 (1321)
T 4f4c_A 485 INLEFLRKNVAVVSQEPALFNC-------TIEENISLGKEG--I----TREEMVAACKMANAEKF--------IKTL--P 541 (1321)
T ss_dssp SCHHHHHHHEEEECSSCCCCSE-------EHHHHHHTTCTT--C----CHHHHHHHHHHTTCHHH--------HHHS--T
T ss_pred ccHHHHhhcccccCCcceeeCC-------chhHHHhhhccc--c----hHHHHHHHHHHccchhH--------HHcC--C
Confidence 4445566789999999999842 899999998311 1 22345566666665431 1111 0
Q ss_pred CCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcce
Q psy91 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT 304 (541)
Q Consensus 225 ~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v 304 (541)
+ |.+ -.+|+.| ..+||||+||+
T Consensus 542 ~----------------------------------G~~---T~vGe~G---------------------~~LSGGQkQRi 563 (1321)
T 4f4c_A 542 N----------------------------------GYN---TLVGDRG---------------------TQLSGGQKQRI 563 (1321)
T ss_dssp T----------------------------------TTS---SEESSSS---------------------CCCCHHHHHHH
T ss_pred C----------------------------------CCc---cEecCCC---------------------CCCCHHHHHHH
Confidence 0 000 0134433 35899999999
Q ss_pred EEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeE
Q psy91 305 TIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLT 384 (541)
Q Consensus 305 ~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvn 384 (541)
+|+|+.+. +++++|+|||...-+..++. .+.+.|.+. ..+||+++.+|.+... +...++.
T Consensus 564 aiARAl~~------~~~IliLDE~tSaLD~~te~-----------~i~~~l~~~-~~~~T~iiiaHrls~i--~~aD~Ii 623 (1321)
T 4f4c_A 564 AIARALVR------NPKILLLDEATSALDAESEG-----------IVQQALDKA-AKGRTTIIIAHRLSTI--RNADLII 623 (1321)
T ss_dssp HHHHHHTT------CCSEEEEESTTTTSCTTTHH-----------HHHHHHHHH-HTTSEEEEECSCTTTT--TTCSEEE
T ss_pred HHHHHHcc------CCCEEEEecccccCCHHHHH-----------HHHHHHHHH-hCCCEEEEEcccHHHH--HhCCEEE
Confidence 99999999 99999999996655444443 333333322 2488999999886643 3445565
Q ss_pred EEc
Q psy91 385 VVD 387 (541)
Q Consensus 385 vIp 387 (541)
+++
T Consensus 624 vl~ 626 (1321)
T 4f4c_A 624 SCK 626 (1321)
T ss_dssp EEE
T ss_pred Eee
Confidence 554
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.74 E-value=3.6e-19 Score=211.69 Aligned_cols=205 Identities=17% Similarity=0.200 Sum_probs=143.2
Q ss_pred CCceeeeccccccccc---ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccc
Q psy91 77 RDYIGFATLPEQVHRK---SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGT 145 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~---~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~ 145 (541)
.+.|.++||+++|+++ ++|+|+||+| ||+||||||||||+++|++ .+.+|+|. ++|.+ +...
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~---i~g~~----i~~~ 1100 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF---LDGKE----IKQL 1100 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE---SSSSC----TTSS
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE---ECCEE----cccC
Confidence 4579999999999753 6999999999 9999999999999999954 67789999 88883 3333
Q ss_pred ccccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccC
Q psy91 146 KVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYG 225 (541)
Q Consensus 146 ~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~ 225 (541)
..+..++.++||+|++.++ .. |++||+.++........ +.+..+++..++.....+. -.|++.
T Consensus 1101 ~~~~~r~~i~~v~Q~~~l~-~~------ti~eNi~~~~~~~~~~~----~~i~~~~~~~~~~~~i~~l----~~gldt-- 1163 (1284)
T 3g5u_A 1101 NVQWLRAQLGIVSQEPILF-DC------SIAENIAYGDNSRVVSY----EEIVRAAKEANIHQFIDSL----PDKYNT-- 1163 (1284)
T ss_dssp CHHHHTTSCEEEESSCCCC-SS------BHHHHHTCCCSSCCCCH----HHHHHHHHHHTCHHHHSST----TTGGGC--
T ss_pred CHHHHHhceEEECCCCccc-cc------cHHHHHhccCCCCCCCH----HHHHHHHHHhCcHHHHHhC----cccccc--
Confidence 3344566899999999776 35 99999998743222222 2233444444443211100 000000
Q ss_pred CCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceE
Q psy91 226 DRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305 (541)
Q Consensus 226 ~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~ 305 (541)
.+| .....+|||++|+++
T Consensus 1164 -----------------------------------------~vg---------------------e~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1164 -----------------------------------------RVG---------------------DKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp -----------------------------------------BCS---------------------TTSCSSCHHHHHHHH
T ss_pred -----------------------------------------ccC---------------------CCCCccCHHHHHHHH
Confidence 011 123468999999999
Q ss_pred EeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEE
Q psy91 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385 (541)
Q Consensus 306 I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnv 385 (541)
|+++++. +++++|+|||+.|-+..... .+.+.+.+. ..++|+++.+|+++... .+.++.+
T Consensus 1182 iARal~~------~p~iLiLDEpTs~lD~~~~~-----------~i~~~l~~~-~~~~tvi~isH~l~~i~--~~dri~v 1241 (1284)
T 3g5u_A 1182 IARALVR------QPHILLLDEATSALDTESEK-----------VVQEALDKA-REGRTCIVIAHRLSTIQ--NADLIVV 1241 (1284)
T ss_dssp HHHHHHH------CCSSEEEESCSSSCCHHHHH-----------HHHHHHHHH-SSSSCEEEECSCTTGGG--SCSEEEE
T ss_pred HHHHHHc------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHh-CCCCEEEEEecCHHHHH--cCCEEEE
Confidence 9999998 99999999998887655543 444555443 34889999999987543 3677777
Q ss_pred Ec
Q psy91 386 VD 387 (541)
Q Consensus 386 Ip 387 (541)
++
T Consensus 1242 l~ 1243 (1284)
T 3g5u_A 1242 IQ 1243 (1284)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.70 E-value=5e-18 Score=186.85 Aligned_cols=182 Identities=14% Similarity=0.070 Sum_probs=132.0
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..+.++++++.|++. .|++++|+| ||+|||||||||||++|+|. +..|+|. +
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~---~---------------- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE---W---------------- 415 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC---C----------------
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE---E----------------
Confidence 468999999999864 689999888 99999999999999999664 4556555 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
...+|||+|+..+.+.+ ||.+++.+... ......+.+..+++.+|+.+
T Consensus 416 -~~~i~~v~Q~~~~~~~~------tv~e~~~~~~~----~~~~~~~~~~~~l~~~~l~~--------------------- 463 (607)
T 3bk7_A 416 -DLTVAYKPQYIKAEYEG------TVYELLSKIDS----SKLNSNFYKTELLKPLGIID--------------------- 463 (607)
T ss_dssp -CCCEEEECSSCCCCCSS------BHHHHHHHHHH----HHHHCHHHHHHTHHHHTCTT---------------------
T ss_pred -eeEEEEEecCccCCCCC------cHHHHHHhhhc----cCCCHHHHHHHHHHHcCCch---------------------
Confidence 13589999998777777 89877654200 00011223444555555432
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
+.++.+..+|+|++|++.|+++
T Consensus 464 ----------------------------------------------------------~~~~~~~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 464 ----------------------------------------------------------LYDRNVEDLSGGELQRVAIAAT 485 (607)
T ss_dssp ----------------------------------------------------------TTTSBGGGCCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------HhcCChhhCCHHHHHHHHHHHH
Confidence 2344566799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +++++|+|||+.|.+..... .+.+.|.+.. +.+.++++.+|+++... .+..++.++.
T Consensus 486 L~~------~p~lLlLDEPt~~LD~~~~~-----------~l~~~l~~l~~~~g~tvi~vsHd~~~~~-~~adrv~vl~ 546 (607)
T 3bk7_A 486 LLR------DADIYLLDEPSAYLDVEQRL-----------AVSRAIRHLMEKNEKTALVVEHDVLMID-YVSDRLIVFE 546 (607)
T ss_dssp HTS------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HHh------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEc
Confidence 988 99999999998887765553 5666666654 34789999999977543 4667777775
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.68 E-value=4.2e-18 Score=185.02 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=127.8
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
...+.++++++.|++. .|..++++| ||+|||||||||||++|+| .+.+|+|. +.|.
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~---~~~~------------ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT---PEKQ------------ 330 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE---SSCC------------
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE---ECCe------------
Confidence 3468899999999874 577778887 9999999999999999965 46677776 4332
Q ss_pred cccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCC
Q psy91 149 GRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRK 228 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~ 228 (541)
.++|++|+....+.. ||.+|+.+..... .. .....+..++
T Consensus 331 ----~i~~~~q~~~~~~~~------tv~~~l~~~~~~~-~~--~~~~~~~~~l--------------------------- 370 (538)
T 3ozx_A 331 ----ILSYKPQRIFPNYDG------TVQQYLENASKDA-LS--TSSWFFEEVT--------------------------- 370 (538)
T ss_dssp ----CEEEECSSCCCCCSS------BHHHHHHHHCSST-TC--TTSHHHHHTT---------------------------
T ss_pred ----eeEeechhcccccCC------CHHHHHHHhhhhc-cc--hhHHHHHHHH---------------------------
Confidence 478999986655556 7877765431000 00 0000111111
Q ss_pred cCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEee
Q psy91 229 VPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308 (541)
Q Consensus 229 i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~ 308 (541)
..+.+.+ +.++.+..+|+|++|++.|++
T Consensus 371 ---------------------------------------------------~~~~l~~-~~~~~~~~LSGGq~QRv~iAr 398 (538)
T 3ozx_A 371 ---------------------------------------------------KRLNLHR-LLESNVNDLSGGELQKLYIAA 398 (538)
T ss_dssp ---------------------------------------------------TTTTGGG-CTTSBGGGCCHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHcCCHH-HhcCChhhCCHHHHHHHHHHH
Confidence 1111222 345567789999999999999
Q ss_pred eEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcc-cCcceeeccccchhhhhcccceeEEEc
Q psy91 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 309 ~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++. +++++|+|||+.|.+..... .+.+.|.+..+ .+.++++.+|+++... .++.++.++.
T Consensus 399 aL~~------~p~lLlLDEPT~gLD~~~~~-----------~i~~~l~~l~~~~g~tvi~vsHdl~~~~-~~aDri~vl~ 460 (538)
T 3ozx_A 399 TLAK------EADLYVLDQPSSYLDVEERY-----------IVAKAIKRVTRERKAVTFIIDHDLSIHD-YIADRIIVFK 460 (538)
T ss_dssp HHHS------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHHTTCEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HHHc------CCCEEEEeCCccCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEe
Confidence 9998 99999999998887765543 56666666654 4788899999987543 4677777774
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.68 E-value=6.4e-18 Score=183.95 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=127.6
Q ss_pred CceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCCCeeecccCCccceeccccccccc
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNGSNTVIEVAGTKVRG 149 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G~i~~~~~~G~~~~~~~~~~~~~~ 149 (541)
..+.++++++.|++. .|++++|+| ||+|||||||||||++|+|. +..|+|. +
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~---~---------------- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE---W---------------- 345 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC---C----------------
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE---E----------------
Confidence 468999999999764 689999888 99999999999999999664 4555554 2
Q ss_pred ccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCc
Q psy91 150 RQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKV 229 (541)
Q Consensus 150 ~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i 229 (541)
...+|||+|+..+.+.+ ||.+++..... ... ...+.+..+++.+|+
T Consensus 346 -~~~i~~v~Q~~~~~~~~------tv~~~~~~~~~-~~~---~~~~~~~~~l~~~~l----------------------- 391 (538)
T 1yqt_A 346 -DLTVAYKPQYIKADYEG------TVYELLSKIDA-SKL---NSNFYKTELLKPLGI----------------------- 391 (538)
T ss_dssp -CCCEEEECSSCCCCCSS------BHHHHHHHHHH-HHH---TCHHHHHHTTTTTTC-----------------------
T ss_pred -CceEEEEecCCcCCCCC------cHHHHHHhhhc-cCC---CHHHHHHHHHHHcCC-----------------------
Confidence 12589999998777777 88776543200 000 001112222222221
Q ss_pred CCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee
Q psy91 230 PNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309 (541)
Q Consensus 230 ~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~ 309 (541)
.+ ..++.+..+|+|++|++.|+++
T Consensus 392 -------------------------------------------------------~~-~~~~~~~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 392 -------------------------------------------------------ID-LYDREVNELSGGELQRVAIAAT 415 (538)
T ss_dssp -------------------------------------------------------GG-GTTSBGGGCCHHHHHHHHHHHH
T ss_pred -------------------------------------------------------hh-hhcCChhhCCHHHHHHHHHHHH
Confidence 11 2345567799999999999999
Q ss_pred EEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 310 SMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 310 ~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++. +++++|+|||+.|-+..... .+.+.|.+.. +.+.++++.+|+++... .++.++.++.
T Consensus 416 L~~------~p~lLlLDEPt~~LD~~~~~-----------~i~~~l~~l~~~~g~tvi~vsHd~~~~~-~~~drv~vl~ 476 (538)
T 1yqt_A 416 LLR------DADIYLLDEPSAYLDVEQRL-----------AVSRAIRHLMEKNEKTALVVEHDVLMID-YVSDRLMVFE 476 (538)
T ss_dssp HTS------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHHHTCEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred HHh------CCCEEEEeCCcccCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEe
Confidence 988 99999999998887766553 5666666654 34789999999977543 4667777774
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.67 E-value=4.7e-18 Score=187.02 Aligned_cols=193 Identities=13% Similarity=0.077 Sum_probs=126.2
Q ss_pred eccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeec------ccCCccceeccccccc
Q psy91 83 ATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVP------NVNGSNTVIEVAGTKV 147 (541)
Q Consensus 83 ~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~------~~~G~~~~~~~~~~~~ 147 (541)
+||+++|++. .+|+++| +| ||+|||||||||||++|+| .++.|++... .+.|..+... ....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~--~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNY--FERL 171 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHH--HHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhh--hhhh
Confidence 8999999877 4999999 76 9999999999999999965 4667875100 0445422100 0000
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
......+++++|...+.+.+ ...||.+++... +..+++.++++.+|+.+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~---~~~tv~e~l~~~---------~~~~~~~~~L~~lgL~~------------------- 220 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKA---VKGKVRELLKKV---------DEVGKFEEVVKELELEN------------------- 220 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGT---CCSBHHHHHHHT---------CCSSCHHHHHHHTTCTT-------------------
T ss_pred hhhhcceEEeechhhhchhh---ccccHHHHhhhh---------HHHHHHHHHHHHcCCCc-------------------
Confidence 11223567888875544432 111455544321 11233455555555533
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 221 ------------------------------------------------------------~~~~~~~~LSGGekQRvaIA 240 (607)
T 3bk7_A 221 ------------------------------------------------------------VLDRELHQLSGGELQRVAIA 240 (607)
T ss_dssp ------------------------------------------------------------GGGSBGGGCCHHHHHHHHHH
T ss_pred ------------------------------------------------------------hhCCChhhCCHHHHHHHHHH
Confidence 22344567899999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +++++|+|||+.|.+..... ++.++|.+..+.+.++++.+|++++. ..+..++.++.
T Consensus 241 raL~~------~P~lLlLDEPTs~LD~~~~~-----------~l~~~L~~l~~~g~tvIivsHdl~~~-~~~adri~vl~ 302 (607)
T 3bk7_A 241 AALLR------KAHFYFFDEPSSYLDIRQRL-----------KVARVIRRLANEGKAVLVVEHDLAVL-DYLSDVIHVVY 302 (607)
T ss_dssp HHHHS------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHH-HHHCSEEEEEE
T ss_pred HHHhc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEecChHHH-HhhCCEEEEEC
Confidence 99998 99999999998876655443 56666666655588999999998754 34666776664
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.67 E-value=6e-18 Score=184.13 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=124.1
Q ss_pred eccccccccc-ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeec------ccCCccceeccccccc
Q psy91 83 ATLPEQVHRK-SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVP------NVNGSNTVIEVAGTKV 147 (541)
Q Consensus 83 ~~l~~~~~~~-~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~------~~~G~~~~~~~~~~~~ 147 (541)
+||+++|+++ .+|+++| +| ||+|||||||||||++|+| .++.|++... .+.|..+... ....
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~--~~~~ 101 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY--FEKL 101 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH--HHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH--HHHH
Confidence 4789999876 4899999 76 9999999999999999965 4667775100 0445422100 0001
Q ss_pred ccccccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCC
Q psy91 148 RGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 227 (541)
Q Consensus 148 ~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~ 227 (541)
......+++++|...+++.+ ...++.+++.. .+..+++.++++.+|+..
T Consensus 102 ~~~~~~~~~~~q~~~~~~~~---~~~~v~e~~~~---------~~~~~~~~~~l~~lgl~~------------------- 150 (538)
T 1yqt_A 102 KNGEIRPVVKPQYVDLIPKA---VKGKVIELLKK---------ADETGKLEEVVKALELEN------------------- 150 (538)
T ss_dssp HTTSCCCEEECSCGGGSGGG---CCSBHHHHHHH---------HCSSSCHHHHHHHTTCTT-------------------
T ss_pred HHHhhhhhhhhhhhhhcchh---hhccHHHHHhh---------hhHHHHHHHHHHHcCCCh-------------------
Confidence 11223578888876554432 01133333211 111223444455444432
Q ss_pred CcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEe
Q psy91 228 KVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307 (541)
Q Consensus 228 ~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~ 307 (541)
..++.+..+|+|++|++.|+
T Consensus 151 ------------------------------------------------------------~~~~~~~~LSgGekQRv~iA 170 (538)
T 1yqt_A 151 ------------------------------------------------------------VLEREIQHLSGGELQRVAIA 170 (538)
T ss_dssp ------------------------------------------------------------TTTSBGGGCCHHHHHHHHHH
T ss_pred ------------------------------------------------------------hhhCChhhCCHHHHHHHHHH
Confidence 23445667999999999999
Q ss_pred eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 308 ~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
++++. +|+++|+|||+.+.+..... ++.++|.+..+.+.++++.+|+++.. ..++.++.++.
T Consensus 171 raL~~------~P~lLlLDEPTs~LD~~~~~-----------~l~~~L~~l~~~g~tvi~vsHd~~~~-~~~~dri~vl~ 232 (538)
T 1yqt_A 171 AALLR------NATFYFFDEPSSYLDIRQRL-----------NAARAIRRLSEEGKSVLVVEHDLAVL-DYLSDIIHVVY 232 (538)
T ss_dssp HHHHS------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECSCHHHH-HHHCSEEEEEE
T ss_pred HHHhc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEc
Confidence 99998 99999999998876655443 56666666655688999999998744 34666776663
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.61 E-value=6.6e-17 Score=184.34 Aligned_cols=178 Identities=13% Similarity=0.085 Sum_probs=128.1
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~ 152 (541)
.+...|+++.|+++.+|+++||+| +|+|||||||||||++|++ |.| .|. ... . ..
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag----G~i-----~g~----~~~-----~-~~ 495 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----GQV-----DGF----PTQ-----E-EC 495 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH----TCS-----TTC----CCT-----T-TS
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC----CCc-----CCC----ccc-----c-ce
Confidence 566679999999999999999999 9999999999999999974 433 233 110 0 12
Q ss_pred cEEEEeCCC-ccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcCC
Q psy91 153 PWGVVEGST-VLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 231 (541)
Q Consensus 153 ~~g~V~Q~~-~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~ 231 (541)
.++|++|+. .+++.+ |+.+++.+. .. +. .+++..+++.+|+..
T Consensus 496 ~~~~v~q~~~~~~~~l------tv~e~l~~~-~~-~~-----~~~v~~~L~~lgL~~----------------------- 539 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDT------SVLDFVFES-GV-GT-----KEAIKDKLIEFGFTD----------------------- 539 (986)
T ss_dssp CEEETTCCCCCCCTTS------BHHHHHHTT-CS-SC-----HHHHHHHHHHTTCCH-----------------------
T ss_pred eEEEEcccccccccCC------cHHHHHHHh-hc-CH-----HHHHHHHHHHcCCCh-----------------------
Confidence 368888874 677788 999988652 11 11 345666677776631
Q ss_pred CCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEE
Q psy91 232 VNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSM 311 (541)
Q Consensus 232 ~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~ 311 (541)
.+.++.+..+|+|++|++.|+++++
T Consensus 540 -------------------------------------------------------~~~~~~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 540 -------------------------------------------------------EMIAMPISALSGGWKMKLALARAVL 564 (986)
T ss_dssp -------------------------------------------------------HHHHSBGGGCCHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------hhhcCCcccCCHHHHHHHHHHHHHh
Confidence 0112234568999999999999999
Q ss_pred EeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 312 DIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 312 ~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
. +++++|+|||+.|.+..+.. .+.++|.+ .+.++++.+|+++... .+..++.++.
T Consensus 565 ~------~P~lLLLDEPTs~LD~~~~~-----------~l~~~L~~---~g~tvIivSHdl~~l~-~~adrii~L~ 619 (986)
T 2iw3_A 565 R------NADILLLDEPTNHLDTVNVA-----------WLVNYLNT---CGITSITISHDSVFLD-NVCEYIINYE 619 (986)
T ss_dssp T------TCSEEEEESTTTTCCHHHHH-----------HHHHHHHH---SCSEEEEECSCHHHHH-HHCSEEEEEE
T ss_pred c------CCCEEEEECCccCCCHHHHH-----------HHHHHHHh---CCCEEEEEECCHHHHH-HhCCEEEEEE
Confidence 8 99999999998887665543 56666665 4789999999977543 3556666654
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.60 E-value=4.2e-17 Score=185.95 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=46.9
Q ss_pred CCceeeecccccccc--cceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 77 RDYIGFATLPEQVHR--KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~--~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
.+.+.++|++++|++ +++|+++||+| ||+|||||||||||++|+| .+.+|+|+
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 346999999999975 67999999999 9999999999999999955 46788888
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.9e-16 Score=172.58 Aligned_cols=180 Identities=14% Similarity=0.052 Sum_probs=121.3
Q ss_pred ecccccccc-cceeecceEEE-----------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccc
Q psy91 83 ATLPEQVHR-KSVKKGFDFTL-----------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 83 ~~l~~~~~~-~~iL~~isl~i-----------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.++++.|++ ..++++++|++ ||+|||||||||||++|+|...+ ..|+. . .
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-------~~G~~----~-------~ 411 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-------DEGQD----I-------P 411 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-------SBCCC----C-------C
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-------CCCcC----c-------c
Confidence 567788865 35789999887 79999999999999999765443 34541 1 1
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhccccccCCCCcC
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP 230 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~ 230 (541)
...++|++|+....... ||.+++... ...... ....+..+++.+|+
T Consensus 412 ~~~i~~~~q~~~~~~~~------tv~e~~~~~-~~~~~~---~~~~~~~~l~~l~l------------------------ 457 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPG------TVRQLFFKK-IRGQFL---NPQFQTDVVKPLRI------------------------ 457 (608)
T ss_dssp SCCEEEECSSCCCCCCS------BHHHHHHHH-CSSTTT---SHHHHHHTHHHHTS------------------------
T ss_pred CCcEEEecccccccCCc------cHHHHHHHH-hhcccc---cHHHHHHHHHHcCC------------------------
Confidence 23589999986655555 777655321 100000 01122223333333
Q ss_pred CCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 231 NVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 231 ~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
.+ +.++.+..+|+|++|++.|++++
T Consensus 458 ------------------------------------------------------~~-~~~~~~~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 458 ------------------------------------------------------DD-IIDQEVQHLSGGELQRVAIVLAL 482 (608)
T ss_dssp ------------------------------------------------------TT-TSSSBSSSCCHHHHHHHHHHHHT
T ss_pred ------------------------------------------------------hh-hhcCChhhCCHHHHHHHHHHHHH
Confidence 22 34556778999999999999999
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc-ccCcceeeccccchhhhhcccceeEEEc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN-RQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~-~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+. +++++|+|||+.|.+..... .+.+.+.+.. +.+.++++.+|+++... .++.++.++.
T Consensus 483 ~~------~p~lLlLDEPT~gLD~~~~~-----------~i~~ll~~l~~~~g~tviivtHdl~~~~-~~aDrvivl~ 542 (608)
T 3j16_B 483 GI------PADIYLIDEPSAYLDSEQRI-----------ICSKVIRRFILHNKKTAFIVEHDFIMAT-YLADKVIVFE 542 (608)
T ss_dssp TS------CCSEEEECCTTTTCCHHHHH-----------HHHHHHHHHHHHHTCEEEEECSCHHHHH-HHCSEEEECE
T ss_pred Hh------CCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHHHhCCCEEEEEeCCHHHHH-HhCCEEEEEe
Confidence 88 99999999998887665543 5556666654 35889999999987544 4667777664
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.55 E-value=4.1e-16 Score=174.53 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=67.6
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee--EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR--LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~--L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
+..+.+.+...++.+..+|+|++|++.|+++++. +|+ ++|+|||+.|.+..... .+.++|.
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~------~p~~~lLlLDEPtsgLD~~~~~-----------~l~~~l~ 248 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS------RLTGVLYVLDEPSIGLHQRDND-----------RLIATLK 248 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHT------CCCSCEEEEECTTTTCCGGGHH-----------HHHHHHH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhh------CCCCCEEEEECCccCCCHHHHH-----------HHHHHHH
Confidence 4444444434566788899999999999999987 777 99999998887765553 6666777
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+..+.+.++++++|++++.. ...++.++
T Consensus 249 ~l~~~g~tvi~vtHd~~~~~--~~d~ii~l 276 (670)
T 3ux8_A 249 SMRDLGNTLIVVEHDEDTML--AADYLIDI 276 (670)
T ss_dssp HHHHTTCEEEEECCCHHHHH--HCSEEEEE
T ss_pred HHHHcCCEEEEEeCCHHHHh--hCCEEEEe
Confidence 76666889999999988543 36677766
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.4e-15 Score=164.12 Aligned_cols=82 Identities=7% Similarity=0.034 Sum_probs=64.2
Q ss_pred CCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceee
Q psy91 288 YGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTI 367 (541)
Q Consensus 288 ~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i 367 (541)
..++.+..+|+|++|+++|+++++. +++++|+|||+.|.+..... .+.+++.+..+.+.++++
T Consensus 214 ~~~~~~~~LSgGe~Qrv~iAraL~~------~p~llllDEPts~LD~~~~~-----------~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 214 VLKRDIEKLSGGELQRFAIGMSCVQ------EADVYMFDEPSSYLDVKQRL-----------NAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp GGGSCTTTCCHHHHHHHHHHHHHHS------CCSEEEEECTTTTCCHHHHH-----------HHHHHHHGGGTTTCEEEE
T ss_pred hhCCChHHCCHHHHHHHHHHHHHHh------CCCEEEEECcccCCCHHHHH-----------HHHHHHHHHHhCCCEEEE
Confidence 3455677899999999999999998 99999999998876654443 566667776666889999
Q ss_pred ccccchhhhhcccceeEEEc
Q psy91 368 EKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 368 ~~~~~di~~~~l~~rvnvIp 387 (541)
.+|+++... .+..++.++.
T Consensus 277 vtHdl~~~~-~~~drv~vl~ 295 (608)
T 3j16_B 277 VEHDLSVLD-YLSDFVCIIY 295 (608)
T ss_dssp ECSCHHHHH-HHCSEEEEEE
T ss_pred EeCCHHHHH-HhCCEEEEEe
Confidence 999987554 4667777763
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.44 E-value=1.8e-14 Score=156.44 Aligned_cols=80 Identities=4% Similarity=0.039 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeec
Q psy91 289 GDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIE 368 (541)
Q Consensus 289 ~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~ 368 (541)
.++.+..+|+|++|++.|+++++. +++++|+|||+.+.+..... .+.+++.+..+ +.++++.
T Consensus 132 ~~~~~~~LSgGe~Qrv~iA~aL~~------~p~illlDEPts~LD~~~~~-----------~l~~~l~~l~~-g~tii~v 193 (538)
T 3ozx_A 132 WNKDANILSGGGLQRLLVAASLLR------EADVYIFDQPSSYLDVRERM-----------NMAKAIRELLK-NKYVIVV 193 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHS------CCSEEEEESTTTTCCHHHHH-----------HHHHHHHHHCT-TSEEEEE
T ss_pred hcCChhhCCHHHHHHHHHHHHHHc------CCCEEEEECCcccCCHHHHH-----------HHHHHHHHHhC-CCEEEEE
Confidence 345566799999999999999998 99999999998876655443 55566666655 8899999
Q ss_pred cccchhhhhcccceeEEEc
Q psy91 369 KKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 369 ~~~~di~~~~l~~rvnvIp 387 (541)
+|+++... .++.++.++.
T Consensus 194 sHdl~~~~-~~~d~i~vl~ 211 (538)
T 3ozx_A 194 DHDLIVLD-YLTDLIHIIY 211 (538)
T ss_dssp CSCHHHHH-HHCSEEEEEE
T ss_pred EeChHHHH-hhCCEEEEec
Confidence 99987543 4666766663
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.41 E-value=2.6e-14 Score=159.87 Aligned_cols=89 Identities=9% Similarity=0.139 Sum_probs=65.8
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee---eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL---RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF 355 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~---~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l 355 (541)
+..+.+.....++.+..+|+|++|++.|+++++. ++ +++|+|||+.|.+..... .+.+.+
T Consensus 527 l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~------~p~~p~llllDEPt~~LD~~~~~-----------~i~~~l 589 (670)
T 3ux8_A 527 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR------RSNGRTLYILDEPTTGLHVDDIA-----------RLLDVL 589 (670)
T ss_dssp HHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHS------CCCSCEEEEEESTTTTCCHHHHH-----------HHHHHH
T ss_pred HHHcCCchhhccCCchhCCHHHHHHHHHHHHHhh------CCCCCcEEEEeCCCCCCCHHHHH-----------HHHHHH
Confidence 3344443323456778899999999999999876 54 699999998887655543 566666
Q ss_pred hhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 356 NDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 356 ~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
.+..+.+.++++++|++++. ..+.++.++
T Consensus 590 ~~l~~~g~tvi~vtHd~~~~--~~~d~i~~l 618 (670)
T 3ux8_A 590 HRLVDNGDTVLVIEHNLDVI--KTADYIIDL 618 (670)
T ss_dssp HHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred HHHHHCCCEEEEEeCCHHHH--HhCCEEEEe
Confidence 66666688999999998864 347777777
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.40 E-value=1.4e-14 Score=138.44 Aligned_cols=55 Identities=5% Similarity=0.035 Sum_probs=39.6
Q ss_pred CCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 299 RQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 299 g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
|++|++.|+++++. +++++|+|||..| ... .+.++|.+. +.+.+++ .+|+++..+
T Consensus 108 Gq~qrv~lAraL~~------~p~lllLDEPts~----~~~-----------~l~~~l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 108 VEVAPLAYMRGRTL------NDAFVILDEAQNT----TPA-----------QMKMFLTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp EEEEEGGGGTTCCB------CSEEEEECSGGGC----CHH-----------HHHHHHTTB-CTTCEEE-EEEC-----
T ss_pred chHHHHHHHHHHhc------CCCEEEEeCCccc----cHH-----------HHHHHHHHh-cCCCEEE-EECCHHHHh
Confidence 89999999999998 9999999999877 221 555666665 4567777 888876443
No 67
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.3e-15 Score=162.27 Aligned_cols=77 Identities=21% Similarity=0.187 Sum_probs=58.2
Q ss_pred CCceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcC--CCCC-C-eeecccCCccceecccccc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLS--DLYG-D-RKVPNVNGSNTVIEVAGTK 146 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~--~~~G-~-i~~~~~~G~~~~~~~~~~~ 146 (541)
.+.+.++||++.|+ ++++++ +|+||||||||||||+|++. +..| + |+ ++|.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~---vdg~---------- 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLY---INLD---------- 176 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEE---EECC----------
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEE---EcCC----------
Confidence 45689999999996 577766 99999999999999999554 4567 7 77 5552
Q ss_pred cccccccEEEEeCCCcccc---ccccccCCCcccceecc
Q psy91 147 VRGRQYPWGVVEGSTVLTP---SLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 147 ~~~~~~~~g~V~Q~~~l~~---~lig~~~qtv~e~l~~~ 182 (541)
.++.++||+|+..+++ .+ ++.+|+ |+
T Consensus 177 ---~~~~i~~vpq~~~l~~~~~~~------tv~eni-~~ 205 (460)
T 2npi_A 177 ---PQQPIFTVPGCISATPISDIL------DAQLPT-WG 205 (460)
T ss_dssp ---TTSCSSSCSSCCEEEECCSCC------CTTCTT-CS
T ss_pred ---ccCCeeeeccchhhccccccc------chhhhh-cc
Confidence 1346789999886543 35 777777 65
No 68
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=137.06 Aligned_cols=69 Identities=36% Similarity=0.406 Sum_probs=41.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDR 176 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~ 176 (541)
+|.+||+||||||||||||+|+ ..+..|+|. +.|.. ... ...++.++|++|+..+++.+ ||.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~---~~g~~----i~~---~~~~~~i~~v~q~~~~~~~l------tv~ 65 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSW---NREEK----IPK---TVEIKAIGHVIEEGGVKMKL------TVI 65 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-------------------CCC---CCSCCEEEESCC----CCEE------EEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccc---cCCcc----cCc---ceeeeeeEEEeecCCCcCCc------eEE
Confidence 5677999999999999999994 467789998 77772 211 12345799999999999999 999
Q ss_pred cceeccc
Q psy91 177 DYIGFAT 183 (541)
Q Consensus 177 e~l~~~~ 183 (541)
+|+.|+.
T Consensus 66 d~~~~g~ 72 (270)
T 3sop_A 66 DTPGFGD 72 (270)
T ss_dssp CCCC--C
T ss_pred echhhhh
Confidence 9999873
No 69
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.27 E-value=5e-13 Score=135.51 Aligned_cols=33 Identities=3% Similarity=-0.014 Sum_probs=28.8
Q ss_pred CCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 293 VPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 293 ~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
++.+|+|++|++.++++++. +++++|+|+|..+
T Consensus 174 ~~~lS~G~~qRv~~a~al~~------~p~ilIlDep~~~ 206 (312)
T 3aez_A 174 APVYSHLHYDIIPGAEQVVR------HPDILILEGLNVL 206 (312)
T ss_dssp EEEEETTTTEEEEEEEEEEC------SCSEEEEECTTTT
T ss_pred cccCChhhhhhhhhHHHhcc------CCCEEEECCcccc
Confidence 45688999999999999888 8999999999555
No 70
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.24 E-value=1e-12 Score=149.04 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=68.8
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
++..+.+.....++.+..+|+|++|++.|+++++. +-..++|+|+|||+.|.+..... .+.+.|.+
T Consensus 828 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~---~p~~p~lLILDEPTsGLD~~~~~-----------~l~~lL~~ 893 (972)
T 2r6f_A 828 TLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHR---RSNGRTLYILDEPTTGLHVDDIA-----------RLLDVLHR 893 (972)
T ss_dssp HHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSS---CCCSCEEEEEECTTTTCCHHHHH-----------HHHHHHHH
T ss_pred HHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhc---CCCCCCEEEEECCCCCCCHHHHH-----------HHHHHHHH
Confidence 45555555434566788899999999999999875 00025999999999987765543 56666766
Q ss_pred hcccCcceeeccccchhhhhcccceeEEE
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..+.+.++++.+|+++.. ....++.++
T Consensus 894 L~~~G~TVIvisHdl~~i--~~aDrIivL 920 (972)
T 2r6f_A 894 LVDNGDTVLVIEHNLDVI--KTADYIIDL 920 (972)
T ss_dssp HHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred HHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 666688999999998864 357777777
No 71
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.21 E-value=1.8e-12 Score=146.51 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=69.2
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCee---eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK---LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQY 354 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~---~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~ 354 (541)
++..+.+.....++.+..+|+|++|++.|+++++. + ++|+|+|||+.|.+..... ++.+.
T Consensus 713 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~------~p~~p~lLILDEPTsGLD~~~~~-----------~l~~l 775 (842)
T 2vf7_A 713 TLREVGLGYLRLGQPATELSGGEAQRIKLATELRR------SGRGGTVYVLDEPTTGLHPADVE-----------RLQRQ 775 (842)
T ss_dssp HHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSS------CCSSCEEEEEECTTTTCCHHHHH-----------HHHHH
T ss_pred HHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHh------CCCCCCEEEEECCCCCCCHHHHH-----------HHHHH
Confidence 45555554433466778899999999999999876 5 6999999999987765543 66667
Q ss_pred hhhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 355 FNDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 355 l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
|.+..+.+.++++.+|+++.. ..+.++.++
T Consensus 776 L~~L~~~G~tVIvisHdl~~i--~~aDrii~L 805 (842)
T 2vf7_A 776 LVKLVDAGNTVIAVEHKMQVV--AASDWVLDI 805 (842)
T ss_dssp HHHHHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred HHHHHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 777666789999999998866 357777777
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.20 E-value=3.1e-12 Score=145.52 Aligned_cols=93 Identities=11% Similarity=0.162 Sum_probs=68.5
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
++..+.+.....++.+..+|+|++|++.|+++++. +-..++|+|+|||+.|.+..... ++.+.|.+
T Consensus 846 ~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~---~p~~p~lLILDEPTsGLD~~~~~-----------~l~~lL~~ 911 (993)
T 2ygr_A 846 TLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQK---RSTGRTVYILDEPTTGLHFDDIR-----------KLLNVING 911 (993)
T ss_dssp HHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSS---CCCSSEEEEEESTTTTCCHHHHH-----------HHHHHHHH
T ss_pred HHHHcCCCcccccCccccCCHHHHHHHHHHHHHHh---CCCCCCEEEEECCCCCCCHHHHH-----------HHHHHHHH
Confidence 45555554434566788899999999999999875 00025999999999987765543 56666766
Q ss_pred hcccCcceeeccccchhhhhcccceeEEE
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..+.+.++++.+|+++.. ..+.++.++
T Consensus 912 L~~~G~TVIvisHdl~~i--~~aDrIivL 938 (993)
T 2ygr_A 912 LVDKGNTVIVIEHNLDVI--KTSDWIIDL 938 (993)
T ss_dssp HHHTTCEEEEECCCHHHH--TTCSEEEEE
T ss_pred HHhCCCEEEEEcCCHHHH--HhCCEEEEE
Confidence 666688999999998864 357777777
No 73
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.19 E-value=6.8e-12 Score=142.97 Aligned_cols=93 Identities=10% Similarity=0.169 Sum_probs=67.1
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFND 357 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~ 357 (541)
.+..+.+......+.+..+|||++|++.|+++++. +-.+++|+|+|||+.|.+..... ++.+.|.+
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~---~p~~p~LLILDEPTsGLD~~~~~-----------~L~~lL~~ 853 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK---RDTGRTLYILDEPTVGLHFEDVR-----------KLVEVLHR 853 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS---CCCSSEEEEEESTTTTCCHHHHH-----------HHHHHHHH
T ss_pred HHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh---CCCCCCEEEEECCCCCCCHHHHH-----------HHHHHHHH
Confidence 44444444434456778899999999999999865 00135899999998887665543 56666766
Q ss_pred hcccCcceeeccccchhhhhcccceeEEE
Q psy91 358 ENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 358 e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
..+.+.|+++.+|+++... ...++.++
T Consensus 854 L~~~G~TVIvI~HdL~~i~--~ADrIivL 880 (916)
T 3pih_A 854 LVDRGNTVIVIEHNLDVIK--NADHIIDL 880 (916)
T ss_dssp HHHTTCEEEEECCCHHHHT--TCSEEEEE
T ss_pred HHhcCCEEEEEeCCHHHHH--hCCEEEEe
Confidence 6666899999999988653 36777666
No 74
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.18 E-value=2.7e-12 Score=141.67 Aligned_cols=94 Identities=15% Similarity=0.024 Sum_probs=52.9
Q ss_pred ceeeeccccccccc--ceeecce----------EEE---EEEcCCCCCHHHHHHHHhcC--C-CCCCeeecccCCcccee
Q psy91 79 YIGFATLPEQVHRK--SVKKGFD----------FTL---MVVGESGLGKSTLVNSLFLS--D-LYGDRKVPNVNGSNTVI 140 (541)
Q Consensus 79 ~i~~~~l~~~~~~~--~iL~~is----------l~i---aIiGpSGsGKSTLL~~L~~~--~-~~G~i~~~~~~G~~~~~ 140 (541)
.+.+.+|+..|+.+ ++|+.++ +++ ||+|||||||||||++|+|. | .+|.|+ +.|..+..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt---~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVT---RCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC-------CC---CSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEE---EcCEEEEE
Confidence 46778888888753 3444332 333 99999999999999999665 4 689999 88875321
Q ss_pred cccccccccccccEEEEeCCCccccccccccCCCcccceecc
Q psy91 141 EVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 141 ~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
. .......+++.+||++|+..+++.+ +|.+++.++
T Consensus 87 ~-~~~~~~~~~~~i~~v~Q~~~l~~~~------tv~e~i~~~ 121 (608)
T 3szr_A 87 K-KLVNEDKWRGKVSYQDYEIEISDAS------EVEKEINKA 121 (608)
T ss_dssp E-ECSSSSCCEEEESCC---CCCCCHH------HHHTTHHHH
T ss_pred e-cCCccccceeEEeeecccccCCCHH------HHHHHHHHH
Confidence 1 1111224456789999999999888 898888764
No 75
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.11 E-value=4.8e-12 Score=115.44 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=63.4
Q ss_pred eeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc-CCCCCCeeecccCCccceeccccccccccccc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL-SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYP 153 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~-~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~ 153 (541)
...++++.|+++.+++++||++ +|+||||||||||+++|++ .+.+|+|. +.|..+.. . ....
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~---~~g~~i~~----~--~~~~-- 77 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVK---SPTYTLVE----E--YNIA-- 77 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCC---CCTTTCEE----E--EEET--
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEE---ECCEeeee----e--ccCC--
Confidence 4457788998888999999887 9999999999999999932 27789999 88874321 1 1111
Q ss_pred EEEEeCCCccccccccccCCCcccceec
Q psy91 154 WGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 154 ~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
.+++|+..++ .+ |+.+++.+
T Consensus 78 -~~~~q~~~l~-~l------tv~e~l~~ 97 (158)
T 1htw_A 78 -GKMIYHFDLY-RL------ADPEELEF 97 (158)
T ss_dssp -TEEEEEEECT-TC------SCTTHHHH
T ss_pred -Ccceeccccc-cC------CcHHHHHH
Confidence 1799998888 88 99998854
No 76
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.07 E-value=5e-12 Score=133.08 Aligned_cols=71 Identities=7% Similarity=-0.040 Sum_probs=54.9
Q ss_pred CCCCCCcceEEeeeEEEeeecCeee--eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccch
Q psy91 296 VNDRQGKTTTIEKKSMDIEERGVKL--RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMD 373 (541)
Q Consensus 296 ls~g~~q~v~I~~~~~~i~e~gv~~--~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~d 373 (541)
+|+|++|++.|+++++. ++ +++|+|||..|-+..... .+.++|.+.. .+.++++.+|+.+
T Consensus 296 lSgGe~qrl~lA~~l~~------~~~~~~LlLDEpt~~LD~~~~~-----------~l~~~L~~l~-~~~~vi~itH~~~ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVL------GADTPSVVFDEVDAGIGGAAAI-----------AVAEQLSRLA-DTRQVLVVTHLAQ 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHH------CCSSSEEEESSTTTTCCHHHHH-----------HHHHHHHHHT-TTSEEEEECSCHH
T ss_pred cCHhHHHHHHHHHHHHh------CCCCCEEEEECCCCCCCHHHHH-----------HHHHHHHHHh-CCCEEEEEeCcHH
Confidence 59999999999998766 67 999999998886655443 5666676665 4788999999987
Q ss_pred hhhhcccceeEEE
Q psy91 374 IEERGVKLRLTVV 386 (541)
Q Consensus 374 i~~~~l~~rvnvI 386 (541)
+.. ...++.++
T Consensus 358 ~~~--~~d~i~~l 368 (415)
T 4aby_A 358 IAA--RAHHHYKV 368 (415)
T ss_dssp HHT--TCSEEEEE
T ss_pred HHh--hcCeEEEE
Confidence 653 46677666
No 77
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=1.7e-10 Score=121.16 Aligned_cols=90 Identities=51% Similarity=0.655 Sum_probs=53.9
Q ss_pred CCceeeecccccccccceeecceEEEEEEcCCCCCHHHHHHHHhcCCC--CCCeeecccCCccceecccccccccccccE
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL--YGDRKVPNVNGSNTVIEVAGTKVRGRQYPW 154 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~iaIiGpSGsGKSTLL~~L~~~~~--~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~ 154 (541)
.+.|++++|+++|+++.++++++|.|+|+||||||||||+++|++... +| ..|. ....... .....+
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~------~~~~----~~~~~~t-~~~~~i 77 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPE------YPGP----SHRIKKT-VQVEQS 77 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCC------CCSC----C-----C-CEEEEE
T ss_pred cCcEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCC------CCCc----ccCCccc-eeeeeE
Confidence 456899999999999999999999999999999999999999966432 32 1111 1111111 122457
Q ss_pred EEEeCCCccccccccccCCCcccceeccc
Q psy91 155 GVVEGSTVLTPSLIGSLFQTDRDYIGFAT 183 (541)
Q Consensus 155 g~V~Q~~~l~~~lig~~~qtv~e~l~~~~ 183 (541)
++++|...+++.+ ++.+|+.++.
T Consensus 78 ~~v~q~~~~~~~L------tv~Dt~g~~~ 100 (418)
T 2qag_C 78 KVLIKEGGVQLLL------TIVDTPGFGD 100 (418)
T ss_dssp ECC------CEEE------EEEECC----
T ss_pred EEEEecCCcccce------eeeechhhhh
Confidence 8999999998899 9999999873
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.91 E-value=8e-11 Score=108.62 Aligned_cols=74 Identities=11% Similarity=-0.032 Sum_probs=48.5
Q ss_pred CCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhh-----hhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 297 NDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESW-----RACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 297 s~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~-----~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
|++++|++.|++++.. +++++++|||..|-+..+..-. ..++.-...++.+.+.+..+.+.++++.+|+
T Consensus 85 s~g~~qrv~iAral~~------~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~ 158 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHC------FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS 158 (171)
T ss_dssp HHHHHHHHHHHHHTTC------EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHHHcCC------cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence 6678899999999877 9999999999665433221000 0001111235566666665568899999999
Q ss_pred chhhh
Q psy91 372 MDIEE 376 (541)
Q Consensus 372 ~di~~ 376 (541)
++...
T Consensus 159 ~~~~~ 163 (171)
T 4gp7_A 159 PEEVE 163 (171)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87554
No 79
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.91 E-value=5.4e-10 Score=109.09 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=37.7
Q ss_pred ccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCc
Q psy91 89 VHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTV 162 (541)
Q Consensus 89 ~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~ 162 (541)
-+++.+|+++||++ ||+||||||||||+++|++.. |.+. ++ ..++.++|++|+.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l--G~~~---~~--------------~~~~~i~~v~~d~- 68 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL--GQNE---VE--------------QRQRKVVILSQDR- 68 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH--TGGG---SC--------------GGGCSEEEEEGGG-
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh--chhc---cc--------------ccCCceEEEeCCc-
Confidence 35678999999998 999999999999999996532 4443 22 1245689999984
Q ss_pred cccccccccCCCcccceec
Q psy91 163 LTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 163 l~~~lig~~~qtv~e~l~~ 181 (541)
+++.+ ++.+++.+
T Consensus 69 ~~~~l------~~~~~~~~ 81 (245)
T 2jeo_A 69 FYKVL------TAEQKAKA 81 (245)
T ss_dssp GBCCC------CHHHHHHH
T ss_pred Ccccc------CHhHhhhh
Confidence 66667 77665543
No 80
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.90 E-value=5.5e-11 Score=110.58 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=28.4
Q ss_pred CCCCCCCCCcceEEeee-----EEEeeecCeeeeEEEEcC--CCCCCC
Q psy91 293 VPNVNDRQGKTTTIEKK-----SMDIEERGVKLRLTVVDT--PGFGDS 333 (541)
Q Consensus 293 ~~~ls~g~~q~v~I~~~-----~~~i~e~gv~~~L~I~De--Pg~Gd~ 333 (541)
+..+|+|++|++.|+++ +.. +++++|+|| |..+.+
T Consensus 74 ~~~lSgG~~qr~~la~aa~~~~l~~------~p~llilDEigp~~~ld 115 (178)
T 1ye8_A 74 GVNVQYFEELAIPILERAYREAKKD------RRKVIIIDEIGKMELFS 115 (178)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHC------TTCEEEECCCSTTGGGC
T ss_pred ccCcCHHHHHHHHHHhhcccccccc------CCCEEEEeCCCCcccCC
Confidence 44578999999999996 666 899999999 766544
No 81
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.88 E-value=9.6e-10 Score=110.83 Aligned_cols=93 Identities=18% Similarity=0.081 Sum_probs=56.7
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeeccc---CCccceecccccccccccccEEEEeCCCc---------------
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNV---NGSNTVIEVAGTKVRGRQYPWGVVEGSTV--------------- 162 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~---~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~--------------- 162 (541)
+|+||||||||||||+|++ .+..|+|. + .|..+. ......+.+.+|||+|.+.
T Consensus 173 ~l~G~sG~GKSTll~~l~g~~~~~~G~i~---~~~~~g~~~t----~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~ 245 (301)
T 1u0l_A 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVS---EKLQRGRHTT----TTAQLLKFDFGGYVVDTPGFANLEINDIEPEELK 245 (301)
T ss_dssp EEECSTTSSHHHHHHHHSTTCCCC----------------CC----CSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHG
T ss_pred EEECCCCCcHHHHHHHhccccccccccee---cccCCCCCce----eeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHH
Confidence 9999999999999999944 57789998 6 676322 1111112235799999875
Q ss_pred -cccccccccCCCcccceeccccccchhhHhHhhhHHHHHHHhCCC-Cccch
Q psy91 163 -LTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGES-GLGKS 212 (541)
Q Consensus 163 -l~~~lig~~~qtv~e~l~~~~~~~~~~~~e~~~~v~~~L~~vGL~-g~~ks 212 (541)
++|++ ++ +|+.|+... ...+...++.++|+.+||. +..++
T Consensus 246 ~l~~~~------~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L~~~~~~~ 287 (301)
T 1u0l_A 246 HYFKEF------GD-KQCFFSDCN---HVDEPECGVKEAVENGEIAESRYEN 287 (301)
T ss_dssp GGSTTS------SS-CCCSSTTCC---SSSCSSCHHHHHHHHTSSCHHHHHH
T ss_pred HHHHhc------cc-ccCcCCCCc---CCCCCCcHHHHHHHcCCCCHHHHHH
Confidence 46666 78 888886221 1234556788999999996 44443
No 82
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.86 E-value=7.4e-10 Score=111.65 Aligned_cols=83 Identities=47% Similarity=0.546 Sum_probs=37.2
Q ss_pred ecccccccccceeecceEEEEEEcCCCCCHHHHHHHHhcC---CCCCCeeecccCCccceecccccccccccccEEEEeC
Q psy91 83 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLS---DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 83 ~~l~~~~~~~~iL~~isl~iaIiGpSGsGKSTLL~~L~~~---~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
.||+++|+++.++++++|.|+|+||||||||||+++|++. +..| +. ..|..+ .. ... ...+++++|
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~---~~g~~~----~~--t~~-~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS---GAAEKI----ER--TVQ-IEASTVEIE 70 (301)
T ss_dssp ----------------CEEEEEEEETTSSHHHHHHHHHC-----------------------------------CEEEEC
T ss_pred CCCcceECCEEEEcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc---cCCccc----CC--cce-EeeEEEEec
Confidence 4788999999999999999999999999999999998543 4556 55 555421 11 111 235789999
Q ss_pred CCccccccccccCCCcccceecc
Q psy91 160 STVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 160 ~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
...+...+ ++.+++.++
T Consensus 71 ~~~~~~~l------tv~Dt~g~~ 87 (301)
T 2qnr_A 71 ERGVKLRL------TVVDTPGYG 87 (301)
T ss_dssp ---CCEEE------EEEEEC---
T ss_pred CCCcccCc------chhhhhhhh
Confidence 98888888 999998886
No 83
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.84 E-value=5.1e-10 Score=117.28 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=55.1
Q ss_pred ceeeecccccccccceeecceEEE--------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL--------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i--------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.+.+.+ ++.|++.+ |+++|+++ ||+|||||||||||++|+|... .|..+. .......
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---------~g~~~~----~~~~~~~ 80 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---------EGEPAT----HTQPGVQ 80 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------------CCSSCE
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---------cCCcCC----CCCccce
Confidence 345555 77888777 88888765 8999999999999999987632 233111 0001112
Q ss_pred cccEEEEeCCCccccccccccCCCcccceeccc
Q psy91 151 QYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFAT 183 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~~~ 183 (541)
...++|++|+..+++.+ |+.+|+.|+.
T Consensus 81 ~~~i~~v~Q~~~l~~~l------tv~D~~~~g~ 107 (427)
T 2qag_B 81 LQSNTYDLQESNVRLKL------TIVSTVGFGD 107 (427)
T ss_dssp EEEEEEEEEC--CEEEE------EEEEEECCCC
T ss_pred EeeEEEEeecCcccccc------chhhhhhhhh
Confidence 34689999999999999 9999999984
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.80 E-value=3.4e-10 Score=107.57 Aligned_cols=64 Identities=20% Similarity=0.046 Sum_probs=43.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceec
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
+|+||||||||||+++|++... .+. +.+... . ..+....++.++|++|+..+++.+ ++.+++..
T Consensus 24 ~l~GpnGsGKSTLl~~l~gl~~--~i~---~~~~~~--~--~~~~~~~~~~i~~~~q~~~~~~~~------~~~~~l~~ 87 (207)
T 1znw_A 24 VLSGPSAVGKSTVVRCLRERIP--NLH---FSVSAT--T--RAPRPGEVDGVDYHFIDPTRFQQL------IDQGELLE 87 (207)
T ss_dssp EEECSTTSSHHHHHHHHHHHST--TCE---ECCCEE--S--SCCCTTCCBTTTBEECCHHHHHHH------HHTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHhhCC--ceE---Eccccc--c--cCCcccccCCCeeEecCHHHHHHH------HhcCCcee
Confidence 9999999999999999965432 344 433311 1 111112245689999999888888 88877753
No 85
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.78 E-value=1e-09 Score=105.25 Aligned_cols=68 Identities=15% Similarity=0.016 Sum_probs=40.6
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCcccc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTP 165 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~ 165 (541)
...|++|||+| +|+||||||||||+++|++.. +|.|. + |..+.. ..+....+..++|++|+..+++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-pG~i~---~-g~~~~~---~~~~~~~~~~i~~~~~~~~~~~ 81 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-PNYFY---F-SVSCTT---RKKREKEKEGVDYYFIDKTIFE 81 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-TTTEE---E-CCCEEC---SCCCSSCCBTTTBEECCHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-CCcEE---E-eecccC---CCCCcccccCCeEEECCHHHHH
Confidence 34689999998 999999999999999996644 39998 6 652211 1111123456899999988887
Q ss_pred cc
Q psy91 166 SL 167 (541)
Q Consensus 166 ~l 167 (541)
.+
T Consensus 82 ~~ 83 (218)
T 1z6g_A 82 DK 83 (218)
T ss_dssp HH
T ss_pred Hh
Confidence 66
No 86
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.75 E-value=6.8e-10 Score=113.01 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecc
Q psy91 290 DRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEK 369 (541)
Q Consensus 290 ~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~ 369 (541)
+..+..+|+|++|++.|+++++... --+++++|+|||..+.+..... .+.+++.+.. .+.++++.+
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~--~~~~~~lllDEp~~~LD~~~~~-----------~l~~~l~~~~-~~~~vi~~t 279 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALME--IKPSPFYVLDEVDSPLDDYNAE-----------RFKRLLKENS-KHTQFIVIT 279 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTT--TSCCSEEEEESCCSSCCHHHHH-----------HHHHHHHHHT-TTSEEEEEC
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhc--cCCCCEEEEeCCCCCCCHHHHH-----------HHHHHHHHhc-CCCeEEEEE
Confidence 3445679999999999999874100 0167999999998876654432 4555555543 367888899
Q ss_pred ccchh
Q psy91 370 KSMDI 374 (541)
Q Consensus 370 ~~~di 374 (541)
|+.++
T Consensus 280 H~~~~ 284 (322)
T 1e69_A 280 HNKIV 284 (322)
T ss_dssp CCTTG
T ss_pred CCHHH
Confidence 98654
No 87
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.74 E-value=6.8e-09 Score=104.65 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=62.1
Q ss_pred EEEcCCCCCHHHHHHHHh-cCCCCCCeeeccc---CCccceecccccccccccccEEEEeCCCccc-----cccccccCC
Q psy91 103 MVVGESGLGKSTLVNSLF-LSDLYGDRKVPNV---NGSNTVIEVAGTKVRGRQYPWGVVEGSTVLT-----PSLIGSLFQ 173 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~-~~~~~G~i~~~~~---~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~-----~~lig~~~q 173 (541)
+|+||||||||||+|+|+ ..+..|+|. + .|+.+. ..........+|||+|.+.+. +++
T Consensus 169 ~l~G~sG~GKSTLln~l~~~~~~~G~i~---~~~~~G~~~t----~~~~~~~~~~~g~v~d~pg~~~~~l~~~l------ 235 (302)
T 2yv5_A 169 ILAGPSGVGKSSILSRLTGEELRTQEVS---EKTERGRHTT----TGVRLIPFGKGSFVGDTPGFSKVEATMFV------ 235 (302)
T ss_dssp EEECSTTSSHHHHHHHHHSCCCCCSCC------------CC----CCEEEEEETTTEEEESSCCCSSCCGGGTS------
T ss_pred EEECCCCCCHHHHHHHHHHhhCcccccc---cccCCCCCce----eeEEEEEcCCCcEEEECcCcCcCcccccC------
Confidence 999999999999999996 345689998 6 666221 111111123579999988653 667
Q ss_pred Ccccce--ecccc------ccc-hhhHhHhhhHHHHHHHhCCCCccchhhhhhhcc
Q psy91 174 TDRDYI--GFATL------PEQ-VHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 220 (541)
Q Consensus 174 tv~e~l--~~~~~------~~~-~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~g 220 (541)
|+ +++ .|+.+ ... ....+...++.++++.+|+...........+.+
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~ 290 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKV 290 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTC
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 88 777 45411 011 123344567889999999986333334444444
No 88
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.73 E-value=4.1e-10 Score=113.30 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=42.5
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCee
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRK 129 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~ 129 (541)
.|.+++|++.|+ ..+|+++|++| ||+||||||||||+++|++.. .|.|.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~ 155 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVL 155 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEE
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEE
Confidence 488999999998 78999999988 999999999999999996643 55553
No 89
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.71 E-value=9.9e-10 Score=116.26 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=69.0
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCc---cceecccc-
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGS---NTVIEVAG- 144 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~---~~~~~~~~- 144 (541)
+.+.++++++.|+ +..+|+++ |.| +|+|||||||||||++|+ ..++.|.|. +.|+ .+......
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~---~~G~r~~ev~~~~~~~ 205 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVG---LIGERGREVKDFIENI 205 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE---EESCCHHHHHHHHHTT
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEE---EeceecHHHHHHHHhh
Confidence 4689999999998 67899999 988 999999999999999994 456678887 6665 21110000
Q ss_pred cccccccccEEEEeCC-CccccccccccCCCcccceecc
Q psy91 145 TKVRGRQYPWGVVEGS-TVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 145 ~~~~~~~~~~g~V~Q~-~~l~~~lig~~~qtv~e~l~~~ 182 (541)
......++.++||+|+ ..+++++ ++.+|+.+.
T Consensus 206 ~~~~~l~r~i~~v~q~~~~~~~~~------~v~~~~~~~ 238 (438)
T 2dpy_A 206 LGPDGRARSVVIAAPADVSPLLRM------QGAAYATRI 238 (438)
T ss_dssp THHHHHHTEEEEEECTTSCHHHHH------HHHHHHHHH
T ss_pred ccccccCceEEEEECCCCCHHHHH------HHHHHHHHH
Confidence 0011244578999994 6677778 888777654
No 90
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.62 E-value=5.7e-09 Score=108.01 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccc
Q psy91 291 RKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKK 370 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~ 370 (541)
+.+..+|+|++|++.|+++++.-..--.+|+++|+|||..|.+..... .+.++|.+..+.+.++++.+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~-----------~~~~~l~~l~~~g~tvi~itH 343 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKE-----------KIASVLKELERLNKVIVFITH 343 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHH-----------HHHHHHHGGGGSSSEEEEEES
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHH-----------HHHHHHHHHHhCCCEEEEEec
Confidence 456679999999999998876100000179999999998876654443 566677777667899999999
Q ss_pred cchhhhhcccceeEEE
Q psy91 371 SMDIEERGVKLRLTVV 386 (541)
Q Consensus 371 ~~di~~~~l~~rvnvI 386 (541)
++++. ....++.++
T Consensus 344 ~~~~~--~~~d~~~~l 357 (365)
T 3qf7_A 344 DREFS--EAFDRKLRI 357 (365)
T ss_dssp CHHHH--TTCSCEEEE
T ss_pred chHHH--HhCCEEEEE
Confidence 98863 344566655
No 91
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.57 E-value=1.7e-09 Score=110.72 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=57.3
Q ss_pred ceeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGR 150 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~ 150 (541)
.|+++++++.|+...+|+++++.+ +|+|||||||||||++|++ .+..|.|. +.|.+......+......
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~---i~~~d~~~~~~~~~~~~~ 105 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVA---VLAVDPSSTRTGGSILGD 105 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE---EEEECGGGGSSCCCSSCC
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEE---EEEEcCcccccccchHHH
Confidence 467888999998888999999876 9999999999999999943 45578887 555522111100011122
Q ss_pred cccEEEEeCCCccccc
Q psy91 151 QYPWGVVEGSTVLTPS 166 (541)
Q Consensus 151 ~~~~g~V~Q~~~l~~~ 166 (541)
+..+++++|+..+++.
T Consensus 106 ~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 106 KTRMARLAIDRNAFIR 121 (337)
T ss_dssp GGGSTTGGGCTTEEEE
T ss_pred hhhheeeccCcccccc
Confidence 3456677776655543
No 92
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.53 E-value=1.1e-08 Score=105.61 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=57.3
Q ss_pred eeeccccc---ccc--ccee---------ecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccc
Q psy91 81 GFATLPEQ---VHR--KSVK---------KGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNT 138 (541)
Q Consensus 81 ~~~~l~~~---~~~--~~iL---------~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~ 138 (541)
.|++++++ |+. ..+| +++++.| +|+||||||||||+++|++ .+..|.|. +.|..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~---ie~~~- 212 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT---IEDVP- 212 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE---EESSS-
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE---ECCcc-
Confidence 77788877 753 3445 9999887 9999999999999999944 45678888 55541
Q ss_pred eecccccccccccccEEEEe-CCCcc--ccccccccCCCcccceecc
Q psy91 139 VIEVAGTKVRGRQYPWGVVE-GSTVL--TPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 139 ~~~~~~~~~~~~~~~~g~V~-Q~~~l--~~~lig~~~qtv~e~l~~~ 182 (541)
.. .....+..+++++ |+..+ ++.. |+++++.++
T Consensus 213 --e~---~~~~~~~~v~~v~~q~~~~~~~~~~------t~~~~i~~~ 248 (361)
T 2gza_A 213 --EL---FLPDHPNHVHLFYPSEAKEEENAPV------TAATLLRSC 248 (361)
T ss_dssp --CC---CCTTCSSEEEEECC----------C------CHHHHHHHH
T ss_pred --cc---CccccCCEEEEeecCcccccccccc------CHHHHHHHH
Confidence 11 1112345689999 77654 3556 888888876
No 93
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.51 E-value=4.6e-09 Score=105.81 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=48.2
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceeccccccccc--ccccEEEEeCCCc-cccccccccCCCccc
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRG--RQYPWGVVEGSTV-LTPSLIGSLFQTDRD 177 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~--~~~~~g~V~Q~~~-l~~~lig~~~qtv~e 177 (541)
+|+||||||||||+++|++ .+..|.|. +.|.++........... .+..++||+|+.. ++|.+ ++.+
T Consensus 104 ~lvG~nGsGKTTll~~Lag~l~~~~g~V~---l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~------~v~e 174 (302)
T 3b9q_A 104 MIVGVNGGGKTTSLGKLAHRLKNEGTKVL---MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT------VLSK 174 (302)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEE---EECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH------HHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEE---EEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH------HHHH
Confidence 9999999999999999944 45678998 77763211000001111 1346899999988 88888 8888
Q ss_pred ceecc
Q psy91 178 YIGFA 182 (541)
Q Consensus 178 ~l~~~ 182 (541)
++.++
T Consensus 175 ~l~~~ 179 (302)
T 3b9q_A 175 AVKRG 179 (302)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.51 E-value=1.4e-08 Score=114.22 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=36.1
Q ss_pred CCceeeecccccc---cccceeecceE--EE-EEEcCCCCCHHHHHHHHhc
Q psy91 77 RDYIGFATLPEQV---HRKSVKKGFDF--TL-MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 77 ~~~i~~~~l~~~~---~~~~iL~~isl--~i-aIiGpSGsGKSTLL~~L~~ 121 (541)
.+.+.+++..... ++..+++|++| .+ +|+||||||||||||+|++
T Consensus 548 ~~~i~i~~~rHP~le~~~~~vl~disl~g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCCCEEEEESSCEEEEESCSSSSHHHHHHHHHH
T ss_pred CCcEEEEEeECceEccCCceEeeeccCCCcEEEEECCCCCChHHHHHHHHh
Confidence 4567777765555 45678999998 45 9999999999999999954
No 95
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.48 E-value=5.1e-08 Score=102.08 Aligned_cols=76 Identities=22% Similarity=0.155 Sum_probs=54.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDY 178 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~ 178 (541)
.+||+||||||||||||+|+| .+..|+|. ++|.. .. + .++++|+. .++.+ ++.|+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~---~~g~~----~t-------~--~~~v~q~~-~~~~l------tv~D~ 127 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAK---TGVVE----VT-------M--ERHPYKHP-NIPNV------VFWDL 127 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCC---CCC---------------C--CCEEEECS-SCTTE------EEEEC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEE---ECCee----cc-------e--eEEecccc-ccCCe------eehHh
Confidence 459999999999999999955 56788888 66651 11 1 27899974 57778 89998
Q ss_pred eeccccccchhhHhHhhhHHHHHHHhCCCC
Q psy91 179 IGFATLPEQVHRKSVKKGFDFTLMVVGESG 208 (541)
Q Consensus 179 l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g 208 (541)
+.++. . ...+.++++.+++.+
T Consensus 128 ~g~~~-~--------~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 128 PGIGS-T--------NFPPDTYLEKMKFYE 148 (413)
T ss_dssp CCGGG-S--------SCCHHHHHHHTTGGG
T ss_pred hcccc-h--------HHHHHHHHHHcCCCc
Confidence 87762 1 235677788887654
No 96
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.44 E-value=3.5e-08 Score=94.66 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=44.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCC----CCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCc---
Q psy91 103 MVVGESGLGKSTLVNSLFLSD----LYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTD--- 175 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~----~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv--- 175 (541)
+|+||||||||||+++|++.. ..|.|. +.|. . . ....+..++|+||+..+|+.+ ++
T Consensus 20 ~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~---~ttr----~--~--~~~e~~gi~y~fq~~~~f~~~------~~~~~ 82 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVS---HTTR----Q--P--RPGEVHGEHYFFVNHDEFKEM------ISRDA 82 (219)
T ss_dssp EEECCTTSCHHHHHHHHHHHSCTTTEEECCC---EECS----C--C--CTTCCBTTTBEECCHHHHHHH------HHTTC
T ss_pred EEECCCCCCHHHHHHHHhccCCCCceEEEEE---ecCC----C--C--CcccccCceEEECCHHHHHHH------HhcCH
Confidence 899999999999999995432 345555 4443 1 1 112234689999999888888 77
Q ss_pred -ccceecc
Q psy91 176 -RDYIGFA 182 (541)
Q Consensus 176 -~e~l~~~ 182 (541)
.|++.+.
T Consensus 83 f~E~~~~~ 90 (219)
T 1s96_A 83 FLEHAEVF 90 (219)
T ss_dssp EEEEEEET
T ss_pred HHHHHHHH
Confidence 6777764
No 97
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.42 E-value=3.9e-08 Score=92.50 Aligned_cols=64 Identities=20% Similarity=0.130 Sum_probs=44.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceec
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
+|+||||||||||+++|++... .+. +.|..+ ...........++|++|+..+++.+ ++.+++.+
T Consensus 11 ~l~Gp~GsGKSTl~~~L~~~~~--~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 74 (205)
T 3tr0_A 11 IISAPSGAGKTSLVRALVKALA--EIK---ISISHT----TRPKRPGDQEGVDYFFIDETRFQAM------VKEGAFLE 74 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHSS--SEE---ECCCEE----CSCCCTTCCBTTTBEECCHHHHHHH------HHHTCEEE
T ss_pred EEECcCCCCHHHHHHHHHhhCC--CeE---Eeceec----cCCCchhHhcCceEEeccHHHHHHH------HhcCcEEe
Confidence 9999999999999999965432 455 555522 1122122345678999999888888 77666554
No 98
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.42 E-value=3.5e-08 Score=99.32 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=58.9
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeeccc---CCccceecccccccccccccEEEEeCCCcccc----ccccccCC
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNV---NGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTP----SLIGSLFQ 173 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~---~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~----~lig~~~q 173 (541)
+|+||||||||||+|+|++ .+..|+|. . .|+.+. ... .......|||+|.+.+.+ ++
T Consensus 177 ~lvG~sG~GKSTLln~L~g~~~~~~G~I~---~~~~~G~~tt----~~~-~~~~~~~g~v~dtpg~~~~~l~~l------ 242 (307)
T 1t9h_A 177 VFAGQSGVGKSSLLNAISPELGLRTNEIS---EHLGRGKHTT----RHV-ELIHTSGGLVADTPGFSSLEFTDI------ 242 (307)
T ss_dssp EEEESHHHHHHHHHHHHCC----------------------C----CCC-CEEEETTEEEESSCSCSSCCCTTC------
T ss_pred EEECCCCCCHHHHHHHhccccccccccee---eecCCCcccc----cHH-HHhhcCCEEEecCCCccccccccC------
Confidence 9999999999999999954 45678887 5 565221 111 111112699999987765 45
Q ss_pred Cccccee--cccc---------ccchhhHhHhhhHHHHHHHhCCCCccchhhhhhhcccc
Q psy91 174 TDRDYIG--FATL---------PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSD 222 (541)
Q Consensus 174 tv~e~l~--~~~~---------~~~~~~~e~~~~v~~~L~~vGL~g~~ks~l~~~l~gl~ 222 (541)
++ +++. |+.+ .......+....+.++++.+++...........+.++.
T Consensus 243 t~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~ 301 (307)
T 1t9h_A 243 EE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIK 301 (307)
T ss_dssp CH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHh
Confidence 77 7773 3311 00011223445688899999998766666666666553
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.38 E-value=4.1e-08 Score=98.94 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=50.2
Q ss_pred EEEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceeccccccccc--ccccEEEEeCCCccccccccccCCCccc
Q psy91 102 LMVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAGTKVRG--RQYPWGVVEGSTVLTPSLIGSLFQTDRD 177 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~--~~~~~g~V~Q~~~l~~~lig~~~qtv~e 177 (541)
++|+||||||||||+++| ...+..|.|. +.|.++........... .+..++||+|+..++|.. ++.+
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~~g~V~---l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~------~v~~ 175 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVM---FCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAA------LAYD 175 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEE---EECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHH------HHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEE---EEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHH------HHHH
Confidence 399999999999999999 3456789998 77763321100001111 234689999999998888 8888
Q ss_pred ceecc
Q psy91 178 YIGFA 182 (541)
Q Consensus 178 ~l~~~ 182 (541)
++.++
T Consensus 176 ~v~~~ 180 (304)
T 1rj9_A 176 AVQAM 180 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 100
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.37 E-value=2.1e-08 Score=106.48 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=53.7
Q ss_pred ecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccc--cccccccccEEEEeCCCcccc
Q psy91 96 KGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAG--TKVRGRQYPWGVVEGSTVLTP 165 (541)
Q Consensus 96 ~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~--~~~~~~~~~~g~V~Q~~~l~~ 165 (541)
+++||++ +|+||||||||||+++|++ .+..|.|. +.|.++...... ......+..++||+|+..+++
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~---l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM---LAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE---EECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE---EecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 5677754 9999999999999999944 45678888 655422110000 011112456899999988888
Q ss_pred ccccccCCCcccceecc
Q psy91 166 SLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 166 ~lig~~~qtv~e~l~~~ 182 (541)
.+ ++++++.++
T Consensus 361 ~~------tV~e~l~~a 371 (503)
T 2yhs_A 361 AS------VIFDAIQAA 371 (503)
T ss_dssp HH------HHHHHHHHH
T ss_pred HH------HHHHHHHHH
Confidence 88 888888775
No 101
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.37 E-value=1.9e-08 Score=101.67 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=56.3
Q ss_pred CceeeecccccccccceeecceE------------------------EE-EEEcCCCCCHHHHHHHHhc--C--CCCCCe
Q psy91 78 DYIGFATLPEQVHRKSVKKGFDF------------------------TL-MVVGESGLGKSTLVNSLFL--S--DLYGDR 128 (541)
Q Consensus 78 ~~i~~~~l~~~~~~~~iL~~isl------------------------~i-aIiGpSGsGKSTLL~~L~~--~--~~~G~i 128 (541)
..|.+++|++.|+ +++++|++ .+ ||+||||||||||+++|.+ . +..|.|
T Consensus 36 ~~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TTCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred cccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 4578899999994 56666653 33 9999999999999999944 3 678888
Q ss_pred eecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcccceec
Q psy91 129 KVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 129 ~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~l~~ 181 (541)
.+-+.+|.. ... .....+|++ |...+++.+ ++.+++.+
T Consensus 114 ~vi~~d~~~----~~~----~~~~~~~~v-q~~~~~~~~------~~~~~~~~ 151 (308)
T 1sq5_A 114 ELITTDGFL----HPN----QVLKERGLM-KKKGFPESY------DMHRLVKF 151 (308)
T ss_dssp EEEEGGGGB----CCH----HHHHHHTCT-TCTTSGGGB------CHHHHHHH
T ss_pred EEEecCCcc----CcH----HHHHhCCEe-ecCCCCCCc------cHHHHHHH
Confidence 821115541 111 112235666 666666666 66665544
No 102
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.34 E-value=6.7e-07 Score=88.28 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=55.9
Q ss_pred CCCCeeEeeccchhhhh-------hhhhcc-ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeE
Q psy91 239 PYSDIGFATLPEQVHRK-------SVKKGF-DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKS 310 (541)
Q Consensus 239 ~~~~vG~~~~~~q~~~~-------~vk~g~-~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~ 310 (541)
..+++||..+|.+...+ ..+++. .++++++|.+|+|||||+|+|+.......... .+ .+. ....
T Consensus 8 ~~~~~g~~~l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~---~~---~t~--~~~~ 79 (270)
T 1h65_A 8 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF---QS---EGP--RPVM 79 (270)
T ss_dssp CEECGGGGGSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS---SC---CCS--SCEE
T ss_pred hhhhcchhhccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCC---CC---cce--eeEE
Confidence 35688999999864433 444454 78999999999999999999997663221111 11 111 1111
Q ss_pred EEeeecCeeeeEEEEcCCCCCCCc
Q psy91 311 MDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 311 ~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
..++.+ ..++.|+||||+++..
T Consensus 80 ~~~~~~--~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 80 VSRSRA--GFTLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEEET--TEEEEEEECCCSEETT
T ss_pred EEEeeC--CeEEEEEECCCCCCCc
Confidence 222333 3579999999998753
No 103
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.33 E-value=1.3e-07 Score=96.97 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=52.7
Q ss_pred EEEcCCCCCHHHHHHHHhc--C-CCCCCeeecccC-CccceecccccccccccccEEEEeCCCccccccccccCCCcccc
Q psy91 103 MVVGESGLGKSTLVNSLFL--S-DLYGDRKVPNVN-GSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDY 178 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~-~~~G~i~~~~~~-G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~e~ 178 (541)
+|+||||||||||+|+|++ . +..|+|. .. |. ... ......+++++|+..++++. +++++
T Consensus 219 ~lvG~sG~GKSTLln~L~g~~~~~~~G~I~---~~~G~----g~~----tt~~~~i~~v~q~~~l~dtp------gv~e~ 281 (358)
T 2rcn_A 219 IFAGQSGVGKSSLLNALLGLQNEILTNDVS---NVSGL----GQH----TTTAARLYHFPHGGDVIDSP------GVREF 281 (358)
T ss_dssp EEECCTTSSHHHHHHHHHCCSSCCCCC------------------------CCCEEEECTTSCEEEECH------HHHTC
T ss_pred EEECCCCccHHHHHHHHhccccccccCCcc---ccCCC----Ccc----ceEEEEEEEECCCCEecCcc------cHHHh
Confidence 9999999999999999955 3 5678777 44 44 111 12344689999999888888 88874
Q ss_pred eeccccccchhhHhHhhhHHHHHHHhCCCCc
Q psy91 179 IGFATLPEQVHRKSVKKGFDFTLMVVGESGL 209 (541)
Q Consensus 179 l~~~~~~~~~~~~e~~~~v~~~L~~vGL~g~ 209 (541)
... .....+....+.++++.+|+..+
T Consensus 282 ~l~-----~l~~~e~~~~~~e~l~~~gl~~f 307 (358)
T 2rcn_A 282 GLW-----HLEPEQITQGFVEFHDYLGHCKY 307 (358)
T ss_dssp CCC-----CCCHHHHHHTSGGGGGGTTCSSS
T ss_pred hhc-----CCCHHHHHHHHHHHHHHcCCchh
Confidence 221 22334445556666777776553
No 104
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.32 E-value=4e-08 Score=101.01 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=49.9
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccc--cccccEEEEeCCCc-cccccccccCCCccc
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR--GRQYPWGVVEGSTV-LTPSLIGSLFQTDRD 177 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~--~~~~~~g~V~Q~~~-l~~~lig~~~qtv~e 177 (541)
+|+||||||||||++.|++ .+..|.|. +.|.++.......... ..+..++|++|+.. ++|.+ ++.+
T Consensus 161 ~lvG~nGsGKTTll~~Lag~l~~~~G~V~---l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~------tv~e 231 (359)
T 2og2_A 161 MIVGVNGGGKTTSLGKLAHRLKNEGTKVL---MAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT------VLSK 231 (359)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEE---EECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH------HHHH
T ss_pred EEEcCCCChHHHHHHHHHhhccccCCEEE---EecccccccchhHHHHHHHHhcCeEEEEecccccChhh------hHHH
Confidence 9999999999999999944 45678888 7776321100000011 12346899999988 88888 8888
Q ss_pred ceecc
Q psy91 178 YIGFA 182 (541)
Q Consensus 178 ~l~~~ 182 (541)
++.++
T Consensus 232 ~l~~~ 236 (359)
T 2og2_A 232 AVKRG 236 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 105
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.30 E-value=1.1e-07 Score=91.64 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=41.6
Q ss_pred ceeeecccccccccceeecceE--EE-EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccceecccc----ccccc
Q psy91 79 YIGFATLPEQVHRKSVKKGFDF--TL-MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNTVIEVAG----TKVRG 149 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl--~i-aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~~~~~~~----~~~~~ 149 (541)
.+.++|+...++. +++| .+ +|+|||||||||||++| +..+.+|.|. ++|..+...... .....
T Consensus 9 ~l~l~~~~~~~~~-----~~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~---~~g~~~~~~~~~~~~~~~~~~ 80 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----TFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLH---FRNTTEAGATSGSRDKGLHGK 80 (227)
T ss_dssp EEEEEEETTEEEE-----EECHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC---------------------CGGG
T ss_pred EEEEEeeecccCC-----EEEEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEE---ECCEEcccCCccccccchhhH
Confidence 4677777765543 2222 12 99999999999999999 5568889999 777743111111 01111
Q ss_pred ccccEEEEeCC
Q psy91 150 RQYPWGVVEGS 160 (541)
Q Consensus 150 ~~~~~g~V~Q~ 160 (541)
.+..++||+|+
T Consensus 81 ~~~~i~~v~~~ 91 (227)
T 1qhl_A 81 LKAGVCYSMLD 91 (227)
T ss_dssp BCSSEEEEEEE
T ss_pred hhcCcEEEEEe
Confidence 24568888874
No 106
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.25 E-value=2.2e-07 Score=95.21 Aligned_cols=55 Identities=22% Similarity=0.163 Sum_probs=45.1
Q ss_pred Cceeeeccccccc-ccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 78 DYIGFATLPEQVH-RKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 78 ~~i~~~~l~~~~~-~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
+.++++++++.|+ +..+|+++ |.| +|+|||||||||||++|++ .++.|.+. +.|+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~---~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLA---LIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE---EESC
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE---Eecc
Confidence 3578899999998 67899999 998 9999999999999999944 45556666 5554
No 107
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.24 E-value=5.2e-07 Score=96.02 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=38.9
Q ss_pred ccceeecceEEE-----EEEcCCCCCHHHHHHHH--hcCCCCCCeeecccCCccc
Q psy91 91 RKSVKKGFDFTL-----MVVGESGLGKSTLVNSL--FLSDLYGDRKVPNVNGSNT 138 (541)
Q Consensus 91 ~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L--~~~~~~G~i~~~~~~G~~~ 138 (541)
+..+|+++||+| ||+|||||||||||++| +..+..|+|. ++|+.+
T Consensus 16 ~~~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~---~~g~~~ 67 (483)
T 3euj_A 16 NWNGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN---FRNTTE 67 (483)
T ss_dssp EETTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC---CCCTTS
T ss_pred ccccccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE---ECCEEc
Confidence 356899999988 99999999999999999 4568889999 888743
No 108
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.24 E-value=2e-07 Score=94.94 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=40.3
Q ss_pred eecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 82 FATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 82 ~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
++++++ | ..+++++++.+ +|+|||||||||||++|++ .+..|.|. +.|.
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~---i~~~ 207 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS---IEDT 207 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEE---EESS
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEE---ECCe
Confidence 667777 6 56899999887 9999999999999999944 56678888 6665
No 109
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.23 E-value=9e-08 Score=109.35 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=33.5
Q ss_pred ceeeecccccc-------cccceeecceEEE------EEEcCCCCCHHHHHHHHh
Q psy91 79 YIGFATLPEQV-------HRKSVKKGFDFTL------MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 79 ~i~~~~l~~~~-------~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~ 120 (541)
.+.+++..... +++.|+++|+|++ +|+|||||||||||++++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 56666655443 3467999999976 999999999999999984
No 110
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.20 E-value=8e-08 Score=97.74 Aligned_cols=74 Identities=24% Similarity=0.187 Sum_probs=50.8
Q ss_pred EEE-EEEcCCCCCHHHHHHHHh--cCCCCCCeeecccCCccceecccccccc--cccccEEEEeCCCccccccccccCCC
Q psy91 100 FTL-MVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNGSNTVIEVAGTKVR--GRQYPWGVVEGSTVLTPSLIGSLFQT 174 (541)
Q Consensus 100 l~i-aIiGpSGsGKSTLL~~L~--~~~~~G~i~~~~~~G~~~~~~~~~~~~~--~~~~~~g~V~Q~~~l~~~lig~~~qt 174 (541)
..+ +|+||||||||||+++|+ ..+..|.|. +.|.++.......... ..+..+.+++|...+.|.+ +
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~---l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~------~ 199 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV---IAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA------V 199 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE---EEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH------H
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE---EEeecccccchHHHHHHHHHHcCceEEeccccCCHHH------H
Confidence 455 999999999999999994 356678888 6666321110001111 1223466999999999988 8
Q ss_pred cccceecc
Q psy91 175 DRDYIGFA 182 (541)
Q Consensus 175 v~e~l~~~ 182 (541)
+++++.++
T Consensus 200 v~e~l~~~ 207 (328)
T 3e70_C 200 AYDAIQHA 207 (328)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888765
No 111
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.19 E-value=1.7e-06 Score=97.87 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=33.1
Q ss_pred Cceeeecccccc-----cccceeecceEE----E-EEEcCCCCCHHHHHHHHhc
Q psy91 78 DYIGFATLPEQV-----HRKSVKKGFDFT----L-MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 78 ~~i~~~~l~~~~-----~~~~iL~~isl~----i-aIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.+++..... +++.++++++++ + +|+||||||||||||+|++
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEeccccEEEccCCCceeeecccccCCCcEEEEECCCCCChHHHHHHHHH
Confidence 345665543332 456789999985 4 9999999999999999955
No 112
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.15 E-value=9.4e-08 Score=103.66 Aligned_cols=75 Identities=13% Similarity=-0.001 Sum_probs=51.3
Q ss_pred eeeecccccccccceeecceE-EE------EEEcCCCCCHHHHHHH--Hhc--CCCCCCeeecccCCccceecccccccc
Q psy91 80 IGFATLPEQVHRKSVKKGFDF-TL------MVVGESGLGKSTLVNS--LFL--SDLYGDRKVPNVNGSNTVIEVAGTKVR 148 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl-~i------aIiGpSGsGKSTLL~~--L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~ 148 (541)
+..+++.+..++..+|++|++ .| +|+||||||||||+++ +.+ .+..|.|+ ++|+. .. ....
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~---v~g~~----~~-~~~~ 84 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF---VTFEE----TP-QDII 84 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE---EESSS----CH-HHHH
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE---EEEeC----CH-HHHH
Confidence 344445555556789999999 77 9999999999999999 433 34678999 77772 11 1112
Q ss_pred cccccEEEEeCCCc
Q psy91 149 GRQYPWGVVEGSTV 162 (541)
Q Consensus 149 ~~~~~~g~V~Q~~~ 162 (541)
..++.+||++|+..
T Consensus 85 ~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 85 KNARSFGWDLAKLV 98 (525)
T ss_dssp HHHGGGTCCHHHHH
T ss_pred HHHHHcCCChHHhh
Confidence 23346788888754
No 113
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.11 E-value=1.2e-07 Score=99.62 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=42.7
Q ss_pred ceeeecccccccccceeecc---eEE-EEEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 79 YIGFATLPEQVHRKSVKKGF---DFT-LMVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~i---sl~-iaIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
.+.++++++.|+...+|+++ ... ++|+|||||||||||++|++ .+..|.|. +.|.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~---~~ed 203 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL---TVED 203 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE---EEES
T ss_pred CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE---Eecc
Confidence 56888999998877777776 123 39999999999999999943 45678888 5555
No 114
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.04 E-value=5.1e-07 Score=88.89 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=33.9
Q ss_pred eeeecccccccccceeecceE---EE-EEEcCCCCCHHHHHHHHhc--CCC-CCCee
Q psy91 80 IGFATLPEQVHRKSVKKGFDF---TL-MVVGESGLGKSTLVNSLFL--SDL-YGDRK 129 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl---~i-aIiGpSGsGKSTLL~~L~~--~~~-~G~i~ 129 (541)
+.+++|++. .+|+++++ .+ +|+|||||||||||++|++ .+. .|.|.
T Consensus 6 ~~l~~l~~~----~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~ 58 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 (261)
T ss_dssp CCGGGSSCC----THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred CChHHCCCH----HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence 456666653 57888873 12 9999999999999999954 344 67776
No 115
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.98 E-value=1.3e-07 Score=93.92 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=53.9
Q ss_pred cccccceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCC-c
Q psy91 88 QVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST-V 162 (541)
Q Consensus 88 ~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~-~ 162 (541)
.++...+++++++.+ +|+||||||||||+++|++....|.+. ++|..+.. .......+.++++||.. .
T Consensus 29 ~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~---i~g~~l~~----~~~~~~~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 29 PVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFIS---VKGPELLN----MYVGESERAVRQVFQRAKN 101 (274)
T ss_dssp HHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE---EETTTTCS----STTHHHHHHHHHHHHHHHH
T ss_pred HhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEE---EEcHHHHh----hhhhHHHHHHHHHHHHHHh
Confidence 445566888888876 999999999999999997665567777 66763321 11111223466777764 4
Q ss_pred cccccccccCCCcccceec
Q psy91 163 LTPSLIGSLFQTDRDYIGF 181 (541)
Q Consensus 163 l~~~lig~~~qtv~e~l~~ 181 (541)
..|.+ ++.+++.+
T Consensus 102 ~~p~i------~~~Deid~ 114 (274)
T 2x8a_A 102 SAPCV------IFFDEVDA 114 (274)
T ss_dssp TCSEE------EEEETCTT
T ss_pred cCCCe------Eeeehhhh
Confidence 55666 66666654
No 116
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.98 E-value=2.1e-06 Score=80.27 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=34.4
Q ss_pred EEEcCCCCCHHHHHHHHhcC-CCCCCeeecccCCccceecccccccccccccEEEEeCCC
Q psy91 103 MVVGESGLGKSTLVNSLFLS-DLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGST 161 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~-~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~ 161 (541)
+|+||||||||||+++|++. ..+| |. ++|.. .. .....++.+||++|+.
T Consensus 5 ~i~G~nG~GKTTll~~l~g~~~~~G-i~---~~g~~----~~--~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 5 FLTGPPGVGKTTLIHKASEVLKSSG-VP---VDGFY----TE--EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp EEESCCSSCHHHHHHHHHHHHHHTT-CC---CEEEE----CC--EEETTSSEEEEEEEET
T ss_pred EEECCCCChHHHHHHHHHhhcccCC-EE---EcCEe----cc--hhHhhhceEEEEEEec
Confidence 89999999999999999432 1678 87 66652 11 1223456789988864
No 117
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.97 E-value=7.5e-07 Score=87.05 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=27.5
Q ss_pred Cceeeecc-cccc-cccceeecceEEE---------EEEcCCCCCHHHHHHHHhc
Q psy91 78 DYIGFATL-PEQV-HRKSVKKGFDFTL---------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 78 ~~i~~~~l-~~~~-~~~~iL~~isl~i---------aIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.++|+ ++.| ++..+|+++||+| +|+|+|||||||+.++|+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 46889999 9999 7788999999877 8999999999999999954
No 118
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.93 E-value=1.5e-06 Score=89.57 Aligned_cols=45 Identities=84% Similarity=1.314 Sum_probs=37.1
Q ss_pred CCceeeecccccccccceeecceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 77 RDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~~~iL~~isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.++|++.+++.+|+.+.+++++++.|+|+|+||+|||||++.|++
T Consensus 15 ~~~v~~~~l~~~~~~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ------CCHHHHHHTHHHHHCCEECEEECCCTTSCHHHHHHHHTT
T ss_pred CceEEeccchHHhCCeeecCCCCEEEEEEcCCCCCHHHHHHHHhC
Confidence 457899999999999999999999999999999999999999854
No 119
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.93 E-value=3.3e-06 Score=79.65 Aligned_cols=71 Identities=10% Similarity=0.004 Sum_probs=43.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCccceecccccccccccccEEEEeCCCccc--cccccccCCCcccce
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLT--PSLIGSLFQTDRDYI 179 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~--~~lig~~~qtv~e~l 179 (541)
+||+||||||||||+++|++. +.. .++||+|+..++ ..+ ++.++.
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~----------~~~-----------------~i~~v~~d~~~~~~~~~------~~~~~~ 55 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALART----------LGE-----------------RVALLPMDHYYKDLGHL------PLEERL 55 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHH----------HGG-----------------GEEEEEGGGCBCCCTTS------CHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH----------hCC-----------------CeEEEecCccccCcccc------cHHHhc
Confidence 499999999999999999652 100 468888887665 345 666654
Q ss_pred eccccccchhhHhHhhhHHHHHHHhCCCC
Q psy91 180 GFATLPEQVHRKSVKKGFDFTLMVVGESG 208 (541)
Q Consensus 180 ~~~~~~~~~~~~e~~~~v~~~L~~vGL~g 208 (541)
.+. + ..+.....+.+..+++.+++..
T Consensus 56 ~~~-~--~~~~~~~~~~~~~~l~~~~~~~ 81 (211)
T 3asz_A 56 RVN-Y--DHPDAFDLALYLEHAQALLRGL 81 (211)
T ss_dssp HSC-T--TSGGGBCHHHHHHHHHHHHTTC
T ss_pred CCC-C--CChhhhhHHHHHHHHHHHHcCC
Confidence 443 1 1111122334555666666544
No 120
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.92 E-value=2.1e-06 Score=81.76 Aligned_cols=70 Identities=26% Similarity=0.209 Sum_probs=40.1
Q ss_pred EEE-EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCccceecccccccccccccEEEEeCCCccccccccccCCCcc
Q psy91 100 FTL-MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDR 176 (541)
Q Consensus 100 l~i-aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv~ 176 (541)
.++ +|+||||||||||+++|++ .+.+|... ..|..+....... .....+++++|...+++ +++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~---~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~-------~~~~ 91 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG---LNGSVIWIDTENT---FRPERIREIAQNRGLDP-------DEVL 91 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSCEEEEEESSSC---CCHHHHHHHHHHTTSCH-------HHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCC---CCCEEEEEECCCC---CCHHHHHHHHHHcCCCH-------HHHh
Confidence 345 9999999999999999954 44443332 2233222111110 11123456666544433 3788
Q ss_pred cceecc
Q psy91 177 DYIGFA 182 (541)
Q Consensus 177 e~l~~~ 182 (541)
+|+.+.
T Consensus 92 ~~~~~~ 97 (231)
T 4a74_A 92 KHIYVA 97 (231)
T ss_dssp HTEEEE
T ss_pred hcEEEE
Confidence 888876
No 121
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.91 E-value=1.5e-06 Score=81.61 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=27.7
Q ss_pred ceeeecccccccccceeecceE----EEEEEcCCCCCHHHHHHHHhcC
Q psy91 79 YIGFATLPEQVHRKSVKKGFDF----TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl----~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.++|+++.|+. .+|+++.+ .++|+|+||||||||++.|++.
T Consensus 3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3688999999973 67777432 2399999999999999999654
No 122
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.86 E-value=1.3e-07 Score=93.70 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred eeecccccccccceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
.++++.+.|+...+++++++.+ +|+||||||||||+++|++....|.+. ++|.
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~---~~~~ 107 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT---ASGS 107 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEE---EEHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEE---ecHH
Confidence 4567777787778899988876 999999999999999996655567777 5555
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.85 E-value=7.7e-06 Score=75.71 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=28.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
++|+||||||||||+++|++.+..|.|. ++|.
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~~~g~i~---i~~d 43 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLPGVPKVH---FHSD 43 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCSSSCEEE---ECTT
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCeEE---Eccc
Confidence 3899999999999999998887788888 7776
No 124
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.84 E-value=2.4e-06 Score=82.06 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=15.9
Q ss_pred ceeecceEEE------EEEcCCCCCHHHHHHHHh-cCC
Q psy91 93 SVKKGFDFTL------MVVGESGLGKSTLVNSLF-LSD 123 (541)
Q Consensus 93 ~iL~~isl~i------aIiGpSGsGKSTLL~~L~-~~~ 123 (541)
+..+++||++ +|+||||||||||+++|+ +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4567888876 999999999999999998 753
No 125
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.84 E-value=1.6e-07 Score=91.62 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=42.5
Q ss_pred eeecccccccccceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
.++++.+.|+...+++++++.+ +|+||||||||||+++|++....|.+. ++|.
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~---~~~~ 83 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT---ASGS 83 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEE---EEHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE---eeHH
Confidence 5667777787777888888876 999999999999999996655567777 5555
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.81 E-value=1.4e-06 Score=88.15 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=45.2
Q ss_pred EEEcCCCCCHHHHHHHHhcC----------CCCCCeeecccCCccceeccccc------------ccccccccEEEE---
Q psy91 103 MVVGESGLGKSTLVNSLFLS----------DLYGDRKVPNVNGSNTVIEVAGT------------KVRGRQYPWGVV--- 157 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~----------~~~G~i~~~~~~G~~~~~~~~~~------------~~~~~~~~~g~V--- 157 (541)
+|+|+|||||||||+.|++. ++.|+|. ++|..+.. .... ....+...++++
T Consensus 8 ~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~---idg~~l~~-~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 8 LLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS---VDDQLIGD-RATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCC---EEEEEECT-TSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccC---ccHHHHhC-CCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 89999999999999999543 4778888 65552211 0000 001223345666
Q ss_pred eCCCccccccccccCCCcccceecc
Q psy91 158 EGSTVLTPSLIGSLFQTDRDYIGFA 182 (541)
Q Consensus 158 ~Q~~~l~~~lig~~~qtv~e~l~~~ 182 (541)
+|+..+++.. ++.|++.++
T Consensus 84 ~q~~~~~~~~------~v~E~~~l~ 102 (318)
T 1nij_A 84 LDKGNIQFDR------LVIECTGMA 102 (318)
T ss_dssp HHHTSCCCSE------EEEEEETTC
T ss_pred HhcCCCCCCE------EEEeCCCCC
Confidence 5766666667 888888876
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.80 E-value=2.1e-05 Score=83.66 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=38.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
-.+++.++|.+|+|||||+|.|...+.......+ .+........++.+| .++.|+||||+++.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~--------gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA--------GTTRDAVDTSFTYNQ--QEFVIVDTAGMRKK 256 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--------------CTTSEEEEETT--EEEEETTGGGTTTB
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCC--------CeEEEEEEEEEEECC--ceEEEEECCCCCcC
Confidence 3578999999999999999999865421111111 111111122233344 37999999998764
No 128
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.79 E-value=2e-05 Score=72.36 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=16.8
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||||++|
T Consensus 30 ~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 30 AIVGANGSGKSNIGDAI 46 (182)
T ss_dssp EEEECTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 99999999999999999
No 129
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.79 E-value=1.1e-06 Score=81.56 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=24.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
+|+||||||||||+++|++ +..|.++ ++|.
T Consensus 6 ~l~G~~GaGKSTl~~~L~~-~~~g~~~---i~~d 35 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRLAA-QLDNSAY---IEGD 35 (189)
T ss_dssp EEECSTTSSHHHHHHHHHH-HSSSEEE---EEHH
T ss_pred EEECCCCCcHHHHHHHHhc-ccCCeEE---Eccc
Confidence 8999999999999999975 4556677 6555
No 130
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.68 E-value=7.1e-05 Score=70.70 Aligned_cols=65 Identities=25% Similarity=0.344 Sum_probs=39.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+.++++|.+|+|||||+|.|........ .+.....+..+. ...+. ..-...+.|+||||+++..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~-----~~~~~~~t~~~~--~~~~~-~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAF-----ASKTPGRTQHIN--YFSVG-PAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSC-----TTCCCCSCCCEE--EEEES-CTTSCSEEEEECCCCCSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccee-----ecCCCCcccceE--EEEec-CCCCCcEEEEcCCCCCccc
Confidence 46899999999999999999987652111 111111122221 11111 1114679999999998763
No 131
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.68 E-value=3.4e-06 Score=85.96 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=32.2
Q ss_pred eeeecccccccccceeecceEE-------------EEEEcCCCCCHHHHHHHHhc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFT-------------LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~-------------iaIiGpSGsGKSTLL~~L~~ 121 (541)
+..++++..||+..+++++++. ++|+||||||||||+++|++
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4556677777777777766643 28999999999999999943
No 132
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.67 E-value=1.8e-06 Score=89.10 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=40.2
Q ss_pred EEEcCCCCCHHHHHHHHhc--CCCC----CCeeecc-cCCccceecccccccccccccEEEEeCCCccccccccccCCCc
Q psy91 103 MVVGESGLGKSTLVNSLFL--SDLY----GDRKVPN-VNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTD 175 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~--~~~~----G~i~~~~-~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~qtv 175 (541)
+|+||||||||||+++|++ .+.. |.+++.+ ..|. ... ...... ..+++++|+..++ .. ++
T Consensus 174 ~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~----~~~-~~~~~~-~~I~~~~q~~~~~-~~------t~ 240 (365)
T 1lw7_A 174 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD----EQA-MQYSDY-PQMALGHQRYIDY-AV------RH 240 (365)
T ss_dssp EEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC----TTS-SCTTTH-HHHHHHHHHHHHH-HH------HH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC----ccc-CChhHH-HHHHHHHHHHHHH-HH------hc
Confidence 9999999999999999944 4555 6666110 0122 110 111112 3467777765433 34 77
Q ss_pred ccceecc
Q psy91 176 RDYIGFA 182 (541)
Q Consensus 176 ~e~l~~~ 182 (541)
.+|+.+.
T Consensus 241 ~~nl~~~ 247 (365)
T 1lw7_A 241 SHKIAFI 247 (365)
T ss_dssp CSSEEEE
T ss_pred cCCEEEE
Confidence 8888776
No 133
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.67 E-value=1.7e-06 Score=83.60 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=28.4
Q ss_pred eeeEEEEcCCCCCCC-ccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 319 KLRLTVVDTPGFGDS-INSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~-~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
+++++++|||+.+.+ .... ......+.+++....+.+.++++.+|..+..
T Consensus 135 ~p~~lilDep~~~ld~~~d~-------~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEE-------RKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSG-------GGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred CCCEEEEccHHHHHhhcCCH-------HHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 578899999965432 1100 0111234555555555688999999987654
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.65 E-value=1.5e-06 Score=81.57 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=24.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
++|+||||||||||+++|++.. |.+. ++|.
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~--g~~~---i~~d 61 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADET--GLEF---AEAD 61 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH--CCEE---EEGG
T ss_pred EEEECCCCCCHHHHHHHHHHhh--CCeE---Eccc
Confidence 3999999999999999995533 7777 6666
No 135
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.60 E-value=2.2e-05 Score=77.10 Aligned_cols=83 Identities=20% Similarity=0.170 Sum_probs=52.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC---------
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS--------- 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~--------- 333 (541)
++++++|.+|+|||||+|+|.......... ..+ . |.. ...+. +..++.|+||||+++.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~---~~g-~--T~~--~~~~~-----~~~~~~l~DtpG~~~~~~~~~~~~~ 166 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA---QPG-I--TKG--IQWFS-----LENGVKILDTPGILYKNIFSEDLAA 166 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------------CC--SCEEE-----CTTSCEEESSCEECCCCCCSHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC---CCC-C--ccc--eEEEE-----eCCCEEEEECCCcccCcCCCChhhc
Confidence 689999999999999999999765321111 111 1 111 11111 1357899999999875
Q ss_pred ----ccchhhhhhhhhhhhhhhhhhhhhh
Q psy91 334 ----INSEESWRACCSYIDDQFRQYFNDE 358 (541)
Q Consensus 334 ----~~~~~~~~~i~~yI~~~~~~~l~~e 358 (541)
.+....+..+.+|+..++.++|.+.
T Consensus 167 ~~~~~d~~~~~~~~~~~l~~~~~~~l~~~ 195 (262)
T 3cnl_A 167 KLLLVGSLPVERIEDQRIFERAFEIFARS 195 (262)
T ss_dssp HHHHTTSSCGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3445566677777777776666554
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.59 E-value=3.6e-06 Score=77.30 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=23.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc--CCC---CCCeeecccCCcc
Q psy91 102 LMVVGESGLGKSTLVNSLFL--SDL---YGDRKVPNVNGSN 137 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~--~~~---~G~i~~~~~~G~~ 137 (541)
++|+|+||||||||+++|++ .+. .|.|. ++|..
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~---~dg~~ 42 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVK---RHAHG 42 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE---C----
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEE---EcCcc
Confidence 38999999999999999933 333 68898 77763
No 137
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.59 E-value=2.9e-05 Score=71.93 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=18.1
Q ss_pred EEEcCCCCCHHHHHHHHhcC
Q psy91 103 MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~ 122 (541)
+|+||||||||||+++|++.
T Consensus 5 ~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 5 VISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEESSSSSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 89999999999999999543
No 138
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.57 E-value=7.9e-05 Score=69.23 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=38.7
Q ss_pred CeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee
Q psy91 242 DIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321 (541)
Q Consensus 242 ~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~ 321 (541)
+-|++..+++...++....-.+++.++|.+|+|||||+|.|...... ... ..+.........+.-++....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~ 78 (199)
T 2p5s_A 8 HHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENI--------SATLGVDFQMKTLIVDGERTV 78 (199)
T ss_dssp --------------------CEEEEEESSTTSSHHHHHHHHHHCCCC-------------------CEEEEEEETTEEEE
T ss_pred ccccCCcccccccCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCC-ccC--------CCCccceeEEEEEEECCEEEE
Confidence 45677777766666766777899999999999999999999866521 111 112222222222333455788
Q ss_pred EEEEcCCCCC
Q psy91 322 LTVVDTPGFG 331 (541)
Q Consensus 322 L~I~DePg~G 331 (541)
+.|+|+||..
T Consensus 79 l~i~Dt~G~~ 88 (199)
T 2p5s_A 79 LQLWDTAGQE 88 (199)
T ss_dssp EEEEECTTCT
T ss_pred EEEEECCCCc
Confidence 9999999964
No 139
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.55 E-value=6.4e-05 Score=77.56 Aligned_cols=124 Identities=15% Similarity=0.155 Sum_probs=62.4
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhh
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRA 342 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~ 342 (541)
.+++++|.+|+|||||+|+|+.............+.....|.... .+.+ .-.+.++||||+++...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~-----~~~~~liDtPG~~~~~~------- 226 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPL-----DEESSLYDTPGIINHHQ------- 226 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEES-----SSSCEEEECCCBCCTTS-------
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEe-----cCCeEEEeCCCcCcHHH-------
Confidence 478999999999999999998764211011111122222222222 1221 22389999999987532
Q ss_pred hhhhhhhhhhhhhhhhcccCcc-eeecc-ccc---hhhhh-c-ccceeEEEcCCCCCCCCCcHHH
Q psy91 343 CCSYIDDQFRQYFNDENRQGKT-TTIEK-KSM---DIEER-G-VKLRLTVVDTPGFGDSINSEES 400 (541)
Q Consensus 343 i~~yI~~~~~~~l~~e~~~~rt-~~i~~-~~~---di~~~-~-l~~rvnvIpvi~k~D~lt~~e~ 400 (541)
+.+++......++......... ..+.. +.. ++... - -..++.++.+++|.|.+..++.
T Consensus 227 ~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 227 MAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp GGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEH
T ss_pred HHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccH
Confidence 2233333333332222222211 11111 010 00000 0 1235678889999999988776
No 140
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.54 E-value=8.2e-05 Score=72.27 Aligned_cols=65 Identities=28% Similarity=0.234 Sum_probs=38.8
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.-.+++.++|.+|+|||||+|+|...........+ .+ .|..... ..+..+ ...+.|+||||+.+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~---~~--~T~~~~~--~~~~~~--~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGA---TS--VTRACTT--GSRRWD--KCHVEVVDTPDIFSS 83 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------CCSCEE--EEEEET--TEEEEEEECCSCSST
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCC---CC--ccccEEE--EEEEEC--CcEEEEEECCCCCCC
Confidence 34679999999999999999999877643221110 01 1111111 111222 467899999999764
No 141
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.53 E-value=2.9e-05 Score=72.79 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+||||||||||+++|++
T Consensus 7 i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 38999999999999999954
No 142
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.51 E-value=9.7e-05 Score=71.05 Aligned_cols=65 Identities=28% Similarity=0.391 Sum_probs=38.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
-.+++.++|.+|+|||||+|+|.......... ....+........+.-+ ..++.|+||||+++..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~-------~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGT-------AAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTE 92 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------------CCSCEEEEEEET--TEEEEEEECCSCC---
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCC-------CCCceeeeEEEEEEEeC--CceEEEEECCCccCCC
Confidence 35789999999999999999998766422111 11111111111222222 3578999999998764
No 143
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.50 E-value=5.2e-05 Score=87.89 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCceeeec-----ccccc-cccceeecceE------------EE-EEEcCCCCCHHHHHHHH
Q psy91 77 RDYIGFAT-----LPEQV-HRKSVKKGFDF------------TL-MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 77 ~~~i~~~~-----l~~~~-~~~~iL~~isl------------~i-aIiGpSGsGKSTLL~~L 119 (541)
.+.|.+++ |++.| ++..++++++| .+ +|+|||||||||||++|
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH
Confidence 35689999 99999 66789999987 35 99999999999999999
No 144
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.48 E-value=7.4e-05 Score=77.11 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=63.3
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhh
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRA 342 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~ 342 (541)
.+++++|.+|+|||||+|+|+........ ....+.....|..... +.+ ...+.++||||+++...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~-~~~~~~~~gtT~~~~~--~~~-----~~~~~liDtPG~~~~~~------- 227 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGN-VITTSYFPGTTLDMIE--IPL-----ESGATLYDTPGIINHHQ------- 227 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTC-CCEEEECTTSSCEEEE--EEC-----STTCEEEECCSCCCCSS-------
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcc-ceeecCCCCeEEeeEE--EEe-----CCCeEEEeCCCcCcHHH-------
Confidence 47999999999999999999876211111 1111212222333222 221 23489999999986521
Q ss_pred hhhhhhhhhhhhhhhhcccCcc-eeecc-ccc---hhhh-hc-ccceeEEEcCCCCCCCCCcHHH
Q psy91 343 CCSYIDDQFRQYFNDENRQGKT-TTIEK-KSM---DIEE-RG-VKLRLTVVDTPGFGDSINSEES 400 (541)
Q Consensus 343 i~~yI~~~~~~~l~~e~~~~rt-~~i~~-~~~---di~~-~~-l~~rvnvIpvi~k~D~lt~~e~ 400 (541)
+..++..+...++....+.... ..+.. +.+ ++.. .- -..++.++.+++|.|.+..++.
T Consensus 228 ~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 228 MAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp GGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEG
T ss_pred HHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccH
Confidence 2234444444433221222211 11111 010 0000 00 1235678889999999987765
No 145
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.46 E-value=2.1e-05 Score=74.26 Aligned_cols=20 Identities=45% Similarity=0.594 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+||||||||||+++|++
T Consensus 25 v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999999955
No 146
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.45 E-value=1e-05 Score=75.84 Aligned_cols=26 Identities=42% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEcCCCCCHHHHHHHHhcC-CCCCCe
Q psy91 103 MVVGESGLGKSTLVNSLFLS-DLYGDR 128 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~-~~~G~i 128 (541)
+|+||||||||||+++|++. ...|.+
T Consensus 29 ~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 29 WVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 99999999999999999432 245666
No 147
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.41 E-value=0.00018 Score=64.15 Aligned_cols=61 Identities=23% Similarity=0.332 Sum_probs=39.7
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... ..... .++.+......+.-++...++.++||||.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 64 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYK--------KTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSS--------CCCSSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCC--------CceEEEEEEEEEEECCEEEEEEEEcCCCc
Confidence 357899999999999999999987542 11111 11111112222333555789999999994
No 148
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.37 E-value=6.6e-05 Score=69.11 Aligned_cols=19 Identities=26% Similarity=0.683 Sum_probs=17.8
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||+++|++
T Consensus 9 ~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 8999999999999999954
No 149
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=6.7e-05 Score=70.15 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=17.6
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
..+++||||++ +|+||+||||||+.+.|+.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999987 9999999999999999953
No 150
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.36 E-value=0.00027 Score=63.78 Aligned_cols=61 Identities=30% Similarity=0.426 Sum_probs=40.5
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|...... ... ..+.........+.-++....+.++|+||.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 68 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSY--------ITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CC--------TTTBSEEEEEEEEEETTEEEEEEEEEETTG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-Ccc--------CCCceeEEEEEEEEECCEEEEEEEEcCCCc
Confidence 3578999999999999999999875522 111 112222223333444666789999999993
No 151
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.34 E-value=0.00031 Score=62.68 Aligned_cols=60 Identities=15% Similarity=0.302 Sum_probs=39.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|........ . ..+.........+.-++...++.++||||.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 65 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN-I--------NPTIGASFMTKTVQYQNELHKFLIWDTAGL 65 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT-C--------CCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC-C--------CCceeEEEEEEEEEECCeEEEEEEEcCCCc
Confidence 47899999999999999999987652211 1 111111222222333455788999999997
No 152
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.34 E-value=0.0003 Score=62.67 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=39.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... ... .+.........+.-++...++.++|+||.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 62 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKE--------PTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCC--------CCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCC--------CccceeEEEEEEEECCEEEEEEEEECCCC
Confidence 3689999999999999999998765221 111 11222222222233455788999999994
No 153
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.33 E-value=0.00029 Score=63.45 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=40.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|...... ... ..++........+.-++....+.++|+||.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD-TQL--------FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC-C------------CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCC--------CCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3578999999999999999999865421 111 112222222233344566789999999994
No 154
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.32 E-value=0.00028 Score=63.02 Aligned_cols=61 Identities=23% Similarity=0.403 Sum_probs=39.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .....+ ++........+.-+|....+.++|+||..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~--------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKF-NDKHIT--------TLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCC--------CCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCC--------ccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 57899999999999999999986652 221111 11111122223335667889999999953
No 155
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.31 E-value=5.7e-05 Score=78.05 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=35.4
Q ss_pred eeecce---EE-EEEEcCCCCCHHHHHHHHhc--CCC-CCCeeecccCCccceecccccccccccccEEEEeC
Q psy91 94 VKKGFD---FT-LMVVGESGLGKSTLVNSLFL--SDL-YGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEG 159 (541)
Q Consensus 94 iL~~is---l~-iaIiGpSGsGKSTLL~~L~~--~~~-~G~i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q 159 (541)
+|++++ .. ++|+|||||||||||++|++ .+. .|.|. +.|.. ... ..+..+++|+|
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~---~~e~~----~e~----~~~~~~~~v~Q 188 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII---TIEDP----IEY----VFKHKKSIVNQ 188 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE---EEESS----CCS----CCCCSSSEEEE
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE---Eeccc----Hhh----hhccCceEEEe
Confidence 555544 22 39999999999999999954 333 57776 43331 111 22345688888
No 156
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.30 E-value=0.00021 Score=65.66 Aligned_cols=63 Identities=32% Similarity=0.415 Sum_probs=37.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINS 336 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~ 336 (541)
.++++++|.+|+|||||+|.|........ .+.....+..+... .+ +.++.++||||+++....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~t~~~~~~--~~-----~~~~~l~Dt~G~~~~~~~ 85 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLAR-----TSSKPGKTQTLNFY--II-----NDELHFVDVPGYGFAKVS 85 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC------------------CCEEEE--EE-----TTTEEEEECCCBCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccc-----cCCCCCceeeEEEE--EE-----CCcEEEEECCCCCccccC
Confidence 57899999999999999999987642211 11111112222211 11 237999999999886543
No 157
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.30 E-value=0.0002 Score=69.96 Aligned_cols=63 Identities=27% Similarity=0.462 Sum_probs=40.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.++++++|.+|+|||||+|+|+......... . ...+ +......+..+| ..+.|+||||+++..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~---~---~~~t--~~~~~~~~~~~~--~~l~liDTpG~~~~~ 98 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP---F---QAEG--LRPVMVSRTMGG--FTINIIDTPGLVEAG 98 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCS---S---CC-C--CCCEEEEEEETT--EEEEEEECCCSEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCC---C---CCcc--eeeEEEEEEECC--eeEEEEECCCCCCcc
Confidence 5899999999999999999998765311111 0 1111 111122222333 489999999998653
No 158
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.28 E-value=0.00027 Score=63.09 Aligned_cols=60 Identities=27% Similarity=0.400 Sum_probs=38.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|...... ... ..++........+.-+|...++.++|+||.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 62 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSF--------ITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C---------------CCEEEEEEESSSCEEEEEEECCTTG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCC--------CCccceeEEEEEEEECCEEEEEEEEeCCCC
Confidence 478999999999999999999866521 111 112222222223334566788999999994
No 159
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.26 E-value=0.00038 Score=62.63 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=39.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|...... ... ..++.+......+.-++....+.++||||.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 73 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFD-NTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSC--------CCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCC--------CCceeeEEEEEEEEECCeEEEEEEEECCCc
Confidence 378999999999999999999865421 111 112222222223334555688999999994
No 160
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.26 E-value=0.0018 Score=58.64 Aligned_cols=61 Identities=30% Similarity=0.358 Sum_probs=40.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.++++++|.+|+|||||+|.|...... ....+. ....+ ...+.-++....+.++|+||..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPT------IEDSY---LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTT------CCEEE---EEEEEETTEEEEEEEEECCSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCC------cccee---EEEEEeCCcEEEEEEEECCCch
Confidence 3578999999999999999999865422 111111 11111 2223345667889999999953
No 161
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.26 E-value=4.2e-05 Score=82.28 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=31.8
Q ss_pred ceeecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCeeecccCCc
Q psy91 93 SVKKGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRKVPNVNGS 136 (541)
Q Consensus 93 ~iL~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~~~~~~G~ 136 (541)
.+++++++.+ +|+|||||||||||++|++ .+..|.|. +.|.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giit---ied~ 296 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVS---IEDT 296 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE---EESS
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEE---EcCc
Confidence 4677777765 9999999999999999944 45567777 5554
No 162
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.26 E-value=0.00053 Score=68.82 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=37.2
Q ss_pred eEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
+.++|.+|+|||||+|.|.+...... +.....|.. ........ +...++.++||||.++..
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~~~i~------s~~~~tT~~--~~~~~~~~-~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTKVSII------SPKAGTTRM--RVLGVKNI-PNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSCCSCC------CSSSCCCCS--CEEEEEEE-TTTEEEEEEECCCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCcccc------CCCCCceee--EEEEEEec-CCCCeEEEEECcCCCccc
Confidence 67899999999999999987663211 111111111 11111111 224679999999998754
No 163
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.25 E-value=1.8e-05 Score=79.98 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|||+||||||||||+++|.+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 49999999999999999943
No 164
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.24 E-value=0.00046 Score=62.34 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=40.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|.......... ..++.+......+.-+|....+.++|+||..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF--------ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCC--------CCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCc--------CCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5789999999999999999998765322111 1122222222223345667899999999953
No 165
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.23 E-value=0.00046 Score=63.41 Aligned_cols=63 Identities=24% Similarity=0.431 Sum_probs=41.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
-.++++++|.+|+|||||+|.|........ . ..++.+......+.-++...++.|+||||...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHD-S--------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSS-C--------CCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-C--------CCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 357899999999999999999987652211 1 11222222222233345578899999999743
No 166
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.22 E-value=0.00052 Score=62.43 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=40.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... .. ..++........+.-++-...+.++|+||.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 69 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKD-DS--------NHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCT-TC--------CCCSEEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CC--------CCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 5789999999999999999998665221 11 122233333333344555689999999995
No 167
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.22 E-value=0.00047 Score=63.08 Aligned_cols=61 Identities=33% Similarity=0.427 Sum_probs=38.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
.+.++++|.+|+|||||+|.|........ +.....+..+.... ...++.++||||+++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~t~~~~~~~-------~~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFV------SKTPGKTRSINFYL-------VNSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCC------CSSCCCCCCEEEEE-------ETTTEEEEECCCBSSSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccc------cCCCCCccCeEEEE-------ECCcEEEEECCCCccccC
Confidence 46899999999999999999987652111 11111112111111 134688999999987643
No 168
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.22 E-value=0.00048 Score=61.28 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|....... ... .+.........+.-++...++.++|+||..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHE-FQE--------STIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCC--------CCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC-CCC--------CccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5789999999999999999998655221 111 111112222222334457889999999953
No 169
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.20 E-value=0.00047 Score=62.00 Aligned_cols=60 Identities=30% Similarity=0.457 Sum_probs=39.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|........ .. .+.........+.-++....+.++||||.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD-CP--------HTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSS-CT--------TSCCCCEEEEEEEETTEEEEEEEEECTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CC--------CccceEEEEEEEEECCeEEEEEEEECCCC
Confidence 57899999999999999999987653211 11 11111111122233455788999999994
No 170
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.19 E-value=0.00056 Score=63.36 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=40.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|....... ... .++.+......+.-++...++.|+||||..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFV--------STVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCC--------CCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcC--------CccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 4789999999999999999998765221 111 122222222233345567899999999973
No 171
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.19 E-value=0.00034 Score=68.02 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=40.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSIN 335 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~ 335 (541)
.+++.++|.+|+|||||+|+|...........+. + .+.......+ .-+ ..++.|+||||+.+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~---~--~t~~~~~~~~--~~~--~~~i~iiDTpG~~~~~~ 86 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ---T--LTKTCSKSQG--SWG--NREIVIIDTPDMFSWKD 86 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC---C--CCCSCEEEEE--EET--TEEEEEEECCGGGGSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC---c--eeeeeEEEEE--EeC--CCEEEEEECcCCCCCCC
Confidence 5789999999999999999998765332211110 0 1111111111 122 35799999999986543
No 172
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.18 E-value=0.00048 Score=64.35 Aligned_cols=61 Identities=30% Similarity=0.483 Sum_probs=41.7
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... ... ...++.+......+.-+|....+.|+||||.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~--------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPG--------QGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTT--------CCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCC--------CCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 457899999999999999999987542 111 1223333333333444666789999999994
No 173
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.18 E-value=0.00047 Score=63.16 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... ... .++.+......+.-++...++.|+||||.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTE--------ATIGVDFRERAVDIDGERIKIQLWDTAGQ 79 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCS-SCC--------CCCSCCEEEEEEEETTEEEEEEEEECCCS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC-CCC--------CCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 4789999999999999999998765221 111 11111112222333555789999999994
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.18 E-value=0.00019 Score=66.35 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.++|+|+||||||||++.|.+.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356699999999999999999543
No 175
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.16 E-value=0.00014 Score=69.66 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=25.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
|+|+|+||||||||+++|.+. .|.|. +.|+
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~--~g~v~---~~~~ 52 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY--KNDIC---LLTE 52 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG--TTTEE---EECC
T ss_pred EEEECCCCCCHHHHHHHHHhc--cCCeE---EEec
Confidence 499999999999999999775 67788 5555
No 176
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.16 E-value=0.00041 Score=63.70 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccc
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
-.+.++++|.+|+|||||+|.|....
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 35789999999999999999998765
No 177
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.16 E-value=0.00057 Score=62.68 Aligned_cols=61 Identities=30% Similarity=0.409 Sum_probs=41.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|....... .. ..++........+.-++....+.|+|+||.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SY--------ISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CC--------CCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CC--------CCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 45789999999999999999998655221 11 112222222333344566789999999994
No 178
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.14 E-value=0.00054 Score=61.88 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=39.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|........ .. .++........+.-++...++.|+|+||.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 71 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEF-QE--------STIGAAFFSQTLAVNDATVKFEIWDTAGQ 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTT-SC--------CCSCCSEEEEEEEETTEEEEEEEEECCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCc-CC--------CCceeEEEEEEEEECCEEEEEEEEeCCCC
Confidence 357899999999999999999987653211 11 11111111222233455788999999994
No 179
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.13 E-value=0.00055 Score=63.79 Aligned_cols=60 Identities=27% Similarity=0.387 Sum_probs=39.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... .. ..++........+.-+|....+.|+||||.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SF--------ITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCC-SS--------SCCCSCCEEEEEEEETTEEEEEEEECCTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-cc--------CCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 4789999999999999999998665211 11 111222222223334566789999999994
No 180
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.13 E-value=0.00021 Score=81.97 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=32.9
Q ss_pred Cceeeecccccc-----cccceeecceEEE------EEEcCCCCCHHHHHHHH
Q psy91 78 DYIGFATLPEQV-----HRKSVKKGFDFTL------MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 78 ~~i~~~~l~~~~-----~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L 119 (541)
+.+.+++....+ ++..++++++|.+ +|+||||||||||||++
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 346666655444 2356899999987 99999999999999999
No 181
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.13 E-value=0.00058 Score=63.34 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=40.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|...... ... ..++........+.-++....+.|+||||.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQY--------KATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSC--------CCCCSEEEEEEEEESSSCEEEEEEEEECSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCC--------CCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 3578999999999999999999876522 111 112222222333334555788999999995
No 182
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.12 E-value=0.00053 Score=63.77 Aligned_cols=62 Identities=27% Similarity=0.424 Sum_probs=40.7
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++++++|.+|+|||||+|.|....... ... .++.+......+.-++....+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYI--------STIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCC--------CSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCC--------CcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 35789999999999999999998765221 111 112222222223335667899999999954
No 183
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.12 E-value=0.00066 Score=62.16 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=40.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++++++|.+|+|||||+|.|....... ...+ +..+......+.-++....+.|+|+||..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~--------t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVS--------TVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCC--------CCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCC--------ceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 35789999999999999999998765221 1111 11112222222334557889999999964
No 184
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.11 E-value=0.00025 Score=65.84 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|+||||||||++.|.+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 355699999999999999999654
No 185
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.11 E-value=0.00058 Score=62.87 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|....... .. ..+.........+.-++...++.|+||||.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDH-NI--------SPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCT-TC--------CCCSSEEEEEEEEECSSSEEEEEEEEECCS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-Cc--------CCCcceeEEEEEEEeCCEEEEEEEEcCCCc
Confidence 4789999999999999999998765211 11 111222222222333445788999999994
No 186
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.10 E-value=0.00052 Score=63.25 Aligned_cols=61 Identities=28% Similarity=0.499 Sum_probs=38.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..+++.++|.+|+|||||+|.|........ . ..++.+......+.-++....+.|+|+||.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEA-C--------KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-----------------CCTTEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcC-C--------CCccceeEEEEEEEECCeEEEEEEEeCCCc
Confidence 457899999999999999999987552211 1 111222222223333566789999999994
No 187
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.10 E-value=0.0014 Score=73.21 Aligned_cols=29 Identities=38% Similarity=0.505 Sum_probs=25.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYG 289 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~ 289 (541)
-.+++.|+|.+|+|||||+|.|.+.+...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~ 96 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLP 96 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45789999999999999999999876443
No 188
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.10 E-value=0.00047 Score=61.50 Aligned_cols=61 Identities=28% Similarity=0.417 Sum_probs=38.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++++|.+|+|||||+|.|..... .....+.. . ... . ..+.-++-...+.++||||..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~----~--~~~-~--~~~~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTF-RESYIPTV----E--DTY-R--QVISCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC-CSSCCCCS----C--EEE-E--EEEEETTEEEEEEEEECCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCc----c--ccE-E--EEEEECCEEEEEEEEECCCchh
Confidence 47899999999999999999987552 22111111 1 111 1 1122344567899999999653
No 189
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.08 E-value=0.00079 Score=60.63 Aligned_cols=61 Identities=28% Similarity=0.329 Sum_probs=40.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++++|.+|+|||||+|.|....... ... .++..... ..+.-+|....+.++|+||..+
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--------~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYFVS-DYD--------PTIEDSYT-KICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCS-SCC--------TTCCEEEE-EEEEETTEEEEEEEEECCCTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCcc-ccC--------CCcCceEE-EEEEECCEEEEEEEEECCCchh
Confidence 4789999999999999999998764221 111 11111111 2233456678999999999643
No 190
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.08 E-value=0.00088 Score=66.98 Aligned_cols=61 Identities=28% Similarity=0.402 Sum_probs=37.6
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+.++|.+|+|||||+|.|.......... ..+.|.. .....+..+ ..++.++||||+.+..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~------~~~tTr~--~i~~i~~~~--~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISP------RPQTTRK--RLRGILTEG--RRQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCS------SSCCCCS--CEEEEEEET--TEEEEEEECCCCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecC------CCCceeE--EEEEEEEeC--CcEEEEecCccccchh
Confidence 48899999999999999999776321111 1111111 011111122 5689999999998753
No 191
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.08 E-value=5.1e-05 Score=81.28 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=40.4
Q ss_pred eeecccccccccceeecceEEE----EEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 81 GFATLPEQVHRKSVKKGFDFTL----MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 81 ~~~~l~~~~~~~~iL~~isl~i----aIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
.++++...|....+++++++.+ +|+||||+|||||+++|++....+.+. ++|.
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~---i~g~ 98 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT---ASGS 98 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEE---EEGG
T ss_pred HHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eehh
Confidence 4556666666666788887776 999999999999999996655566666 5665
No 192
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.00077 Score=61.66 Aligned_cols=61 Identities=28% Similarity=0.411 Sum_probs=40.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ... ..+..+......+.-++...++.|+||||..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD-PEL--------AATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTC--------CCCCSEEEEEEEEEETTEEEEEEEEEECSSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-ccC--------CCccceEEEEEEEEECCeEEEEEEEeCCCch
Confidence 478999999999999999999876522 111 1122222222223335557899999999953
No 193
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.07 E-value=0.00019 Score=70.76 Aligned_cols=108 Identities=39% Similarity=0.697 Sum_probs=67.2
Q ss_pred ecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhc------ccCcceeeccccchhhhhcccceeEEEcC
Q psy91 315 ERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDEN------RQGKTTTIEKKSMDIEERGVKLRLTVVDT 388 (541)
Q Consensus 315 e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~------~~~rt~~i~~~~~di~~~~l~~rvnvIpv 388 (541)
.+|+.+++.|+..||.|++.- ++..+..-..... ....++.+......+...+...+++++|+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTL-----------in~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDT 72 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTL-----------INSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDT 72 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHH-----------HHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEEC
T ss_pred cCccEEEEEEECCCCCCHHHH-----------HHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEEC
Confidence 357789999999999997521 1101111000000 01222222223333444556678999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhhccCcccccccccccchhhh
Q psy91 389 PGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNRFA 433 (541)
Q Consensus 389 i~k~D~lt~~e~~~~i~~~i~~~~~~~~~~e~~~~~~~i~d~~v~ 433 (541)
+|++|.++..++|.++.+||+++|..|+.++....|..+.++++|
T Consensus 73 pG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~ 117 (274)
T 3t5d_A 73 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQ 117 (274)
T ss_dssp CCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCC
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCcee
Confidence 999999999999999999999999999988877766666555544
No 194
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.06 E-value=0.00058 Score=63.45 Aligned_cols=61 Identities=30% Similarity=0.476 Sum_probs=37.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|........ . ..++.+......+.-++....+.|+||||.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD-S--------NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC---------------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc-C--------CCcccceeEEEEEEECCeeeEEEEEcCCCc
Confidence 357899999999999999999986552211 1 112222222223334566789999999994
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.05 E-value=0.00046 Score=72.20 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.8
Q ss_pred eecceEEE------EEEcCCCCCHHHHHHHHhcC
Q psy91 95 KKGFDFTL------MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 95 L~~isl~i------aIiGpSGsGKSTLL~~L~~~ 122 (541)
-+++++++ +|+|+|||||||||++|++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 47888888 99999999999999999654
No 196
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.05 E-value=9.4e-05 Score=73.61 Aligned_cols=30 Identities=33% Similarity=0.335 Sum_probs=25.5
Q ss_pred cceeecceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 92 KSVKKGFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 92 ~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
..+|+++++.+ +|+||||||||||++.|++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34688888766 9999999999999999944
No 197
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.04 E-value=0.00083 Score=59.90 Aligned_cols=61 Identities=30% Similarity=0.304 Sum_probs=36.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+++.++|.+|+|||||+|.|........... ..+ .......+.-++....+.++|+||..+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM-------ENS--EDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC---------------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccC-------CCc--CCeeeEEEEECCeEEEEEEEECCCccc
Confidence 6799999999999999999975431111110 011 122222333456678999999999864
No 198
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.03 E-value=0.00063 Score=62.48 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=38.9
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|........ .. .++........+.-++....+.|+||||.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 80 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HD--------LTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------CCSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-CC--------CcccceeEEEEEEECCEEEEEEEEECCCc
Confidence 357899999999999999999987652211 11 11111111222333555789999999994
No 199
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.03 E-value=0.00029 Score=62.90 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=16.7
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||||.+|
T Consensus 27 ~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999999999999
No 200
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.03 E-value=0.00088 Score=61.02 Aligned_cols=61 Identities=18% Similarity=0.342 Sum_probs=38.5
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeee-EEEeeecCe---------eeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK-SMDIEERGV---------KLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~-~~~i~e~gv---------~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... .... ..++.+... ...+.-++. ...+.++|+||.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 80 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKF--------ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSC--------CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCc--------ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc
Confidence 357899999999999999999987552 1111 112222221 111222222 678999999997
No 201
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.03 E-value=0.00027 Score=72.49 Aligned_cols=62 Identities=6% Similarity=0.046 Sum_probs=41.9
Q ss_pred CCCCCCCcceEEeeeEEEe---eecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccc
Q psy91 295 NVNDRQGKTTTIEKKSMDI---EERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKK 370 (541)
Q Consensus 295 ~ls~g~~q~v~I~~~~~~i---~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~ 370 (541)
.+|+|++|++.|+.+++.+ .+..-+++++++|||..+.+..... .+.+++.+.. .++++.+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~-----------~l~~~l~~~~---qt~i~~th 329 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQ-----------YLLDLAASVP---QAIVTGTE 329 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHH-----------HHHHHHHHSS---EEEEEESS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHH-----------HHHHHHHhcC---cEEEEEEe
Confidence 5899999999999998721 1121279999999997776544432 4445554432 46666777
No 202
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.01 E-value=0.0011 Score=58.57 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=38.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+++.++|.+|+|||||+|.|....... ...+. . ... . ...+.-++....+.++|+||..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~----~--~~~-~--~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPT----I--EDF-Y--RKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTT----C--CEE-E--EEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCC----c--cee-E--EEEEEECCEEEEEEEEECCCch
Confidence 3689999999999999999998665221 11111 0 111 1 1223335667889999999954
No 203
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.01 E-value=0.00027 Score=68.82 Aligned_cols=29 Identities=34% Similarity=0.258 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh---cC--CCCCCee
Q psy91 101 TLMVVGESGLGKSTLVNSLF---LS--DLYGDRK 129 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~---~~--~~~G~i~ 129 (541)
.|+|+||||||||||+++|+ +. ++.|.++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 45999999999999999995 53 2345553
No 204
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.99 E-value=0.00034 Score=73.53 Aligned_cols=80 Identities=8% Similarity=-0.034 Sum_probs=53.9
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
.+..+|+|+++++.|+.+++..+. -+++++|+|||..+.+..+.. .+.+++.+..+.+.++++.+|+
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~--~~~~~lllDEp~~~LD~~~~~-----------~l~~~l~~~~~~~~~~ii~th~ 396 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSY--QPSPFFVLDEVDAALDITNVQ-----------RIAAYIRRHRNPDLQFIVISLK 396 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTS--SCCSEEEESSTTTTCCHHHHH-----------HHHHHHHHHCBTTBEEEEECSC
T ss_pred ccccCCcchHHHHHHHHHHHHhcC--CCCCEEEeCCCcccCCHHHHH-----------HHHHHHHHHhcCCCEEEEEECC
Confidence 345689999999999998763110 168999999997776554442 5566666554446778888888
Q ss_pred chhhhhcccceeEEE
Q psy91 372 MDIEERGVKLRLTVV 386 (541)
Q Consensus 372 ~di~~~~l~~rvnvI 386 (541)
..+. ....++.+|
T Consensus 397 ~~~~--~~~d~~~~~ 409 (430)
T 1w1w_A 397 NTMF--EKSDALVGV 409 (430)
T ss_dssp HHHH--TTCSEEEEE
T ss_pred HHHH--HhCCEEEEE
Confidence 5443 345555555
No 205
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.99 E-value=0.0015 Score=59.31 Aligned_cols=60 Identities=27% Similarity=0.404 Sum_probs=39.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|....... ...+. +... ....+.-++....+.++||||..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t-------~~~~--~~~~~~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVD-EYDPT-------IEDS--YRKQVVIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCC-CCCTT-------CCEE--EEEEEEETTEEEEEEEEECCCC-
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCC-------chhe--EEEEEEECCcEEEEEEEECCCcH
Confidence 4789999999999999999998765222 11111 1111 11223345667889999999954
No 206
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.98 E-value=0.0012 Score=58.63 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=38.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... ..... .+..... ...+.-++-...+.++|+||..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~--------~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF-VEKYD--------PTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-CCSCC--------CCSEEEE-EEEEESSSCEEEEEEEEECSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCC--------CCccceE-EEEEEECCEEEEEEEEECCChH
Confidence 36899999999999999999987542 11111 1111111 1122334557889999999964
No 207
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.97 E-value=0.0016 Score=57.55 Aligned_cols=60 Identities=22% Similarity=0.435 Sum_probs=37.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ....+. ..... ...+.-++...++.++|+||..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT------KADSY---RKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTT------CCEEE---EEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCC------cceEE---EEEEEECCEEEEEEEEECCCcc
Confidence 368999999999999999999876522 111111 11111 1122334556889999999964
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.96 E-value=0.00031 Score=63.55 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||||||||||+++|++
T Consensus 7 i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999954
No 209
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.95 E-value=0.0012 Score=64.76 Aligned_cols=60 Identities=28% Similarity=0.296 Sum_probs=38.0
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+++.++|.+|+|||||+|.|.+...... . -...++..... .+.-++ ..+.|+||||..+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~-~------~~~~t~~~~~~--~~~~~~--~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVG-N------WPGVTVEKKEG--IMEYRE--KEFLVVDLPGIYSL 63 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEE-E------CTTSSCEEEEE--EEEETT--EEEEEEECCCCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccC-C------CCCeEEEeeEE--EEEECC--ceEEEEeCCCcccc
Confidence 6789999999999999999986542110 0 11122332222 222233 45999999998754
No 210
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.94 E-value=0.00037 Score=67.34 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=22.2
Q ss_pred EEEEcCCCCCHHHHHHHHh---cCC--CCCCee
Q psy91 102 LMVVGESGLGKSTLVNSLF---LSD--LYGDRK 129 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~---~~~--~~G~i~ 129 (541)
++|+||||||||||+++|+ +.. +.|++.
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~ 62 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFL 62 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEecHHHHH
Confidence 4999999999999999996 543 345554
No 211
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.94 E-value=0.0015 Score=59.13 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=40.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++++|.+|+|||||+|.|....... ...+ +..... ...+.-++....+.++|+||..+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~-~~~~--------t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFVD-SYDP--------TIENTF-TKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-CCCT--------TCCEEE-EEEEEETTEEEEEEEEECCCCCT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCC--------CccccE-EEEEEECCEEEEEEEEeCCCchh
Confidence 5789999999999999999998655221 1111 111111 22233456678899999999654
No 212
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.94 E-value=0.00033 Score=65.58 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|+.
T Consensus 23 vl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 23 VLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHh
Confidence 8999999999999999954
No 213
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.94 E-value=0.00024 Score=72.69 Aligned_cols=61 Identities=23% Similarity=0.176 Sum_probs=39.8
Q ss_pred EEEcCCCCCHHHHHHHHhcC----CCC----CC-eeecccCCccceecccccccccccccEEEEeCCCccccccccccCC
Q psy91 103 MVVGESGLGKSTLVNSLFLS----DLY----GD-RKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQ 173 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~----~~~----G~-i~~~~~~G~~~~~~~~~~~~~~~~~~~g~V~Q~~~l~~~lig~~~q 173 (541)
+|+||||||||||++.|++. +.. |. |+ ++++ .. ....++++++|...+++.
T Consensus 135 ~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~---i~~e----~~------~~~~~i~~i~q~~~~~~~------- 194 (349)
T 1pzn_A 135 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW---IDTE----NT------FRPERIREIAQNRGLDPD------- 194 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEE---EESS----SC------CCHHHHHHHHHTTTCCHH-------
T ss_pred EEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEE---EeCC----CC------CCHHHHHHHHHHcCCCHH-------
Confidence 99999999999999999432 233 44 55 4444 11 112346677777665532
Q ss_pred Ccccceeccc
Q psy91 174 TDRDYIGFAT 183 (541)
Q Consensus 174 tv~e~l~~~~ 183 (541)
++.+|+.+..
T Consensus 195 ~v~~ni~~~~ 204 (349)
T 1pzn_A 195 EVLKHIYVAR 204 (349)
T ss_dssp HHGGGEEEEE
T ss_pred HHhhCEEEEe
Confidence 6788888763
No 214
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.93 E-value=0.00032 Score=65.31 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
++|+||||||||||+++|++.
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 389999999999999999554
No 215
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.93 E-value=0.00077 Score=60.74 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=36.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec-CeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER-GVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~-gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|...... ....+ ++........+.-+ +....+.++|+||.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKA--------TIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC-----------CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCC--------ccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 3578999999999999999999876522 11111 11111111122222 44678999999994
No 216
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.93 E-value=0.0016 Score=57.44 Aligned_cols=59 Identities=27% Similarity=0.439 Sum_probs=38.5
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
++++++|.+|+|||||+|.|....... ...+.. .... ...+.-++....+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~------~~~~---~~~~~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTI------EDSY---RKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTC------CEEE---EEEEEETTEEEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCcc------ceEE---EEEEEECCEEEEEEEEECCCch
Confidence 679999999999999999998664221 111110 1111 1223335557889999999964
No 217
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.93 E-value=0.00033 Score=65.91 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|+|+||||||||||++.|+..
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhh
Confidence 489999999999999999654
No 218
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.93 E-value=0.00096 Score=62.03 Aligned_cols=61 Identities=30% Similarity=0.550 Sum_probs=38.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... ... ...++.+......+.-++....+.|+|+||.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~--------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SER--------QGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-------------------CEEEEEEEETTEEEEEEEECCTTC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCC--------CCCCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 357899999999999999999986552 111 1223332222233344566789999999995
No 219
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.92 E-value=0.00026 Score=64.29 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=23.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~~~~~~G~ 136 (541)
++|+||||||||||+++|++.. |.+. +++.
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~--g~~~---i~~d 40 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQL--HAAF---LDGD 40 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH--TCEE---EEGG
T ss_pred EEEEcCCCCCHHHHHHHHHHhh--CcEE---EeCc
Confidence 4899999999999999995432 5666 5554
No 220
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.92 E-value=0.0009 Score=59.97 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=35.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+++.++|.+|+|||||+|.|........ .. ..+ .+. ... .+.-++...++.++|+||...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~---~~~--~~~--~~~--~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDL-HE---QLG--EDV--YER--TLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CC---CSS--SSE--EEE--EEEETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccc-cC---ccc--cce--eEE--EEEECCEEEEEEEEecCCCCc
Confidence 47899999999999999999987652211 11 111 111 111 222345578899999999754
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.90 E-value=0.00055 Score=67.85 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=36.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.++++++|.+|+|||||+|+|.......... ....|.... .+.+ ...+.++||||+.+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~------~~g~T~~~~--~~~~-----~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGD------RPGITTSQQ--WVKV-----GKELELLDTPGILWPK 179 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------------C--CEEE-----TTTEEEEECCCCCCSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCC------CCCeeeeeE--EEEe-----CCCEEEEECcCcCCCC
Confidence 4789999999999999999998765221111 111111111 1111 3478999999998753
No 222
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.90 E-value=0.00053 Score=62.51 Aligned_cols=56 Identities=32% Similarity=0.459 Sum_probs=36.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
++++++|.+|+|||||+|.|..... .....+ ++.+....+.+ . .+.++||||+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~--------~~t~~~~~~~~-----~-~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRP--------GVTRKIIEIEW-----K-NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSST--------TCTTSCEEEEE-----T-TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCC--------CccceeEEEec-----C-CEEEEECCCcccc
Confidence 5789999999999999999987652 211111 11111112221 1 7899999998764
No 223
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.89 E-value=0.0009 Score=60.60 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=39.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||++.|..... .....+... ... ...+.-++....+.++||||..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~------~~~---~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVF------DNY---SANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSC------CEE---EEEEEETTEEEEEEEECCCCSG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCccc------cee---EEEEEECCEEEEEEEEECCCCH
Confidence 46899999999999999999986552 222211110 011 1122335667889999999973
No 224
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.87 E-value=0.0031 Score=56.35 Aligned_cols=59 Identities=34% Similarity=0.571 Sum_probs=35.4
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+.+.++|.+|+|||||+|.|........ ..+ ++.+......+.-++ ..+.++||||.-+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~-~~~--------~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIG-NWP--------GVTVEKKEGEFEYNG--EKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC--------------CCCCCEEEEEETT--EEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeecc-CCC--------CcceeeeEEEEEECC--cEEEEEECCCccc
Confidence 5789999999999999999986542111 111 111111111122223 5789999999754
No 225
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.86 E-value=0.0011 Score=62.19 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=39.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCe----------eeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV----------KLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv----------~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... .. ....++.+......+.-++. ..++.|+||||.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~--------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF-NP--------KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC-CC--------EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC-Cc--------CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 457899999999999999999986542 11 11223333322222222222 678999999993
No 226
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.86 E-value=0.00034 Score=71.71 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=27.7
Q ss_pred ecccccccc---cceeecceEEE---EEEcCCCCCHHHHHHHHhcC
Q psy91 83 ATLPEQVHR---KSVKKGFDFTL---MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 83 ~~l~~~~~~---~~iL~~isl~i---aIiGpSGsGKSTLL~~L~~~ 122 (541)
+++...|+. ..+|+++++.+ +|+|++||||||||+.|.+.
T Consensus 12 ~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 12 QRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344555543 35788888877 99999999999999999763
No 227
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.85 E-value=0.00013 Score=73.71 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=25.0
Q ss_pred ecceEEE------EEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 96 KGFDFTL------MVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 96 ~~isl~i------aIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
.+++|.+ +|+|||||||||++..|++ .+..|.|.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4565532 9999999999999999943 23456666
No 228
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.84 E-value=0.00059 Score=61.91 Aligned_cols=61 Identities=28% Similarity=0.410 Sum_probs=26.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .. ....++.+......+.-+|....+.|+|+||..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~--------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF-NS--------TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEECCCCC-------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CC--------CCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 57899999999999999999875431 11 111233333322333345667899999999964
No 229
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.84 E-value=0.0023 Score=57.82 Aligned_cols=60 Identities=22% Similarity=0.435 Sum_probs=39.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ....+. ..... ...+.-++....+.|+|+||..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT------KADSY---RKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCTT------CCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCc------cceEE---EEEEEECCEEEEEEEEECCCCc
Confidence 478999999999999999999876522 111111 11111 1222335556789999999964
No 230
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=96.84 E-value=6.9e-05 Score=66.98 Aligned_cols=78 Identities=5% Similarity=0.040 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCcceEEe------eeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcc
Q psy91 291 RKVPNVNDRQGKTTTIE------KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKT 364 (541)
Q Consensus 291 ~~~~~ls~g~~q~v~I~------~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt 364 (541)
+.+..+|+|++|++.|+ ++++. +++++|+|||..|.+..... .+.+.+.+..+.+++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~------~p~lllLDEPt~~LD~~~~~-----------~l~~~l~~~~~~~~t 115 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAG------EISLLILDEPTPYLDEERRR-----------KLITIMERYLKKIPQ 115 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHS------SCSEEEEESCSCTTCHHHHH-----------HHHHHHHHTGGGSSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcC------CCCEEEEECCCccCCHHHHH-----------HHHHHHHHHHccCCE
Confidence 45667999999999876 55555 79999999998876655443 556666665555788
Q ss_pred eeeccccchhhhhcccceeEEEc
Q psy91 365 TTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 365 ~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+++.+|+.++. .+..++.++.
T Consensus 116 iiivsH~~~~~--~~~d~ii~l~ 136 (148)
T 1f2t_B 116 VILVSHDEELK--DAADHVIRIS 136 (148)
T ss_dssp EEEEESCGGGG--GGCSEEEEEE
T ss_pred EEEEEChHHHH--HhCCEEEEEE
Confidence 99999997543 4566666653
No 231
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0012 Score=62.40 Aligned_cols=62 Identities=26% Similarity=0.462 Sum_probs=39.5
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++++++|.+|+|||||+|.|........ .. .++.+......+.-++....+.|+||||..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-SK--------STIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC---------------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCC-CC--------CcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 357899999999999999999987652211 11 112211222223335556899999999954
No 232
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.82 E-value=0.0004 Score=71.22 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+|||||||||||++|++
T Consensus 126 i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 39999999999999999954
No 233
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.82 E-value=0.0013 Score=60.84 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=38.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.++++++|.+|+|||||+|.|...... .... .++.... ...+.-++....+.|+||||..+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~--------~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYD--------PTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCC--------CCSEEEE-EEEEC----CEEEEEEEECCCCT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCC--------CccceEE-EEEEEECCEEEEEEEEECCCccc
Confidence 578999999999999999999876532 1111 1121111 12222334468899999999643
No 234
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.81 E-value=0.0027 Score=58.54 Aligned_cols=60 Identities=22% Similarity=0.435 Sum_probs=39.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ....+. ..... ...+.-++....+.|+|+||..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPT------KADSY---RKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCTT------CCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc------cceEE---EEEEEECCEEEEEEEEcCCChh
Confidence 478999999999999999999876522 111111 11111 1222335557889999999964
No 235
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.80 E-value=0.001 Score=63.10 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=37.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.++++|.+|+|||||+|.|....... ... .+..+...+.. .. -+ ...+.|+||||..+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~-~~~----~~~t~~~~~~~--~~--~~--~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDV-QSY----SFTTKNLYVGH--FD--HK--LNKYQIIDTPGLLDR 89 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEE-ECC---------CEEEEE--EE--ET--TEEEEEEECTTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc-CCC----CCcceeeeeee--ee--cC--CCeEEEEECCCCcCc
Confidence 4689999999999999999998765321 110 01111121111 11 11 367999999999764
No 236
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.79 E-value=0.002 Score=62.77 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=38.0
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
++.++|.+|+|||||+|.|.+....... -...++...... +.-+| ..+.|+||||..+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~-------~pg~Tv~~~~~~--~~~~~--~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGN-------WPGVTVEKKTGE--FLLGE--HLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEE-------CTTSSSEEEEEE--EEETT--EEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccC-------CCCceEEEEEEE--EEECC--eEEEEEeCCCccccc
Confidence 5889999999999999999865421111 112233322222 22233 389999999986543
No 237
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.79 E-value=0.0026 Score=57.97 Aligned_cols=60 Identities=28% Similarity=0.447 Sum_probs=38.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... ....+. ....+ ...+.-++....+.|+|+||..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPT------IEDSY---RKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTT------CCEEE---EEEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCc------cceEE---EEEEEECCEEEEEEEEECCChH
Confidence 478999999999999999999866522 111111 11111 1123335557889999999954
No 238
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.77 E-value=0.0015 Score=62.02 Aligned_cols=61 Identities=25% Similarity=0.442 Sum_probs=40.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.|.++++|.+|+|||+|++++.... +.... ..|+.+......+.-++...+|.|+||+|.-
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~--------~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTY--------QATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC------------------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCc--------CCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 3789999999999999999987654 22221 2344444444445566778999999999853
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.75 E-value=0.00013 Score=79.26 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=39.1
Q ss_pred ceeeecccccccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc--CCCCCCee
Q psy91 79 YIGFATLPEQVHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL--SDLYGDRK 129 (541)
Q Consensus 79 ~i~~~~l~~~~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~--~~~~G~i~ 129 (541)
.++++++...|+...++.++++.+ +|+||||||||||+++|++ .+..|.|.
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~ 140 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 467788888887777777777643 9999999999999999933 34445555
No 240
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.74 E-value=0.00081 Score=62.20 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=20.6
Q ss_pred cceeeEeccCCcchhHHHHhhhccc--ccCCCCCCCCCCCCCCcceEEeeeEEEeeecCe--eeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLS--DLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV--KLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~--~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv--~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|... ... .. ...++.+......+.-++. ...+.|+||||.
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~--------~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL-KD--------YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEC-------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc-CC--------CCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 3578999999999999999999866 311 11 1122222222222333444 788999999997
No 241
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.74 E-value=0.0025 Score=58.53 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=40.2
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.++++++|.+|+|||||+|.|..... ..... .++..... ..+.-++....+.|+||||.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~--------~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~ 81 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYV--------PTVFENFS-HVMKYKNEEFILHLWDTAGQ 81 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCC--------CCSEEEEE-EEEEETTEEEEEEEEEECCS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccC--------CeeeeeeE-EEEEECCEEEEEEEEECCCc
Confidence 457899999999999999999987652 21111 12221111 22344566788999999984
No 242
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.00094 Score=61.36 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=38.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .....+. +.... ...+.-++....+.|+||||..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t--------~~~~~-~~~~~~~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTF-RDTYIPT--------IEDTY-RQVISCDKSVCTLQITDTTGSH 67 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCC-CCTTSCC--------CCEEE-EEEEEETTEEEEEEEEECCGGG
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCC-CCcccCc--------cccce-eEEEEECCEEEEEEEEeCCChH
Confidence 57899999999999999999987552 2211111 11111 1112334557789999999953
No 243
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.74 E-value=0.001 Score=62.32 Aligned_cols=63 Identities=19% Similarity=0.434 Sum_probs=39.7
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEe-eecCeeeeEEEEcCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDI-EERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i-~e~gv~~~L~I~DePg~G 331 (541)
...++++++|.+|+|||||+|.|...... ... ..+.........+ ..++....+.|+||||..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFE-KNY--------NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTT-CEE--------ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCC-CCC--------CCccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 45689999999999999999999865421 110 1111122222222 234445889999999954
No 244
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.73 E-value=0.00056 Score=72.16 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.++|+|+||||||||++.|++.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 56699999999999999999654
No 245
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.72 E-value=0.00023 Score=81.35 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=66.7
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeee--EEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR--LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~--L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
+..+.+..+..++.+..+|+|++|++.|++++.. ++. ++|+|||+.|.+..... .+.+.|.
T Consensus 448 L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~------~p~~~lllLDEPT~gLD~~~~~-----------~l~~~L~ 510 (916)
T 3pih_A 448 LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGS------GLTGVIYVLDEPTIGLHPRDTE-----------RLIKTLK 510 (916)
T ss_dssp HHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHT------TCCSCEEEEECTTTTCCGGGHH-----------HHHHHHH
T ss_pred HHHcCCccccccCCcccCCHHHHHHHHHHHHHhh------CCCCcEEEEECCccCCCHHHHH-----------HHHHHHH
Confidence 3334444434567788999999999999999876 565 99999998887665543 6667777
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+..+.+.|+++++|++++.. ...++.++
T Consensus 511 ~L~~~G~TvivVtHd~~~~~--~aD~ii~l 538 (916)
T 3pih_A 511 KLRDLGNTVIVVEHDEEVIR--NADHIIDI 538 (916)
T ss_dssp HTTTTTCEEEEECCCHHHHH--TCSEEEEE
T ss_pred HHHhcCCEEEEEeCCHHHHH--hCCEEEEE
Confidence 77777899999999987653 36666666
No 246
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.71 E-value=0.0038 Score=57.41 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=41.0
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
-.+++.++|.+|+|||||+|.|...... ....+.. .... ...+.-++....+.++|+||..+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~------~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTL------ESTY---RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTC------CEEE---EEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCC------CceE---EEEEEECCEEEEEEEEECCCCCc
Confidence 4578999999999999999999876532 1111111 1111 11223345578899999999875
No 247
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.69 E-value=0.0018 Score=57.74 Aligned_cols=56 Identities=20% Similarity=0.463 Sum_probs=37.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... . .. .++.+....+.+ + ..++.++||||..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~-~~--------~t~~~~~~~~~~--~--~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-T-TI--------PTIGFNVETVTY--K--NLKFQVWDLGGLT 62 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-C-CC--------CCSSEEEEEEEE--T--TEEEEEEEECCCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-C-cC--------CcCccceEEEEE--C--CEEEEEEECCCCh
Confidence 368999999999999999999876532 1 11 122222222222 1 5789999999964
No 248
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.69 E-value=0.00044 Score=70.17 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=56.3
Q ss_pred eeEeccCCcchhHHHHhhhcccccCC----------CCCCC---C---C-C-CCCCcceEEeeeEEEeeecCeeeeEEEE
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYG----------DRKVP---N---V-N-DRQGKTTTIEKKSMDIEERGVKLRLTVV 325 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~----------~~~~~---~---l-s-~g~~q~v~I~~~~~~i~e~gv~~~L~I~ 325 (541)
.+.++|++|+||||+++.|...--.. ....+ . + . +|+++++.|++++.. +|+++|+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~------~p~ilil 246 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRM------RPDRIIL 246 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTS------CCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhh------CCCEEEE
Confidence 57899999999999999986431000 00000 0 0 0 567778888887766 8999999
Q ss_pred cCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhh
Q psy91 326 DTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIE 375 (541)
Q Consensus 326 DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~ 375 (541)
|||... ...++|......+.++++.+|..+..
T Consensus 247 dE~~~~------------------e~~~~l~~~~~g~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 247 GELRSS------------------EAYDFYNVLCSGHKGTLTTLHAGSSE 278 (330)
T ss_dssp CCCCST------------------HHHHHHHHHHTTCCCEEEEEECSSHH
T ss_pred cCCChH------------------HHHHHHHHHhcCCCEEEEEEcccHHH
Confidence 999651 12334444433334677888887643
No 249
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.68 E-value=0.00078 Score=60.64 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=38.1
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeec-CeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEER-GVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~-gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .... ..++.+......+.-+ +...++.++|+||.-
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~--------~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF-GKQY--------KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT-THHH--------HHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC-CCCC--------CCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 47899999999999999999987652 1110 0111111111122222 246899999999954
No 250
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.68 E-value=0.0021 Score=59.46 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=38.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.+.++|.+|+|||||++.|....... ... .++.+......+.-+|....+.++|+||.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~--------~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~ 64 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESK--------STIGVEFATRSIQVDGKTIKAQIWDTAGQ 64 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC------------CCCSCEEEEEEEEETTEEEEEEEEECSSG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCC--------CccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 4688999999999999999998764211 111 11111222223334566788999999985
No 251
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.67 E-value=0.002 Score=57.81 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.+.++|.+|+|||||+|.|....
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998765
No 252
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.67 E-value=0.0016 Score=57.44 Aligned_cols=61 Identities=26% Similarity=0.279 Sum_probs=35.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+++++|.+|+|||||+|.|.......... .. ..........+.-++ .++.++||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~------~~--~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD------VP--GVTRDLKEGVVETDR--GRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------------CCEEEEEEETT--EEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC------CC--CceecceEEEEEeCC--ceEEEEECCCCCCc
Confidence 468999999999999999998654211110 00 111111222222233 37889999998753
No 253
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.66 E-value=0.0005 Score=64.31 Aligned_cols=28 Identities=32% Similarity=0.179 Sum_probs=21.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC--CCCCCee
Q psy91 102 LMVVGESGLGKSTLVNSLFLS--DLYGDRK 129 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~--~~~G~i~ 129 (541)
++|+|+||||||||+++|.+. +..|.+.
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 499999999999999999442 2344554
No 254
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.66 E-value=0.00069 Score=70.23 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
..++|+|+||||||||+|+|.+
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4569999999999999999965
No 255
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.66 E-value=0.00056 Score=63.37 Aligned_cols=62 Identities=29% Similarity=0.404 Sum_probs=40.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..+++.++|.+|+|||||+|.|........ ...+.........+.-++....+.|+||||.-
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTES---------YISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCH---------HHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCC---------cCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 457899999999999999999886442110 01122222222333345667899999999953
No 256
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.65 E-value=0.00026 Score=73.03 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=28.9
Q ss_pred ceeecceEEE------EEEcCCCCCHHHHHHHHhcCCCCCCee
Q psy91 93 SVKKGFDFTL------MVVGESGLGKSTLVNSLFLSDLYGDRK 129 (541)
Q Consensus 93 ~iL~~isl~i------aIiGpSGsGKSTLL~~L~~~~~~G~i~ 129 (541)
.+|+++++.+ +|+||||||||||+++|++. ..|.+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-~~g~~~ 198 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-CGGKAL 198 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-HCCEEE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-cCCcEE
Confidence 5788888876 99999999999999999753 345444
No 257
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.65 E-value=0.0022 Score=58.59 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=38.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|........... .++.+....+.+ + ..++.|+||||..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--------~t~~~~~~~~~~--~--~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--------PTIGFSIEKFKS--S--SLSFTVFDMSGQG 78 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--------CCSSEEEEEEEC--S--SCEEEEEEECCST
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--------CccceeEEEEEE--C--CEEEEEEECCCCH
Confidence 47899999999999999999987652222111 122222222222 2 3689999999954
No 258
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.64 E-value=0.0028 Score=58.39 Aligned_cols=63 Identities=24% Similarity=0.461 Sum_probs=41.3
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+.+.++|.+|+|||||++.|..... .... ..++.+......+.-+|....+.++|+||.-.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~--------~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLES--------KSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-CCSC--------CCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC-CCCC--------CCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 347889999999999999999987542 1111 11222222233344466678888999998643
No 259
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.64 E-value=0.00033 Score=72.95 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=16.0
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+||||||||||++.|
T Consensus 182 ~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 182 ELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEcCCCCChHHHHHHH
Confidence 99999999999999965
No 260
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.63 E-value=0.0011 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45699999999999999999653
No 261
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.63 E-value=0.00077 Score=63.81 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----CCCCCCee
Q psy91 101 TLMVVGESGLGKSTLVNSLFL-----SDLYGDRK 129 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~-----~~~~G~i~ 129 (541)
.|+|+|||||||||+.++|++ .++.|.+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~ 40 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 40 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCccee
Confidence 469999999999999999943 23455555
No 262
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.62 E-value=0.00059 Score=62.70 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=39.5
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPG 329 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg 329 (541)
...|+++++|.+|+|||||+|.|........ . ..+..+......+.-++....+.|+|+||
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 81 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-F--------VSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCC-E--------EEEETTTEEEEEEEETTTTEEEEEECHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-c--------CCCeeeEEEEEEEEECCEEEEEEEEeCCC
Confidence 3568999999999999999999987552111 1 11111122222233344567899999998
No 263
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.62 E-value=0.0021 Score=59.59 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=39.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|..... .....+.. + .. +. ..+.-++....+.|+|+||.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~--~--~~--~~---~~~~~~~~~~~l~i~Dt~G~ 83 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV--F--EN--YI---ADIEVDGKQVELALWDTAGQ 83 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSS--C--CC--CE---EEEEETTEEEEEEEECCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcc--c--ce--EE---EEEEECCEEEEEEEEECCCc
Confidence 467899999999999999999987653 22111111 1 11 11 11233555789999999995
No 264
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.61 E-value=0.0018 Score=58.90 Aligned_cols=61 Identities=28% Similarity=0.468 Sum_probs=37.9
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.+.++|.+|+|||||+|.|.......... ...++..... .+.-++ ..+.++||||..+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~-------~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNW-------PGVTVEKKEG--EFEYNG--EKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEEC-------TTSCCEEEEE--EEEETT--EEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCC-------CCeeccceEE--EEEeCC--cEEEEEECCCcCcc
Confidence 3678999999999999999998653211111 1112222222 222233 67899999997653
No 265
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.60 E-value=0.003 Score=57.36 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=37.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.+++.++|.+|+|||||+|+|.... .. ... .++.+....+.+ + ..++.++||||.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~-~~~--------~t~~~~~~~~~~--~--~~~~~~~Dt~G~ 72 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VD-TIS--------PTLGFNIKTLEH--R--GFKLNIWDVGGQ 72 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CS-SCC--------CCSSEEEEEEEE--T--TEEEEEEEECCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CC-ccc--------ccCccceEEEEE--C--CEEEEEEECCCC
Confidence 35789999999999999999998655 11 111 122222222222 2 478999999997
No 266
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.0022 Score=59.71 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=39.1
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..++++++|.+|+|||||+|.|...... ....+. . ...+. ..+.-++....+.|+||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t----~--~~~~~---~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPT----V--FENYV---ADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------------CCEEE---EEEEETTEEEEEEEEECTTCT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCc----c--cceEE---EEEEECCEEEEEEEEECCCcH
Confidence 3578999999999999999999876522 111111 0 11111 123345667899999999964
No 267
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.58 E-value=0.0036 Score=57.29 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=38.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+++.++|.+|+|||||+|.|..... .....+ ++.... ...+.-++....+.|+||||..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~--------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 80 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF-ISEYDP--------NLEDTY-SSEETVDHQPVHLRVMDTADLD 80 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCT--------TCCEEE-EEEEEETTEEEEEEEEECCC--
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC-CcccCC--------Ccccee-eEEEEECCEEEEEEEEECCCCC
Confidence 357899999999999999999987652 221111 111111 1122335567889999999964
No 268
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.56 E-value=0.0035 Score=57.00 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=39.5
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..+.++++|.+|+|||||+|.|..... .....+ ++.... ...+.-++....+.++|+||.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~--------t~~~~~-~~~~~~~~~~~~~~i~Dt~G~ 65 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP--------TVFENY-TASFEIDTQRIELSLWDTSGS 65 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC--------CSEEEE-EEEEECSSCEEEEEEEEECCS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC--------ccceeE-EEEEEECCEEEEEEEEECCCC
Confidence 457899999999999999999987652 211111 111111 122333555788999999995
No 269
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.55 E-value=0.001 Score=62.38 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=16.7
Q ss_pred EEEcCCCCCHHHHHHHH
Q psy91 103 MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L 119 (541)
+|+|||||||||+|.+|
T Consensus 27 ~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 27 LIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 89999999999999999
No 270
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.55 E-value=0.0023 Score=69.65 Aligned_cols=67 Identities=25% Similarity=0.175 Sum_probs=40.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
...++|+|.+|+|||||+|.|++.... +...+.....|..+......+. .+....+.++||||+++.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~----~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKG----FSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSC----SCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCCG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCc----cccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCcc
Confidence 356899999999999999999986521 1111111122222221111110 122467999999999975
No 271
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.55 E-value=0.00042 Score=65.51 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=17.6
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|++
T Consensus 27 ~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 27 ALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 9999999999999999953
No 272
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.55 E-value=0.0033 Score=58.69 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=40.1
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
...++++++|.+|+|||||+|.|..... ..... .++.... ...+.-++....+.|+||||.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~--------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 86 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV--------PTVFENY-TASFEIDTQRIELSLWDTSGS 86 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC--------CCSEEEE-EEEEESSSSEEEEEEEEECCS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC--------CccceeE-EEEEEECCEEEEEEEEeCCCc
Confidence 3568999999999999999999987652 21111 1221111 122333555788999999995
No 273
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.55 E-value=0.0037 Score=57.11 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=40.6
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+.+.++|.+|+|||||+|.|...... ....+ +.. .....+.-+|....+.|+||||.-
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~--------t~~--~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYV-QEESP--------EGG--RFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCT--------TCE--EEEEEEEETTEEEEEEEEECSSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCC--------Ccc--eEEEEEEECCEEEEEEEEECCCCh
Confidence 4578999999999999999998876532 21111 111 111233445667889999999864
No 274
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.54 E-value=0.0012 Score=59.60 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=32.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.++++++|.+|+|||||+|.|..... .....+. +... ....+.-++....+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t--------~~~~-~~~~~~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPT--------VFDN-FSANVVVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C-------------------CBCCCC-------CEEECCCC-C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCe--------eeee-EEEEEEECCEEEEEEEEECCCCh
Confidence 357899999999999999999986552 2211111 1100 01112224456788899999964
No 275
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.54 E-value=0.0028 Score=56.15 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=34.3
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
|++.++|.+|+|||||+|.|........ +.... ... ...+.-++....+.++|+||..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~------~~~~~--~~~---~~~~~~~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPE------AEAAG--HTY---DRSIVVDGEEASLMVYDIWEQD 60 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC------------------CEE---EEEEEETTEEEEEEEEECC---
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCC------CCccc--cce---EEEEEECCEEEEEEEEECCCCc
Confidence 6799999999999999999975442111 00001 111 1222345667899999999864
No 276
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.53 E-value=0.00078 Score=61.52 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+||||||||||+++|++
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999954
No 277
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.52 E-value=0.0023 Score=56.57 Aligned_cols=55 Identities=24% Similarity=0.467 Sum_probs=35.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
++++++|.+|+|||||+|.|...... . ..+ |+.+....+. -+ ..++.++||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~-~~~--------t~~~~~~~~~--~~--~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-T-TIP--------TIGFNVETVE--YK--NISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-C-CCC--------CSSCCEEEEE--CS--SCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-c-ccC--------cCceeEEEEE--EC--CEEEEEEEcCCCh
Confidence 47899999999999999999876532 1 111 1111111121 12 4789999999973
No 278
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.52 E-value=0.0028 Score=59.46 Aligned_cols=60 Identities=23% Similarity=0.437 Sum_probs=34.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... .....+ ++. ......+.-++....+.|+||||..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~--------t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTP--------TVF-ERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CC--------CCC-EEEEEEEEETTEEEEEEEEEC----
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCC--------ccc-eeEEEEEEECCEEEEEEEEECCCch
Confidence 57899999999999999999986552 111111 110 1112223345667899999999954
No 279
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.51 E-value=0.00073 Score=60.21 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=20.9
Q ss_pred eecceEEE-EEEcCCCCCHHHHHHHHhc
Q psy91 95 KKGFDFTL-MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 95 L~~isl~i-aIiGpSGsGKSTLL~~L~~ 121 (541)
|+++.... +|+||||||||||+++|++
T Consensus 31 l~~~~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 31 LRHKHGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCCCCCSEEEEESSSTTTTCHHHHHHHH
T ss_pred HHhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34434444 9999999999999999944
No 280
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.50 E-value=0.0021 Score=62.66 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+++.++|.+|+|||||+|.|.+........ ...++...... +..+ ...+.|+||||....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~-------pg~tv~~~~~~--~~~~--~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANW-------PGVTVEKKEGV--FTYK--GYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEEC-------TTSCCEEEEEE--EEET--TEEEEEEECCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC-------CCceEEEEEEE--EEEC--CeEEEEEECCCcCcc
Confidence 3689999999999999999998755221111 12233322222 2222 368999999998654
No 281
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.49 E-value=0.0032 Score=58.51 Aligned_cols=60 Identities=27% Similarity=0.423 Sum_probs=38.9
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.+++.++|.+|+|||||++.|....+... ..+ ++. ......+.-++....+.|+||||.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~--------t~~-~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YIP--------TVF-DNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CCC--------CSE-EEEEEEEECC-CEEEEEEEEECCS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-cCC--------eec-ceeEEEEEECCEEEEEEEEECCCc
Confidence 357899999999999999999986553221 111 111 112223334566788999999997
No 282
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.49 E-value=0.00074 Score=69.33 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=37.3
Q ss_pred CCceeeecccccccc-cceee--------------cceEEE------EEEcCCCCCHHHHHHHHh
Q psy91 77 RDYIGFATLPEQVHR-KSVKK--------------GFDFTL------MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 77 ~~~i~~~~l~~~~~~-~~iL~--------------~isl~i------aIiGpSGsGKSTLL~~L~ 120 (541)
.+.+.|+||++.|+. +.+|+ |+.+.+ +|+||||||||||++.|+
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Ia 195 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 195 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHH
Confidence 457899999999975 45788 677777 999999999999999883
No 283
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.49 E-value=0.0013 Score=60.07 Aligned_cols=23 Identities=43% Similarity=0.804 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999653
No 284
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.48 E-value=0.0014 Score=61.77 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=38.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
..++++++|.+|+|||||+|.|...... ... ..+.........+.-++....+.|+||||.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~-~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFE-KKY--------VATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHT-CEE--------ETTTTEEEEEEEEEETTEEEEEEEEEECSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCC--------CCccceeEEEEEEEECCEEEEEEEEeCCCh
Confidence 4578999999999999999996544311 111 011112222222333455788999999994
No 285
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.47 E-value=0.00024 Score=72.39 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=32.5
Q ss_pred eeeecccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 80 IGFATLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
++.+++.+.|+...+++++++.+ +|+|++|||||||++.|++
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44556666777777777776533 9999999999999999954
No 286
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.47 E-value=0.0033 Score=56.57 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=39.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.+.++|.+|+|||||+|.|...... . ..+.. + ... ...+.-+|...++.|+||||.-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~-~-~~~t~--~----~~~---~~~~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ-V-LEKTE--S----EQY---KKEMLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCC-C-CSSCS--S----SEE---EEEEEETTEEEEEEEEECSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-C-cCCCc--c----eeE---EEEEEECCEEEEEEEEECCCCc
Confidence 478999999999999999999876532 2 11111 1 111 1122335667889999999964
No 287
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.46 E-value=0.0011 Score=61.83 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+||+||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 359999999999999999965
No 288
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.46 E-value=0.0049 Score=56.76 Aligned_cols=61 Identities=26% Similarity=0.410 Sum_probs=37.9
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.++++++|.+|+|||||+|.|.... +.....+.. ...+ ...+.-++....+.|+||||.-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~------~~~~---~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTA------FDNF---SAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCS------SEEE---EEEEEETTEEEEEEEEECCCST
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcc------ccee---EEEEEECCEEEEEEEEECCCCH
Confidence 45789999999999999999998765 222111111 1111 1223445667889999999974
No 289
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.45 E-value=0.0028 Score=58.60 Aligned_cols=63 Identities=30% Similarity=0.314 Sum_probs=38.9
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
-.+.++++|.+|+|||||+|.|.......... +. .+...... .+.-++....+.++|+||...
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~-~~------~~~~~~~~--~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE-PE------NPEDTYER--RIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT-TT------SCTTEEEE--EEEETTEEEEEEEECCCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCC-CC------cccceEEE--EEEECCEEEEEEEEecCCCcc
Confidence 35789999999999999999997533111100 00 01111111 223356678899999998753
No 290
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0028 Score=58.08 Aligned_cols=62 Identities=26% Similarity=0.381 Sum_probs=40.6
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+++.++|.+|+|||||+|.|..... .....+.. + .. + ...+.-++....+.|+|+||..+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~--~--~~--~---~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTV--F--DH--Y---AVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSS--C--CC--E---EEEEESSSCEEEEEEECCCCSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcc--c--ce--e---EEEEEECCEEEEEEEEECCCCcc
Confidence 457899999999999999999987642 22221111 1 11 1 11233355578899999999753
No 291
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.0011 Score=67.14 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=22.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc---CCCCCCeeecccCCc
Q psy91 102 LMVVGESGLGKSTLVNSLFL---SDLYGDRKVPNVNGS 136 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~---~~~~G~i~~~~~~G~ 136 (541)
+.|.||||+|||||+++|++ .+..|.+. ++|.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~---~~~~ 73 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLK---IDVR 73 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE---ecce
Confidence 58999999999999999943 56678888 6665
No 292
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.44 E-value=0.0019 Score=63.60 Aligned_cols=62 Identities=26% Similarity=0.293 Sum_probs=39.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSI 334 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~ 334 (541)
.+++.++|.+|+|||||+|.|.+....... -...++...... ++-++ ..+.++||||..+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~-------~~g~t~~~~~~~--~~~~~--~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGN-------WAGVTVERKEGQ--FSTTD--HQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEE-------CTTSSSEEEEEE--EECSS--CEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCC-------CCCeeEEEEEEE--EEeCC--CceEEEECcCCCccc
Confidence 368999999999999999999876421110 111223322222 22222 468899999987643
No 293
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.42 E-value=0.0018 Score=58.99 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.|.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4679999999999999999965
No 294
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.41 E-value=0.0032 Score=57.53 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=36.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.++++++|.+|+|||||+|.|...... .... .++...... +..+ ...+.|+|+||.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~--------~t~~~~~~~--~~~~--~~~~~l~Dt~G~ 77 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFN-EDMI--------PTVGFNMRK--ITKG--NVTIKLWDIGGQ 77 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCC--------CCCSEEEEE--EEET--TEEEEEEEECCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCC-CccC--------CCCceeEEE--EEeC--CEEEEEEECCCC
Confidence 478999999999999999999876522 1111 122222221 2222 577899999995
No 295
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.41 E-value=0.0013 Score=61.54 Aligned_cols=20 Identities=45% Similarity=0.801 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||||||||||.+.|+.
T Consensus 15 i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999943
No 296
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.41 E-value=0.0042 Score=56.08 Aligned_cols=61 Identities=25% Similarity=0.492 Sum_probs=36.3
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+.+.++|.+|+|||||+|.|....... .... ...+.......+. -+| ..+.++||||..+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~---~~~~---~~~t~~~~~~~~~--~~~--~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI---VTDI---AGTTRDVLREHIH--IDG--MPLHIIDTAGLREA 65 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC---CCSS---TTCCCSCEEEEEE--ETT--EEEEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce---eeCC---CCceeceeeEEEE--ECC--eEEEEEECCCcccc
Confidence 468899999999999999998654211 0111 1111112222222 233 34789999998653
No 297
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.41 E-value=0.00027 Score=80.74 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=82.4
Q ss_pred hhhhhhhhhccceeeEeccCCcch-------------hHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecC
Q psy91 251 QVHRKSVKKGFDFTLMVVGESGLG-------------KSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERG 317 (541)
Q Consensus 251 q~~~~~vk~g~~f~lmv~G~sg~G-------------KsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~g 317 (541)
|+...++.+.+.| +.-.|-++.+ +-.++..+.+..+..++.+..+|+|++|++.|++++..
T Consensus 465 q~~~ltV~e~l~f-~enl~l~~~~~~i~~~i~~ei~~Rl~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~----- 538 (993)
T 2ygr_A 465 EVCELSIADCADF-LNALTLGPREQAIAGQVLKEIRSRLGFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGS----- 538 (993)
T ss_dssp CSSHHHHHHHHHT-TTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTT-----
T ss_pred HHhhCCHHHHHHH-HHhcCCCHHHhHHHHHHHHHHHHHHHHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhh-----
Confidence 6667777777777 3333333311 12245555665544678889999999999999999865
Q ss_pred ee--eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhhhcccceeEEEc
Q psy91 318 VK--LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 318 v~--~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~~~l~~rvnvIp 387 (541)
+ +.++|+|||+.|.+..... .+.+.|......+.+++++.|+++.. ....++.++.
T Consensus 539 -~~~~~llILDEPTagLdp~~~~-----------~L~~~L~~Lr~~G~TVIvVeHdl~~i--~~ADrIi~Lg 596 (993)
T 2ygr_A 539 -GLVGVLYVLDEPSIGLHQRDNR-----------RLIETLTRLRDLGNTLIVVEHDEDTI--EHADWIVDIG 596 (993)
T ss_dssp -CCCSCEEEEECTTTTCCHHHHH-----------HHHHHHHHHHHTTCEEEEECCCHHHH--HTCSEEEEEC
T ss_pred -CCCCcEEEEeCcccCCCHHHHH-----------HHHHHHHHHHHcCCEEEEECCCHHHH--HhCCEEEEec
Confidence 5 4899999998887654432 56666666666789999999998753 3577888773
No 298
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.40 E-value=0.0014 Score=60.84 Aligned_cols=19 Identities=53% Similarity=0.847 Sum_probs=17.1
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|..
T Consensus 5 Vi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 6999999999999999943
No 299
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.38 E-value=0.0045 Score=56.72 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=37.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.++++|.+|+|||||+|.|...........+ ++.+....+ + +-...+.|+||||.-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--------t~~~~~~~~--~--~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--------TVGYNVETF--E--KGRVAFTVFDMGGAK 74 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCC--------CSSEEEEEE--E--ETTEEEEEEEECCSG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccc--------ccceeEEEE--E--eCCEEEEEEECCCCH
Confidence 467999999999999999999876632211111 222222222 1 226789999999973
No 300
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.37 E-value=0.00071 Score=74.35 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=31.0
Q ss_pred cccccccccceeecceEEE------EEEcCCCCCHHHHHHHHhc
Q psy91 84 TLPEQVHRKSVKKGFDFTL------MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 84 ~l~~~~~~~~iL~~isl~i------aIiGpSGsGKSTLL~~L~~ 121 (541)
+++.-||...+++.+++.+ +|+||||||||||+++|++
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3444567777888888776 9999999999999999944
No 301
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.37 E-value=0.0016 Score=66.22 Aligned_cols=25 Identities=24% Similarity=0.611 Sum_probs=0.0
Q ss_pred eecceEEE-----EEEcCCCCCHHHHHHHH
Q psy91 95 KKGFDFTL-----MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 95 L~~isl~i-----aIiGpSGsGKSTLL~~L 119 (541)
..+..+.+ +|+|||||||||||.+|
T Consensus 14 ~~~~~i~f~~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEEEEECCSEEEEEECCTTSSHHHHHHHH
T ss_pred ccCeEEcCCCCeEEEECCCCCCHHHHHHHH
No 302
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.36 E-value=0.00077 Score=72.62 Aligned_cols=77 Identities=8% Similarity=-0.004 Sum_probs=58.9
Q ss_pred CCCCCC-CCCCCcceEEeeeEEEeeecCeee--eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceee
Q psy91 291 RKVPNV-NDRQGKTTTIEKKSMDIEERGVKL--RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTI 367 (541)
Q Consensus 291 ~~~~~l-s~g~~q~v~I~~~~~~i~e~gv~~--~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i 367 (541)
..+..+ |+|++|++.|+++++. ++ +++|+|||..|-+..... .+.+.|.+..+ +.++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~------~~~~~~lilDEp~~gld~~~~~-----------~i~~~l~~~~~-~~~vi~ 453 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVL------GADTPSVVFDEVDAGIGGAAAI-----------AVAEQLSRLAD-TRQVLV 453 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHH------CCCSSEEEECSCSSSCCTHHHH-----------HHHHHHHHHHH-HSEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHh------CCCCCEEEEeCCcCCCCHHHHH-----------HHHHHHHHHhC-CCEEEE
Confidence 345667 9999999999998877 78 999999998886655443 55666666655 788999
Q ss_pred ccccchhhhhcccceeEEEc
Q psy91 368 EKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 368 ~~~~~di~~~~l~~rvnvIp 387 (541)
.+|+.++.. .+.++.++.
T Consensus 454 itH~~~~~~--~~d~~~~~~ 471 (517)
T 4ad8_A 454 VTHLAQIAA--RAHHHYKVE 471 (517)
T ss_dssp ECCCHHHHH--HSSEEEEEE
T ss_pred EecCHHHHH--hCCEEEEEe
Confidence 999988664 366777763
No 303
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.35 E-value=0.0014 Score=61.00 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|+|||||||+.+.|++
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 58999999999999999966
No 304
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.32 E-value=0.0054 Score=62.65 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.1
Q ss_pred eeEeccCCcchhHHHHhhhcccccC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLY 288 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~ 288 (541)
.+.|+|.+|+||||++|.|.+.+++
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~l 60 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFL 60 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcC
Confidence 6889999999999999999987643
No 305
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.31 E-value=0.0025 Score=58.17 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=42.2
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCC---CCCCCcceEEeeeEEEe-eecCeeeeEEEEcCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNV---NDRQGKTTTIEKKSMDI-EERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~l---s~g~~q~v~I~~~~~~i-~e~gv~~~L~I~DePg~G 331 (541)
...+++.++|.+|+|||||++.|.... .....+.. ......++.+......+ .-++...++.|+||||.-
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV--PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS--CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc--cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 346899999999999999998776432 11110000 01122344444333333 334557899999999964
No 306
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.29 E-value=0.0021 Score=58.09 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
..|+|+|++|||||||++.|.+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35699999999999999999654
No 307
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.28 E-value=0.0025 Score=61.03 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
.+.|+|+|++|+|||||++.|++..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4677999999999999999996643
No 308
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.28 E-value=0.0035 Score=58.39 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=39.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+.++++|.+|+|||||++.|..... .....+.. + ... ...+.-++....+.|+||||.-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~--~--~~~-----~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTV--F--DNF-----SANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSS--C--CCE-----EEEEECSSCEEEEEEECCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCcc--c--eeE-----EEEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999986552 22221111 1 111 1122334557899999999974
No 309
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.26 E-value=0.0063 Score=57.06 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=38.4
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
-.+.++++|.+|+|||||++.|...... .... .++.... ...+.-++....+.|+||||.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~--------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~ 85 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYV--------PTVFENY-TACLETEEQRVELSLWDTSGS 85 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCC--------CCSEEEE-EEEEEC--CEEEEEEEEECCS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcC--------CeeeeeE-EEEEEECCEEEEEEEEECCCC
Confidence 3578999999999999999999876522 2111 1222221 122333455788999999985
No 310
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.24 E-value=0.00067 Score=77.30 Aligned_cols=89 Identities=13% Similarity=0.127 Sum_probs=67.8
Q ss_pred HhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCee--eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhh
Q psy91 279 VNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK--LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFN 356 (541)
Q Consensus 279 in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~--~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~ 356 (541)
+..+.+..+..++.+..+|+|++|++.|++++.. + +.++|+|||+.|.+..... .+.+.|.
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~------~~~~~llILDEPTagLdp~~~~-----------~L~~~L~ 550 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGS------RLTGVLYVLDEPSIGLHQRDND-----------RLIATLK 550 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTT------CCCSCEEEEECTTTTCCGGGHH-----------HHHHHHH
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhh------CCCCCEEEEeCcccCCCHHHHH-----------HHHHHHH
Confidence 4555555444678889999999999999999865 5 4899999998887654433 5666677
Q ss_pred hhcccCcceeeccccchhhhhcccceeEEE
Q psy91 357 DENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 357 ~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
+....+.+++++.|+++.. ....++.++
T Consensus 551 ~Lr~~G~TVIvVeHdl~~i--~~ADrIi~L 578 (972)
T 2r6f_A 551 SMRDLGNTLIVVEHDEDTM--LAADYLIDI 578 (972)
T ss_dssp HHHTTTCEEEEECCCHHHH--HSCSEEEEE
T ss_pred HHHhCCCEEEEEecCHHHH--HhCCEEEEe
Confidence 7766789999999998753 356777776
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.22 E-value=0.0018 Score=60.53 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|+||||||||++.|.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 59999999999999999965
No 312
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.002 Score=61.40 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|++
T Consensus 28 ~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 28 EMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 8999999999999999954
No 313
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.20 E-value=0.0038 Score=56.89 Aligned_cols=60 Identities=35% Similarity=0.438 Sum_probs=32.8
Q ss_pred eeeEeccCCcchhHHHHhhhcccc-cCCCCCCCCCCCCCCcceEEeeeEEEee---ecCeeeeEEEEcCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSD-LYGDRKVPNVNDRQGKTTTIEKKSMDIE---ERGVKLRLTVVDTPGF 330 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~-~~~~~~~~~ls~g~~q~v~I~~~~~~i~---e~gv~~~L~I~DePg~ 330 (541)
+.+.++|.+|+|||||+|.|.... .+. +....++.+......+. .++-...+.++||||.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~--------~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL--------GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR 66 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------CSEEEEEEEC---------CEEEEEEECSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC--------CCcceeccEEeEEeeeccccCCCCceEEEEEecCCC
Confidence 678999999999999999998642 111 11112222222222211 1233678889999984
No 314
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.20 E-value=0.0024 Score=62.82 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=22.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCee
Q psy91 103 MVVGESGLGKSTLVNSLFLSDLYGDRK 129 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~~~~~G~i~ 129 (541)
+|+||||||||||+..|++....|.++
T Consensus 34 ~i~G~~GsGKTtl~~~l~~~~~~g~~~ 60 (279)
T 1nlf_A 34 ALVSPGGAGKSMLALQLAAQIAGGPDL 60 (279)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHTCCCT
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999996544456554
No 315
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.16 E-value=0.001 Score=66.38 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=29.7
Q ss_pred eeeecccccccccceeecceE---EE-EEEcCCCCCHHHHHHHHhc
Q psy91 80 IGFATLPEQVHRKSVKKGFDF---TL-MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 80 i~~~~l~~~~~~~~iL~~isl---~i-aIiGpSGsGKSTLL~~L~~ 121 (541)
+.++++++.|+... +++++ .+ +++|+|||||||++..|++
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--ceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45667777776543 45554 34 9999999999999999944
No 316
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.16 E-value=0.002 Score=59.22 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=17.8
Q ss_pred eeecceEEE-----EEEcCCCCCHHHHHHHHhc
Q psy91 94 VKKGFDFTL-----MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 94 iL~~isl~i-----aIiGpSGsGKSTLL~~L~~ 121 (541)
+++++++.. +|+|++|||||||++.+.+
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 566666544 9999999999999999954
No 317
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.16 E-value=0.0021 Score=59.81 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++|||||||.+.|+.
T Consensus 21 I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999943
No 318
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.14 E-value=0.0022 Score=57.56 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++||||||+.+.|+
T Consensus 4 i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999994
No 319
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.14 E-value=0.004 Score=62.03 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.1
Q ss_pred eeeEeccCCcchhHHHHhhhccccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDL 287 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~ 287 (541)
..+.|+|.+|+|||||+|.|.+..+
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3689999999999999999988764
No 320
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.12 E-value=0.0023 Score=58.57 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
++|+|+||||||||++.|+
T Consensus 9 i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 3899999999999999994
No 321
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.12 E-value=0.003 Score=63.07 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+|+|++|||||||++.|++.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4599999999999999999764
No 322
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.09 E-value=0.0027 Score=57.41 Aligned_cols=57 Identities=23% Similarity=0.469 Sum_probs=34.2
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+++.++|.+|+|||||+|.|..... . ...+ ++.+....+.+ + ..++.++|+||...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~-~-~~~~--------t~~~~~~~~~~--~--~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV-V-TTKP--------TIGFNVETLSY--K--NLKLNVWDLGGQTS 74 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE-E-EECS--------STTCCEEEEEE--T--TEEEEEEEEC----
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc-C-ccCC--------cCccceEEEEE--C--CEEEEEEECCCCHh
Confidence 57899999999999999999986543 1 1111 11111111221 2 47899999999853
No 323
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.08 E-value=0.0064 Score=59.96 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.3
Q ss_pred eeeEeccCCcchhHHHHhhhccccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDL 287 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~ 287 (541)
+.+.|+|.+|+|||||+|.|.+..+
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 4689999999999999999988764
No 324
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.05 E-value=0.0045 Score=57.42 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred eeeEeccCCcchhHHHHhhhcccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
+.+.++|.+|+|||||+|.|.+..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998654
No 325
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.03 E-value=0.0056 Score=57.02 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=37.0
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||++.|.... +..... ..+.... .+.+.. +-..++.|+||||..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~-------~~~~~~~--~~~~~~-~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQT-------SITDSSA--IYKVNN-NRGNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC-CCCBCC-------CCSCEEE--EEECSS-TTCCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cccccC-------CcceeeE--EEEecC-CCccEEEEEECCCCh
Confidence 5789999999999999999998765 222111 1111111 122221 114789999999974
No 326
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.03 E-value=0.0045 Score=56.90 Aligned_cols=56 Identities=21% Similarity=0.359 Sum_probs=34.6
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|...... . . ..|+.+....+. -+ ..++.|+||||..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~-~--------~~t~~~~~~~~~--~~--~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-T-T--------IPTIGFNVETVE--YK--NICFTVWDVGGQD 84 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-E-E--------EEETTEEEEEEE--ET--TEEEEEEECC---
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-c-c--------CCcCceeEEEEE--EC--CEEEEEEECCCCH
Confidence 478999999999999999999765421 1 0 112222222222 22 4789999999974
No 327
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.99 E-value=0.00083 Score=62.37 Aligned_cols=29 Identities=31% Similarity=0.276 Sum_probs=23.0
Q ss_pred ceeecce-----EEEEEEcCCCCCHHHHHHHHhc
Q psy91 93 SVKKGFD-----FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 93 ~iL~~is-----l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.++++++ +.|+|+|++|||||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3555554 3559999999999999999954
No 328
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.98 E-value=0.0028 Score=57.45 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=36.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.++++++|.+|+|||||+|.|..... ....+.. + +....+.+ + ..++.|+|+||..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~t~--~------~~~~~~~~--~--~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV--VHTSPTI--G------SNVEEIVI--N--NTRFLMWDIGGQE 76 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC--EEEECCS--S------SSCEEEEE--T--TEEEEEEEESSSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC--CccCCcC--c------eeeEEEEE--C--CEEEEEEECCCCH
Confidence 47899999999999999999987653 1111111 1 11111111 2 3789999999973
No 329
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.96 E-value=0.0043 Score=56.54 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=36.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+++.++|.+|+|||||+|.|....... ..+ ++.+....+.+ + ..++.++||||..
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--------t~~~~~~~~~~--~--~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVVT--TVP--------TVGVNLETLQY--K--NISFEVWDLGGQT 77 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCEE--ECS--------STTCCEEEEEE--T--TEEEEEEEECCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--cCC--------CCceEEEEEEE--C--CEEEEEEECCCCH
Confidence 5789999999999999999997654221 111 11111111221 1 5789999999974
No 330
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.93 E-value=0.0018 Score=57.70 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.3
Q ss_pred eeEeccCCcchhHHHHhhhccc
Q psy91 264 TLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~ 285 (541)
.+.+.|++|+||||+++.+...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999998764
No 331
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.93 E-value=0.0044 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5679999999999999999954
No 332
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.92 E-value=0.007 Score=60.47 Aligned_cols=61 Identities=26% Similarity=0.375 Sum_probs=38.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.++++|.+|+|||||+|.|+...... .+.....|+.+....+.+ .| ..++.|+|+||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~------~~~~~~~Ti~~~~~~~~~--~~-~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF------DTRRLGATIDVEHSHLRF--LG-NMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG------GGGGCCCCCSEEEEEEEE--TT-TEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc------cccCcCCccceEEEEEEe--CC-ceEEEEEECCCcH
Confidence 4678999999999999999988652110 011122344443333322 23 5789999999953
No 333
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.92 E-value=0.0053 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+++|++|||||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45699999999999999999543
No 334
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.92 E-value=0.0031 Score=62.66 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=24.4
Q ss_pred CCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 294 PNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 294 ~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
..+|+|+.+++.++..... +++++|+|++..|.+
T Consensus 133 ~~~sgGq~~R~~~a~~~~~------~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 133 KSQFKGEGDRCPTGQKIKL------PVDIFILEGWFLGFN 166 (290)
T ss_dssp TTHHHHTCEECSSCEEEES------SCSEEEEEESSTTCC
T ss_pred cccCCccccccccccceEc------CCCEEEEeCccccCC
Confidence 3468888888877644433 589999999966543
No 335
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.90 E-value=0.0011 Score=76.17 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=30.7
Q ss_pred eeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeeccccchhhh
Q psy91 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376 (541)
Q Consensus 319 ~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~~di~~ 376 (541)
++.|+|+||||.|-+....... ...+.+++.+ +.+.++++.+|+.++..
T Consensus 741 ~~sLlLLDEp~~GlD~~~~~~i-------~~~il~~l~~--~~g~~vl~aTH~~el~~ 789 (934)
T 3thx_A 741 KDSLIIIDELGRGTSTYDGFGL-------AWAISEYIAT--KIGAFCMFATHFHELTA 789 (934)
T ss_dssp TTCEEEEESCSCSSCHHHHHHH-------HHHHHHHHHH--TTCCEEEEEESCGGGGG
T ss_pred CCcEEEEeCCCCCCCHHHHHHH-------HHHHHHHHHh--cCCCEEEEEcCcHHHHH
Confidence 6899999999999775433211 0112222221 24678889999887654
No 336
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.90 E-value=0.0029 Score=60.52 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|.||+||||||+++.|.
T Consensus 29 i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3899999999999999993
No 337
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.89 E-value=0.005 Score=60.54 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=37.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.+.++|.+|+|||||+|.|.+........ . ..++ ......+ ++ ..++.++||||....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~----p---g~tv--~~~~~~~--~~-~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNW----P---GVTV--ERKSGLV--KK-NKDLEIQDLPGIYSM 62 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS----S---CCCC--SCEEEEC--TT-CTTEEEEECCCCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCC----C---CCcE--EEEEEEE--ec-CCeEEEEECCCcCcc
Confidence 3678999999999999999998754221111 1 1122 2222222 12 567999999997543
No 338
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.88 E-value=0.0035 Score=56.06 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHH
Q psy91 102 LMVVGESGLGKSTLVNSL 119 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L 119 (541)
|+|+||+||||||+.+.|
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 489999999999999999
No 339
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=95.87 E-value=0.0031 Score=65.99 Aligned_cols=65 Identities=32% Similarity=0.470 Sum_probs=37.3
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+-.+++.++|.+|+|||||+|.|........ +.....++ ......++-.+. .++.++||||+.+.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~------~~~~gtT~--d~~~~~~~~~~~-~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIV------SDYAGTTT--DPVYKSMELHPI-GPVTLVDTPGLDDV 96 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------------C--CCCEEEEEETTT-EEEEEEECSSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCcc------CCCCCeee--eeEEEEEEECCC-CeEEEEECcCCCcc
Confidence 3457899999999999999999987653111 11111122 222222222221 28999999999864
No 340
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.87 E-value=0.0024 Score=69.20 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc--CCCCC-Ce
Q psy91 102 LMVVGESGLGKSTLVNSLFL--SDLYG-DR 128 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~--~~~~G-~i 128 (541)
++|+|+||||||||+++|++ .+..| .+
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~~~~G~~i 401 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLMEMGGRCV 401 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHTTCSSCE
T ss_pred EEEECCCCChHHHHHHHHHHhhcccCCceE
Confidence 49999999999999999944 33444 45
No 341
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.85 E-value=0.0049 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356799999999999999999543
No 342
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.84 E-value=0.0095 Score=60.71 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.0
Q ss_pred eeeEeccCCcchhHHHHhhhccccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDL 287 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~ 287 (541)
..+.|+|.+|+|||||+|+|.+..+
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999987764
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.82 E-value=0.0038 Score=56.50 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+|+|||||||+.+.|+.
T Consensus 6 i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999954
No 344
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.82 E-value=0.0013 Score=74.36 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=67.9
Q ss_pred HHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeee--eEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhh
Q psy91 278 LVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL--RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYF 355 (541)
Q Consensus 278 ~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~--~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l 355 (541)
++..+.+..+..++.+..+|+|++|++.|++++.. ++ .++|+|||+.|.+..... .+.+.+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~------~p~~~llILDEPT~~Ld~~~~~-----------~L~~~l 424 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYS------NLFGVVYVLDEPSAGLHPADTE-----------ALLSAL 424 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTT------CCCSCEEEEECTTTTCCGGGHH-----------HHHHHH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhh------CCCCeEEEeeCccccCCHHHHH-----------HHHHHH
Confidence 45555555544677888999999999999999876 66 599999998876655443 556666
Q ss_pred hhhcccCcceeeccccchhhhhcccceeEEE
Q psy91 356 NDENRQGKTTTIEKKSMDIEERGVKLRLTVV 386 (541)
Q Consensus 356 ~~e~~~~rt~~i~~~~~di~~~~l~~rvnvI 386 (541)
......+.++++..|++++.. ...++.++
T Consensus 425 ~~L~~~G~TVIvVeHdl~~l~--~aD~ii~l 453 (842)
T 2vf7_A 425 ENLKRGGNSLFVVEHDLDVIR--RADWLVDV 453 (842)
T ss_dssp HHHHTTTCEEEEECCCHHHHT--TCSEEEEE
T ss_pred HHHHHcCCEEEEEcCCHHHHH--hCCEEEEe
Confidence 666667889999999998543 56777766
No 345
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.82 E-value=0.0096 Score=54.56 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=36.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+.+.++|.+|+|||||+|.|..... .. ..+ ++..... .+.-+| .++.++||||..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~-~~-~~~--------t~~~~~~--~~~~~~--~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRL-AT-LQP--------TWHPTSE--ELAIGN--IKFTTFDLGGHI 78 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCC-CC-CCC--------CCSCEEE--EEEETT--EEEEEEECCCSG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-Cc-ccc--------CCCCCeE--EEEECC--EEEEEEECCCCH
Confidence 5789999999999999999987652 11 111 1111112 222233 788999999975
No 346
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.82 E-value=0.0054 Score=59.25 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|++.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 467799999999999999999664
No 347
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.81 E-value=0.0039 Score=56.71 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+++.|..
T Consensus 8 i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999944
No 348
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.80 E-value=0.0045 Score=56.35 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=35.8
Q ss_pred cceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
-.+++.++|.+|+|||||+|.|...... . ..+ ++.+....+.+ + ..++.++||||..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~-~~~--------t~~~~~~~~~~--~--~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-H-TSP--------TIGSNVEEIVI--N--NTRFLMWDIGGQE 71 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-E-EEC--------CSCSSCEEEEE--T--TEEEEEEECCC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-c-CcC--------CCccceEEEEE--C--CEEEEEEECCCCH
Confidence 3578999999999999999999865422 1 111 11111111121 2 4789999999974
No 349
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.78 E-value=0.0056 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.|.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 56799999999999999999653
No 350
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.77 E-value=0.0056 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456799999999999999999543
No 351
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.77 E-value=0.0049 Score=60.28 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35699999999999999999654
No 352
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.76 E-value=0.0057 Score=54.03 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4569999999999999999954
No 353
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0057 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56799999999999999999653
No 354
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.75 E-value=0.0059 Score=54.71 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45699999999999999999653
No 355
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.75 E-value=0.0097 Score=59.28 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=34.8
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.++|.+|+|||||+|.|.......... ....+.. +....+..+ ..++.++||||+.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~------~~~tTr~--~~~gi~~~~--~~~i~~iDTpG~~ 67 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSR------KAQTTRH--RIVGIHTEG--AYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCC------CSSCCSS--CEEEEEEET--TEEEEEESSSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCC------CCCccee--eEEEEEEEC--CeeEEEEECcCCC
Confidence 47899999999999999998765321111 1111110 111111222 4578999999985
No 356
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.73 E-value=0.006 Score=64.86 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=28.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+++.++|.+|+|||||+|.|...+...... -...|.......+ .-+| ..+.|+||||+.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~------~~gtT~d~~~~~i--~~~g--~~l~liDT~G~~~ 293 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSH------MPGTTRDYIEECF--IHDK--TMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------------CEEE--EETT--EEEEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCC------CCCceEEEEEEEE--EECC--eEEEEEECCCCCc
Confidence 569999999999999999998764211111 1111222222222 2234 5799999999975
No 357
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.73 E-value=0.0059 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+++|++|||||||++.|.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46699999999999999999543
No 358
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.72 E-value=0.006 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
+.|+|+|++|||||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 567999999999999999995543
No 359
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.69 E-value=0.005 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 45689999999999999999643
No 360
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.69 E-value=0.0062 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356799999999999999999543
No 361
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.68 E-value=0.0061 Score=53.52 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+++|++|||||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45699999999999999999543
No 362
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.67 E-value=0.006 Score=54.15 Aligned_cols=22 Identities=55% Similarity=0.789 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3569999999999999999954
No 363
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.66 E-value=0.0019 Score=59.95 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=38.6
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.-.+++.++|.+|+|||||++.|..... .....+... ......+.-++....+.|+||||..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~---------~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVF---------DNYSANVMVDGKPVNLGLWDTAGQE 89 (204)
Confidence 3457899999999999999999886542 111111110 1111122234456788899999964
No 364
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.64 E-value=0.0063 Score=56.84 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=37.3
Q ss_pred ccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
+-.++++++|.+|+|||||+|.|..... ... . .....++.... ...++.++||||..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~-~~~-~----~~~~~~~~~~~---------~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV-RPT-V----VSQEPLSAADY---------DGSGVTLVDFPGHV 66 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC-CCB-C----CCSSCEEETTG---------GGSSCEEEECCCCG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCe-e----eecCceEEEEe---------eCceEEEEECCCcH
Confidence 3457899999999999999999987652 110 0 01111221111 25789999999984
No 365
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.63 E-value=0.0061 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.678 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 55699999999999999999643
No 366
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.61 E-value=0.0068 Score=55.79 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=36.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEee-ecCeeeeEEEEcCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIE-ERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~-e~gv~~~L~I~DePg~Gd 332 (541)
.+.++++|.+|+|||||++.++... .... ...+.......... .++....+.|+||||..+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM--SPNE--------TLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC--CGGG--------GGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC--CCcc--------eeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 5789999999999999999876532 1110 00111111111111 124468899999998643
No 367
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.0058 Score=55.78 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 56799999999999999999653
No 368
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.60 E-value=0.0071 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999543
No 369
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.58 E-value=0.0072 Score=54.62 Aligned_cols=24 Identities=42% Similarity=0.751 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999643
No 370
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.56 E-value=0.005 Score=62.78 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
..|+|+|++|||||||++.|++
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4569999999999999999954
No 371
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.56 E-value=0.0074 Score=53.34 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35679999999999999999954
No 372
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.56 E-value=0.0071 Score=54.91 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=35.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.+.++|.+|+|||||++.|..... .. . ..+..+....+. -+ ...+.++||||.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~-~~-~--------~~t~g~~~~~~~--~~--~~~l~i~Dt~G~ 70 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDI-SH-I--------TPTQGFNIKSVQ--SQ--GFKLNVWDIGGQ 70 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCC-EE-E--------EEETTEEEEEEE--ET--TEEEEEEECSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-Cc-c--------cCcCCeEEEEEE--EC--CEEEEEEECCCC
Confidence 47899999999999999999986531 10 0 011112222222 22 467889999985
No 373
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.55 E-value=0.0054 Score=56.57 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|+.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHH
Confidence 48999999999999999943
No 374
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0041 Score=56.78 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.3
Q ss_pred ceeeEeccCCcchhHHHHhhhcccc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSD 286 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~ 286 (541)
.+.++++|.+|+|||||+|.|....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998765
No 375
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.54 E-value=0.0073 Score=54.08 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56799999999999999999554
No 376
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.52 E-value=0.0069 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356799999999999999999653
No 377
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.52 E-value=0.0052 Score=57.45 Aligned_cols=19 Identities=37% Similarity=0.291 Sum_probs=18.0
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+||||||||||++.|++
T Consensus 24 ~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 24 QVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 8999999999999999976
No 378
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.52 E-value=0.0061 Score=62.63 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCCCCCCCCcceEE------eeeEEEeeecCee-eeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcce
Q psy91 293 VPNVNDRQGKTTTI------EKKSMDIEERGVK-LRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTT 365 (541)
Q Consensus 293 ~~~ls~g~~q~v~I------~~~~~~i~e~gv~-~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~ 365 (541)
+..+|+|+++++.+ ++++.. + ++++|+|||..|-+..... .+.++|.+..+ ..++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~------~~~~~lllDEp~~~LD~~~~~-----------~l~~~l~~~~~-~~~v 339 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIG------NRVECIILDEPTVYLDENRRA-----------KLAEIFRKVKS-IPQM 339 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHS------SCCSEEEEESTTTTCCHHHHH-----------HHHHHHHHCCS-CSEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEeCCCCcCCHHHHH-----------HHHHHHHHhcc-CCeE
Confidence 45689999998854 444443 6 8999999998876654443 45555555432 3568
Q ss_pred eeccccchhhhhcccceeEEEc
Q psy91 366 TIEKKSMDIEERGVKLRLTVVD 387 (541)
Q Consensus 366 ~i~~~~~di~~~~l~~rvnvIp 387 (541)
++.+|+.++. .+..++.++.
T Consensus 340 i~~th~~~~~--~~~d~~~~l~ 359 (371)
T 3auy_A 340 IIITHHRELE--DVADVIINVK 359 (371)
T ss_dssp EEEESCGGGG--GGCSEEEEEE
T ss_pred EEEEChHHHH--hhCCEEEEEE
Confidence 8889987643 4556666654
No 379
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.50 E-value=0.0058 Score=58.63 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q psy91 101 TLMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~ 120 (541)
.|+|+|||||||||+.+.|+
T Consensus 11 ~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45999999999999999994
No 380
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.48 E-value=0.0081 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35679999999999999988843
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.48 E-value=0.0061 Score=55.17 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|+.
T Consensus 7 i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 58999999999999999943
No 382
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.48 E-value=0.014 Score=59.58 Aligned_cols=61 Identities=28% Similarity=0.341 Sum_probs=37.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.++++|.+|+|||||+|.|.......... ...+..+.... +..+ ...+.++||||+.+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~-------~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASY-------PFTTRGINVGQ--FEDG--YFRYQIIDTPGLLDR 227 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECC-------TTCSSCEEEEE--EEET--TEEEEEEECTTTSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCC-------CCeeeceeEEE--EEec--CceEEEEeCCCcccc
Confidence 4689999999999999999998654211100 01111121111 1112 357899999998753
No 383
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.47 E-value=0.0048 Score=56.55 Aligned_cols=20 Identities=20% Similarity=0.591 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|+.
T Consensus 13 I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999954
No 384
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.47 E-value=0.0078 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5679999999999999999954
No 385
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.46 E-value=0.0085 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45679999999999999999954
No 386
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.45 E-value=0.0083 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356799999999999999999553
No 387
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.45 E-value=0.0067 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56799999999999999999654
No 388
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.44 E-value=0.0082 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.773 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.|.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5679999999999999999954
No 389
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.44 E-value=0.0099 Score=55.43 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=23.9
Q ss_pred cceeecceEEE-----EEEcCCCCCHHHHHHHHhcC
Q psy91 92 KSVKKGFDFTL-----MVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 92 ~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~~ 122 (541)
...+++.-+.+ +|+||||||||||...|+..
T Consensus 22 ~~~lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34566655555 99999999999999988543
No 390
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.43 E-value=0.013 Score=61.47 Aligned_cols=59 Identities=32% Similarity=0.357 Sum_probs=32.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
.+.++|.+|+|||||+|.|....... ..+. ..++.......++-+| .++.|+||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~---v~~~-----~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAI---VEDE-----EGVTRDPVQDTVEWYG--KTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC----------------------CCSEEEEEETT--EEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCce---ecCC-----CCCccceeeEEEEECC--eEEEEEECCCccc
Confidence 47899999999999999998654210 1111 1122222222222233 3578999999875
No 391
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.43 E-value=0.0061 Score=54.94 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=20.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
-.+.|+|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999999953
No 392
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.43 E-value=0.0086 Score=55.35 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=32.9
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+.+.++|.+|+|||||+|.|..... .. ..+ ++..... .+.-+| .++.++||||...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~-~~-~~~--------t~~~~~~--~~~~~~--~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRL-GQ-HVP--------TLHPTSE--ELTIAG--MTFTTFDLGGHIQ 81 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC--------C--------CCCCSCE--EEEETT--EEEEEEEECC---
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-Cc-cCC--------CCCceeE--EEEECC--EEEEEEECCCcHh
Confidence 5789999999999999999986542 11 111 1111111 122233 6889999999653
No 393
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.42 E-value=0.0065 Score=55.38 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|.|++||||||+.+.|+
T Consensus 6 I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999994
No 394
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.42 E-value=0.0075 Score=53.20 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 458999999999999999943
No 395
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.40 E-value=0.0089 Score=54.14 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35679999999999999999954
No 396
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.39 E-value=0.0068 Score=55.23 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++||||||+.+.|+
T Consensus 7 I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999994
No 397
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.38 E-value=0.0049 Score=59.69 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCee
Q psy91 102 LMVVGESGLGKSTLVNSLFLSDLYGDRK 129 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~~~~G~i~ 129 (541)
|.|+|+|||||||+.+.|+.....+.+.
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~ 62 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVI 62 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEE
Confidence 4899999999999999995433233444
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.38 E-value=0.0067 Score=57.02 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy91 101 TLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.|+|+|++||||||+.+.|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 459999999999999999954
No 399
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.38 E-value=0.0077 Score=54.71 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
+.|+|+|++|||||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 467999999999999999996543
No 400
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.37 E-value=0.0038 Score=67.29 Aligned_cols=68 Identities=6% Similarity=-0.166 Sum_probs=44.3
Q ss_pred CCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhhhhhhhhhhhhhhhhhhhcccCcceeecccc
Q psy91 292 KVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKS 371 (541)
Q Consensus 292 ~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~~i~~yI~~~~~~~l~~e~~~~rt~~i~~~~ 371 (541)
.+..+|+|+++++.++++... +++++|+| |..|-+..... ......+.+++....+.+.++++.+|+
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~------~p~llilD-p~~~Ld~~~~~------~~~~~~i~~ll~~l~~~g~tvilvsh~ 416 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDF------KPARIAID-SLSALARGVSN------NAFRQFVIGVTGYAKQEEITGLFTNTS 416 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTT------CCSEEEEE-CHHHHTSSSCH------HHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccccCCHHHHHHHHHHHHHhh------CCCEEEEc-ChHHHHhhCCh------HHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 345678888899888887765 89999999 95554332110 002224445555555567888888887
Q ss_pred c
Q psy91 372 M 372 (541)
Q Consensus 372 ~ 372 (541)
.
T Consensus 417 ~ 417 (525)
T 1tf7_A 417 D 417 (525)
T ss_dssp S
T ss_pred c
Confidence 6
No 401
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.37 E-value=0.0075 Score=54.64 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+|+|++|||||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4589999999999999999653
No 402
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.37 E-value=0.0088 Score=54.55 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|++.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999653
No 403
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.37 E-value=0.0086 Score=58.79 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45699999999999999999664
No 404
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.37 E-value=0.0031 Score=58.90 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++|||||||++.|.
T Consensus 3 I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4899999999999999994
No 405
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.36 E-value=0.007 Score=59.94 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+||||||||||.+.|+.
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999954
No 406
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.36 E-value=0.0071 Score=54.55 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|.|+|++||||||+.+.|..
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 48999999999999999954
No 407
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.35 E-value=0.0096 Score=53.44 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467799999999999999999543
No 408
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.34 E-value=0.021 Score=56.86 Aligned_cols=60 Identities=27% Similarity=0.400 Sum_probs=39.8
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+++.++|.+|+|||||++.|....+.. ...+ ++. ......+.-++....+.|+||||..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~-~~~~--------t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIP--------TVF-DNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC-SCCC--------CSE-EEEEEEEEETTEEEEEEEEEECCCG
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCc-ccCC--------ccc-ceeEEEEEECCEEEEEEEEeCCCch
Confidence 3689999999999999999998665322 1111 111 1112223446667889999999963
No 409
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.33 E-value=0.0097 Score=53.66 Aligned_cols=23 Identities=43% Similarity=0.827 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46679999999999999999954
No 410
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.33 E-value=0.0007 Score=63.53 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=79.9
Q ss_pred HHHhCCCCccchhhhhhhccccccCC--CCcCCCCCCCCCCCCCeeEeeccc-hhhhhhhhhccceeeEeccC---Ccch
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGD--RKVPNVNEKGSIPYSDIGFATLPE-QVHRKSVKKGFDFTLMVVGE---SGLG 274 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~--~~i~~~~~~~~~~~~~vG~~~~~~-q~~~~~vk~g~~f~lmv~G~---sg~G 274 (541)
+.++|.+|+||||+.+.+.|+.+.-. ..+.... ........+||.+|.. .+...++.+++.+...+.+. .|..
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~ 101 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA-PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTL 101 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSC-CCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhhCCceEEcccccccC-CcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCc
Confidence 55689999999999999999875110 1111100 0112245789999886 56667777776554434331 1222
Q ss_pred hHH---HHhhh----------cccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCCccchhhhh
Q psy91 275 KST---LVNSL----------FLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWR 341 (541)
Q Consensus 275 KsT---~in~L----------~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~~~~~~~~~ 341 (541)
+.. .+... .+.. +.+..+..+| +++. ++.+.++|+|..|.....
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~lS-----------~l~~------~p~~~~LDep~~~l~~~~----- 158 (207)
T 1znw_A 102 AQPVRAAAATGVPVLIEVDLAGARA-IKKTMPEAVT-----------VFLA------PPSWQDLQARLIGRGTET----- 158 (207)
T ss_dssp HHHHHHHHHHTCCEEEECCHHHHHH-HHHHCTTSEE-----------EEEE------CSCHHHHHHHHHTTSCSC-----
T ss_pred HHHHHHHHHcCCeEEEEeCHHHHHH-HHHhcCCcEE-----------EEEE------CCCHHHHHHHHHhcCCCC-----
Confidence 221 12211 1111 1112222222 4444 788889999944432111
Q ss_pred hhhhhhhhhhhhhhhhhcc-cCcceeeccccchhh
Q psy91 342 ACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIE 375 (541)
Q Consensus 342 ~i~~yI~~~~~~~l~~e~~-~~rt~~i~~~~~di~ 375 (541)
...+..++.+++.+..+ .+.++++.+|+++..
T Consensus 159 --d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~ 191 (207)
T 1znw_A 159 --ADVIQRRLDTARIELAAQGDFDKVVVNRRLESA 191 (207)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHH
T ss_pred --HHHHHHHHHHHHHHHhhhccCcEEEECCCHHHH
Confidence 11233355666666543 477889999987644
No 411
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.01 Score=53.24 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=21.6
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+-.+.|+|+|++|||||||++.|.+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567799999999999999999543
No 412
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.32 E-value=0.0091 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+|+|++||||||+.+.|+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4699999999999999999654
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.32 E-value=0.0098 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356799999999999999999543
No 414
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.30 E-value=0.0099 Score=54.02 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+++|++|||||||++.|++.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56799999999999999999543
No 415
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.30 E-value=0.0077 Score=54.77 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
++|+|+||||||||+..|+
T Consensus 7 i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999883
No 416
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.28 E-value=0.017 Score=52.99 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=36.5
Q ss_pred ceeeEeccCCcchhHHHHhhhccccc-CCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDL-YGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~-~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
.+.+.++|.+|+|||||+|.|..... +.... + ...... .. ..+.-+|....+.++||+|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~----~~~~~~--~~--~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-E----VLGEDT--YE--RTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-----G----GGCTTE--EE--EEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-c----ccceeE--EE--EEEEECCeEEEEEEEEeccCc
Confidence 47899999999999999999975331 11111 0 011111 11 122335667888999999754
No 417
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.28 E-value=0.01 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|+|||||++.+.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4669999999999999999954
No 418
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.27 E-value=0.0088 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.|.+
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4569999999999999999954
No 419
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.27 E-value=0.0075 Score=58.47 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+||||||||||.+.|+.
T Consensus 4 i~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 38999999999999999954
No 420
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.25 E-value=0.013 Score=53.36 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=24.1
Q ss_pred cceeecceEEE-----EEEcCCCCCHHHHHHHHhc
Q psy91 92 KSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 92 ~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~ 121 (541)
+..+++.-+.+ +|.|+||+|||||.-.|..
T Consensus 4 ~~~lHas~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44567766666 8999999999999988844
No 421
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.023 Score=53.45 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=37.7
Q ss_pred cceeeEeccCCcchhHHHHhhhccccc-CCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCC
Q psy91 261 FDFTLMVVGESGLGKSTLVNSLFLSDL-YGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFG 331 (541)
Q Consensus 261 ~~f~lmv~G~sg~GKsT~in~L~~~~~-~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~G 331 (541)
..+.+.++|.+|+|||||+|.|..... +.... +. .+ .. .... .+.-+|....+.++||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~--~g--~d--~~~~--~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EV--LG--ED--TYER--TLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC------CC--TT--EEEE--EEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-Cc--cc--ee--eEEE--EEEECCeeeEEEEeecCCCc
Confidence 347899999999999999999875331 11111 10 01 11 1111 22335667889999999753
No 422
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.24 E-value=0.0076 Score=54.93 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++||||||+.+.|.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999994
No 423
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.24 E-value=0.012 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.|++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34699999999999999999764
No 424
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.24 E-value=0.0097 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356799999999999999999543
No 425
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.24 E-value=0.008 Score=54.57 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+|++||||||+.+.|+
T Consensus 14 i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4799999999999999994
No 426
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.23 E-value=0.011 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356799999999999999999543
No 427
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.22 E-value=0.011 Score=53.75 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456799999999999999988543
No 428
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.21 E-value=0.0027 Score=68.35 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=21.7
Q ss_pred eeecceEEE-----EEEcCCCCCHHHHHHHH
Q psy91 94 VKKGFDFTL-----MVVGESGLGKSTLVNSL 119 (541)
Q Consensus 94 iL~~isl~i-----aIiGpSGsGKSTLL~~L 119 (541)
.++++++.+ +|+|+|||||||||.+|
T Consensus 50 ~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl 80 (517)
T 4ad8_A 50 TITQLELELGGGFCAFTGETGAGKSIIVDAL 80 (517)
T ss_dssp TBSCEEEECCCSEEEEEESHHHHHHHHTHHH
T ss_pred ceeeEEEecCCCeEEEEcCCCCCHHHHHHHH
Confidence 345566655 99999999999999999
No 429
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.011 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.656 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456799999999999999999543
No 430
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.21 E-value=0.011 Score=53.28 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35669999999999999999953
No 431
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.19 E-value=0.01 Score=54.68 Aligned_cols=23 Identities=52% Similarity=0.700 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 46779999999999999999953
No 432
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.19 E-value=0.0058 Score=61.15 Aligned_cols=19 Identities=47% Similarity=0.594 Sum_probs=17.7
Q ss_pred EEEcCCCCCHHHHHHHHhc
Q psy91 103 MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 103 aIiGpSGsGKSTLL~~L~~ 121 (541)
+|+|||||||||++..|++
T Consensus 108 ~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEEcCCCChHHHHHHHHHH
Confidence 9999999999999999954
No 433
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.19 E-value=0.0085 Score=54.56 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+||+||||||+.+.|+
T Consensus 8 i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999994
No 434
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.19 E-value=0.011 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999543
No 435
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.18 E-value=0.012 Score=53.20 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.3
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
-.+.|+|+|++|||||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467799999999999999999653
No 436
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.15 E-value=0.011 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456799999999999999999543
No 437
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.15 E-value=0.0085 Score=55.52 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.8
Q ss_pred eEeccCCcchhHHHHhhhcc
Q psy91 265 LMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~ 284 (541)
+.++|.+|+||||+++.|..
T Consensus 4 i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHh
Confidence 67899999999999998864
No 438
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.14 E-value=0.012 Score=56.98 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 456799999999999999999653
No 439
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.011 Score=54.06 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|||||||++.|.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 5679999999999999999954
No 440
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.14 E-value=0.012 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456799999999999999999543
No 441
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.13 E-value=0.013 Score=54.01 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356799999999999999999654
No 442
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.13 E-value=0.011 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356799999999999999999553
No 443
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.13 E-value=0.0092 Score=54.54 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 48999999999999999943
No 444
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.11 E-value=0.011 Score=59.24 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=27.0
Q ss_pred ccccceeecceEEE-----EEEcCCCCCHHHHHHHHhc
Q psy91 89 VHRKSVKKGFDFTL-----MVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 89 ~~~~~iL~~isl~i-----aIiGpSGsGKSTLL~~L~~ 121 (541)
+.....+++..+.+ +|+|+||+|||||...|..
T Consensus 129 ~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 129 LARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHh
Confidence 34456788887777 9999999999999999854
No 445
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.09 E-value=0.013 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45679999999999999999954
No 446
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.09 E-value=0.028 Score=59.11 Aligned_cols=70 Identities=27% Similarity=0.221 Sum_probs=41.0
Q ss_pred eEeccCCcchhHHHHhhhcccc-------cCC-----CCCCCCCCCCCCcceEEeeeE--EEee-ecCeeeeEEEEcCCC
Q psy91 265 LMVVGESGLGKSTLVNSLFLSD-------LYG-----DRKVPNVNDRQGKTTTIEKKS--MDIE-ERGVKLRLTVVDTPG 329 (541)
Q Consensus 265 lmv~G~sg~GKsT~in~L~~~~-------~~~-----~~~~~~ls~g~~q~v~I~~~~--~~i~-e~gv~~~L~I~DePg 329 (541)
+-|+|..++|||||+|.|++.. .+. ......-.+....|..|-... +.+. .+|-+..++++||||
T Consensus 70 VsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG 149 (447)
T 3q5d_A 70 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQG 149 (447)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCc
Confidence 5689999999999999998641 000 001111112233344443321 1111 245578899999999
Q ss_pred CCCCc
Q psy91 330 FGDSI 334 (541)
Q Consensus 330 ~Gd~~ 334 (541)
+++..
T Consensus 150 ~~~~~ 154 (447)
T 3q5d_A 150 TFDSQ 154 (447)
T ss_dssp CCSSH
T ss_pred ccccc
Confidence 98774
No 447
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.08 E-value=0.01 Score=62.67 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=34.1
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+.++|.+|+|||||+|.|.......- .+ ...++..+....++.. ...+.|+||||+.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v---~~-----~~g~t~~~~~~~~~~~--~~~~~liDT~G~~~ 83 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIV---ED-----TPGVTRDRIYSSAEWL--NYDFNLIDTGGIDI 83 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-------------------CEEEECTTC--SSCCEEECCCC---
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCccc---CC-----CCCcceeEEEEEEEEC--CceEEEEECCCCCC
Confidence 4689999999999999999987652111 00 0112222222232223 35789999999874
No 448
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.07 E-value=0.0092 Score=54.54 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|.|+|++||||||+.+.|+
T Consensus 8 I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999994
No 449
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.06 E-value=0.013 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 35679999999999999999954
No 450
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.05 E-value=0.013 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456799999999999999999553
No 451
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.05 E-value=0.012 Score=54.15 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456799999999999999999543
No 452
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.05 E-value=0.0034 Score=63.55 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.+.||+|+|||||+++++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 38999999999999999944
No 453
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.02 E-value=0.0094 Score=61.13 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|+|+|++|||||||++.|.+.
T Consensus 182 V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 599999999999999999654
No 454
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.02 E-value=0.014 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.648 Sum_probs=21.3
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+-.+.|+|+|++|+|||||++.|.+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34467799999999999999999553
No 455
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.01 E-value=0.014 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.8
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
=.+.|+|+|++|+|||||++.|.+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHc
Confidence 346779999999999999999954
No 456
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.012 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=20.7
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
-.+.|+|+|++|+|||||++.|.+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhc
Confidence 345679999999999999999954
No 457
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.99 E-value=0.0012 Score=68.83 Aligned_cols=125 Identities=12% Similarity=0.078 Sum_probs=70.5
Q ss_pred HHHhCCCCccchhhhhhhccccccCCCCcCCCCCCCCCCCCCeeEeeccchhhhhhhhhccceeeEeccCCcchhHHHHh
Q psy91 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVN 280 (541)
Q Consensus 201 L~~vGL~g~~ks~l~~~l~gl~~~~~~~i~~~~~~~~~~~~~vG~~~~~~q~~~~~vk~g~~f~lmv~G~sg~GKsT~in 280 (541)
+.++|.+|+||||+.+.+.|+..+..+.+...+.+.. ..|+.++.......++.+...+ |....-...+++
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t----~~~~v~q~~~~~~ltv~D~~g~-----~~~~~~~~~~L~ 142 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT----MERHPYKHPNIPNVVFWDLPGI-----GSTNFPPDTYLE 142 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC--------CCCEEEECSSCTTEEEEECCCG-----GGSSCCHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc----eeEEeccccccCCeeehHhhcc-----cchHHHHHHHHH
Confidence 4568999999999999999999987776643322211 1255555432223333332211 111111245566
Q ss_pred hhcccccCCCCCCCCCCCC--CCcceEEeeeEEEeeec----CeeeeEEEEcCCCCCCCccch
Q psy91 281 SLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEER----GVKLRLTVVDTPGFGDSINSE 337 (541)
Q Consensus 281 ~L~~~~~~~~~~~~~ls~g--~~q~v~I~~~~~~i~e~----gv~~~L~I~DePg~Gd~~~~~ 337 (541)
.+.+.+. +..+. +|+| ++|++.|++++...... -.+++++++|||..|.+....
T Consensus 143 ~~~L~~~--~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~ 202 (413)
T 1tq4_A 143 KMKFYEY--DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDK 202 (413)
T ss_dssp HTTGGGC--SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCH
T ss_pred HcCCCcc--CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHH
Confidence 5554431 12222 7888 88888887765331000 005778899999777655443
No 458
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.97 E-value=0.011 Score=54.31 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|.|++||||||+.+.|.
T Consensus 3 I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999994
No 459
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.014 Score=54.23 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45679999999999999999954
No 460
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.96 E-value=0.015 Score=53.44 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35679999999999999999964
No 461
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.96 E-value=0.016 Score=57.85 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLSD 123 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~~ 123 (541)
.+.|||+|++|||||||++.|.+..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567999999999999999997643
No 462
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.95 E-value=0.016 Score=60.91 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=30.6
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
..+.++|.+|+|||||+|.|....... ..+ .. .++..+....++-+| .++.|+||||...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~---v~~---~~--g~T~d~~~~~~~~~~--~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI---VED---TP--GVTRDRIYSSAEWLN--YDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-------------------CEEEECTTCS--SCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee---ecC---CC--CCccceEEEEEEECC--ceEEEEECCCCCC
Confidence 468899999999999999998765211 111 01 122222222222233 4789999999863
No 463
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.95 E-value=0.014 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|||||||++.|.+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35679999999999999999954
No 464
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.94 E-value=0.011 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q psy91 101 TLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 101 ~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.|+++|++|||||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999999653
No 465
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.015 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46699999999999999999543
No 466
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.93 E-value=0.0094 Score=59.31 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
++|+|||||||||++..|++
T Consensus 108 i~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 39999999999999999954
No 467
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.93 E-value=0.013 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56799999999999999999543
No 468
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.92 E-value=0.015 Score=56.54 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|||||||++.|.+.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46799999999999999999653
No 469
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.91 E-value=0.0078 Score=63.76 Aligned_cols=61 Identities=26% Similarity=0.428 Sum_probs=31.8
Q ss_pred eeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
+++.++|.+|+|||||+|.|...+.......+ + .+..+....+. -+| ..+.|+||||+.+.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~----g--tT~d~~~~~i~--~~g--~~v~liDT~G~~~~ 285 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP----G--TTRDVVESQLV--VGG--IPVQVLDTAGIRET 285 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCT----T--CCHHHHHHEEE--ETT--EEEEECC-------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCC----C--eeEEEEEEEEE--ECC--EEEEEEECCccccc
Confidence 46999999999999999999876522111111 1 11111111111 233 46799999998653
No 470
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.91 E-value=0.013 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q psy91 100 FTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~ 121 (541)
+.|+|+|++|+|||||++.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999999954
No 471
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=94.90 E-value=0.022 Score=59.83 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.5
Q ss_pred ceeeEeccCCcchhHHHHhhhcc
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFL 284 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~ 284 (541)
.+++.++|..+.|||||+|.|..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999943
No 472
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.90 E-value=0.015 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456799999999999999999543
No 473
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.90 E-value=0.014 Score=53.98 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356799999999999999999543
No 474
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.90 E-value=0.017 Score=61.42 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.3
Q ss_pred ccceeeEeccCCcchhHHHHhhhccc
Q psy91 260 GFDFTLMVVGESGLGKSTLVNSLFLS 285 (541)
Q Consensus 260 g~~f~lmv~G~sg~GKsT~in~L~~~ 285 (541)
.-.+++.++|..+.|||||+|.|...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999998643
No 475
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.90 E-value=0.017 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356799999999999999999653
No 476
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.90 E-value=0.014 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.|.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56799999999999999999653
No 477
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.90 E-value=0.016 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHh
Confidence 45679999999999999999954
No 478
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.88 E-value=0.011 Score=55.19 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q psy91 102 LMVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~ 120 (541)
|+|+||+||||||+.+.|+
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999993
No 479
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.014 Score=52.97 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=21.5
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.-.+.|+|+|++|||||||++.|.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999999964
No 480
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.85 E-value=0.0079 Score=63.21 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=37.4
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+++.++|.+|+|||||+|.|...+...... .. .+........++-+| .++.|+||||..+.
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~---~~-----gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSN---VA-----GTTRDAVDTSFTYNQ--QEFVIVDTAGMRKK 236 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------------CCEEEEETT--EEEEETTHHHHTCB
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecC---CC-----CceeeeeEEEEEECC--eEEEEEECCCcCcC
Confidence 4789999999999999999998765221111 01 111122222233344 35899999998654
No 481
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.85 E-value=0.015 Score=57.05 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|.+|||||||++.|.+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46799999999999999999664
No 482
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.021 Score=58.64 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=39.0
Q ss_pred hccceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCC
Q psy91 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332 (541)
Q Consensus 259 ~g~~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd 332 (541)
+.-...+.++|.+++|||||+|.|.+...... .-...|+......+. -. ..++.++|+||+-.
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~-------~~pftT~~~~~g~~~--~~--~~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAA-------EYEFTTLVTVPGVIR--YK--GAKIQMLDLPGIID 131 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGG-------GTCSSCCCEEEEEEE--ET--TEEEEEEECGGGCC
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCccc-------CCCCceeeeeeEEEE--eC--CcEEEEEeCCCccC
Confidence 33345788999999999999999987652111 111222222222222 22 46789999999854
No 483
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.84 E-value=0.017 Score=54.55 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.8
Q ss_pred cceEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 97 GFDFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 97 ~isl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.-.+.|+|+|++|+|||||++.|.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999653
No 484
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.84 E-value=0.015 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.643 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456799999999999999999543
No 485
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.83 E-value=0.017 Score=62.54 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.4
Q ss_pred eeeEeccCCcchhHHHHhhhccccc
Q psy91 263 FTLMVVGESGLGKSTLVNSLFLSDL 287 (541)
Q Consensus 263 f~lmv~G~sg~GKsT~in~L~~~~~ 287 (541)
+.++|+|..|+|||||+|.|.....
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5789999999999999999998764
No 486
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.82 E-value=0.014 Score=58.84 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=34.7
Q ss_pred ceeeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCC
Q psy91 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGF 330 (541)
Q Consensus 262 ~f~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~ 330 (541)
.+.+.++|.+|+|||||+|.|........ ..|+.+.... ++.+ ..++.|+||||.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~----------~pT~~~~~~~--~~~~--~~~l~i~Dt~G~ 219 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVET--VEYK--NISFTVWDVGGQ 219 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEE----------EEETTEEEEE--EEET--TEEEEEEECC--
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCc----------ccccceEEEE--EecC--cEEEEEEECCCC
Confidence 46899999999999999999976542110 1122222222 2222 468999999994
No 487
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.82 E-value=0.012 Score=55.04 Aligned_cols=20 Identities=40% Similarity=0.381 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q psy91 102 LMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~ 121 (541)
|+|+|++||||||+.+.|..
T Consensus 28 i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999944
No 488
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.81 E-value=0.018 Score=59.02 Aligned_cols=59 Identities=27% Similarity=0.281 Sum_probs=33.9
Q ss_pred eeEeccCCcchhHHHHhhhcccccCCCCCCCCCCCCCCcceEEeeeEEEeeecCeeeeEEEEcCCCCCCC
Q psy91 264 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDS 333 (541)
Q Consensus 264 ~lmv~G~sg~GKsT~in~L~~~~~~~~~~~~~ls~g~~q~v~I~~~~~~i~e~gv~~~L~I~DePg~Gd~ 333 (541)
.+.++|.+|+|||||+|.|.......... ...|.......+ .-+| ..+.++||||+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~-------~~~T~d~~~~~i--~~~g--~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTK-------LFTTMSPKRYAI--PINN--RKIMLVDTVGFIRG 239 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------------CCSCEEEE--EETT--EEEEEEECCCBCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCC-------cccccCCEEEEE--EECC--EEEEEEeCCCchhc
Confidence 38899999999999999998765211111 111111111222 2233 46789999998654
No 489
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.81 E-value=0.013 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.+.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35679999999999999999954
No 490
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.79 E-value=0.016 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.0
Q ss_pred ecceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 96 KGFDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 96 ~~isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
....+.|+|+|++|||||||++.+.+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHh
Confidence 34556789999999999999999954
No 491
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.79 E-value=0.019 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
..|+|+|++|||||||++.|.+.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35699999999999999999553
No 492
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.78 E-value=0.01 Score=55.37 Aligned_cols=24 Identities=25% Similarity=0.728 Sum_probs=20.9
Q ss_pred ceEEEEEEcCCCCCHHHHHHHHhc
Q psy91 98 FDFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 98 isl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
..+.|+|+|++|||||||++.|.+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456779999999999999999964
No 493
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.78 E-value=0.016 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 356799999999999999999543
No 494
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.78 E-value=0.014 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q psy91 100 FTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 100 l~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
+.|+|+|++|+|||||++.|.+.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45799999999999999999553
No 495
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.77 E-value=0.016 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFL 121 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~ 121 (541)
.+.|+|+|++|+|||||++.|.+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46779999999999999999954
No 496
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.76 E-value=0.018 Score=56.23 Aligned_cols=24 Identities=42% Similarity=0.742 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+++|++|+|||||++.|++.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 467799999999999999999654
No 497
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.76 E-value=0.0027 Score=64.85 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=17.8
Q ss_pred EE-EEEcCCCCCHHHHHHHHh
Q psy91 101 TL-MVVGESGLGKSTLVNSLF 120 (541)
Q Consensus 101 ~i-aIiGpSGsGKSTLL~~L~ 120 (541)
.+ .|.||+|||||||+..++
T Consensus 62 ~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 44 899999999999999993
No 498
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.76 E-value=0.016 Score=53.57 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|||||||++.|.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356799999999999999999543
No 499
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.74 E-value=0.013 Score=54.01 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q psy91 102 LMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 102 iaIiGpSGsGKSTLL~~L~~~ 122 (541)
|+|+|++||||||+.+.|...
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999543
No 500
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.72 E-value=0.017 Score=56.07 Aligned_cols=24 Identities=46% Similarity=0.742 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q psy91 99 DFTLMVVGESGLGKSTLVNSLFLS 122 (541)
Q Consensus 99 sl~iaIiGpSGsGKSTLL~~L~~~ 122 (541)
.+.|+|+|++|+|||||++.|++.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 467799999999999999999764
Done!