RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy91
(541 letters)
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 222 bits (567), Expect = 3e-67
Identities = 112/325 (34%), Positives = 164/325 (50%), Gaps = 41/325 (12%)
Query: 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300
+GFA LP QV+RKSVK+GF+FTLMVVGESGLGKSTL+NSLFL+DLY + P + R
Sbjct: 10 GYVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLY-SPEYPGPSHRI 68
Query: 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR 360
KT +E+ + I+E GV+L LT+VDTPGFGD++++ W+ YID +F Y N E+R
Sbjct: 69 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESR 128
Query: 361 QGKTTTIEK----------------KSMDIE-ERGVKLRLTVVDTPGFGDSINSEE---- 399
+ + K +DIE + + ++ ++ D++ EE
Sbjct: 129 VNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQF 188
Query: 400 ---SWRACCSY---IDDQFRQYFNDESGLNRKNIVDNRFATNRHRNNAPTPS-------- 445
+ + I + +E+ L +K A
Sbjct: 189 KKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQY 248
Query: 446 -----QVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLK 500
+VEN +H DF LRNMLI THMQDLKDVT +VHYEN+R++ L+ ++ G
Sbjct: 249 PWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKN 308
Query: 501 KDSAPDGLITETDRLLLEKDEELVK 525
K + + + E ++ K
Sbjct: 309 KGQLTKSPLAQMEEERREHVAKMKK 333
Score = 88.0 bits (217), Expect = 7e-19
Identities = 39/47 (82%), Positives = 45/47 (95%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 125
Y+GFA LP QV+RKSVK+GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 11 YVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLY 57
Score = 34.4 bits (78), Expect = 0.097
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 130 VPNVNGSNTVIEVAGTKVRGRQYPWGVVE 158
V GSNT+IEV G +VRGRQYPWGV E
Sbjct: 226 PLAVVGSNTIIEVNGKRVRGRQYPWGVAE 254
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 218 bits (557), Expect = 8e-66
Identities = 90/327 (27%), Positives = 141/327 (43%), Gaps = 49/327 (14%)
Query: 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300
+GF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF +
Sbjct: 21 GHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE-----GEPATHT 75
Query: 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE-- 358
++ + D++E V+L+LT+V T GFGD IN E+S++ +ID QF Y +E
Sbjct: 76 QPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELK 135
Query: 359 -NRQGKT---------------TTIEKKSMDIE-ERGVKLRLTVVDTPGFGDSINSEESW 401
R T T KS+D+ + + ++ ++ D+I+ E
Sbjct: 136 IRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELT 195
Query: 402 RACCSYIDD---------QFRQYFNDESGLNRKNIVDNRFA-------------TNRHRN 439
+ + QF + +N FA R R
Sbjct: 196 KFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMRARQ 255
Query: 440 NAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKL 499
QVEN H DF KLR MLI +M+DL++ T HYE +R L ++ +
Sbjct: 256 YPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDS 315
Query: 500 KKDS---APDGLITETDRLLLEKDEEL 523
K S + E L +K+EE+
Sbjct: 316 KPFSLQETYEAKRNEFLGELQKKEEEM 342
Score = 89.8 bits (222), Expect = 2e-19
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD-----RKVPNV 133
++GF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF + G+ + +
Sbjct: 22 HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQL 81
Query: 134 NGSNTVIEVAGTKVR 148
+ ++ + +++
Sbjct: 82 QSNTYDLQESNVRLK 96
Score = 89.0 bits (220), Expect = 4e-19
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 178 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD 226
++GF +LP+Q+ KSV +GF F ++ VGE+GLGKSTL+++LF + G+
Sbjct: 22 HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE 70
Score = 36.3 bits (83), Expect = 0.024
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 133 VNGSNTVIEVAGTKVRGRQYPWGVVE 158
V GS +++ +R RQYPWG V+
Sbjct: 237 VIGSTEELKIGNKMMRARQYPWGTVQ 262
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 214 bits (546), Expect = 1e-65
Identities = 114/300 (38%), Positives = 164/300 (54%), Gaps = 44/300 (14%)
Query: 246 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT 305
+ LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R + ++ +T
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQ 61
Query: 306 IEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE---NRQG 362
IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DE NR+
Sbjct: 62 IEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRH 121
Query: 363 KT-------------TTIEKKSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWR------ 402
K +D+ + + ++ +V D++ +E R
Sbjct: 122 IIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRIL 181
Query: 403 ACCSYIDDQFRQYFNDESGLNRKNIVDNRFATNRHRNNAPTPSQ---------------- 446
+ + + ES + R + +Q
Sbjct: 182 DEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPW 241
Query: 447 ----VENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKD 502
VENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L + ++ + + KD
Sbjct: 242 GVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKD 300
Score = 87.9 bits (217), Expect = 2e-19
Identities = 38/50 (76%), Positives = 44/50 (88%)
Query: 83 ATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 132
+ LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +
Sbjct: 2 SNLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISG 51
Score = 32.1 bits (72), Expect = 0.36
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 132 NVNGSNTVIEVAGTKVRGRQYPWGVVE 158
+V GSN +IE G KVRGR YPWGVVE
Sbjct: 219 SVVGSNQLIEAKGKKVRGRLYPWGVVE 245
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 208 bits (530), Expect = 2e-62
Identities = 123/326 (37%), Positives = 175/326 (53%), Gaps = 55/326 (16%)
Query: 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300
+GFA LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P ++
Sbjct: 16 GYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKI 75
Query: 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDE-- 358
+T IE +++IEERGVKLRLTVVDTPG+GD+IN + ++ SYID+QF +Y +DE
Sbjct: 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESG 135
Query: 359 -NRQGKT-------------TTIEKKSMDIE-ERGVKLRLTVVDTPGFGDSINSEESWR- 402
NR+ K +D+ + + ++ +V D++ +E R
Sbjct: 136 LNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERL 195
Query: 403 -----ACCSYIDDQFRQYFNDESGLNRKNIVDNRFATNR--------------------H 437
+ + + ES + R
Sbjct: 196 KKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRG 255
Query: 438 RNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRG 497
R +VENP+H+DF KLR MLI THMQDL++VT+D+HYENFR++ L + ++ +
Sbjct: 256 RLYPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKRGGRKVENE 314
Query: 498 KLKKDSAPDGLITETDRLLLEKDEEL 523
+ D++LLEK+ EL
Sbjct: 315 DM-----------NKDQILLEKEAEL 329
Score = 79.9 bits (196), Expect = 2e-16
Identities = 43/54 (79%), Positives = 49/54 (90%)
Query: 79 YIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 132
Y+GFA LP QVHRKSVKKGF+FTLMVVGESGLGKSTL+NSLFL+DLY +R +P
Sbjct: 17 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPG 70
Score = 30.2 bits (67), Expect = 1.7
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 132 NVNGSNTVIEVAGTKVRGRQYPWGVVE 158
+V GSN +IE G KVRGR YPWGVVE
Sbjct: 238 SVVGSNQLIEAKGKKVRGRLYPWGVVE 264
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 193 bits (491), Expect = 6e-58
Identities = 98/273 (35%), Positives = 140/273 (51%), Gaps = 41/273 (15%)
Query: 256 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315
+ GF+FTLMVVGESGLGKSTL+NSLFL+DLY + P + R KT +E+ + I+E
Sbjct: 2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLY-SPEYPGPSHRIKKTVQVEQSKVLIKE 60
Query: 316 RGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR--------------- 360
GV+L LT+VDTPGFGD++++ W+ YID +F Y N E+R
Sbjct: 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL 120
Query: 361 -QGKTTTIEKKSMDIEE-RGVKLRLTVVDTPGFGDSINSEESW----------RACCSYI 408
+ K +DIE + + ++ ++ D++ EE + I
Sbjct: 121 YFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKI 180
Query: 409 DDQFRQYFNDESGLNRKNIVDNRFATN-------------RHRNNAPTPSQVENPKHSDF 455
+ +E+ L +K A R R ++VEN +H DF
Sbjct: 181 YEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWGVAEVENGEHCDF 240
Query: 456 NKLRNMLISTHMQDLKDVTEDVHYENFRAQCLS 488
LRNMLI THMQDLKDVT +VHYEN+R++ L+
Sbjct: 241 TILRNMLIRTHMQDLKDVTNNVHYENYRSRKLA 273
Score = 68.3 bits (166), Expect = 6e-13
Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 93 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY 125
+ GF+FTLMVVGESGLGKSTL+NSLFL+DLY
Sbjct: 2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLY 34
Score = 33.6 bits (76), Expect = 0.12
Identities = 20/26 (76%), Positives = 22/26 (84%)
Query: 133 VNGSNTVIEVAGTKVRGRQYPWGVVE 158
V GSNT+IEV G +VRGRQYPWGV E
Sbjct: 206 VVGSNTIIEVNGKRVRGRQYPWGVAE 231
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.7 bits (167), Expect = 3e-12
Identities = 90/559 (16%), Positives = 167/559 (29%), Gaps = 127/559 (22%)
Query: 34 NW-TSKISEENGDVYCLSCSPHCLTFPEAYRIKMTPDGGSCATDRDYIGFATLPEQVH-- 90
+ S I E S + R ++ D A Y + +
Sbjct: 92 KFLMSPIKTE-----QRQPSMMTRMY-IEQRDRLYNDNQVFA---KY--NVSRLQPYLKL 140
Query: 91 RKSVKKGFDFTLMVV-GESGLGKSTLVNSLFLSDLYGDR--------KVPNVNGSNTVIE 141
R+++ + +++ G G GK+ + + LS + + N N TV+E
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 142 VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPE------QVHRKSVKK 195
+ + W + I S+ R + V
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 196 GFDF---TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGS----IPYSDIGFATL 248
F+ L+ + + +++ + + D + + Y D L
Sbjct: 261 AFNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 249 PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308
P + V L ++ ES + + L D + K N + K TTI +
Sbjct: 319 PRE-----VLTTNPRRLSIIAES------IRDGLATWDNW---KHVNCD----KLTTIIE 360
Query: 309 KSMDI----EERGVKLRLTVVDTPGFGDSINSEES-----WRACCSYIDDQFRQYFNDE- 358
S+++ E R + RL+V F S + W +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 359 --NRQGKTTTIEKKSMDIEERG-----VKLRLTVVDTPGFGDSINSEESWRACCSYIDDQ 411
+Q K +TI S+ +E + L ++VD + +S Y+D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF---DSDDLIPPYLDQY 472
Query: 412 FRQYF---------NDESGLNRKNIVDNRFATNRHRNNAPTPSQVENPKHSDFNKLRNML 462
F + + L R +D RF + R+++ N S N L
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW----NASGSILNTL---- 524
Query: 463 ISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRGKLKKDSAPDGLITETDRLLLEKDEE 522
Q LK Y+ + I D + L+ L + +E
Sbjct: 525 -----QQLK------FYKPY-------IC--------DNDPKYERLVNAILDFLPKIEEN 558
Query: 523 LVKS---TIIISALNAPKQ 538
L+ S ++ AL A +
Sbjct: 559 LICSKYTDLLRIALMAEDE 577
Score = 45.6 bits (107), Expect = 4e-05
Identities = 28/208 (13%), Positives = 64/208 (30%), Gaps = 57/208 (27%)
Query: 344 CSYIDDQFRQYFNDENRQGKTTTIEK--KSMDIEERGVKLRLTVVDTPG------FGDSI 395
C + D + + E I+ S D ++L T++ + +
Sbjct: 35 CKDVQDMPKSILSKEE-------IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 396 NSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNRFATNRHRNNAP--TPSQVENPKHS 453
+ + + S + + ++ R +R N+ V +
Sbjct: 88 RINYKF------LMSPIKTEQRQPS-MMTRMYIEQR---DRLYNDNQVFAKYNVSRLQP- 136
Query: 454 DFNKLRNMLISTHMQDLKDVTEDVH--------------YENFRAQCLSQISQRGDRG-- 497
+ KLR L+ ++ K+V + +++ QC D
Sbjct: 137 -YLKLRQALLE--LRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKM------DFKIF 185
Query: 498 --KLKKDSAPDGLITETDRLLLEKDEEL 523
LK ++P+ ++ +LL + D
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNW 213
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 64.1 bits (156), Expect = 1e-11
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 236 GSIPYSDIGFATLP--------EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDL 287
GS+ +GF P E + K T++V+G+ G+GKS+ VNSL
Sbjct: 2 GSLVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI---- 57
Query: 288 YGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEE 338
+V V+ Q + S + + ++DTPG ++
Sbjct: 58 --GEQVVRVSPFQAEGLRPVMVSRTMGGF----TINIIDTPGLVEAGYVNH 102
Score = 36.3 bits (84), Expect = 0.018
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 22/88 (25%)
Query: 77 RDYIGFATLP--------EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDR 128
R+++GF P E + K T++V+G+ G+GKS+ VNSL
Sbjct: 6 REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI------GE 59
Query: 129 KVPNVNGSNTV--------IEVAGTKVR 148
+V V+ + G +
Sbjct: 60 QVVRVSPFQAEGLRPVMVSRTMGGFTIN 87
Score = 36.0 bits (83), Expect = 0.021
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 176 RDYIGFATLP--------EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219
R+++GF P E + K T++V+G+ G+GKS+ VNSL
Sbjct: 6 REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLI 57
Score = 34.8 bits (80), Expect = 0.045
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 352 RQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEE 399
Q Q + S + + ++DTPG ++
Sbjct: 59 EQVVRVSPFQAEGLRPVMVSRTMGGF----TINIIDTPGLVEAGYVNH 102
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 58.0 bits (140), Expect = 2e-09
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 248 LPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE 307
L E + + T++V+G+ G+GKS+ VNS+ +V +++ Q +
Sbjct: 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII------GERVVSISPFQSEGPRPV 78
Query: 308 KKSMDIEERGVKLRLTVVDTPGFGDSINSEE 338
S L ++DTPG + +
Sbjct: 79 MVSRSRAGF----TLNIIDTPGLIEGGYIND 105
Score = 36.8 bits (85), Expect = 0.010
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 170 SLFQTDRDYIGFATLP--------EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 219
S QT R++ G T E + + T++V+G+ G+GKS+ VNS+
Sbjct: 3 SQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Score = 35.3 bits (81), Expect = 0.037
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 77 RDYIGFATLP--------EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLF 120
R++ G T E + + T++V+G+ G+GKS+ VNS+
Sbjct: 9 REWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Score = 29.9 bits (67), Expect = 1.8
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 361 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEE 399
Q + S L ++DTPG + +
Sbjct: 71 QSEGPRPVMVSRSRAGF----TLNIIDTPGLIEGGYIND 105
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 56.5 bits (136), Expect = 3e-09
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321
+++VG++G GKS NS+ G + + + T EK+S +E
Sbjct: 29 QLRIVLVGKTGAGKSATGNSIL-----GRKVFHSGTAAKSITKKCEKRSSSWKET----E 79
Query: 322 LTVVDTPGFGDSINSEE 338
L VVDTPG D+
Sbjct: 80 LVVVDTPGIFDTEVPNA 96
Score = 35.0 bits (80), Expect = 0.043
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 361 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEE 399
+ T EK+S +E L VVDTPG D+
Sbjct: 62 KSITKKCEKRSSSWKET----ELVVVDTPGIFDTEVPNA 96
Score = 31.5 bits (71), Expect = 0.48
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 99 DFTLMVVGESGLGKSTLVNSLF 120
+++VG++G GKS NS+
Sbjct: 29 QLRIVLVGKTGAGKSATGNSIL 50
Score = 31.5 bits (71), Expect = 0.48
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 198 DFTLMVVGESGLGKSTLVNSLF 219
+++VG++G GKS NS+
Sbjct: 29 QLRIVLVGKTGAGKSATGNSIL 50
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 51.6 bits (123), Expect = 2e-07
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDR-QGKTTTIEKKSMDIEERGVKL 320
+ +++VG++G GKS NS+ ++ Q T T K R
Sbjct: 22 ELRIILVGKTGTGKSAAGNSIL------RKQAFESKLGSQTLTKTCSKSQGSWGNR---- 71
Query: 321 RLTVVDTPGFGDSINSEE 338
+ ++DTP + E
Sbjct: 72 EIVIIDTPDMFSWKDHCE 89
Score = 31.9 bits (72), Expect = 0.44
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 361 QGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEE 399
Q T T K R + ++DTP + E
Sbjct: 55 QTLTKTCSKSQGSWGNR----EIVIIDTPDMFSWKDHCE 89
Score = 30.8 bits (69), Expect = 0.88
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 99 DFTLMVVGESGLGKSTLVNSLF 120
+ +++VG++G GKS NS+
Sbjct: 22 ELRIILVGKTGTGKSAAGNSIL 43
Score = 30.8 bits (69), Expect = 0.88
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 198 DFTLMVVGESGLGKSTLVNSLF 219
+ +++VG++G GKS NS+
Sbjct: 22 ELRIILVGKTGTGKSAAGNSIL 43
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 47.4 bits (112), Expect = 4e-06
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321
L++VG +G GKS NS+ G R+ + T S ++
Sbjct: 21 TRRLILVGRTGAGKSATGNSIL-----GQRRFFSRLGATSVTRACTTGSRRWDKC----H 71
Query: 322 LTVVDTPGFGDSINSEE 338
+ VVDTP S S+
Sbjct: 72 VEVVDTPDIFSSQVSKT 88
Score = 30.0 bits (67), Expect = 1.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 99 DFTLMVVGESGLGKSTLVNSLF 120
L++VG +G GKS NS+
Sbjct: 21 TRRLILVGRTGAGKSATGNSIL 42
Score = 30.0 bits (67), Expect = 1.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 198 DFTLMVVGESGLGKSTLVNSLF 219
L++VG +G GKS NS+
Sbjct: 21 TRRLILVGRTGAGKSATGNSIL 42
Score = 29.3 bits (65), Expect = 2.6
Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 24/209 (11%)
Query: 319 KLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENR-QGKTTTIEKKSMDIEER 377
RL +V G G S S + ++ F T S ++
Sbjct: 21 TRRLILVGRTGAGKS-------ATGNSILG---QRRFFSRLGATSVTRACTTGSRRWDKC 70
Query: 378 GVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNRFATNRH 437
+ VVDTP S S+ +++ Y G + +V
Sbjct: 71 ----HVEVVDTPDIFSSQVSKTDPG-----CEERGHCYLLSAPGPHALLLVTQL--GRFT 119
Query: 438 RNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLSQISQRGDRG 497
+ QV + D K +++ T +DL + + N + L ++
Sbjct: 120 AQDQQAVRQVRDMFGEDVLK-WMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR 178
Query: 498 KLKKDSAPDGLITETDRL-LLEKDEELVK 525
D+ G E LL E LV
Sbjct: 179 VCAFDNRATGREQEAQVEQLLGMVEGLVL 207
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 46.9 bits (112), Expect = 9e-06
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 25/122 (20%)
Query: 221 SDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDF----------TLMVVGE 270
DL D + VNE+ I Y +IG+ +V S + G+
Sbjct: 170 IDLLDDEGMDFVNEQMDI-YRNIGY-----RVLMVSSHTQDGLKPLEEALTGRISIFAGQ 223
Query: 271 SGLGKSTLVNSLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEERGVKLRLTVVDTP 328
SG+GKS+L+N+L + +V++ G+ TT + G V+D+P
Sbjct: 224 SGVGKSSLLNALLGLQN--EILTNDVSNVSGLGQHTTTAARLYHFPHGGD-----VIDSP 276
Query: 329 GF 330
G
Sbjct: 277 GV 278
Score = 33.4 bits (77), Expect = 0.19
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 101 TLMVVGESGLGKSTLVNSLFLSDL 124
+ G+SG+GKS+L+N+L
Sbjct: 217 ISIFAGQSGVGKSSLLNALLGLQN 240
Score = 33.4 bits (77), Expect = 0.19
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 200 TLMVVGESGLGKSTLVNSLFLSDL 223
+ G+SG+GKS+L+N+L
Sbjct: 217 ISIFAGQSGVGKSSLLNALLGLQN 240
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 45.6 bits (109), Expect = 2e-05
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDF----------TLMVVGES 271
DL + + + SI Y D G+ V + S K G ++ G S
Sbjct: 121 DLLNEEEKKELERWISI-YRDAGY-----DVLKVSAKTGEGIDELVDYLEGFICILAGPS 174
Query: 272 GLGKSTLVNSLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEERGVKLRLTVVDTPG 329
G+GKS++++ L +L + V+++ +G+ TT + + + V DTPG
Sbjct: 175 GVGKSSILSRLTGEEL----RTQEVSEKTERGRHTTTGVRLIPFGKGSF-----VGDTPG 225
Query: 330 F 330
F
Sbjct: 226 F 226
Score = 32.2 bits (74), Expect = 0.34
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 101 TLMVVGESGLGKSTLVNSLF 120
++ G SG+GKS++++ L
Sbjct: 167 ICILAGPSGVGKSSILSRLT 186
Score = 32.2 bits (74), Expect = 0.34
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 200 TLMVVGESGLGKSTLVNSLF 219
++ G SG+GKS++++ L
Sbjct: 167 ICILAGPSGVGKSSILSRLT 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 2e-05
Identities = 78/446 (17%), Positives = 141/446 (31%), Gaps = 138/446 (30%)
Query: 178 YIGFATLPEQVHRKSVKKGFDFTLMVVG--ESGLGKSTLVNSLFLSDLYGDRKVPNVNEK 235
++G+ + V V + + + E+ + +++L + L + V K
Sbjct: 64 FLGYVS--SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-AAKLLQENDTTLVKTK 120
Query: 236 GSIP--YSDIGFATLPEQVHRKS-----VKKGFDFTLMVV-GESGLGKSTLVNSLF--LS 285
I + A P S V +G + L+ + G G G + + F L
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFG--GQGNT---DDYFEELR 174
Query: 286 DLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESW----- 340
DLY V D I+ + + E +R T+ F +N W
Sbjct: 175 DLY-QTYHVLVGD------LIKFSAETLSEL---IRTTLDAEKVFTQGLNIL-EWLENPS 223
Query: 341 -RACCSYIDD-----------QFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTVVDT 388
Y+ Q Y G T + + +G T
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL----KG----ATGH-- 273
Query: 389 PGFGDSI---------NSEESWRACCS-------YIDDQFRQYF---------------N 417
+ +S ES+ +I + + + N
Sbjct: 274 ---SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 418 DE---------SGLNRKNIVDNRFATNRHRNNAPTPSQVENPKHSDFNKLRNMLISTHMQ 468
+E S L ++ + D TN H P QVE S N +N+++S Q
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSH---LPAGKQVE---ISLVNGAKNLVVSGPPQ 384
Query: 469 DLKDVTEDVHYENFRA-----QCLSQI--SQRGDRGKLKKD------SAP---DGLITET 512
L + ++ +A Q S+I S+R KLK ++P L+ +
Sbjct: 385 SLYGL--NLTLRKAKAPSGLDQ--SRIPFSER----KLKFSNRFLPVASPFHSHLLVPAS 436
Query: 513 DRLLLEKDEELVKSTIIISA--LNAP 536
D + ++LVK+ + +A + P
Sbjct: 437 DLIN----KDLVKNNVSFNAKDIQIP 458
Score = 39.6 bits (92), Expect = 0.003
Identities = 51/291 (17%), Positives = 79/291 (27%), Gaps = 130/291 (44%)
Query: 171 LFQTDRDYIGFA--------TLPEQVHRKSVKKGFDF-TLM-VVGESGLGKSTL------ 214
LF +IG +LP + S++ + M + S L + +
Sbjct: 303 LF-----FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI--SNLTQEQVQDYVNK 355
Query: 215 VN-----------SLF-------LS----DLYG------DRKVPNVNEKGSIPYSDIGFA 246
N SL +S LYG K P+ ++ IP+S+
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---- 411
Query: 247 TLPEQVHRKSVKKGFDFTLMVVGESGLGKSTL-VNSLFLSDLYGDRKVPNVNDRQGKTTT 305
RK +K F L V S F S L D +
Sbjct: 412 -------RK-LKFSNRF--------------LPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 306 IEKKSMDIEERGVKLRLTVVDTP------GFGDSINSEES-----------WRACC---- 344
K +++ V DT SI+ E W
Sbjct: 450 FNAKD---------IQIPVYDTFDGSDLRVLSGSIS--ERIVDCIIRLPVKWETTTQFKA 498
Query: 345 SYIDDQFRQYFN-----------DENRQGK-TTTIEKKSMDI---EERGVK 380
++I D F N+ G I ++DI ++ G K
Sbjct: 499 THILD-----FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 42.6 bits (101), Expect = 2e-04
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 34/125 (27%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDF----------TLMVVGES 271
DL D+ + + + Y +IG+ V+ S K T + G+S
Sbjct: 128 DLIEDQDTEDTIQAYAEDYRNIGY-----DVYLTSSKDQDSLADIIPHFQDKTTVFAGQS 182
Query: 272 GLGKSTLVNSLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEERGVKL-RLT---VV 325
G+GKS+L+N++ +L + +++ +GK TT R V+L + V
Sbjct: 183 GVGKSSLLNAI-SPEL--GLRTNEISEHLGRGKHTT----------RHVELIHTSGGLVA 229
Query: 326 DTPGF 330
DTPGF
Sbjct: 230 DTPGF 234
Score = 32.5 bits (75), Expect = 0.32
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 101 TLMVVGESGLGKSTLVNSL 119
T + G+SG+GKS+L+N++
Sbjct: 175 TTVFAGQSGVGKSSLLNAI 193
Score = 32.5 bits (75), Expect = 0.32
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 200 TLMVVGESGLGKSTLVNSL 218
T + G+SG+GKS+L+N++
Sbjct: 175 TTVFAGQSGVGKSSLLNAI 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 41.0 bits (97), Expect = 6e-04
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDF----------TLMVVGES 271
DLY + + V E I YS + + + S K G + G S
Sbjct: 126 DLYDEDDLRKVRELEEI-YSGLY------PIVKTSAKTGMGIEELKEYLKGKISTMAGLS 178
Query: 272 GLGKSTLVNSLFLSDLYGDRKVPNVNDR--QGKTTTIEKKSMDIEERGVKLRLTVVDTPG 329
G+GKS+L+N++ L +V V+++ +G+ TT + + + G VVDTPG
Sbjct: 179 GVGKSSLLNAI-NPGL--KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGY-----VVDTPG 230
Query: 330 F 330
F
Sbjct: 231 F 231
Score = 32.5 bits (75), Expect = 0.29
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 101 TLMVVGESGLGKSTLVNSL 119
+ G SG+GKS+L+N++
Sbjct: 171 ISTMAGLSGVGKSSLLNAI 189
Score = 32.5 bits (75), Expect = 0.29
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 200 TLMVVGESGLGKSTLVNSL 218
+ G SG+GKS+L+N++
Sbjct: 171 ISTMAGLSGVGKSSLLNAI 189
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 41.5 bits (96), Expect = 6e-04
Identities = 46/295 (15%), Positives = 93/295 (31%), Gaps = 28/295 (9%)
Query: 199 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVK 258
F L+V+G+ GKST +N+L G+ +P SD+ T V ++
Sbjct: 70 FRLLVLGDMKRGKSTFLNALI-----GENLLP----------SDVNPCTAVLTV----LR 110
Query: 259 KGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGV 318
G + + + G L F D +++ K + +E
Sbjct: 111 YGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLT 170
Query: 319 KLR--LTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEE 376
L+ + +VD+PG D+ E + + ++ I+
Sbjct: 171 LLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAIL--FVMRASQPCTLGERRYLENYIKG 228
Query: 377 RGVKLR--LTVVDTPGFGD-SINSEESWRACCSYIDDQFRQYFNDESGLNRKNIVDNR-- 431
RG+ + + D + E +A + + F + + +NI D R
Sbjct: 229 RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVF 288
Query: 432 FATNRHRNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQC 486
++ + + + F K + L + ++ R C
Sbjct: 289 ELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRERAIAELRQVRTLARLAC 343
Score = 35.7 bits (81), Expect = 0.041
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 100 FTLMVVGESGLGKSTLVNSLFLSDL 124
F L+V+G+ GKST +N+L +L
Sbjct: 70 FRLLVLGDMKRGKSTFLNALIGENL 94
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 39.5 bits (93), Expect = 0.001
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 235 KGSIPYSDIGFATLPEQVHRKSVKKGFDF------TLMVVGESGLGKSTLVNSLF 283
+I +SD+ F+ P+Q + + K +F T +VG +G GKST+ L+
Sbjct: 15 GVNIEFSDVNFS-YPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY 67
Score = 33.7 bits (78), Expect = 0.12
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 96 KGFDF------TLMVVGESGLGKSTLVNSLF 120
K +F T +VG +G GKST+ L+
Sbjct: 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLY 67
Score = 33.7 bits (78), Expect = 0.12
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 195 KGFDF------TLMVVGESGLGKSTLVNSLF 219
K +F T +VG +G GKST+ L+
Sbjct: 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLY 67
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 38.9 bits (90), Expect = 0.003
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT-TTIEKKSMDIEERGVKLR 321
+ V GE+G GKS+ +N+L G + G T+E+
Sbjct: 70 LNVAVTGETGSGKSSFINTLR-----GIGNEEEGAAKTGVVEVTMERHPYKHPNIP---N 121
Query: 322 LTVVDTPGFGDSINSEESW 340
+ D PG G + +++
Sbjct: 122 VVFWDLPGIGSTNFPPDTY 140
Score = 34.3 bits (78), Expect = 0.10
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 100 FTLMVVGESGLGKSTLVNSLF 120
+ V GE+G GKS+ +N+L
Sbjct: 70 LNVAVTGETGSGKSSFINTLR 90
Score = 34.3 bits (78), Expect = 0.10
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 199 FTLMVVGESGLGKSTLVNSLF 219
+ V GE+G GKS+ +N+L
Sbjct: 70 LNVAVTGETGSGKSSFINTLR 90
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 38.4 bits (90), Expect = 0.005
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 235 KGSIPYSDIGFATLPEQVHRKSVKKGFDFTLM------VVGESGLGKSTLVNSLF 283
KG I + ++ F+ + + FT+M +VG SG GKST++ LF
Sbjct: 51 KGRIEFENVHFSYADG----RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF 101
Score = 33.3 bits (77), Expect = 0.15
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 60 EAYRIKMTPDGGSCATDRDYIGFATLPEQVH-----RKSVKKGFDFTLM------VVGES 108
E +K P G + I F E VH + + FT+M +VG S
Sbjct: 34 EETEVKDLPGAGPLRFQKGRIEF----ENVHFSYADGRETLQDVSFTVMPGQTLALVGPS 89
Query: 109 GLGKSTLVNSLF 120
G GKST++ LF
Sbjct: 90 GAGKSTILRLLF 101
Score = 33.3 bits (77), Expect = 0.16
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
Query: 186 EQVH-----RKSVKKGFDFTLM------VVGESGLGKSTLVNSLF 219
E VH + + FT+M +VG SG GKST++ LF
Sbjct: 57 ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF 101
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 37.8 bits (89), Expect = 0.006
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 235 KGSIPYSDIGFATLPEQVHRKSVKKGFDF------TLMVVGESGLGKSTLVN 280
I + +I F P + + + +VG SG GKSTL
Sbjct: 5 HHDITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTK 53
Score = 31.7 bits (73), Expect = 0.48
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 90 HRKSVKKGFDF------TLMVVGESGLGKSTLVN 117
+ + + +VG SG GKSTL
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTK 53
Score = 31.7 bits (73), Expect = 0.48
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 189 HRKSVKKGFDF------TLMVVGESGLGKSTLVN 216
+ + + +VG SG GKSTL
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTK 53
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 38.0 bits (89), Expect = 0.009
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFA--TLPEQVHRKSVKKGFDF------TLMVVGESGL 273
+ + +G++ + ++ FA PE + + F +VG SG
Sbjct: 326 PFNEGVILNEKSFQGALEFKNVHFAYPARPEV----PIFQDFSLSIPSGSVTALVGPSGS 381
Query: 274 GKSTLVN 280
GKST+++
Sbjct: 382 GKSTVLS 388
Score = 31.0 bits (71), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 96 KGFDF------TLMVVGESGLGKSTLVN 117
+ F +VG SG GKST+++
Sbjct: 361 QDFSLSIPSGSVTALVGPSGSGKSTVLS 388
Score = 31.0 bits (71), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 195 KGFDF------TLMVVGESGLGKSTLVN 216
+ F +VG SG GKST+++
Sbjct: 361 QDFSLSIPSGSVTALVGPSGSGKSTVLS 388
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 37.6 bits (88), Expect = 0.011
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTL----MV--VGESGLGKSTL 278
G + V G + D+ F ++ K F++ V VG SG GKST+
Sbjct: 331 GKYEAERV--NGEVDVKDVTFTYQGKE---KPALSHVSFSIPQGKTVALVGRSGSGKSTI 385
Query: 279 VN 280
N
Sbjct: 386 AN 387
Score = 32.2 bits (74), Expect = 0.55
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 92 KSVKKGFDFTL----MV--VGESGLGKSTLVN 117
K F++ V VG SG GKST+ N
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387
Score = 32.2 bits (74), Expect = 0.55
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 191 KSVKKGFDFTL----MV--VGESGLGKSTLVN 216
K F++ V VG SG GKST+ N
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 37.2 bits (87), Expect = 0.012
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 225 GDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTL----MV--VGESGLGKSTL 278
G R + G + + ++ F + + + + V VG SG GKST+
Sbjct: 331 GKRVIDRA--TGDLEFRNVTFTYPGRE---VPALRNINLKIPAGKTVALVGRSGSGKSTI 385
Query: 279 VN 280
+
Sbjct: 386 AS 387
Score = 31.8 bits (73), Expect = 0.60
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 96 KGFDFTL----MV--VGESGLGKSTLVN 117
+ + + V VG SG GKST+ +
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIAS 387
Score = 31.8 bits (73), Expect = 0.60
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 195 KGFDFTL----MV--VGESGLGKSTLVN 216
+ + + V VG SG GKST+ +
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIAS 387
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 37.3 bits (87), Expect = 0.014
Identities = 25/115 (21%), Positives = 35/115 (30%), Gaps = 35/115 (30%)
Query: 19 PPPRTPKRVRTLPRRNWTSKISEENGDVYCLSCSPHCLTFPEAYRIKMTPDGGSCATDRD 78
P R + N+ I E + C C + P +
Sbjct: 44 PVNRMGGEAIIIDEENYKPIIQEAS----CTGC---------GICVHKCPF--------N 82
Query: 79 YIGFATLPEQ-----VHRKSVKKGFDF---------TLMVVGESGLGKSTLVNSL 119
I LPEQ VHR V + + +VG +G GK+T V L
Sbjct: 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKIL 137
Score = 34.2 bits (79), Expect = 0.13
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 239 PYSDIGFATLPEQ-----VHRKSVKKGFDF---------TLMVVGESGLGKSTLVNSL 282
P++ I LPEQ VHR V + + +VG +G GK+T V L
Sbjct: 80 PFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKIL 137
Score = 33.1 bits (76), Expect = 0.25
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 101 TLMVVGESGLGKSTLVNSL 119
+ +VG +G+GK+T V L
Sbjct: 384 VIGIVGPNGIGKTTFVKML 402
Score = 33.1 bits (76), Expect = 0.25
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 200 TLMVVGESGLGKSTLVNSL 218
+ +VG +G+GK+T V L
Sbjct: 384 VIGIVGPNGIGKTTFVKML 402
Score = 33.1 bits (76), Expect = 0.25
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 264 TLMVVGESGLGKSTLVNSL 282
+ +VG +G+GK+T V L
Sbjct: 384 VIGIVGPNGIGKTTFVKML 402
Score = 32.7 bits (75), Expect = 0.32
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 188 VHRKSVKKGFDF---------TLMVVGESGLGKSTLVNSL 218
VHR V + + +VG +G GK+T V L
Sbjct: 98 VHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKIL 137
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 35.7 bits (83), Expect = 0.016
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 22/91 (24%)
Query: 267 VVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVD 326
G S +GKSTL+ L +KV R G T I IE ++ +D
Sbjct: 6 FAGRSNVGKSTLIYRLT------GKKVR-RGKRPGVTRKI------IEIEWKNHKI--ID 50
Query: 327 TPGFG----DSINSEESWRACCSYIDDQFRQ 353
PGFG +E + I
Sbjct: 51 MPGFGFMMGLPKEVQERIK---DEIVHFIED 78
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 36.0 bits (84), Expect = 0.029
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKGFDFTL----MV--VGESGLGK 275
+ G + + +G I + F + + K + ++ V VG SG GK
Sbjct: 326 NGVGAQPIEIK--QGRIDIDHVSFQYNDNE---APILKDINLSIEKGETVAFVGMSGGGK 380
Query: 276 STLVN 280
STL+N
Sbjct: 381 STLIN 385
Score = 30.2 bits (69), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 92 KSVKKGFDFTL----MV--VGESGLGKSTLVN 117
+ K + ++ V VG SG GKSTL+N
Sbjct: 354 APILKDINLSIEKGETVAFVGMSGGGKSTLIN 385
Score = 30.2 bits (69), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 191 KSVKKGFDFTL----MV--VGESGLGKSTLVN 216
+ K + ++ V VG SG GKSTL+N
Sbjct: 354 APILKDINLSIEKGETVAFVGMSGGGKSTLIN 385
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 35.4 bits (81), Expect = 0.036
Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 41/188 (21%)
Query: 187 QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL----------FLSDLYG-----DRKVPN 231
Q+ ++ + +++VG G GKST+ L FLS+ DR P
Sbjct: 13 QLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPM 72
Query: 232 VNEKGSIPYSDIGF----------------ATLPEQVHRKSVKKGFDFTLMVVGESGLGK 275
VN S+ + V ++ + VV G
Sbjct: 73 VNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTAN 132
Query: 276 STLVNSLFLSDLYGDRKVPNVNDRQGKTTT---------IEKKSMDIEERGVKLRLTVVD 326
+ + ++ + + ++ + + ++ + + D
Sbjct: 133 AIRIAAV-DNPVNVNKLAQDSINIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFD 191
Query: 327 TPGFGDSI 334
+ F
Sbjct: 192 SNNFLQLC 199
Score = 32.3 bits (73), Expect = 0.42
Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 16/137 (11%)
Query: 88 QVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL------FLSDLYGDRKVPNVNGSNTVIE 141
Q+ ++ + +++VG G GKST+ L +
Sbjct: 13 QLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPM 72
Query: 142 VAGTKVRGRQYPWGVVEGSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTL 201
V P V E G D + V ++ +
Sbjct: 73 VNLVDSLKTLQPNKVAEMIENQ-----GLFKDHVEDVNF-----QPVKYSALTSNNEECT 122
Query: 202 MVVGESGLGKSTLVNSL 218
VV G + + ++
Sbjct: 123 AVVARGGTANAIRIAAV 139
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 35.8 bits (83), Expect = 0.045
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 222 DLYGDRKVPNVNEKGSIPYSDIGFA--TLPEQVHRKSVKKGFDF------TLMVVGESGL 273
D Y + + +G++ +S + F T P V +G TL +VG SG
Sbjct: 1015 DSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSI----PVLQGLSLEVKKGQTLALVGSSGC 1070
Query: 274 GKSTLVN 280
GKST+V
Sbjct: 1071 GKSTVVQ 1077
Score = 34.6 bits (80), Expect = 0.089
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 235 KGSIPYSDIGFA--TLPEQVHRKSVKKGFDF------TLMVVGESGLGKSTLVN 280
+G++ + +I F+ + E + KG + T+ +VG SG GKST V
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQ----ILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434
Score = 30.8 bits (70), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
Query: 91 RKSVK--KGFDF------TLMVVGESGLGKSTLVN 117
RK V+ KG + T+ +VG SG GKST V
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434
Score = 30.8 bits (70), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
Query: 190 RKSVK--KGFDF------TLMVVGESGLGKSTLVN 216
RK V+ KG + T+ +VG SG GKST V
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434
Score = 30.4 bits (69), Expect = 2.0
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 96 KGFDF------TLMVVGESGLGKSTLVN 117
+G TL +VG SG GKST+V
Sbjct: 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQ 1077
Score = 30.4 bits (69), Expect = 2.0
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 195 KGFDF------TLMVVGESGLGKSTLVN 216
+G TL +VG SG GKST+V
Sbjct: 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQ 1077
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 35.3 bits (81), Expect = 0.048
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 266 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVV 325
VVG + +GKST +N + V + G TT++ + ++E ++
Sbjct: 164 YVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG--TTLDLIDIPLDE-----ESSLY 216
Query: 326 DTPGF 330
DTPG
Sbjct: 217 DTPGI 221
Score = 30.3 bits (68), Expect = 1.8
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 133
VVG + +GKST +N + V
Sbjct: 164 YVVGCTNVGKSTFINRMIKEFSDETENVITT 194
Score = 30.3 bits (68), Expect = 1.8
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 202 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNV 232
VVG + +GKST +N + V
Sbjct: 164 YVVGCTNVGKSTFINRMIKEFSDETENVITT 194
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 34.8 bits (81), Expect = 0.058
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 235 KGSIPYSDIGFA--TLPEQVHRKSVKKGFDFTLM------VVGESGLGKSTLVN 280
KG + + D+ FA P V +G FTL +VG +G GKST+
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Score = 29.8 bits (68), Expect = 2.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 91 RKSVK--KGFDFTLM------VVGESGLGKSTLVN 117
+V+ +G FTL +VG +G GKST+
Sbjct: 29 HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Score = 29.8 bits (68), Expect = 2.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 190 RKSVK--KGFDFTLM------VVGESGLGKSTLVN 216
+V+ +G FTL +VG +G GKST+
Sbjct: 29 HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 33.7 bits (78), Expect = 0.094
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 258 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIE 314
++ D+ ++V G G+GKS+LV F+ + D +P TIE ++ +
Sbjct: 4 EQSNDYRVVVFGAGGVGKSSLVLR-FVKGTFRDTYIP----------TIEDTYRQVISC- 51
Query: 315 ERGVKLRLTVVDTPG 329
L + DT G
Sbjct: 52 -DKSVCTLQITDTTG 65
Score = 28.4 bits (64), Expect = 5.3
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
Query: 95 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD----------RKVPNVNGSNTVIEV-- 142
++ D+ ++V G G+GKS+LV F+ + D R+V + + S +++
Sbjct: 4 EQSNDYRVVVFGAGGVGKSSLVLR-FVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITD 62
Query: 143 -AGT 145
G+
Sbjct: 63 TTGS 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 34.2 bits (79), Expect = 0.12
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 101 TLMVVGESGLGKSTLVNSL 119
L +VG +G+GKST + L
Sbjct: 105 VLGLVGTNGIGKSTALKIL 123
Score = 34.2 bits (79), Expect = 0.12
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 200 TLMVVGESGLGKSTLVNSL 218
L +VG +G+GKST + L
Sbjct: 105 VLGLVGTNGIGKSTALKIL 123
Score = 34.2 bits (79), Expect = 0.12
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 264 TLMVVGESGLGKSTLVNSL 282
L +VG +G+GKST + L
Sbjct: 105 VLGLVGTNGIGKSTALKIL 123
Score = 32.7 bits (75), Expect = 0.37
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 101 TLMVVGESGLGKSTLVNSL 119
L+++GE+G GK+TL+ L
Sbjct: 380 ILVMMGENGTGKTTLIKLL 398
Score = 32.7 bits (75), Expect = 0.37
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 200 TLMVVGESGLGKSTLVNSL 218
L+++GE+G GK+TL+ L
Sbjct: 380 ILVMMGENGTGKTTLIKLL 398
Score = 32.7 bits (75), Expect = 0.37
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 264 TLMVVGESGLGKSTLVNSL 282
L+++GE+G GK+TL+ L
Sbjct: 380 ILVMMGENGTGKTTLIKLL 398
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 33.8 bits (78), Expect = 0.13
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 249 PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEK 308
P + + GF ++V G +GKS+ +N+L + V V+D G TT
Sbjct: 21 PRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALV------GQNVSIVSDYAGTTTDPVY 74
Query: 309 KSMDIEERGVKLRLTVVDTPGFGD 332
KSM++ G +T+VDTPG D
Sbjct: 75 KSMELHPIG---PVTLVDTPGLDD 95
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 32.9 bits (76), Expect = 0.14
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGVK 319
+ ++++G+ G+GK++L SLF D E ++++ ++
Sbjct: 5 YRVVLLGDPGVGKTSLA-SLFAGKQERDLHEQ----------LGEDVYERTLTVDGEDTT 53
Query: 320 LRLTVVDTPG 329
L VVDT
Sbjct: 54 --LVVVDTWE 61
Score = 27.5 bits (62), Expect = 7.2
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 14/59 (23%)
Query: 100 FTLMVVGESGLGKSTLVNSLFLSDLYGD----------RKVPNVNGSNTVIEV---AGT 145
+ ++++G+ G+GK++L SLF D + V+G +T + V
Sbjct: 5 YRVVLLGDPGVGKTSLA-SLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 32.5 bits (75), Expect = 0.15
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGV 318
D+ + V G G+GKS+LV F+ + + +P T+E ++ +
Sbjct: 3 DYRVAVFGAGGVGKSSLVLR-FVKGTFRESYIP----------TVEDTYRQVISC--DKS 49
Query: 319 KLRLTVVDTPG 329
L + DT G
Sbjct: 50 ICTLQITDTTG 60
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 32.8 bits (76), Expect = 0.19
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 238 IPYSDIGFATLPEQVHRKSVKKGFDF------TLMVVGESGLGKSTLVNSLF 283
+ + FA + + + F + G SG GKST+ + L
Sbjct: 2 LSARHVDFAYDD----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
Score = 32.4 bits (75), Expect = 0.23
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 91 RKSVKKGFDF------TLMVVGESGLGKSTLVNSLF 120
+ + + F + G SG GKST+ + L
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
Score = 32.4 bits (75), Expect = 0.23
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 190 RKSVKKGFDF------TLMVVGESGLGKSTLVNSLF 219
+ + + F + G SG GKST+ + L
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 32.6 bits (75), Expect = 0.20
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 249 PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE- 307
E ++ +S+ K + L + G +G+GKS LV FL+ + P T+E
Sbjct: 15 TENLYFQSMAKSAEVKLAIFGRAGVGKSALVV-RFLTKRFIWEYDP----------TLES 63
Query: 308 --KKSMDIEERGVKLRLTVVDTPG 329
+ I++ V + ++DT G
Sbjct: 64 TYRHQATIDDEVVSME--ILDTAG 85
Score = 29.1 bits (66), Expect = 2.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 171 LFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLV 215
+ G E ++ +S+ K + L + G +G+GKS LV
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALV 45
Score = 28.3 bits (64), Expect = 4.3
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 86 PEQVHRKSVKKGFDFTLMVVGESGLGKSTL----VNSLFLSDLY----GD--RKVPNVNG 135
E ++ +S+ K + L + G +G+GKS L + F+ + Y R ++
Sbjct: 15 TENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDD 73
Query: 136 SNTVIEV---AGT 145
+E+ AG
Sbjct: 74 EVVSMEILDTAGQ 86
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 32.7 bits (75), Expect = 0.20
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L++VG+ G GK+T V L+ + + T +E + ++
Sbjct: 16 FKLVLVGDGGTGKTTFVKR-HLTGEF--------EKKYVATLGVEVHPLVFHTNRGPIKF 66
Query: 323 TVVDTPG 329
V DT G
Sbjct: 67 NVWDTAG 73
Score = 29.2 bits (66), Expect = 2.7
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 199 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIG--FATLPEQVHRKS 256
F L++VG+ G GK+T V L+ + + V + +G L +R
Sbjct: 16 FKLVLVGDGGTGKTTFVKR-HLTGEFEKKYV-----------ATLGVEVHPLVFHTNRGP 63
Query: 257 VK 258
+K
Sbjct: 64 IK 65
Score = 28.4 bits (64), Expect = 5.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 100 FTLMVVGESGLGKSTLVN 117
F L++VG+ G GK+T V
Sbjct: 16 FKLVLVGDGGTGKTTFVK 33
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 33.5 bits (77), Expect = 0.21
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 101 TLMVVGESGLGKSTLVNSL 119
+ ++G +G+GK+T L
Sbjct: 296 IIGILGPNGIGKTTFARIL 314
Score = 33.5 bits (77), Expect = 0.21
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 200 TLMVVGESGLGKSTLVNSL 218
+ ++G +G+GK+T L
Sbjct: 296 IIGILGPNGIGKTTFARIL 314
Score = 33.5 bits (77), Expect = 0.21
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 264 TLMVVGESGLGKSTLVNSL 282
+ ++G +G+GK+T L
Sbjct: 296 IIGILGPNGIGKTTFARIL 314
Score = 32.3 bits (74), Expect = 0.39
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 101 TLMVVGESGLGKSTLVNSL 119
L V+G++G+GK+T++ L
Sbjct: 27 ILGVLGKNGVGKTTVLKIL 45
Score = 32.3 bits (74), Expect = 0.39
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 200 TLMVVGESGLGKSTLVNSL 218
L V+G++G+GK+T++ L
Sbjct: 27 ILGVLGKNGVGKTTVLKIL 45
Score = 32.3 bits (74), Expect = 0.39
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 264 TLMVVGESGLGKSTLVNSL 282
L V+G++G+GK+T++ L
Sbjct: 27 ILGVLGKNGVGKTTVLKIL 45
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 33.0 bits (75), Expect = 0.23
Identities = 7/65 (10%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
+ ++G+ GK++L+ + + + ++ K ++ ++ +
Sbjct: 44 VHLIGDGMAGKTSLLKQ-LIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 325 VDTPG 329
D G
Sbjct: 103 WDFGG 107
Score = 28.0 bits (62), Expect = 8.8
Identities = 5/67 (7%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 201 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKKG 260
+ ++G+ GK++L+ + + + ++ ++ P ++ +
Sbjct: 44 VHLIGDGMAGKTSLLKQ-LIGETFDPKESQTHG-------LNVVTKQAPNIKGLENDDEL 95
Query: 261 FDFTLMV 267
+
Sbjct: 96 KECLFHF 102
Score = 28.0 bits (62), Expect = 9.1
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 102 LMVVGESGLGKSTLVNSL 119
+ ++G+ GK++L+ L
Sbjct: 44 VHLIGDGMAGKTSLLKQL 61
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 33.0 bits (76), Expect = 0.24
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 101 TLMVVGESGLGKSTLVNSL 119
+ +VG +G+GK+T V L
Sbjct: 314 VIGIVGPNGIGKTTFVKML 332
Score = 33.0 bits (76), Expect = 0.24
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 200 TLMVVGESGLGKSTLVNSL 218
+ +VG +G+GK+T V L
Sbjct: 314 VIGIVGPNGIGKTTFVKML 332
Score = 33.0 bits (76), Expect = 0.24
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 264 TLMVVGESGLGKSTLVNSL 282
+ +VG +G+GK+T V L
Sbjct: 314 VIGIVGPNGIGKTTFVKML 332
Score = 31.1 bits (71), Expect = 1.2
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 101 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQYPWGVVEGS 160
+ +VG +G GKST V L + +PN+ G N + RG +
Sbjct: 49 VVGIVGPNGTGKSTAVKIL------AGQLIPNLCGDNDSWDGVIRAFRGNELQ------- 95
Query: 161 TVLTPSLIGSLFQ 173
G +
Sbjct: 96 NYFEKLKNGEIRP 108
Score = 30.3 bits (69), Expect = 1.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 200 TLMVVGESGLGKSTLVNSL 218
+ +VG +G GKST V L
Sbjct: 49 VVGIVGPNGTGKSTAVKIL 67
Score = 30.3 bits (69), Expect = 1.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 264 TLMVVGESGLGKSTLVNSL 282
+ +VG +G GKST V L
Sbjct: 49 VVGIVGPNGTGKSTAVKIL 67
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 32.7 bits (74), Expect = 0.27
Identities = 21/241 (8%), Positives = 59/241 (24%), Gaps = 35/241 (14%)
Query: 267 VVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ------------------GKTTTIEK 308
++G++G GKS+L++++ + LY ++ ++ + G I +
Sbjct: 28 IIGQNGSGKSSLLDAILVG-LYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITR 86
Query: 309 KSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIE 368
+ + G + + + F + N I
Sbjct: 87 RFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAI-------SAFMEKLIPYNIFLNAIYIR 139
Query: 369 KKSMDIEERGVKLRLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDESGLNRKNIV 428
+ +D + R VV D + + +
Sbjct: 140 QGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALARE 199
Query: 429 DNRFATNRHRNNAPTPSQVENPKHSDFNKLRNMLISTHMQDLKDVTEDVHYENFRAQCLS 488
+ +++ ++ ++ + + LS
Sbjct: 200 AALSKIGELASE-----IFAEFTEGKYSE----VVVRAEENKVRLFVVWEGKERPLTFLS 250
Query: 489 Q 489
Sbjct: 251 G 251
Score = 30.4 bits (68), Expect = 1.4
Identities = 8/36 (22%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 203 VVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSI 238
++G++G GKS+L++++ + LY ++ ++ +
Sbjct: 28 IIGQNGSGKSSLLDAILVG-LYWPLRIKDIKKDEFT 62
Score = 29.6 bits (66), Expect = 2.6
Identities = 8/26 (30%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 104 VVGESGLGKSTLVNSLFLSDLYGDRK 129
++G++G GKS+L++++ + LY +
Sbjct: 28 IIGQNGSGKSSLLDAILVG-LYWPLR 52
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 32.7 bits (75), Expect = 0.27
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 17/67 (25%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL--RL 322
+++G +GKSTL+N L + + DR G TT+ + VK+ L
Sbjct: 123 ALIIGIPNVGKSTLINRL------AKKNIAKTGDRPGITTSQ---------QWVKVGKEL 167
Query: 323 TVVDTPG 329
++DTPG
Sbjct: 168 ELLDTPG 174
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 32.6 bits (75), Expect = 0.29
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 17/66 (25%)
Query: 266 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL--RLT 323
++VG GKST++N L ++ +V + G T K + + L +
Sbjct: 103 LIVGVPNTGKSTIINKL------KGKRASSVGAQPGIT-----KGI----QWFSLENGVK 147
Query: 324 VVDTPG 329
++DTPG
Sbjct: 148 ILDTPG 153
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 32.0 bits (72), Expect = 0.37
Identities = 18/157 (11%), Positives = 34/157 (21%), Gaps = 27/157 (17%)
Query: 266 MVVGESGLGKSTLVNSLFLS-----DLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320
+V G GKS L L DL ++ G + + +
Sbjct: 34 ALVSPGGAGKSMLALQLAAQIAGGPDLLEVGEL-----PTGPVIYL---PAEDPPTAIHH 85
Query: 321 RLTVVDTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVK 380
RL + + + ++
Sbjct: 86 RLHALGAHLSAE------------ERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEG 133
Query: 381 LRLTVVDTPG--FGDSINSEESWRACCSYIDDQFRQY 415
RL V+DT + N+ ++
Sbjct: 134 RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 31.8 bits (73), Expect = 0.38
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 24/75 (32%)
Query: 262 DFTLMVVGESGLGKSTL----VNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIE 314
++ L+VVG G+GKS L + + F+ + TIE +K + I+
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYD---------------PTIEDSYRKQVVID 48
Query: 315 ERGVKLRLTVVDTPG 329
L ++DT G
Sbjct: 49 GETCLLD--ILDTAG 61
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.5 bits (74), Expect = 0.42
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 265 LMVVGESGLGKSTLVNSLF--LSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315
L++VG++G GK+ ++ ++ G I+ K + E
Sbjct: 926 LILVGKAGCGKTATWKTVIDAMAIFDG---------HANVVYVIDTKVLTKES 969
Score = 29.8 bits (67), Expect = 3.2
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 102 LMVVGESGLGKSTLVNSL 119
L++VG++G GK+ ++
Sbjct: 926 LILVGKAGCGKTATWKTV 943
Score = 29.8 bits (67), Expect = 3.2
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 201 LMVVGESGLGKSTLVNSL 218
L++VG++G GK+ ++
Sbjct: 926 LILVGKAGCGKTATWKTV 943
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.45
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 9/46 (19%)
Query: 15 APPTPPPRTPKRVRTL------PR-RNWTSKISE--ENGDVYCLSC 51
+ R +R L P + + KI E GDV C C
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALC 48
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 31.4 bits (72), Expect = 0.49
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 26/112 (23%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLR 321
+ + +VG GKS LV+ +L+ Y + P KK + ++ +
Sbjct: 20 ELKVGIVGNLSSGKSALVHR-YLTGTYVQEESPEGGRF--------KKEIVVDGQSYL-- 68
Query: 322 LTVVDTPG---F-----GD------SINSEESWRACCSYIDDQFRQYFNDEN 359
L + D G D S+ E S++ +Y + + N
Sbjct: 69 LLIRDEGGPPELQFAAWVDAVVFVFSLEDEISFQTVYNYF-LRLCSFRNASE 119
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 31.1 bits (71), Expect = 0.53
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 32/121 (26%)
Query: 256 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMD 312
S++ + L V+G++ GKS+L++ FL+ Y T KK M
Sbjct: 1 SMRSIPELRLGVLGDARSGKSSLIHR-FLTGSYQV-----------LEKTESEQYKKEML 48
Query: 313 IEERGVKLRLTVVDTPG--------FGD------SINSEESWRACCSYIDDQFRQYFNDE 358
++ + + + + G + D S+ E S++A Q +
Sbjct: 49 VDGQTHL--VLIREEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLH-GQLSSLRGEG 105
Query: 359 N 359
Sbjct: 106 R 106
Score = 27.6 bits (62), Expect = 8.5
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 93 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLY-------GD--RKVPNVNGSNTVIEV 142
S++ + L V+G++ GKS+L++ FL+ Y + +K V+G ++ +
Sbjct: 1 SMRSIPELRLGVLGDARSGKSSLIHR-FLTGSYQVLEKTESEQYKKEMLVDGQTHLVLI 58
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 31.2 bits (71), Expect = 0.55
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTI----EKKSMDIE-ERG 317
LM+VG +G GK+TL+ + +D ++ T+ + + I +R
Sbjct: 3 MKLMIVGNTGSGKTTLLQQ-LMKTKK--------SDLGMQSATVGIDVKDWPIQIRDKRK 53
Query: 318 VKLRLTVVDTPG 329
L L V D G
Sbjct: 54 RDLVLNVWDFAG 65
Score = 30.4 bits (69), Expect = 1.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 100 FTLMVVGESGLGKSTLVN 117
LM+VG +G GK+TL+
Sbjct: 3 MKLMIVGNTGSGKTTLLQ 20
Score = 30.4 bits (69), Expect = 1.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 199 FTLMVVGESGLGKSTLVN 216
LM+VG +G GK+TL+
Sbjct: 3 MKLMIVGNTGSGKTTLLQ 20
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.59
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 307 EKKSMD-IEERGVKLRLTVVDT-PGFGDSINS 336
EK+++ ++ L+L D+ P +I +
Sbjct: 18 EKQALKKLQAS---LKLYADDSAPAL--AIKA 44
Score = 30.7 bits (68), Expect = 0.59
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 368 EKKSMD-IEERGVKLRLTVVDT-PGFGDSINS 397
EK+++ ++ L+L D+ P +I +
Sbjct: 18 EKQALKKLQAS---LKLYADDSAPAL--AIKA 44
Score = 30.7 bits (68), Expect = 0.62
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 21/49 (42%)
Query: 190 RKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSI 238
++++KK L SL LY D P + K ++
Sbjct: 19 KQALKK------------------LQASL---KLYADDSAPALAIKATM 46
Score = 28.4 bits (62), Expect = 3.4
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 23/47 (48%)
Query: 485 QCLSQISQRGDRGKLKK---DSAPDGLITETDRLLLEKDEELVKSTI 528
Q L ++ LK DSAP L +K+T+
Sbjct: 20 QALKKLQ-----ASLKLYADDSAP-ALA--------------IKATM 46
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 31.0 bits (71), Expect = 0.59
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 248 LPEQVHRKSVKKGF------DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301
+ H S ++ + L ++G G GKS L FL+ + PN+ D
Sbjct: 1 MHHHHHHSSGRENLYFQGPLEVNLAILGRRGAGKSALTVK-FLTKRFISEYDPNLEDTYS 59
Query: 302 KTTTIEKKSMDIEERGVKLRLTVVDTPG 329
T++ + + + V+DT
Sbjct: 60 SEETVDHQPVHLR---------VMDTAD 78
Score = 27.5 bits (62), Expect = 7.7
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 22/81 (27%)
Query: 85 LPEQVHRKSVKKGF------DFTLMVVGESGLGKSTL----VNSLFLS-------DLYGD 127
+ H S ++ + L ++G G GKS L + F+S D Y
Sbjct: 1 MHHHHHHSSGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-- 58
Query: 128 RKVPNVNGSNTVIEV---AGT 145
V+ + V A
Sbjct: 59 SSEETVDHQPVHLRVMDTADL 79
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 30.9 bits (71), Expect = 0.60
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGVK 319
F +M+VGESG+GKSTL F E ++ + +++ V
Sbjct: 3 FKVMLVGESGVGKSTLA-GTFGGLQGDHAHEM---------ENSEDTYERRIMVDKEEVT 52
Query: 320 LRLTVVDTPG 329
L V D
Sbjct: 53 LI--VYDIWE 60
Score = 27.1 bits (61), Expect = 9.7
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 100 FTLMVVGESGLGKSTLV 116
F +M+VGESG+GKSTL
Sbjct: 3 FKVMLVGESGVGKSTLA 19
Score = 27.1 bits (61), Expect = 9.7
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 199 FTLMVVGESGLGKSTLV 215
F +M+VGESG+GKSTL
Sbjct: 3 FKVMLVGESGVGKSTLA 19
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 30.5 bits (70), Expect = 0.65
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 24/75 (32%)
Query: 262 DFTLMVVGESGLGKSTL----VNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIE 314
++ L+VVG G+GKS L + + F+ + TIE +K + I+
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECD---------------PTIEDSYRKQVVID 47
Query: 315 ERGVKLRLTVVDTPG 329
L ++DT G
Sbjct: 48 GETCL--LDILDTAG 60
Score = 27.5 bits (62), Expect = 8.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 99 DFTLMVVGESGLGKSTL----VNSLFLSDLY---GD--RKVPNVNGSNTVIEV---AGT 145
++ L+VVG G+GKS L + + F+ + D RK ++G ++++ AG
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 30.6 bits (70), Expect = 0.71
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGV 318
++ L+VVG G+GKS L + + + D P TIE +K + I+
Sbjct: 21 EYKLVVVGAGGVGKSALTIQ-LIQNHFVDEYDP----------TIEDSYRKQVVIDGETC 69
Query: 319 KLRLTVVDTPG 329
L ++DT G
Sbjct: 70 LLD--ILDTAG 78
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 30.6 bits (70), Expect = 0.73
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 16/71 (22%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGV 318
+ ++G +GKS+L F+ + D P TIE K + + +
Sbjct: 6 SRKIAILGYRSVGKSSLTIQ-FVEGQFVDSYDP----------TIENTFTKLITVNGQEY 54
Query: 319 KLRLTVVDTPG 329
L +VDT G
Sbjct: 55 H--LQLVDTAG 63
Score = 27.5 bits (62), Expect = 8.8
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 99 DFTLMVVGESGLGKSTL----VNSLFLSDLY---GD--RKVPNVNGSNTVIEV---AGT 145
+ ++G +GKS+L V F+ + K+ VNG +++ AG
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 30.7 bits (70), Expect = 0.77
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGVK 319
+++VG G+GKS L F+ D + + P T +K + ++ V+
Sbjct: 15 HKVIMVGSGGVGKSALTLQ-FMYDEFVEDYEP----------TKADSYRKKVVLDGEEVQ 63
Query: 320 LRLTVVDTPG 329
+ ++DT G
Sbjct: 64 ID--ILDTAG 71
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 31.2 bits (71), Expect = 0.80
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 104 VVGESGLGKSTLVNSLF-LSDLYGDRKVPNVN 134
++G +G GKSTL+++ L + G+ ++ V+
Sbjct: 52 LLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVS 83
Score = 31.2 bits (71), Expect = 0.80
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 203 VVGESGLGKSTLVNSLF-LSDLYGDRKVPNVN 233
++G +G GKSTL+++ L + G+ ++ V+
Sbjct: 52 LLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVS 83
Score = 31.2 bits (71), Expect = 0.80
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 267 VVGESGLGKSTLVNSLF-LSDLYGDRKVPNVN 297
++G +G GKSTL+++ L + G+ ++ V+
Sbjct: 52 LLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVS 83
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 30.2 bits (69), Expect = 1.0
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 258 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEE 315
K F L+++GES +GKS+LV F+ + ++ Q T +++ +++
Sbjct: 2 NKICQFKLVLLGESAVGKSSLV-LRFVKGQF--------HEFQESTIGAAFLTQTVCLDD 52
Query: 316 RGVKL 320
VK
Sbjct: 53 TTVKF 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 30.2 bits (69), Expect = 1.1
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 16/71 (22%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGV 318
++ L+V+G G+GKS L F+ ++ ++ P TIE +K ++++ +
Sbjct: 3 EYKLVVLGSGGVGKSALTVQ-FVQGIFVEKYDP----------TIEDSYRKQVEVDCQQC 51
Query: 319 KLRLTVVDTPG 329
L ++DT G
Sbjct: 52 M--LEILDTAG 60
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 30.3 bits (69), Expect = 1.2
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 244 GFATLPEQVHRKSVKKGFD--FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQG 301
G + V +G D F L+++G S +GK++ + + D +
Sbjct: 2 GSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFR-YADDSF--------TPAFV 52
Query: 302 KTTTIEKKSMDIEERGVKLRLTVVDTPG 329
T I+ K + +++L + DT G
Sbjct: 53 STVGIDFKVKTVYRHDKRIKLQIWDTAG 80
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 30.7 bits (69), Expect = 1.2
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 266 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVV 325
VVG + +GKST +N + + + G V + G TT++ + +E T+
Sbjct: 166 YVVGCTNVGKSTFINRI-IEEATGKGNVITTSYFPG--TTLDMIEIPLES-----GATLY 217
Query: 326 DTPG 329
DTPG
Sbjct: 218 DTPG 221
Score = 28.0 bits (62), Expect = 9.2
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVP 131
VVG + +GKST +N + +
Sbjct: 166 YVVGCTNVGKSTFINRIIEEATGKGNVIT 194
Score = 28.0 bits (62), Expect = 9.2
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 202 MVVGESGLGKSTLVNSLFLSDLYGDRKVP 230
VVG + +GKST +N + +
Sbjct: 166 YVVGCTNVGKSTFINRIIEEATGKGNVIT 194
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 30.2 bits (69), Expect = 1.2
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGVK 319
+++VG G+GKS L F+ D + + P T +K + ++ V+
Sbjct: 19 HKVIMVGSGGVGKSALTLQ-FMYDEFVEDYEP----------TKADSYRKKVVLDGEEVQ 67
Query: 320 LRLTVVDTPG 329
+ ++DT G
Sbjct: 68 --IDILDTAG 75
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 30.7 bits (69), Expect = 1.2
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 103 MVVGESGLGKSTLVNSLFLSDLYGDRKV 130
++ + G GKS L L + +V
Sbjct: 39 TILAKPGAGKSFTAKMLLLREYMQGSRV 66
Score = 30.7 bits (69), Expect = 1.2
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 202 MVVGESGLGKSTLVNSLFLSDLYGDRKV 229
++ + G GKS L L + +V
Sbjct: 39 TILAKPGAGKSFTAKMLLLREYMQGSRV 66
Score = 30.7 bits (69), Expect = 1.2
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 266 MVVGESGLGKSTLVNSLFLSDLYGDRKV 293
++ + G GKS L L + +V
Sbjct: 39 TILAKPGAGKSFTAKMLLLREYMQGSRV 66
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 30.6 bits (68), Expect = 1.3
Identities = 18/152 (11%), Positives = 48/152 (31%), Gaps = 18/152 (11%)
Query: 266 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVV 325
+ G +G GKST + + +P++ + TT + ++G+ +L
Sbjct: 33 TLSGGNGAGKSTTMAGFVTA------LIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAG 86
Query: 326 DTPGFGDSINSEESWRACCSYIDDQFRQYFNDENRQGKTTTIEKKSMDIEERGVKLRLTV 385
+++NS + G+ ++ + ++ + +
Sbjct: 87 VCYAVLETVNSRAQRIITGVRLQQ----------IAGRDKKVDIRPFSLQNVPMTDSVIS 136
Query: 386 VDTPGFGD--SINSEESWRACCSYIDDQFRQY 415
+ T + + S + F+ Y
Sbjct: 137 LFTEQVANKARVLSLNDLKEKFEETAVTFKPY 168
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 30.9 bits (70), Expect = 1.3
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 9/91 (9%)
Query: 286 DLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGDSINSEESWR---- 341
+Y +P + + R + + E R
Sbjct: 258 AMYRPEDMPAPIRAANPDIEAAQHPLMKFYVDSIRRGSFFQGAEGSGATLDEAELRQMRA 317
Query: 342 ---ACCSYIDDQFRQYFN--DENRQGKTTTI 367
+ +DD + F+ DE Q T I
Sbjct: 318 TYCGLITEVDDCLGRVFSYLDETGQWDDTLI 348
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 29.7 bits (68), Expect = 1.3
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE-KKSMDIEERGVKL 320
++ ++V+G G+GKS L F++ + ++ P TIE +IE
Sbjct: 3 EYKVVVLGSGGVGKSALTVQ-FVTGTFIEKYDP----------TIEDFYRKEIEVDSSPS 51
Query: 321 RLTVVDTPG 329
L ++DT G
Sbjct: 52 VLEILDTAG 60
Score = 27.1 bits (61), Expect = 9.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 99 DFTLMVVGESGLGKSTL----VNSLFLSDLY---GD--RKVPNVNGSNTVIEV---AGT 145
++ ++V+G G+GKS L V F+ D RK V+ S +V+E+ AGT
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 17/70 (24%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGVK 319
+ ++++G G+GKS L + + +S+ ++
Sbjct: 3 YKVLLLGAPGVGKSALA--RIFGGVEDGPEAE----------AAGHTYDRSIVVDGEEAS 50
Query: 320 LRLTVVDTPG 329
L V D
Sbjct: 51 LM--VYDIWE 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 29.8 bits (68), Expect = 1.4
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGVK 319
+++VG G+GKS L F+ D + + P T +K + ++ V+
Sbjct: 5 HKVIMVGSGGVGKSALTLQ-FMYDEFVEDYEP----------TKADSYRKKVVLDGEEVQ 53
Query: 320 LRLTVVDTPG 329
+ ++DT G
Sbjct: 54 --IDILDTAG 61
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 30.1 bits (67), Expect = 1.4
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVA 143
+V G G+GKST++ + +N + ++ A
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.5
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 13/68 (19%)
Query: 314 EERGVKLRLTVVDTPGFGDSINSEESWRA-CCSYIDDQFRQYFN------DENRQGKTTT 366
EE+ + RL +D S E+ WR +++ ++ NR
Sbjct: 92 EEQ--RKRLQELDA----ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Query: 367 IEKKSMDI 374
++ DI
Sbjct: 146 YQQPDADI 153
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 29.5 bits (67), Expect = 1.8
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 17/76 (22%)
Query: 258 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE----KKSMDI 313
+K F +M+VGESG+GKSTL F P ++ + +
Sbjct: 19 QKDGIFKVMLVGESGVGKSTLA-GTFGGLQGDSAHEP----------ENPEDTYERRIMV 67
Query: 314 EERGVKLRLTVVDTPG 329
++ V L V D
Sbjct: 68 DKEEVTLV--VYDIWE 81
Score = 27.6 bits (62), Expect = 7.9
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 15/65 (23%)
Query: 95 KKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGD-----------RKVPNVNGSNTVIEV- 142
+K F +M+VGESG+GKSTL F + V+ + V
Sbjct: 19 QKDGIFKVMLVGESGVGKSTLA-GTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77
Query: 143 --AGT 145
Sbjct: 78 DIWEQ 82
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 29.4 bits (67), Expect = 1.8
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGV 318
+ F ++++GE +GK++LV + + + ND+ T K ++I + V
Sbjct: 5 YSFKVVLLGEGCVGKTSLV-LRYCENKF--------NDKHITTLGASFLTKKLNIGGKRV 55
Query: 319 KL 320
L
Sbjct: 56 NL 57
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 29.6 bits (67), Expect = 2.1
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGVKL 320
+ VVGE+ +GKS L+ S+F K T+ +E + I + V +
Sbjct: 21 CKVAVVGEATVGKSALI-SMFT------SKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73
Query: 321 RLTVVDTPG 329
L ++DT G
Sbjct: 74 ELFLLDTAG 82
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 29.5 bits (67), Expect = 2.2
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGV 318
++++G +GK++L F+ + + P T+E K + + +
Sbjct: 24 YRKVVILGYRCVGKTSLA-HQFVEGEFSEGYDP----------TVENTYSKIVTLGKDEF 72
Query: 319 KLRLTVVDTPG 329
L +VDT G
Sbjct: 73 HLH--LVDTAG 81
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 29.4 bits (67), Expect = 2.2
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 261 FDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGV 318
+ L+++G+ G GKS+LV F+ D + + Q T +++ + + V
Sbjct: 11 INAKLVLLGDVGAGKSSLV-LRFVKDQF--------VEFQESTIGAAFFSQTLAVNDATV 61
Query: 319 KL 320
K
Sbjct: 62 KF 63
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 29.4 bits (67), Expect = 2.2
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 93 SVKKGFDFTLMVVGESGLGKSTLVN 117
SVKKG +F + ++G SG GKSTL+
Sbjct: 26 SVKKG-EF-VSIIGASGSGKSTLLY 48
Score = 29.4 bits (67), Expect = 2.2
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 192 SVKKGFDFTLMVVGESGLGKSTLVN 216
SVKKG +F + ++G SG GKSTL+
Sbjct: 26 SVKKG-EF-VSIIGASGSGKSTLLY 48
Score = 29.4 bits (67), Expect = 2.2
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 256 SVKKGFDFTLMVVGESGLGKSTLVN 280
SVKKG +F + ++G SG GKSTL+
Sbjct: 26 SVKKG-EF-VSIIGASGSGKSTLLY 48
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.1 bits (69), Expect = 2.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 104 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 131
V G SG GKS+LV + L+ +
Sbjct: 615 VTGVSGSGKSSLVMETLYPALMNLLHKTKLPA 646
Score = 30.1 bits (69), Expect = 2.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 203 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 230
V G SG GKS+LV + L+ +
Sbjct: 615 VTGVSGSGKSSLVMETLYPALMNLLHKTKLPA 646
Score = 30.1 bits (69), Expect = 2.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 267 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 294
V G SG GKS+LV + L+ +
Sbjct: 615 VTGVSGSGKSSLVMETLYPALMNLLHKTKLPA 646
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 29.8 bits (68), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 104 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 131
V G SG GKSTLVN + L+ + P
Sbjct: 353 VTGVSGSGKSTLVNEVLYKALAQKLHRAKAKP 384
Score = 29.8 bits (68), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 203 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 230
V G SG GKSTLVN + L+ + P
Sbjct: 353 VTGVSGSGKSTLVNEVLYKALAQKLHRAKAKP 384
Score = 29.8 bits (68), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 267 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 294
V G SG GKSTLVN + L+ + P
Sbjct: 353 VTGVSGSGKSTLVNEVLYKALAQKLHRAKAKP 384
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 29.1 bits (66), Expect = 2.4
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGVKL 320
+ ++G++G+GKS++V F+ D + + T K++ K
Sbjct: 24 LKVCLLGDTGVGKSSIV-CRFVQDHF--------DHNISPTIGASFMTKTVPCGNELHKF 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 29.3 bits (66), Expect = 2.6
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 267 VVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTT-TIEKKSMDIEE-RGVKLRLTV 324
G GK+T + ++ G + + + T + +DI E +G K R +
Sbjct: 19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHL 78
Query: 325 VDTPG 329
PG
Sbjct: 79 YTVPG 83
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 29.1 bits (66), Expect = 2.7
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGV 318
+ L+VVG+ G+GKS L F ++ D P TIE K +I+ +
Sbjct: 18 TYKLVVVGDGGVGKSALTIQ-FFQKIFVDDYDP----------TIEDSYLKHTEIDNQWA 66
Query: 319 KLRLTVVDTPG 329
L V+DT G
Sbjct: 67 ILD--VLDTAG 75
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 29.8 bits (68), Expect = 2.7
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 104 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 131
V G SG GKSTLVN + + L G R+VP
Sbjct: 673 VTGVSGSGKSTLVNDILAAVLANRLNGARQVP 704
Score = 29.8 bits (68), Expect = 2.7
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 203 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 230
V G SG GKSTLVN + + L G R+VP
Sbjct: 673 VTGVSGSGKSTLVNDILAAVLANRLNGARQVP 704
Score = 29.8 bits (68), Expect = 2.7
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 267 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 294
V G SG GKSTLVN + + L G R+VP
Sbjct: 673 VTGVSGSGKSTLVNDILAAVLANRLNGARQVP 704
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 29.1 bits (66), Expect = 2.8
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 93 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152
+++G L V G +G GK++L+ + + +L G I+ +G Q+
Sbjct: 30 KIERGQ--LLAVAGSTGAGKTSLLMMI-MGEL------EPSEGK---IKHSGRISFCSQF 77
Query: 153 PW 154
W
Sbjct: 78 SW 79
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 29.0 bits (65), Expect = 2.8
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
+VVG+ +GK+ L+ S + ++ + +P V + S ++ G + L +
Sbjct: 8 CVVVGDGAVGKTCLLIS-YTTNAFPGEYIPTV---------FDNYSANVMVDGKPVNLGL 57
Query: 325 VDTPGFGD 332
DT G D
Sbjct: 58 WDTAGQED 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 29.1 bits (66), Expect = 2.9
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GK+ ++ F D + N T I+ K IE G +++L
Sbjct: 9 FKLLLIGDSGVGKTCVL-FRFSEDAF--------NSTFISTIGIDFKIRTIELDGKRIKL 59
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 60 QIWDTAG 66
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 29.2 bits (66), Expect = 2.9
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGVKL 320
F L+ +GE +GK++L+ + F+ D + ++ T I+ K+M +E+R V+L
Sbjct: 17 FKLVFLGEQSVGKTSLI-TRFMYDSF--------DNTYQATIGIDFLSKTMYLEDRTVRL 67
Query: 321 RL 322
+L
Sbjct: 68 QL 69
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 28.6 bits (64), Expect = 3.1
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGVKL 320
L+++GE+ +GKS++V F+S+ + + + T + + I E VK
Sbjct: 4 IKLVLLGEAAVGKSSIV-LRFVSNDF--------AENKEPTIGAAFLTQRVTINEHTVKF 54
Query: 321 RL 322
+
Sbjct: 55 EI 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 28.7 bits (65), Expect = 3.3
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 11/62 (17%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGVKL 320
F L+ +GE +GK++L+ + F+ D + ++ T I+ K+M +E+R V+L
Sbjct: 15 FKLVFLGEQSVGKTSLI-TRFMYDSF--------DNTYQATIGIDFLSKTMYLEDRTVRL 65
Query: 321 RL 322
+L
Sbjct: 66 QL 67
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 28.7 bits (65), Expect = 3.3
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
++++G+SG+GKS L+ F+ D + N T I+ K ++ G K++L
Sbjct: 4 MKILLIGDSGVGKSCLL-VRFVEDKF--------NPSFITTIGIDFKIKTVDINGKKVKL 54
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 55 QIWDTAG 61
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 29.0 bits (66), Expect = 3.3
Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Query: 93 SVKKGFDFTLMVVGESGLGKSTLVN 117
++K+G +F + ++G SG GKST++N
Sbjct: 27 NIKEG-EF-VSIMGPSGSGKSTMLN 49
Score = 29.0 bits (66), Expect = 3.3
Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Query: 192 SVKKGFDFTLMVVGESGLGKSTLVN 216
++K+G +F + ++G SG GKST++N
Sbjct: 27 NIKEG-EF-VSIMGPSGSGKSTMLN 49
Score = 29.0 bits (66), Expect = 3.3
Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Query: 256 SVKKGFDFTLMVVGESGLGKSTLVN 280
++K+G +F + ++G SG GKST++N
Sbjct: 27 NIKEG-EF-VSIMGPSGSGKSTMLN 49
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 29.1 bits (66), Expect = 3.3
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 93 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152
S+ +G + VVG+ G GKS+L LS L + + V G + + G+ Q
Sbjct: 27 SIPEGA--LVAVVGQVGCGKSSL-----LSALLAE--MDKVEGH---VAIKGSVAYVPQQ 74
Query: 153 PW 154
W
Sbjct: 75 AW 76
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 29.0 bits (65), Expect = 3.3
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 250 EQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKK 309
+++K +VVG+ +GK+ L+ S + ++ + +P V D
Sbjct: 24 LYFQGQAIK------CVVVGDGAVGKTCLLIS-YTTNAFPGEYIPTVFD---------NY 67
Query: 310 SMDIEERGVKLRLTVVDTPGFGD 332
S ++ G + L + DT G D
Sbjct: 68 SANVMVDGKPVNLGLWDTAGQED 90
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 28.8 bits (65), Expect = 3.4
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 246 ATLPEQVHRKSVKKGFD--FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303
+ L K +D ++++G+SG+GKS L+ F+ D + N T
Sbjct: 2 SGLRTVSASSGNGKSYDSIMKILLIGDSGVGKSCLL-VRFVEDKF--------NPSFITT 52
Query: 304 TTIEKKSMDIEERGVKLRLTVVDTPG 329
I+ K ++ G K++L + DT G
Sbjct: 53 IGIDFKIKTVDINGKKVKLQLWDTAG 78
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 29.4 bits (67), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 104 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 131
V G SG GKSTLVN + L+ + P
Sbjct: 655 VTGVSGSGKSTLVNEVLYKALAQKLHRAKAKP 686
Score = 29.4 bits (67), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 203 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 230
V G SG GKSTLVN + L+ + P
Sbjct: 655 VTGVSGSGKSTLVNEVLYKALAQKLHRAKAKP 686
Score = 29.4 bits (67), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 267 VVGESGLGKSTLVNSLFL----SDLYGDRKVP 294
V G SG GKSTLVN + L+ + P
Sbjct: 655 VTGVSGSGKSTLVNEVLYKALAQKLHRAKAKP 686
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 28.8 bits (65), Expect = 3.5
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN--VNDRQGKTTTIEKKSMDIEERGVKL 320
+ + ++G+ G+GK+T +N L + + + G +
Sbjct: 12 YKICLIGDGGVGKTTYINR-VLDGRFEKNYNATVGAVNHPVTFLDDQ---------GNVI 61
Query: 321 RLTVVDTPG 329
+ V DT G
Sbjct: 62 KFNVWDTAG 70
Score = 28.4 bits (64), Expect = 4.7
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 100 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVP---NVNGSNTVIEVAGTKVR 148
+ + ++G+ G+GK+T +N L + VN T ++ G ++
Sbjct: 12 YKICLIGDGGVGKTTYINR-VLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62
Score = 28.4 bits (64), Expect = 5.4
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 199 FTLMVVGESGLGKSTLVN 216
+ + ++G+ G+GK+T +N
Sbjct: 12 YKICLIGDGGVGKTTYIN 29
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 28.8 bits (65), Expect = 3.6
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 262 DFTLMVVGESGLGKSTLVNSLF-LSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKL 320
+ ++++GE G+GKSTL N + D D +T ++ +S I
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATII------ 59
Query: 321 RLTVVDTPG 329
L + + G
Sbjct: 60 LLDMWENKG 68
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 28.5 bits (64), Expect = 3.7
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
++VG+ +GK++LV S + ++ Y +P + S + G +RL +
Sbjct: 23 CVLVGDGAVGKTSLVVS-YTTNGYPTEYIPTA---------FDNFSAVVSVDGRPVRLQL 72
Query: 325 VDTPGFGD 332
DT G +
Sbjct: 73 CDTAGQDE 80
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 28.8 bits (65), Expect = 3.7
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L++VG++ +GK+ +V F + + ++RQG T ++ +E +G +++L
Sbjct: 30 FKLVLVGDASVGKTCVV-QRFKTGAF--------SERQGSTIGVDFTMKTLEIQGKRVKL 80
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 81 QIWDTAG 87
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 28.6 bits (65), Expect = 3.8
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGVKL 320
++VVG +GKS+++ + ++ KT ++ ++ + + + V+L
Sbjct: 6 IKMVVVGNGAVGKSSMIQR-YCKGIF--------TKDYKKTIGVDFLERQIQVNDEDVRL 56
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 28.7 bits (65), Expect = 3.8
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F ++V+G+S +GK+ L F + + DR T ++ + ++ G ++++
Sbjct: 21 FKIIVIGDSNVGKTCLT-YRFCAGRF--------PDRTEATIGVDFRERAVDIDGERIKI 71
Query: 323 TVVDTPG---FGDSINS 336
+ DT G F S+
Sbjct: 72 QLWDTAGQERFRKSMVQ 88
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 28.7 bits (65), Expect = 3.9
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
++++G G+GK++L+ F D + + T ++ K +E RG K+RL
Sbjct: 27 LQVIIIGSRGVGKTSLMER-FTDDTF--------CEACKSTVGVDFKIKTVELRGKKIRL 77
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 78 QIWDTAG 84
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.8 bits (64), Expect = 3.9
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
L+++G SG GKS++ + +F R G T +E + + L +
Sbjct: 6 LLLMGRSGSGKSSMRSIIF------SNYSAFDTRRLGATIDVEHSHLRFLG---NMTLNL 56
Query: 325 VDTPG 329
D G
Sbjct: 57 WDCGG 61
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 28.4 bits (64), Expect = 4.1
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F ++++G +G+GK+ LV F L+ QG T ++ +E G K++L
Sbjct: 27 FKIVLIGNAGVGKTCLV-RRFTQGLF--------PPGQGATIGVDFMIKTVEINGEKVKL 77
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 78 QIWDTAG 84
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 28.8 bits (65), Expect = 4.7
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 93 SVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVAGTKVRGRQY 152
+++G L V G +G GK++L+ + + +L G I+ +G Q
Sbjct: 60 KIERGQ--LLAVAGSTGAGKTSLLMMI-MGEL------EPSEGK---IKHSGRISFCSQN 107
Query: 153 PW 154
W
Sbjct: 108 SW 109
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 28.8 bits (65), Expect = 4.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 104 VVGESGLGKSTLV 116
V+G SG GKSTL+
Sbjct: 59 VIGASGAGKSTLI 71
Score = 28.8 bits (65), Expect = 4.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 203 VVGESGLGKSTLV 215
V+G SG GKSTL+
Sbjct: 59 VIGASGAGKSTLI 71
Score = 28.8 bits (65), Expect = 4.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 267 VVGESGLGKSTLV 279
V+G SG GKSTL+
Sbjct: 59 VIGASGAGKSTLI 71
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 28.8 bits (65), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 102 LMVVGESGLGKSTLVNSLFLSDLY 125
L+V G +G G S VN++ LS LY
Sbjct: 170 LLVAGTTGSGASVGVNAMILSMLY 193
Score = 28.8 bits (65), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 201 LMVVGESGLGKSTLVNSLFLSDLY 224
L+V G +G G S VN++ LS LY
Sbjct: 170 LLVAGTTGSGASVGVNAMILSMLY 193
Score = 28.8 bits (65), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLY 288
L+V G +G G S VN++ LS LY
Sbjct: 170 LLVAGTTGSGASVGVNAMILSMLY 193
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 28.4 bits (64), Expect = 5.1
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GKS L+ F D Y + T ++ K IE G ++L
Sbjct: 34 FKLLLIGDSGVGKSCLLLR-FADDTY--------TESYISTIGVDFKIRTIELDGKTIKL 84
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 85 QIWDTAG 91
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 28.9 bits (65), Expect = 5.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 102 LMVVGESGLGKSTLVNSLFLSDLY 125
L+V G +G GKS VN++ LS L+
Sbjct: 217 LLVAGTTGSGKSVGVNAMLLSILF 240
Score = 28.9 bits (65), Expect = 5.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 201 LMVVGESGLGKSTLVNSLFLSDLY 224
L+V G +G GKS VN++ LS L+
Sbjct: 217 LLVAGTTGSGKSVGVNAMLLSILF 240
Score = 28.9 bits (65), Expect = 5.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLY 288
L+V G +G GKS VN++ LS L+
Sbjct: 217 LLVAGTTGSGKSVGVNAMLLSILF 240
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 28.5 bits (63), Expect = 5.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEE 315
++ VG +G GK+TL L + KV VN G + S+D+ E
Sbjct: 15 MIVVFVGTAGSGKTTLTGEF-GRYLEDNYKVAYVNLDTGVKELPYEPSIDVRE 66
Score = 28.5 bits (63), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 100 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 134
++ VG +G GK+TL L + KV VN
Sbjct: 15 MIVVFVGTAGSGKTTLTGEF-GRYLEDNYKVAYVN 48
Score = 28.5 bits (63), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 199 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN 233
++ VG +G GK+TL L + KV VN
Sbjct: 15 MIVVFVGTAGSGKTTLTGEF-GRYLEDNYKVAYVN 48
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 28.0 bits (63), Expect = 5.5
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G S +GK++ + + D + T I+ K + +++L
Sbjct: 24 FKLLIIGNSSVGKTSFLFR-YADDTF--------TPAFVSTVGIDFKVKTVYRHEKRVKL 74
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 75 QIWDTAG 81
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 27.9 bits (63), Expect = 5.5
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 16/71 (22%)
Query: 262 DFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE---KKSMDIEERGV 318
L+VVG G+GKS L F+ + P TIE K ++
Sbjct: 9 THKLVVVGGGGVGKSALTIQ-FIQSYFVSDYDP----------TIEDSYTKICSVDGIPA 57
Query: 319 KLRLTVVDTPG 329
+ L ++DT G
Sbjct: 58 R--LDILDTAG 66
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 28.1 bits (63), Expect = 5.6
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN-DRQGKTTTIE-KKSMDIEERGVKL 320
L+ +G+SG+GK+T + + + + + + V D + K + + K+
Sbjct: 26 IKLLALGDSGVGKTTFL-YRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 321 RLTVVDTPG 329
L + DT G
Sbjct: 85 HLQLWDTAG 93
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 28.0 bits (63), Expect = 5.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
++++GESG+GKS+L+ F D + + T ++ K I G K +L
Sbjct: 16 LKILIIGESGVGKSSLLLR-FTDDTF--------DPELAATIGVDFKVKTISVDGNKAKL 66
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 67 AIWDTAG 73
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 28.0 bits (63), Expect = 5.8
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F ++++G S +GK++ + + D + T I+ K I +++L
Sbjct: 9 FKILIIGNSSVGKTSFLFR-YADDSF--------TPAFVSTVGIDFKVKTIYRNDKRIKL 59
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 60 QIWDTAG 66
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 28.7 bits (65), Expect = 5.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 235 KGSIPYSDIGFATLPEQVHRKSVKKGFDFTL----MV--VGESGLGKSTLVN 280
+G I + ++ F+ + K V K F + V VG +G GK+T+VN
Sbjct: 352 RGEIEFKNVWFSYDKK----KPVLKDITFHIKPGQKVALVGPTGSGKTTIVN 399
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 27.8 bits (63), Expect = 6.0
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGVKL 320
+ ++G++G+GKS+++ F+ D + + T K++ + K
Sbjct: 7 LKVCLLGDTGVGKSSIM-WRFVEDSF--------DPNINPTIGASFMTKTVQYQNELHKF 57
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.9 bits (63), Expect = 6.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 101 TLMVVGESGLGKSTLVNSLFLSD 123
TL+++G SG+G+S + N+L +
Sbjct: 21 TLVLIGASGVGRSHIKNALLSQN 43
Score = 27.9 bits (63), Expect = 6.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 200 TLMVVGESGLGKSTLVNSLFLSD 222
TL+++G SG+G+S + N+L +
Sbjct: 21 TLVLIGASGVGRSHIKNALLSQN 43
Score = 27.9 bits (63), Expect = 6.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 264 TLMVVGESGLGKSTLVNSLFLSD 286
TL+++G SG+G+S + N+L +
Sbjct: 21 TLVLIGASGVGRSHIKNALLSQN 43
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 28.1 bits (63), Expect = 6.2
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 241 SDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQ 300
SD+ + +K++K ++VVG+ +GK+ L+ + F VP
Sbjct: 8 SDMNTGAGKIENGKKALK------IVVVGDGAVGKTCLLLA-FSKGEIPTAYVP------ 54
Query: 301 GKTTTIEKKSMDIEERGVKLRLTVVDTPG 329
T E S ++ + + L + DT G
Sbjct: 55 ---TVFENFSHVMKYKNEEFILHLWDTAG 80
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 28.1 bits (62), Expect = 6.2
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 86 PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 119
+ H + +++ GE+ +GKS L +L
Sbjct: 4 KQTWHANFLVID-KMGVLITGEANIGKSELSLAL 36
Score = 28.1 bits (62), Expect = 6.2
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 185 PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 218
+ H + +++ GE+ +GKS L +L
Sbjct: 4 KQTWHANFLVID-KMGVLITGEANIGKSELSLAL 36
Score = 28.1 bits (62), Expect = 6.2
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 249 PEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSL 282
+ H + +++ GE+ +GKS L +L
Sbjct: 4 KQTWHANFLVID-KMGVLITGEANIGKSELSLAL 36
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 28.1 bits (63), Expect = 6.4
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 170 SLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLV 215
S + + F ++ S + ++++GE G+GKSTL
Sbjct: 9 SGVDLGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLA 54
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 27.8 bits (62), Expect = 6.5
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 236 GSIPYSDIGFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPN 295
GS A P + K +VVG+ +GK+ L+ S + +D + + VP
Sbjct: 1 GSPGAGRSSMAHGPGALMLK---------CVVVGDGAVGKTCLLMS-YANDAFPEEYVPT 50
Query: 296 VNDRQGKTTTIEKKSMDIEERGVKLRLTVVDTPGFGD 332
V D + T+ G + L + DT G D
Sbjct: 51 VFDHYAVSVTVG---------GKQYLLGLYDTAGQED 78
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 28.0 bits (63), Expect = 6.6
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 258 KKGFD--FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVN-DRQGKTTTIEKKSMDIE 314
+D + +G+SG+GK++++ + + + + V D + K D
Sbjct: 5 DGDYDYLIKFLALGDSGVGKTSVL-YQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 315 -ERGVKLRLTVVDTPG 329
RG ++ L + DT G
Sbjct: 64 VGRGQRIHLQLWDTAG 79
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 27.9 bits (63), Expect = 6.8
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 256 SVKKGFD--FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDI 313
S+ + +D F L+++G+SG+GKS+L+ F + + + T ++ K +
Sbjct: 1 SMARDYDHLFKLLIIGDSGVGKSSLLLR-FADNTF--------SGSYITTIGVDFKIRTV 51
Query: 314 EERGVKLRLTVVDTPG 329
E G K++L + DT G
Sbjct: 52 EINGEKVKLQIWDTAG 67
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 28.0 bits (63), Expect = 6.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F L+++G+SG+GKS L+ F D Y + T ++ K IE G ++L
Sbjct: 17 FKLLLIGDSGVGKSCLLLR-FADDTY--------TESYISTIGVDFKIRTIELDGKTIKL 67
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 68 QIWDTAG 74
>1pn2_A Peroxisomal hydratase-dehydrogenase-epimerase; hot-DOG fold,
hydratase 2 motif, lyase; 1.95A {Candida tropicalis}
SCOP: d.38.1.4 d.38.1.4 PDB: 1pn4_A*
Length = 280
Score = 28.1 bits (62), Expect = 7.2
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 12 PSDAPPTPPPRTPKRVRTLPRRNWTSKISEENGDVYCLSCSP 53
+ P R P +P + + +GD L P
Sbjct: 149 FATNQFLAPKRAPDYQVDVPVSEDLAALYRLSGDRNPLHIDP 190
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 28.3 bits (64), Expect = 7.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 104 VVGESGLGKSTLVN 117
V G SG GKSTLV+
Sbjct: 528 VTGVSGSGKSTLVS 541
Score = 28.3 bits (64), Expect = 7.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 203 VVGESGLGKSTLVN 216
V G SG GKSTLV+
Sbjct: 528 VTGVSGSGKSTLVS 541
Score = 28.3 bits (64), Expect = 7.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 267 VVGESGLGKSTLVN 280
V G SG GKSTLV+
Sbjct: 528 VTGVSGSGKSTLVS 541
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 27.6 bits (62), Expect = 7.4
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F ++++G+SG+GKS L+ S F + + N T +E + I+ G ++
Sbjct: 30 FKVVLIGDSGVGKSNLL-SRFTRNEF--------NLESKSTIGVEFATRSIQVDGKTIKA 80
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 81 QIWDTAG 87
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 28.2 bits (62), Expect = 7.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 100 FTLMVVGESGLGKSTLVNSLFLSDLYGDR 128
++V G+ GK++ + L ++ G R
Sbjct: 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSR 94
Score = 28.2 bits (62), Expect = 7.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 199 FTLMVVGESGLGKSTLVNSLFLSDLYGDR 227
++V G+ GK++ + L ++ G R
Sbjct: 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSR 94
Score = 28.2 bits (62), Expect = 7.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDR 291
++V G+ GK++ + L ++ G R
Sbjct: 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSR 94
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 27.5 bits (62), Expect = 8.1
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGVKL 320
F +++G+ G+GKS L+ F + T +E + +++ + +KL
Sbjct: 16 FKYIIIGDMGVGKSCLL-HQFTEKKF--------MADCPHTIGVEFGTRIIEVSGQKIKL 66
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 27.8 bits (62), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 102 LMVVGESGLGKSTLVNSL 119
++V G+ G GKST V +L
Sbjct: 48 VLVFGDRGTGKSTAVRAL 65
Score = 27.8 bits (62), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 201 LMVVGESGLGKSTLVNSL 218
++V G+ G GKST V +L
Sbjct: 48 VLVFGDRGTGKSTAVRAL 65
Score = 27.8 bits (62), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 265 LMVVGESGLGKSTLVNSL 282
++V G+ G GKST V +L
Sbjct: 48 VLVFGDRGTGKSTAVRAL 65
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 27.7 bits (61), Expect = 8.8
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 103 MVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNGSNTVIEVA 143
+V G G+G +T + V+ + + EVA
Sbjct: 7 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVA 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 27.5 bits (62), Expect = 8.9
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTT-IEKKSMDIEERGVKLR 321
F +M+VG+SG+GK+ L+ F + +T I+ ++ ++ GVK++
Sbjct: 11 FKVMLVGDSGVGKTCLLVR-FKDGAF--------LAGTFISTVGIDFRNKVLDVDGVKVK 61
Query: 322 LTVVDTPG 329
L + DT G
Sbjct: 62 LQMWDTAG 69
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.5 bits (61), Expect = 9.1
Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 17/145 (11%)
Query: 200 TLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNEKGSIPYSDIGFATLPEQVHRKSVKK 259
T+++ G +G GK+T F+ + E G + + R+
Sbjct: 32 TVLLTGGTGTGKTTFAAQ-FIY-----KGAEEYGEPGVF----VTLEERARDLRREMASF 81
Query: 260 GFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVK 319
G+DF GK +V+ + + + DR + ++ +
Sbjct: 82 GWDFEKYEKE----GKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKA--IN 135
Query: 320 LRLTVVDT-PGFGDSINSEESWRAC 343
+ V+D+ P + E R
Sbjct: 136 AKRLVIDSIPSIALRLEEERKIREV 160
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 27.6 bits (62), Expect = 9.1
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIE--KKSMDIEERGVKL 320
F ++++G+SG+GKS L+ S F + + N T +E +S+ ++ + +K
Sbjct: 6 FKVVLIGDSGVGKSNLL-SRFTRNEF--------NLESKSTIGVEFATRSIQVDGKTIKA 56
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 27.4 bits (61), Expect = 9.3
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
++VVG+S GK+ L++ F D + + VP V + + E ++ L++
Sbjct: 31 IVVVGDSQCGKTALLHV-FAKDCFPENYVPTVFE---------NYTASFEIDTQRIELSL 80
Query: 325 VDTPG 329
DT G
Sbjct: 81 WDTSG 85
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 27.6 bits (61), Expect = 9.4
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 265 LMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRLTV 324
++++G GKS++ +F + PN T I K + + +
Sbjct: 23 ILLMGLRRSGKSSIQKVVF------HKMSPNETLFLESTNKIYKDDISNSS---FVNFQI 73
Query: 325 VDTPG 329
D PG
Sbjct: 74 WDFPG 78
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 27.9 bits (62), Expect = 9.6
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 159 GSTVLTPSLIGSLFQTDRDYIGFATLPEQVHRKSVKKGFDFTLM-VVGESGLGKSTLVNS 217
S V T G + Q ++ L + +K K + + + G +G GKS L
Sbjct: 107 TSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAE 166
Query: 218 LF 219
Sbjct: 167 AV 168
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 27.2 bits (61), Expect = 9.7
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 263 FTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKTTTIEKKSMDIEERGVKLRL 322
F ++++GESG+GK+ L+ S F + + + T +E + + ++
Sbjct: 26 FKVVLIGESGVGKTNLL-SRFTRNEF--------SHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 323 TVVDTPG 329
+ DT G
Sbjct: 77 QIWDTAG 83
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 27.4 bits (61), Expect = 9.9
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 244 GFATLPEQVHRKSVKKGFDFTLMVVGESGLGKSTLVNSLFLSDLYGDRKVPNVNDRQGKT 303
A +SVK +++VG+ G GK++L+ + D P
Sbjct: 22 SMAGEEAPPGVRSVK------VVLVGDGGCGKTSLLMV------FADGAFPESYT----P 65
Query: 304 TTIEKKSMDIEERGVKLRLTVVDTPG 329
T E+ ++++ +G + L + DT G
Sbjct: 66 TVFERYMVNLQVKGKPVHLHIWDTAG 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.396
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,084,567
Number of extensions: 485819
Number of successful extensions: 2218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2176
Number of HSP's successfully gapped: 384
Length of query: 541
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 443
Effective length of database: 3,965,535
Effective search space: 1756732005
Effective search space used: 1756732005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)