BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9101
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P08836|FPPS_CHICK Farnesyl pyrophosphate synthase OS=Gallus gallus GN=FDPS PE=1 SV=2
Length = 367
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 106/154 (68%), Gaps = 8/154 (5%)
Query: 106 YKMLAQPSELTPENLHLAQILGWCVEIVSLKTSMGQSLDLSTAN----DLSKFTMDRYEA 161
Y++L + P +HL ++ + +T +GQ LDL TA DLS F+ +RY+A
Sbjct: 154 YRVLKKYCRQRPYYVHLLELFLQ----TAYQTELGQMLDLITAPVSKVDLSHFSEERYKA 209
Query: 162 IVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVT 221
IVKYKTAFYSF LPVA AM+M G+ E H A+ +LLEMG +FQ+QDDYLDCFG P +T
Sbjct: 210 IVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALT 269
Query: 222 GKIGTDIEDGKCSWLAVVALQRATPAQRKLMEVN 255
GK+GTDI+D KCSWL V LQR TP QR+L+E N
Sbjct: 270 GKVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDN 303
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 22/118 (18%)
Query: 16 HDPPLAATNTVLSKDESRDFMAIFPDLVRDLTDAG-RHSDIPDVTKWYAKVLQYNKAISN 74
P L + V+ + E +F+ FP +VRDLT+ G H ++ D A++
Sbjct: 12 QQPALRNLSPVVVEREREEFVGFFPQIVRDLTEDGIGHPEVGD-------------AVAR 58
Query: 75 NVYLGTYFIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEI 132
+ +VLQYN P GK NRGL +V AY+ L+ P + E+L A +GWC+E+
Sbjct: 59 --------LKEVLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIEL 108
>sp|Q8WMY2|FPPS_BOVIN Farnesyl pyrophosphate synthase OS=Bos taurus GN=FDPS PE=1 SV=1
Length = 353
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 96/126 (76%), Gaps = 4/126 (3%)
Query: 134 SLKTSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVE 189
S +T +GQ+LDL TA DL +FT RY++IVKYKTAFYSF LPVA AM+MAG+ +
Sbjct: 164 SYQTEIGQTLDLITAPQGNVDLGRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEK 223
Query: 190 VHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQR 249
H A+ +LLEMG FFQ+QDDYLD FG P +TGKIGTDI+D KCSWL V LQRA+P QR
Sbjct: 224 EHAHAKKILLEMGEFFQIQDDYLDLFGDPSMTGKIGTDIQDNKCSWLVVQCLQRASPEQR 283
Query: 250 KLMEVN 255
++++ N
Sbjct: 284 QILQEN 289
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 24/105 (22%)
Query: 31 ESRDFMAIFPDLVRDLT--DAGRHSDIPDVTKWYAKVLQYNKAISNNVYLGTYFIVQVLQ 88
E +DF+ F +V+ LT D G H +I D AI+ + +VL+
Sbjct: 13 ERQDFIQHFSQIVKVLTEEDIG-HPEIGD-------------AITR--------LKEVLE 50
Query: 89 YNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV 133
YN GK NRGL +V+ ++ L +P + P++L A +GWCVE++
Sbjct: 51 YNAIGGKYNRGLTVVITFRELVEPGKQDPDSLQRALTVGWCVELL 95
>sp|P14324|FPPS_HUMAN Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4
Length = 419
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 95/126 (75%), Gaps = 4/126 (3%)
Query: 134 SLKTSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVE 189
S +T +GQ+LDL TA DL +FT RY++IVKYKTAFYSF LP+A AM+MAG+ +
Sbjct: 230 SYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEK 289
Query: 190 VHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQR 249
H A+ +LLEMG FFQ+QDDYLD FG P VTGKIGTDI+D KCSWL V LQRATP Q
Sbjct: 290 EHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQY 349
Query: 250 KLMEVN 255
++++ N
Sbjct: 350 QILKEN 355
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 22/111 (19%)
Query: 24 NTVLSKDESRDFMAIFPDLVRDLT-DAGRHSDIPDVTKWYAKVLQYNKAISNNVYLGTYF 82
N+ + E +DF+ F +VR LT D H +I D AI+
Sbjct: 72 NSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGD-------------AIAR-------- 110
Query: 83 IVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV 133
+ +VL+YN GK NRGL +VVA++ L +P + ++L A +GWCVE++
Sbjct: 111 LKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 161
>sp|P05369|FPPS_RAT Farnesyl pyrophosphate synthase OS=Rattus norvegicus GN=Fdps PE=2
SV=2
Length = 353
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 94/126 (74%), Gaps = 4/126 (3%)
Query: 134 SLKTSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVE 189
S +T +GQ+LDL TA DL ++T RY++IVKYKTAFYSF LP+A AM+MAG+ +
Sbjct: 164 SYQTEIGQTLDLITAPQGQVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEK 223
Query: 190 VHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQR 249
H A +LLEMG FFQ+QDDYLD FG P VTGK+GTDI+D KCSWL V L RATP QR
Sbjct: 224 EHANALKILLEMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLRATPQQR 283
Query: 250 KLMEVN 255
+++E N
Sbjct: 284 QILEEN 289
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 83 IVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV 133
I +VL+YN GK NRGL +V ++ L +P + E+L A +GWCVE++
Sbjct: 45 IKEVLEYNTVGGKYNRGLTVVQTFQELVEPRKQDAESLQRALTVGWCVELL 95
>sp|Q920E5|FPPS_MOUSE Farnesyl pyrophosphate synthase OS=Mus musculus GN=Fdps PE=2 SV=1
Length = 353
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 94/126 (74%), Gaps = 4/126 (3%)
Query: 134 SLKTSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVE 189
S +T +GQ+LDL TA DL ++T RY++IVKYKTAFYSF LP+A AM+MAG+ +
Sbjct: 164 SYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEK 223
Query: 190 VHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQR 249
H A +L+EMG FFQVQDDYLD FG P VTGK+GTDI+D KCSWL V L RA+P QR
Sbjct: 224 EHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLRASPQQR 283
Query: 250 KLMEVN 255
+++E N
Sbjct: 284 QILEEN 289
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 85 QVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV 133
+VL+YN GK NRGL +V A++ L +P + E+L A +GWCVE++
Sbjct: 47 EVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELL 95
>sp|O14230|FPPS_SCHPO Farnesyl pyrophosphate synthase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=fps1 PE=1 SV=1
Length = 347
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%), Gaps = 4/127 (3%)
Query: 133 VSLKTSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V+ +T +GQ LDL TA DLSKF++ ++ IV YKTAFYSF LPVALAMH+AG+
Sbjct: 155 VTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATP 214
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
E + A+ +L+ +G +FQVQDDYLDC+G P VTGKIGTDI D KCSW+ +AL + TP Q
Sbjct: 215 ENLKCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCTPEQ 274
Query: 249 RKLMEVN 255
R +++ N
Sbjct: 275 RVILDDN 281
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 25/106 (23%)
Query: 30 DESRDFMAIFPDLVRDLTDAGRHSDIPD-VTKWYAKVLQYNKAISNNVYLGTYFIVQVLQ 88
D+ F + P V ++ + + +IPD VT+WY L +N LG
Sbjct: 5 DKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNT-------LG--------- 48
Query: 89 YNVPSGKKNRGLALVVAYK-MLAQPSELTPENLHLAQILGWCVEIV 133
GK NRGL+++ +Y+ +L P L A +LGW VE++
Sbjct: 49 -----GKYNRGLSVIDSYEILLGHP--LDEAAYMKAAVLGWMVELL 87
>sp|P08524|FPPS_YEAST Farnesyl pyrophosphate synthase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ERG20 PE=1 SV=2
Length = 352
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 95/127 (74%), Gaps = 4/127 (3%)
Query: 133 VSLKTSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V+ +T +GQ +DL TA DLSKF++ ++ IV +KTA+YSF LPVALAM++AG+ D
Sbjct: 160 VTFQTELGQLMDLITAPEDKVDLSKFSLKKHSFIVTFKTAYYSFYLPVALAMYVAGITDE 219
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ +QAR +L+ +G +FQ+QDDYLDCFGTP+ GKIGTDI+D KCSW+ AL+ A+ Q
Sbjct: 220 KDLKQARDVLIPLGEYFQIQDDYLDCFGTPEQIGKIGTDIQDNKCSWVINKALELASAEQ 279
Query: 249 RKLMEVN 255
RK ++ N
Sbjct: 280 RKTLDEN 286
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 24/102 (23%)
Query: 35 FMAIFPDLVRDLTDAGRHSDIP-DVTKWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPS 93
F+ +FP LV +L + +P + WYA L YN P
Sbjct: 12 FLNVFPKLVEELNASLLAYGMPKEACDWYA---------------------HSLNYNTPG 50
Query: 94 GKKNRGLALVVAYKMLAQPS--ELTPENLHLAQILGWCVEIV 133
GK NRGL++V Y +L+ + +L E ILGWC+E++
Sbjct: 51 GKLNRGLSVVDTYAILSNKTVEQLGQEEYEKVAILGWCIELL 92
>sp|O24241|FPPS1_PARAR Farnesyl pyrophosphate synthase 1 OS=Parthenium argentatum GN=FPS1
PE=2 SV=1
Length = 342
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 91/127 (71%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V +T+ GQ +DL T DLSK+++ + IV+YKTA+YSF LPVA A+ M G +D+
Sbjct: 153 VEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALLMFG-EDL 211
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
E H + + +L+EMG +FQVQDDYLDCFG P+V GKIGTDIED KCSWL V AL+ + Q
Sbjct: 212 EKHEEVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELSNEEQ 271
Query: 249 RKLMEVN 255
+K++ N
Sbjct: 272 KKILHEN 278
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
++ ++L YNVP GK NRGL+++ +Y++L + ELT + LA LGWC+E
Sbjct: 35 WVEKMLDYNVPGGKLNRGLSVIDSYQLL-KGGELTDNEIFLAAALGWCIE 83
>sp|O24242|FPPS2_PARAR Farnesyl pyrophosphate synthase 2 OS=Parthenium argentatum GN=FPS2
PE=2 SV=1
Length = 342
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 91/127 (71%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V +T+ GQ +DL T DLSK+++ + IV+YKTA+YSF LPVA A+ M G +D+
Sbjct: 153 VEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALLMFG-EDL 211
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
E H + + +L+EMG +FQVQDDYLDCFG P+V GKIGTDIED KCSWL V AL+ A Q
Sbjct: 212 EKHVEVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELANEEQ 271
Query: 249 RKLMEVN 255
+K++ N
Sbjct: 272 KKVLHEN 278
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
+I ++L YNVP GK NRGL+++ +Y++L + +LT + + A LGWCVE
Sbjct: 35 WIEKMLDYNVPGGKLNRGLSVIDSYQLL-KGGKLTDDEIFHASALGWCVE 83
>sp|Q9NH03|FPS_DICDI Farnesyl diphosphate synthase OS=Dictyostelium discoideum GN=fps
PE=2 SV=1
Length = 382
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Query: 134 SLKTSMGQSLDLSTA---NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEV 190
S +T +GQ LDL+T D S FT++ Y IVKYKTA+YSF LPVALAM MAG+
Sbjct: 195 SYQTELGQLLDLTTQPNRGDFSLFTLNTYRRIVKYKTAYYSFYLPVALAMLMAGITSTPA 254
Query: 191 HRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRK 250
A+ +LL MG FFQVQDD+LDC+G+P V GKIG DIE+ KCSW+ A+ TP Q
Sbjct: 255 FSTAKDILLPMGEFFQVQDDFLDCYGSPAVIGKIGRDIEENKCSWMICQAILNGTPEQIN 314
Query: 251 LME 253
L++
Sbjct: 315 LLK 317
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 22/105 (20%)
Query: 28 SKDESRDFMAIFPDLVRDLTDAGRHSDIPDVT-KWYAKVLQYNKAISNNVYLGTYFIVQV 86
+K+E DF+ IFP L ++ D+P T W K++ NV
Sbjct: 34 AKEELADFVEIFPILTNEILKELPGMDMPPQTIAWVEKMI--------NV---------- 75
Query: 87 LQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
NV GK NRGL ++ + ++L + +L+ + LA +LGWCVE
Sbjct: 76 ---NVSGGKMNRGLTVLHSLQLLVEGRQLSRSEIFLANVLGWCVE 117
>sp|Q92250|FPPS_NEUCR Farnesyl pyrophosphate synthase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=fpp PE=3 SV=2
Length = 347
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 86/127 (67%), Gaps = 4/127 (3%)
Query: 133 VSLKTSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V+ +T MGQ DL TA DL F+MD+Y IV YKTA+YSF LPVALAM+M +
Sbjct: 155 VTFQTEMGQLCDLLTAPEDKVDLDNFSMDKYTFIVIYKTAYYSFYLPVALAMYMLDIATP 214
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
E +QA +L+ +G +FQVQDDYLD FG P+ GKIGTDI+D KCSWL AL TP Q
Sbjct: 215 ENLKQAEDILIPLGEYFQVQDDYLDNFGLPEHIGKIGTDIQDNKCSWLVNKALSIVTPEQ 274
Query: 249 RKLMEVN 255
RK +E N
Sbjct: 275 RKTLEEN 281
>sp|Q7XYS9|FPPS1_ARTSI Farnesyl diphosphate synthase 1 OS=Artemisia spiciformis GN=FDS-1
PE=1 SV=1
Length = 346
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 90/127 (70%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V +T+ GQ +DL T DLSK+++ + IV+YKTA+YSF LPVA A+ M G +D+
Sbjct: 157 VEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALLMFG-EDL 215
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ H + + +L+EMG +FQVQDDYLDCFG P+V GKIGTDIED KCSWL V AL+ A Q
Sbjct: 216 DKHVEVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELANEEQ 275
Query: 249 RKLMEVN 255
+K + N
Sbjct: 276 KKTLHEN 282
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
+I ++L YNVP GK NRGL++V +Y++L + EL+ + + L+ LGWC+E
Sbjct: 39 WIQKMLDYNVPGGKLNRGLSVVDSYQLL-KGGELSDDEIFLSSALGWCIE 87
>sp|Q7XYT0|FPPS2_ARTSI Farnesyl diphosphate synthase 2 OS=Artemisia spiciformis GN=FDS-2
PE=1 SV=1
Length = 342
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 93/127 (73%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V +T+ GQ +DL T +LSK+++ ++ IVK+KTA+YSF LPVA A+ M G +++
Sbjct: 153 VEFQTASGQMIDLITTLFGQKELSKYSLSTHQRIVKFKTAYYSFYLPVACALLMFG-ENL 211
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ H Q + +L+EMG +FQVQDDYLDCFG+P+V GKIGTDIED KCSWL V AL+ A Q
Sbjct: 212 DDHVQVKDVLVEMGTYFQVQDDYLDCFGSPEVIGKIGTDIEDFKCSWLVVKALELADEQQ 271
Query: 249 RKLMEVN 255
+KL+ N
Sbjct: 272 KKLLNEN 278
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
++ ++L YNVP GK NRGL++V +YK+L Q ELT + + LA LGWC+E
Sbjct: 35 WVERMLDYNVPGGKLNRGLSVVDSYKLLKQ-EELTEDEVFLACALGWCIE 83
>sp|P49349|FPPS_KLULA Farnesyl pyrophosphate synthase OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=FPS1 PE=3 SV=1
Length = 349
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 92/127 (72%), Gaps = 4/127 (3%)
Query: 133 VSLKTSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V+ +T +GQ LDL TA DLSKF+++++ IV +KTA+YSF L VALAM AG+ D
Sbjct: 157 VTFQTELGQLLDLITAPEDKVDLSKFSLEKHSFIVIFKTAYYSFYLAVALAMFAAGITDS 216
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ +QA +L+ +G +FQ+QDD+LDCFG P+ GKIGTDI+D KCSW+ VAL+ AT Q
Sbjct: 217 KDLKQASDVLIPLGEYFQIQDDFLDCFGKPEDIGKIGTDIQDNKCSWVINVALKNATKEQ 276
Query: 249 RKLMEVN 255
R +++ N
Sbjct: 277 RDILDEN 283
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 25/108 (23%)
Query: 30 DESRDFMAIFPDLVRDLTDAGRHSDIPD-VTKWYAKVLQYNKAISNNVYLGTYFIVQVLQ 88
D F+ +FP LV++L D +P+ +WY K L YN
Sbjct: 3 DNRAQFLEVFPSLVQELRDILAGYGMPEEAIEWYEKSLNYN------------------- 43
Query: 89 YNVPSGKKNRGLALVVAYKML---AQPSELTPENLHLAQILGWCVEIV 133
P GK NRGL++V Y +L SEL+ E ILGWC+E++
Sbjct: 44 --TPGGKLNRGLSVVDTYALLKGYKSVSELSAEEYKKVAILGWCIELL 89
>sp|Q43315|FPPS2_ARATH Farnesyl pyrophosphate synthase 2 OS=Arabidopsis thaliana GN=FPS2
PE=2 SV=1
Length = 342
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 90/127 (70%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V +T+ GQ +DL T DLSK+++ + IV+YKTA+YSF LPVA A+ MAG +++
Sbjct: 153 VEFQTACGQMIDLITTFDGEKDLSKYSLQIHRRIVEYKTAYYSFYLPVACALLMAG-ENL 211
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
E H +T+L++MG +FQVQDDYLDCF P+ GKIGTDIED KCSWL V AL+R + Q
Sbjct: 212 ENHTDVKTVLVDMGIYFQVQDDYLDCFADPETLGKIGTDIEDFKCSWLVVKALERCSEEQ 271
Query: 249 RKLMEVN 255
K++ N
Sbjct: 272 TKILYEN 278
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
++ ++L YNV GK NRGL++V +YK+L Q +LT + L+ LGWC+E
Sbjct: 34 WLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIE 83
>sp|P49350|FPPS_ARTAN Farnesyl pyrophosphate synthase OS=Artemisia annua GN=FPS1 PE=2
SV=1
Length = 343
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 89/127 (70%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V +T+ GQ +DL T DLSK+++ + IV+YKTA+YSF LPVA A+ M G +D+
Sbjct: 154 VEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALLMFG-EDL 212
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ H + + +L+EMG +FQVQDDYLDCFG P+V GKIGTDIED KCSWL V AL+ Q
Sbjct: 213 DKHVEVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELPNEEQ 272
Query: 249 RKLMEVN 255
+K + N
Sbjct: 273 KKTLHEN 279
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
+I ++L YNVP GK NRGL++V +Y++L + EL+ + + L+ LGWC+E
Sbjct: 36 WIEKMLDYNVPGGKLNRGLSVVDSYQLL-KGGELSDDEIFLSSALGWCIE 84
>sp|P49352|FPPS2_LUPAL Farnesyl pyrophosphate synthase 2 OS=Lupinus albus GN=FPS2 PE=2
SV=1
Length = 342
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 89/127 (70%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V +T+ GQ +DL T DLSK+T+ + IV+YKTA+YSF LPVA A+ M G +++
Sbjct: 153 VEFQTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMVG-ENL 211
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ H + +L+EMG +FQVQDDYLDCFG P+ GKIGTDIED KCSWL V AL+ + Q
Sbjct: 212 DNHTDVKNILVEMGTYFQVQDDYLDCFGAPETIGKIGTDIEDFKCSWLVVKALELSNEEQ 271
Query: 249 RKLMEVN 255
+K++ N
Sbjct: 272 KKVLYEN 278
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
++ ++L YNVP GK NRGL+++ +YK+L EL E + LA LGWC+E
Sbjct: 34 WVERMLDYNVPGGKLNRGLSVIDSYKLLKDGQELNDEEIFLASALGWCIE 83
>sp|Q09152|FPPS1_ARATH Farnesyl pyrophosphate synthase 1, mitochondrial OS=Arabidopsis
thaliana GN=FPS1 PE=2 SV=2
Length = 384
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 90/127 (70%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V L+T+ GQ +DL T DL+K+++ + IV+YKTA+YSF LPVA A+ MAG +++
Sbjct: 195 VELQTACGQMIDLITTFEGEKDLAKYSLSIHRRIVQYKTAYYSFYLPVACALLMAG-ENL 253
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
E H + +L++MG +FQVQDDYLDCF P+ GKIGTDIED KCSWL V AL+R + Q
Sbjct: 254 ENHIDVKNVLVDMGIYFQVQDDYLDCFADPETLGKIGTDIEDFKCSWLVVKALERCSEEQ 313
Query: 249 RKLMEVN 255
K++ N
Sbjct: 314 TKILYEN 320
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
++ ++L YNV GK NRGL++V ++K+L Q ++LT + + L+ LGWC+E
Sbjct: 76 WVDRMLDYNVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIE 125
>sp|P49351|FPPS1_LUPAL Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2
SV=1
Length = 342
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 89/127 (70%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V +T+ GQ +DL T DLSK+T+ + IV+YKTA+YSF LPVA A+ M G +++
Sbjct: 153 VEFQTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMVG-ENL 211
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ H + +L++MG +FQVQDDYLDCFG P+ GKIGTDIED KCSWL V AL+ + Q
Sbjct: 212 DNHIDVKNILVDMGTYFQVQDDYLDCFGAPETIGKIGTDIEDFKCSWLVVKALELSNDEQ 271
Query: 249 RKLMEVN 255
+K++ N
Sbjct: 272 KKVLYDN 278
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 85 QVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
++L YNVP GK NRGL+++ +Y++L EL + + LA LGWC+E
Sbjct: 37 RMLDYNVPGGKLNRGLSVIDSYRLLKDGHELNDDEIFLASALGWCIE 83
>sp|Q92235|FPPS_GIBFU Farnesyl pyrophosphate synthase OS=Gibberella fujikuroi GN=FPPS
PE=3 SV=1
Length = 347
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 85/127 (66%), Gaps = 4/127 (3%)
Query: 133 VSLKTSMGQSLDLSTAND----LSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
+ +T +GQ DL TA + L F++++Y IV YKTA+YSF LPVALA+H +
Sbjct: 155 TTFQTELGQLCDLLTAPEDNVNLDNFSLEKYSFIVIYKTAYYSFYLPVALALHQLNLATP 214
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+QA +L+ +G +FQ+QDDYLD FG P+ GKIGTDI+D KCSWL AL ATP Q
Sbjct: 215 SNLKQAEDILIPLGEYFQIQDDYLDNFGKPEHIGKIGTDIKDNKCSWLVNQALAVATPEQ 274
Query: 249 RKLMEVN 255
RK++E N
Sbjct: 275 RKILEEN 281
>sp|P49353|FPPS_MAIZE Farnesyl pyrophosphate synthase OS=Zea mays GN=FPS PE=2 SV=1
Length = 350
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 91/127 (71%), Gaps = 5/127 (3%)
Query: 133 VSLKTSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V KT+ GQ LDL T + DL+K+ + + IV+YKTA+YSF LPVA A+ ++G +++
Sbjct: 161 VEFKTASGQLLDLITTHEGEKDLTKYNITVHGRIVQYKTAYYSFYLPVACALLLSG-ENL 219
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ + +L+EMG +FQVQDDYLDC+G P+ GKIGTDIED KCSWL V AL+RA +Q
Sbjct: 220 DNYGDVENILVEMGTYFQVQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADESQ 279
Query: 249 RKLMEVN 255
++++ N
Sbjct: 280 KRILFEN 286
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
+I +++ YNV GK NRGL++V +YK+L L E LA LGWC+E
Sbjct: 42 WIDRMVDYNVLGGKCNRGLSVVDSYKLLKGADALGEEETFLACTLGWCIE 91
>sp|O64905|FPPS_HELAN Farnesyl pyrophosphate synthase OS=Helianthus annuus GN=FPS1 PE=2
SV=1
Length = 341
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 89/127 (70%), Gaps = 6/127 (4%)
Query: 133 VSLKTSMGQSLDLSTA----NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V +T+ GQ +DL T DLSK+++ + IV+YKTA+YSF LPVA A+ M G +D+
Sbjct: 153 VEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALLMFG-EDL 211
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ H + + +L+EMG +FQVQDDYLDCFG P+V GKIGTDIED SWL V AL+ A Q
Sbjct: 212 DNHVEVKNVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDF-SSWLVVKALELANEEQ 270
Query: 249 RKLMEVN 255
+K++ N
Sbjct: 271 KKVLHEN 277
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
+I ++L YNVP GK NRGL++V +Y++L + +ELT + + LA LGWC+E
Sbjct: 35 WIDKMLDYNVPGGKLNRGLSVVDSYQLL-KGAELTDDEIFLASALGWCIE 83
>sp|Q54XP1|Y8823_DICDI Probable farnesyl diphosphate synthase DDB_G0278823
OS=Dictyostelium discoideum GN=DDB_G0278823 PE=3 SV=1
Length = 356
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 79/123 (64%), Gaps = 3/123 (2%)
Query: 134 SLKTSMGQSLDLSTA---NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEV 190
+T +GQ LDL+T D S + + I +YKTA+YSF PVALAM M+ + +
Sbjct: 168 GFQTQLGQLLDLTTQPIRGDFSSINLKNHTRITEYKTAYYSFFFPVALAMLMSKINHEQA 227
Query: 191 HRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRK 250
A+ +LL MG +FQVQDD+LDC+G+P+V GKIG DIE+ KCSW+ A+ TP Q
Sbjct: 228 FTTAKDILLPMGVYFQVQDDFLDCYGSPEVFGKIGRDIEENKCSWMICQAILNGTPDQIN 287
Query: 251 LME 253
L++
Sbjct: 288 LLK 290
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 20/104 (19%)
Query: 29 KDESRDFMAIFPDLVRDLTDAGRHSDIPDVTKWYAKVLQYNKAISNNVYLGTYFIVQVLQ 88
K+ +F +FP L+ ++ D P + ++I V++
Sbjct: 9 KEVLEEFANLFPILLNEIKKELEKIDFPKES--------------------IHWIETVIK 48
Query: 89 YNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEI 132
N GK NRG++++ + + L + LT + AQ LGWCVEI
Sbjct: 49 ANSTGGKMNRGISVLESLESLNEGRALTRHEIFQAQTLGWCVEI 92
>sp|P0C565|CPPAS_TANCI Chrysanthemyl diphosphate synthase, chloroplastic OS=Tanacetum
cinerariifolium PE=1 SV=1
Length = 395
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 9/154 (5%)
Query: 106 YKMLAQPSELTPENLHLAQILGWCVEIVSLKTSMGQSLD----LSTANDLSKFTMDRYEA 161
+++L + + P +HL + +T GQ +D L+ DLSK+TM
Sbjct: 183 HRILKKYFQGKPYYVHLLDLFN----ETEFQTISGQMIDTICRLAGQKDLSKYTMTLNRR 238
Query: 162 IVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVT 221
IV+YK ++YS LP+A A+ M G +++E H Q + +L+E+G ++Q+Q+DYLD FG PDV
Sbjct: 239 IVQYKGSYYSCYLPIACALLMFG-ENLEDHVQVKDILVELGMYYQIQNDYLDTFGDPDVF 297
Query: 222 GKIGTDIEDGKCSWLAVVALQRATPAQRKLMEVN 255
GK GTDIE+ KCSWL AL+ A Q+K++ N
Sbjct: 298 GKTGTDIEECKCSWLIAKALELANEEQKKILSEN 331
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 82 FIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
++ +++ YNVP GK RG ++V +Y++L + ELT + LA LGWC E
Sbjct: 88 WVERMIDYNVPGGKMVRGYSVVDSYQLL-KGEELTEDEAFLACALGWCTE 136
>sp|Q7XYS8|CHRDS_ARTSI Monoterpene synthase FDS-5, chloroplastic OS=Artemisia spiciformis
GN=FDS-5 PE=1 SV=1
Length = 394
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 83/125 (66%), Gaps = 5/125 (4%)
Query: 135 LKTSMGQSLD----LSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEV 190
+T GQ +D L+ +LSK++M IV+YK A+YS LP+A A+ M G ++++
Sbjct: 207 FQTISGQMIDTISRLAGQKELSKYSMSLNRRIVQYKGAYYSCYLPIACALLMFG-ENLDD 265
Query: 191 HRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRK 250
+ Q + +L+E+G ++Q+Q+DYLD FG P+V GK GTDIE+ KCSWL AL+ A Q+K
Sbjct: 266 YVQVKDILVELGMYYQIQNDYLDTFGDPNVFGKTGTDIEECKCSWLIAKALELANEEQKK 325
Query: 251 LMEVN 255
++ N
Sbjct: 326 ILSEN 330
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 12 KILSHDPPLAATNTVLSKDESRDFMAIFPDLVRDLTDAGRHSDIPDVTKWYAKVLQYNKA 71
K S +P + T LS + + FM ++ L +L D +W
Sbjct: 38 KPTSSEPSYSPLTTTLSSNLNSQFMQVYETLKSELIHDPLFEFDDDSRQW---------- 87
Query: 72 ISNNVYLGTYFIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVE 131
+ +++ Y VP GK RG ++V +Y++L + ELT E LA LGWC E
Sbjct: 88 -----------VERMIDYTVPGGKMVRGYSVVDSYQLL-KGEELTEEEAFLACALGWCTE 135
>sp|O59703|GGPPS_SCHPO Geranylgeranyl pyrophosphate synthase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spo9 PE=1 SV=1
Length = 351
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 133 VSLKTSMGQSLDLSTAND----LSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
V+ T +GQ DL ++ D L F + +Y+ I+ YKT+FYSF LP+ A+ ++ +
Sbjct: 159 VTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQ 218
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQ 248
+ + L +G++FQVQDDYLDCFG V GK+G DI+D KC+WL A + A+ Q
Sbjct: 219 KAYDTTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASADQ 278
Query: 249 RKLMEVN 255
L+ +
Sbjct: 279 LNLLRAH 285
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 87 LQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV 133
++ N GK NRGLA++ + L EL A +LGW +EI+
Sbjct: 47 IKRNTLGGKNNRGLAVLQSLTSLIN-RELEEAEFRDAALLGWLIEIL 92
>sp|Q55EU7|Y8742_DICDI Probable farnesyl diphosphate synthase DDB_G0268742
OS=Dictyostelium discoideum GN=DDB_G0268742 PE=3 SV=1
Length = 393
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 23/127 (18%)
Query: 137 TSMGQSLDLSTAN----DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHR 192
T+ GQ LD S+ + D + FT + Y I K++ + F L + +A+ + + D +
Sbjct: 186 TATGQLLDSSSFHLKRGDFTNFTFENYSQICINKSSHHVFYLQIKIAILLTDIMDNNEKQ 245
Query: 193 Q-------------------ARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKC 233
+ + + +G + Q QDDY DCFG P V GK GTDI++ KC
Sbjct: 246 KDDTTCKEEKDKEKEQEEELIKNICFNLGIYGQAQDDYFDCFGDPKVIGKTGTDIQENKC 305
Query: 234 SWLAVVA 240
SWL A
Sbjct: 306 SWLICKA 312
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 129 CVEIVSLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
+EI+S GQ++D+S N L T + Y ++K KTA F AL + D
Sbjct: 145 SIEIIS----EGQAMDMSFENRLD-VTEEEYIQMIKGKTAML-FSCSAALGGIINKAND- 197
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRATPA 247
+V ++ L +G FQ+ DD L G GK I +DI +GK + L + L AT
Sbjct: 198 DVVKKLTEYGLNLGISFQIVDDILGIIGDEKELGKPIYSDIREGKKTILVIKTLSEATED 257
Query: 248 QRKLM 252
++K++
Sbjct: 258 EKKIL 262
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 129 CVEIVSLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDV 188
CVE+ GQ++D+ N TM+ Y +++ KT + V + MA +
Sbjct: 146 CVEVCE-----GQAMDMEFENYYP--TMEEYLDMIRKKTGAL-LEASVGIGAVMADCNEE 197
Query: 189 EVHRQA-RTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRATP 246
E R+A + +G FQ+QDD LD G GK +G+DI +GK + + + AL+
Sbjct: 198 E--REALKEYAKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALKTLDE 255
Query: 247 AQRK-LMEV 254
++K L+E+
Sbjct: 256 DKKKRLLEI 264
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 122 LAQILGWCVEIVSLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMH 181
LA ++ CV+I GQ+LD+ L T D Y ++ YK
Sbjct: 135 LAVVVDSCVKICE-----GQALDMGFEERLD-VTEDEYMEMI-YKKTAALIAAATKAGAI 187
Query: 182 MAGMQDVEVHRQARTLLLEMGHF----FQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWL 236
M G + EV L + G F FQ+ DDYLD + GK +G+DI +GK + +
Sbjct: 188 MGGASEREVE-----ALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLM 242
Query: 237 AVVALQRATPAQRK 250
V AL+ A+ R+
Sbjct: 243 VVKALEEASEEDRE 256
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 201 MGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRATPAQRK 250
+G FQ+ DDYLD + GK +G+DI +GK + + V AL+RA+ R+
Sbjct: 206 IGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALERASEKDRE 256
>sp|P54383|ISPA_BACSU Farnesyl diphosphate synthase OS=Bacillus subtilis (strain 168)
GN=ispA PE=3 SV=2
Length = 296
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 140 GQSLDLSTANDLSKFTMDRYEAIVKYKTA-FYSFQLPVALAMHMAGMQDVEVHRQARTLL 198
GQ D+ N + T++ E+I + KTA F + + A +D+E RT
Sbjct: 158 GQVADMEAEN--RQVTLEELESIHERKTAKLLGFCVIAGAILADAPEEDIET---LRTFS 212
Query: 199 LEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRA 244
+G FQ++DD LD G+ + GK +G+D + K ++ ++++L+ A
Sbjct: 213 SHIGIGFQIRDDILDLEGSEEKIGKRVGSDTTNDKSTYPSLLSLEGA 259
>sp|P22939|ISPA_ECOLI Farnesyl diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispA PE=1 SV=1
Length = 299
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 140 GQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLL 199
GQ+LDL +D E I ++KT + A+ + + + R+A +L
Sbjct: 157 GQALDLDAEG--KHVPLDALERIHRHKTGAL-----IRAAVRLGALSAGDKGRRALPVLD 209
Query: 200 E----MGHFFQVQDDYLDCFGTPDVTGKI-GTDIEDGKCSWLAVVALQRATPAQRKLME 253
+ +G FQVQDD LD G GK G D + GK ++ A++ L++A R L++
Sbjct: 210 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 112 PSELTPENLHLAQILGWCVEIVSLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYS 171
P+E + E L ++ C EI GQ+LD+ N S T + Y +V++KTA
Sbjct: 147 PAERSVEALD--ELATTCTEICE-----GQALDVDFEN-RSDVTTEEYLEMVEFKTAVL- 197
Query: 172 FQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIED 230
+ ++ + G D E L++G FQ+QDD LD D GK G+D+ +
Sbjct: 198 YAAAASIPAILLGSDD-ETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLVE 256
Query: 231 GK 232
K
Sbjct: 257 NK 258
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 140 GQSLDLSTAN-DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLL 198
GQ +DLS+ + ++R E I +KTA + + M G + E+ + R
Sbjct: 219 GQVVDLSSERLNPHDVGLERLEFIHLHKTAAL-LEAAAVIGAIMGGGTEEEIEK-LRKYA 276
Query: 199 LEMGHFFQVQDDYLDCFGTPDVTGKI-GTDIEDGKCSWLAVVALQRATPAQRKL 251
+G FQV DD LD + + GK G D+ GK ++ ++ L+R+ KL
Sbjct: 277 RCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSREVAEKL 330
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 155 TMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214
T D Y I+ KT+ F+L A +AG E R G+ FQ+ DD LD
Sbjct: 163 TEDIYLQIIHGKTSRL-FELATEGAAILAGKP--EYREPLRRFAGHFGNAFQIIDDILDY 219
Query: 215 FGTPDVTGK-IGTDIEDGKCSWLAVVALQRATPAQRKLM 252
D GK IG D+ +GK + + A+Q QR L+
Sbjct: 220 TSDADTLGKNIGDDLMEGKPTLPLIAAMQNTQGEQRDLI 258
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRA 244
E+ + + + G FQ++DD L G P VTGK + D+ GK + L + A+++A
Sbjct: 187 EIEKMMGEVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYAVKKA 243
>sp|Q9P885|GGPPS_MUCCL Geranylgeranyl pyrophosphate synthase OS=Mucor circinelloides f.
lusitanicus GN=carG PE=1 SV=1
Length = 303
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 120 LHLAQILGWCVEIVSLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALA 179
L++ ++ C E + + GQ ++L + L+ T + Y +V KT+ +L V L
Sbjct: 111 LNIPSMMQVCTEEL-INLHRGQGIELYWRDSLTCPTEEEYIDMVNNKTSGL-LRLAVRL- 167
Query: 180 MHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAV 238
M A D++ L+ +G FQV+DDY++ T K D+ +GK S+ +
Sbjct: 168 MQAASESDIDY----TPLVNIIGIHFQVRDDYMNLQSTSYTNNKGFCEDLTEGKFSFPII 223
Query: 239 VALQRATPAQRKLMEV 254
A+ R P+ R+L+ +
Sbjct: 224 HAI-RKDPSNRQLLNI 238
>sp|O66126|ISPA_MICLU Farnesyl diphosphate synthase OS=Micrococcus luteus GN=fps PE=3
SV=1
Length = 291
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 140 GQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLL 199
GQ LD+ + T++ E I +KT + + A + D ++ Q +
Sbjct: 153 GQMLDMQGEH--KTLTLNELERIHIHKTGEL-IRAAIVSAGIIMNFNDAQI-EQLNIIGK 208
Query: 200 EMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQ 242
+G FQ++DD LD G+ + GK +G+D+ + K ++++++ L+
Sbjct: 209 NVGLMFQIKDDILDVEGSFENIGKTVGSDLNNDKSTYVSLLGLE 252
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 140 GQSLDLSTANDLSKFTMDRYEAIVKYKTAF---YSFQLPVALAMHMAGMQDVEVHRQART 196
GQ+ D+ + T+ E I ++KT YS A + G D R+
Sbjct: 159 GQAADME--GEGKTLTLSELEYIHRHKTGKMLQYSVH-----AGALIGGADARQTRELDE 211
Query: 197 LLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRA 244
+G FQ++DD LD G + GK +G+D + K ++ A+++L A
Sbjct: 212 FAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYPALLSLAGA 260
>sp|B2DBE8|GGS1_PHOAM Geranylgeranyl pyrophosphate synthase A OS=Phomopsis amygdali
GN=GGS-A PE=1 SV=1
Length = 389
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 139 MGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLL 198
+GQSLDL + +S +++ Y +V KT F++ L + + ++ L+
Sbjct: 198 IGQSLDLLWTHQISTPSVEEYLQMVDGKTGGL-FRMASKLMIAQSESSNMN-PTDLDALM 255
Query: 199 LEMGHFFQVQDDYLDCFGTPDVTGKIG--TDIEDGKCSWLAVVALQRATPAQRKLME 253
+G +FQ++DDY++ + + T G D+++GK S + + AL+ R L++
Sbjct: 256 TLLGRYFQIRDDYMN-LTSQEYTKSKGFCEDLDEGKYSLIMIHALENCDHKSRVLLD 311
>sp|P45204|ISPA_HAEIN Farnesyl diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispA PE=3 SV=1
Length = 295
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 105 AYKMLAQ-PSELTPENLHLAQILGWCVEIVSLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163
A+++L + P+ T + L L QIL + + +GQSLDL + + + ++ E I
Sbjct: 122 AFEILTKTPNISTEQKLALIQILAQGAGVQGM--CLGQSLDLISEH--KQISLSELELIH 177
Query: 164 KYKTA---FYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDV 220
+ KT + +L + H D + + +G FQVQDD LD G
Sbjct: 178 RNKTGALLIAALKLGFICSPHFT---DKRLEQSLTQYAEAIGLAFQVQDDILDIEGDSAE 234
Query: 221 TGK-IGTDIEDGKCSWLAVVALQRA 244
GK +G D++ K ++ ++ L A
Sbjct: 235 IGKQVGADLDLDKSTYPKLLGLSGA 259
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 7/151 (4%)
Query: 105 AYKMLAQPSELTPENLHLAQILGWCVEIVSLKTSM-GQSLDLSTAN-DLSKFTMDRYEAI 162
A++ LA + ++P + + +G + + K + GQ +DL++ D + ++ E I
Sbjct: 171 AFEHLATSTAVSPARV--VRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFI 228
Query: 163 VKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTG 222
+KTA + L + G D EV + R +G FQV DD LD + + G
Sbjct: 229 HVHKTAVL-LEAATVLGAIVGGGSDEEVEK-LRRFARCIGLLFQVVDDILDVTKSSEELG 286
Query: 223 KI-GTDIEDGKCSWLAVVALQRATPAQRKLM 252
K G D+ K ++ ++ L+++ KL+
Sbjct: 287 KTAGKDLIADKLTYPKLMGLEKSKDFADKLL 317
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 140 GQSLDLSTAN-DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLL 198
GQ +D+S+ DL+ ++ + I +KTA + L + G D E+ R R
Sbjct: 224 GQVVDISSEGLDLNNVGLEHLKFIHLHKTAAL-LEASAVLGGIIGGGSDEEIER-LRKFA 281
Query: 199 LEMGHFFQVQDDYLDCFGTPDVTGKI-GTDIEDGKCSWLAVVALQRATPAQRKL 251
+G FQV DD LD + GK G D+ K ++ ++ L+++ KL
Sbjct: 282 RCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKL 335
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 140 GQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLL 199
GQ +D+++ S+ +++ E I +KTA + V L + G D EV + R
Sbjct: 230 GQVVDINSEGS-SEVDLEKLEFIHIHKTAKL-LEGAVVLGAILGGGTDEEVEK-LRKYAR 286
Query: 200 EMGHFFQVQDDYLDCFGTPDVTGKI-GTDIEDGKCSWLAVVALQRATPAQRKL 251
++G FQV DD LD + GK G D+ K ++ ++ ++++ KL
Sbjct: 287 DIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKL 339
>sp|O95749|GGPPS_HUMAN Geranylgeranyl pyrophosphate synthase OS=Homo sapiens GN=GGPS1 PE=1
SV=1
Length = 300
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQA 194
L+ GQ LD+ ++ + T + Y+A+V KT F L V L + ++
Sbjct: 120 LELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGL-FGLAVGLMQLFSDYKE-----DL 173
Query: 195 RTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVAL 241
+ LL +G FFQ++DDY + K D+ +GK S+ + A+
Sbjct: 174 KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 221
>sp|P56966|GGPPS_BOVIN Geranylgeranyl pyrophosphate synthase OS=Bos taurus GN=GGPS1 PE=1
SV=2
Length = 300
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQA 194
L+ GQ LD+ ++ + T + Y+A+V KT F L V L + ++
Sbjct: 120 LELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGL-FGLAVGLMQLFSDYKE-----DL 173
Query: 195 RTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVAL 241
+ LL +G FFQ++DDY + K D+ +GK S+ + A+
Sbjct: 174 KPLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 221
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 102 LVVAYKMLAQPSELTPENLHLAQILGWCVEIVSLKTSMGQSLDLSTANDLSKFTMDRYEA 161
L A++ +A ++ P +L + I + + GQ +DLS+ S T++
Sbjct: 123 LAYAFEFIATQTKNVPADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGK-SDTTLETLNF 181
Query: 162 IVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVT 221
I +KT + V +AG ++ +++R R +G FQ+ DD LD T +
Sbjct: 182 IHIHKTGAL-LEAAVLSGALLAGAKEKDMNRFLR-YAQNIGLAFQIIDDVLDIISTEEKL 239
Query: 222 GK-IGTDIEDGKCSWLAVVALQRATPAQRKLME 253
GK IG D++ K ++ + ++ + L+E
Sbjct: 240 GKSIGKDLKTQKATYPSFWGVEESIKQAELLVE 272
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 10/152 (6%)
Query: 102 LVVAYKMLAQPSELTPENLHLAQILGWCVEIVSLKTSMGQSLDLSTAN-DLSKFTMDRYE 160
+ V L P + + LA+ +G + GQ +DL++ + K ++ E
Sbjct: 186 MTVVSSGLVAPERMIRAVVELARAIGTTGLVA------GQMIDLASERLNPDKVGLEHLE 239
Query: 161 AIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDV 220
I +KTA L + M G + E+ + R +G FQV DD LD + +
Sbjct: 240 FIHLHKTAALLEAA-AVLGVIMGGGTEEEIEK-LRKYARCIGLLFQVVDDILDVTKSTEE 297
Query: 221 TGKI-GTDIEDGKCSWLAVVALQRATPAQRKL 251
GK G D+ GK ++ ++ L+R+ KL
Sbjct: 298 LGKTAGKDVMAGKLTYPRLIGLERSKEVAEKL 329
>sp|Q8K9A0|ISPA_BUCAP Farnesyl diphosphate synthase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ispA PE=3 SV=1
Length = 294
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 29/168 (17%)
Query: 52 HSDIPDVTKWYAKVLQYNKAISNNVYLGTYFIV------QVLQYNVPSGKKNRGLALVVA 105
H D+P + Y + IS ++ G F + Q L +N+ S G+ +
Sbjct: 83 HDDLPCIDNDYFR----RGKISCHIKYGENFALLAGDALQGLAFNILSNSNMPGVHDSIR 138
Query: 106 YKMLAQPSELTPENLHLAQILGWCVEIVSLKTSMGQSLDLSTANDLSKFTMDRYEAIVKY 165
KM+A+ S + G C+ GQ LDL + K + E I Y
Sbjct: 139 LKMIAEFSNAIGYS-------GMCI---------GQMLDLEK--ERKKINISELEKINLY 180
Query: 166 KTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213
KTAF + + LA + EV + +G FQ+QDD LD
Sbjct: 181 KTAFL-IRCSIRLAYFASNNFSKEVLFILDKFSVSIGLAFQIQDDILD 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,152,499
Number of Sequences: 539616
Number of extensions: 3462481
Number of successful extensions: 7532
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 7423
Number of HSP's gapped (non-prelim): 103
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)