Query psy9101
Match_columns 255
No_of_seqs 250 out of 1872
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 18:56:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0711|consensus 100.0 8.4E-44 1.8E-48 320.1 16.8 208 27-255 4-281 (347)
2 COG0142 IspA Geranylgeranyl py 100.0 4.3E-38 9.4E-43 290.3 18.0 175 68-249 14-255 (322)
3 PRK10888 octaprenyl diphosphat 100.0 2.3E-37 4.9E-42 285.6 18.9 177 67-253 16-256 (323)
4 PLN02890 geranyl diphosphate s 100.0 2.6E-36 5.7E-41 286.2 18.3 188 61-252 87-351 (422)
5 TIGR02749 prenyl_cyano solanes 100.0 4.6E-36 1E-40 276.8 19.1 179 67-253 16-258 (322)
6 TIGR02748 GerC3_HepT heptapren 100.0 4.3E-36 9.4E-41 276.6 17.9 168 67-244 15-246 (319)
7 PRK10581 geranyltranstransfera 100.0 3.7E-36 8E-41 274.9 17.2 164 80-253 29-268 (299)
8 CHL00151 preA prenyl transfera 100.0 1.5E-35 3.3E-40 273.4 19.2 177 68-252 18-258 (323)
9 PLN02857 octaprenyl-diphosphat 100.0 2.7E-35 5.9E-40 279.1 18.6 190 59-253 98-352 (416)
10 PF00348 polyprenyl_synt: Poly 100.0 4.8E-35 1E-39 262.1 10.6 156 88-254 7-232 (260)
11 cd00685 Trans_IPPS_HT Trans-Is 100.0 3.4E-32 7.3E-37 243.5 14.9 152 81-241 4-222 (259)
12 KOG0776|consensus 99.9 1.4E-26 3.1E-31 214.8 15.3 166 79-253 91-325 (384)
13 cd00867 Trans_IPPS Trans-Isopr 99.9 1.3E-23 2.8E-28 184.0 14.2 108 134-244 94-201 (236)
14 KOG0777|consensus 99.7 5.7E-17 1.2E-21 141.5 10.5 142 88-242 28-233 (322)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.1 4E-10 8.6E-15 95.7 10.1 102 134-246 88-189 (243)
16 cd00683 Trans_IPPS_HH Trans-Is 92.7 2.3 4.9E-05 38.0 11.9 83 135-238 96-178 (265)
17 PLN02632 phytoene synthase 90.2 0.48 1E-05 44.3 5.0 85 135-237 143-229 (334)
18 TIGR03465 HpnD squalene syntha 89.5 0.92 2E-05 40.7 6.1 81 135-237 88-168 (266)
19 TIGR03464 HpnC squalene syntha 86.7 1.7 3.7E-05 39.0 6.1 82 135-238 89-170 (266)
20 PF00494 SQS_PSY: Squalene/phy 86.1 1.3 2.8E-05 39.3 4.9 87 135-241 94-181 (267)
21 TIGR01559 squal_synth farnesyl 82.4 3 6.5E-05 39.1 5.8 91 134-238 110-200 (336)
22 PF06783 UPF0239: Uncharacteri 64.6 8.5 0.00018 29.0 3.2 23 187-209 14-36 (85)
23 PRK10888 octaprenyl diphosphat 54.1 25 0.00055 32.6 5.2 50 178-239 54-103 (323)
24 cd00685 Trans_IPPS_HT Trans-Is 49.5 42 0.0009 29.8 5.7 34 179-213 29-63 (259)
25 PF00348 polyprenyl_synt: Poly 44.9 87 0.0019 27.7 7.0 37 176-213 21-57 (260)
26 COG1562 ERG9 Phytoene/squalene 44.4 44 0.00095 30.7 5.1 81 135-236 106-186 (288)
27 PRK13105 ubiA prenyltransferas 44.1 52 0.0011 30.1 5.5 34 201-244 172-205 (282)
28 TIGR02748 GerC3_HepT heptapren 38.9 58 0.0013 30.1 5.0 34 179-213 54-87 (319)
29 PRK12884 ubiA prenyltransferas 37.8 71 0.0015 28.5 5.3 62 172-244 139-200 (279)
30 PF01040 UbiA: UbiA prenyltran 36.3 86 0.0019 27.0 5.5 61 174-244 131-191 (257)
31 PRK06080 1,4-dihydroxy-2-napht 35.9 3.1E+02 0.0067 24.6 9.2 82 155-238 2-89 (293)
32 PRK12872 ubiA prenyltransferas 35.1 76 0.0016 28.3 5.1 35 200-244 172-206 (285)
33 cd00867 Trans_IPPS Trans-Isopr 34.6 98 0.0021 26.5 5.5 42 172-214 2-43 (236)
34 PRK10581 geranyltranstransfera 34.5 70 0.0015 29.3 4.8 48 180-239 56-105 (299)
35 cd00687 Terpene_cyclase_nonpla 32.9 2E+02 0.0042 25.7 7.4 93 136-242 140-238 (303)
36 PLN00012 chlorophyll synthetas 29.0 70 0.0015 30.5 3.9 35 200-244 263-297 (375)
37 PF10244 MRP-L51: Mitochondria 28.8 27 0.00058 26.8 0.8 24 208-236 19-43 (94)
38 TIGR02749 prenyl_cyano solanes 26.7 99 0.0021 28.6 4.4 39 191-240 69-107 (322)
39 KOG0018|consensus 25.0 56 0.0012 35.3 2.6 26 77-103 1026-1052(1141)
40 PRK12882 ubiA prenyltransferas 23.7 2.4E+02 0.0053 25.1 6.3 33 202-244 170-202 (276)
41 COG0382 UbiA 4-hydroxybenzoate 22.8 2.3E+02 0.005 25.5 6.0 62 172-243 150-211 (289)
42 PF04284 DUF441: Protein of un 22.6 2.4E+02 0.0051 23.3 5.4 71 165-241 13-84 (140)
43 TIGR02056 ChlG chlorophyll syn 21.9 1.7E+02 0.0037 26.8 5.0 34 201-244 195-228 (306)
44 PF09053 CagZ: CagZ; InterPro 21.3 70 0.0015 26.3 2.0 14 198-211 142-157 (199)
45 CHL00151 preA prenyl transfera 21.1 1.7E+02 0.0037 27.0 4.8 37 193-240 72-108 (323)
No 1
>KOG0711|consensus
Probab=100.00 E-value=8.4e-44 Score=320.08 Aligned_cols=208 Identities=52% Similarity=0.909 Sum_probs=193.4
Q ss_pred chHHHHHHHHHHhhHHHHHHHhccCCCCCc-hHHHHHHHHHhHHHHHHhhhhcchhhHHHHhhcccCCCCccchHHHHHH
Q psy9101 27 LSKDESRDFMAIFPDLVRDLTDAGRHSDIP-DVTKWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPSGKKNRGLALVVA 105 (255)
Q Consensus 27 ~~~~~~~~f~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~i~~a~~y~~~gGKr~Rpll~lla 105 (255)
..++++++|+++||.+++++.+.+.....+ ++.+|+.++| .|++.|||.+|++.++.+
T Consensus 4 ~~~~~k~~f~~~f~~~vr~i~~~~~~~~~~~da~~~~~~~L---------------------~yN~~GGK~nRgl~vv~s 62 (347)
T KOG0711|consen 4 VYAQEKQDFLQVFPVLVRVLTEDLMAHGESGDATEWLKEVL---------------------DYNVIGGKLNRGLSVVDS 62 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHH---------------------hccCcccccccchhHHHH
Confidence 457899999999999999999998766555 9999999999 999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHH----------------------------------------------------
Q psy9101 106 YKMLAQPSELTPENLHLAQILGWCVEIV---------------------------------------------------- 133 (255)
Q Consensus 106 ~~~l~~~~~~~~~~~~~a~~lA~avEll---------------------------------------------------- 133 (255)
++.|.++..++++++.++..+|||||++
T Consensus 63 ~~~L~~~~~l~~~~~~~a~~lGw~vElLQaffLiaDDIMDnS~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~f 142 (347)
T KOG0711|consen 63 FKALVEPRKLDEEELQLALILGWCVELLQAFFLVADDIMDNSKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHF 142 (347)
T ss_pred HHHhcCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhc
Confidence 9999887788999999999999999999
Q ss_pred ----------------HHHhhcccchhcccCC-CCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy9101 134 ----------------SLKTSMGQSLDLSTAN-DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQART 196 (255)
Q Consensus 134 ----------------~~~~~~GQ~lDl~~~~-~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~ 196 (255)
.+.|+.||+++....+ +++.+|.+.|..|+.+|||+|||++|+++|++++|..+.+.....+.
T Consensus 143 r~~~~y~~l~elf~ev~f~T~lGdllt~~~~~~~ls~fsl~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~ 222 (347)
T KOG0711|consen 143 RNIYCYVDLVELFHEVTFQTELGDLLTTPEGNKDLSKFSLEKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKK 222 (347)
T ss_pred cCCccHHHHHHHHHHHHHHHhhhccccCcccchhHhhhhHHHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHH
Confidence 5778999888766544 56679999999999999999999999999999999767888999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhCCHHHHHHHHhC
Q psy9101 197 LLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRKLMEVN 255 (255)
Q Consensus 197 ~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a~~~~r~~l~~n 255 (255)
+...+|.+||+|||||||+|||+++||+|+||+++||||.+++|+++++++|++.+++|
T Consensus 223 v~~~lg~~FQvQDDYLd~fgDp~vtgkiGtDIqDnKCsWlv~~al~~~~~eq~~~l~~~ 281 (347)
T KOG0711|consen 223 VLLLLGEYFQVQDDYLDCFGDPEVTGKIGTDIQDNKCSWLVVKALQRASAEQYKILFEN 281 (347)
T ss_pred HHHHHHHHHhcchHHHHhcCChhhcCCCCCccccCceeeehHHHHhhcCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999876
No 2
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.3e-38 Score=290.26 Aligned_cols=175 Identities=27% Similarity=0.385 Sum_probs=154.7
Q ss_pred HHHHHHhhhh-cchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 68 YNKAISNNVY-LGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 68 ~~~~l~~~~~-~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
++..|...+. +.++.+.+++.|.+ .||||+||+++++++++++.. . .. ....+..+|++||++
T Consensus 14 i~~~l~~~l~~~~~~~l~~a~~~~~~aGGKrlRP~l~l~~~~~~~~~-~-~~-~~~~~~~~aaavEliH~~SLiHDDvmD 90 (322)
T COG0142 14 IEELLSELLSGSDPELLLEAMRYLLLAGGKRLRPLLVLLAAEALGID-L-ET-GGNDALDLAAAIELIHTASLIHDDLMD 90 (322)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHhcCCccHhHHHHHHHHHHcCCC-c-cc-chhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445555555 78888999999999 899999999999999999832 1 11 134566789999999
Q ss_pred ----------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHH
Q psy9101 134 ----------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEA 161 (255)
Q Consensus 134 ----------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~ 161 (255)
+..||.||.+|+.+.++. +|++.|.+
T Consensus 91 ~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~ 168 (322)
T COG0142 91 DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLR 168 (322)
T ss_pred CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHH
Confidence 567899999999998753 89999999
Q ss_pred HHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHH
Q psy9101 162 IVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 162 i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~a 240 (255)
|+++|||+| |.+++.+|++++++ +++..+.+.+||.++|+||||+||++|+++|++++|| +|+|+++||+|||++++
T Consensus 169 ~i~~KTa~L-~~~a~~~ga~la~~-~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~ 246 (322)
T COG0142 169 VIELKTAAL-FAAAAVLGAILAGA-DEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLA 246 (322)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHH
Confidence 999999999 99999999999999 7889999999999999999999999999999999999 99999999999999999
Q ss_pred HhhCCHHHH
Q psy9101 241 LQRATPAQR 249 (255)
Q Consensus 241 l~~a~~~~r 249 (255)
++.++++++
T Consensus 247 l~~~~~~~~ 255 (322)
T COG0142 247 LEKANEDQK 255 (322)
T ss_pred HHcCchhhH
Confidence 999998665
No 3
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=2.3e-37 Score=285.57 Aligned_cols=177 Identities=24% Similarity=0.314 Sum_probs=157.3
Q ss_pred hHHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 67 QYNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
.+++.|.+.+.+.++.+.++..|.+ .||||+||+++++++++++.. .+ .+..+|+++|++
T Consensus 16 ~v~~~l~~~~~~~~~~l~~~~~~~~~~~GKrlRp~l~ll~~~~~g~~---~~----~~~~~A~avEllH~asLiHDDI~D 88 (323)
T PRK10888 16 GVNAAILEQLNSDVQLINQLGYYIISGGGKRIRPMIAVLAARAVGYQ---GN----AHVTIAALIEFIHTATLLHDDVVD 88 (323)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHHhCCCchHHHHHHHHHHHHcCCC---hH----HHHHHHHHHHHHHHHHHHHccccc
Confidence 4456667777788888999999998 999999999999999998753 22 345679999999
Q ss_pred --------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHH
Q psy9101 134 --------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163 (255)
Q Consensus 134 --------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~ 163 (255)
+..++.||.+|+.+..+. .+++++|++++
T Consensus 89 ~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~s~~~y~~~i 167 (323)
T PRK10888 89 ESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDP-DITEENYMRVI 167 (323)
T ss_pred CCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 456899999999876554 48999999999
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHh
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQ 242 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~ 242 (255)
.+|||+| |.+||.+|++++|+ ++++.+.+++||+++|+||||+||++|++++++.+|| .|+|+++||+|||++++++
T Consensus 168 ~~KTa~l-f~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~ 245 (323)
T PRK10888 168 YSKTARL-FEAAAQCSGILAGC-TPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMH 245 (323)
T ss_pred HHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHH
Confidence 9999999 99999999999998 7888999999999999999999999999999999999 9999999999999999999
Q ss_pred hCCHHHHHHHH
Q psy9101 243 RATPAQRKLME 253 (255)
Q Consensus 243 ~a~~~~r~~l~ 253 (255)
.+++++++.++
T Consensus 246 ~~~~~~~~~l~ 256 (323)
T PRK10888 246 HGTPEQAAMIR 256 (323)
T ss_pred hCCHHHHHHHH
Confidence 98888887765
No 4
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=2.6e-36 Score=286.18 Aligned_cols=188 Identities=23% Similarity=0.248 Sum_probs=159.9
Q ss_pred HHHHHH-hHHHHHHhhhhcchhhHHHHhhccc-CC--CCccchHHHHHHHHHhcCCCCCC----------HHHHHHHHHH
Q psy9101 61 WYAKVL-QYNKAISNNVYLGTYFIVQVLQYNV-PS--GKKNRGLALVVAYKMLAQPSELT----------PENLHLAQIL 126 (255)
Q Consensus 61 ~~~~~l-~~~~~l~~~~~~~~~~i~~a~~y~~-~g--GKr~Rpll~lla~~~l~~~~~~~----------~~~~~~a~~l 126 (255)
.+++-| .+++.|.+.+.+..|.+.++..|.+ .| |||+||+++++++++++...... .+....+..+
T Consensus 87 ~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (422)
T PLN02890 87 LVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNI 166 (422)
T ss_pred HHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccchhhhHHHH
Confidence 444434 6678888889999999999999999 78 99999999999999987531100 0112345678
Q ss_pred HHHHHHH--------------------------------------------------------------HHHhhcccchh
Q psy9101 127 GWCVEIV--------------------------------------------------------------SLKTSMGQSLD 144 (255)
Q Consensus 127 A~avEll--------------------------------------------------------------~~~~~~GQ~lD 144 (255)
|+++|++ +..++.||.+|
T Consensus 167 AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~~~l~~Gq~ld 246 (422)
T PLN02890 167 AEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVEHLVTGETMQ 246 (422)
T ss_pred HHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 56789999999
Q ss_pred cccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-
Q psy9101 145 LSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK- 223 (255)
Q Consensus 145 l~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK- 223 (255)
+.+..+. .+++++|++++.+|||+| |.+||.+|++++|+ +++..+.+.+||+++|+||||+||++||+|+++.+||
T Consensus 247 ~~~~~~~-~~s~~~Yl~~i~~KTa~L-f~~s~~~gAilaga-~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~GK~ 323 (422)
T PLN02890 247 ITSSREQ-RRSMDYYMQKTYYKTASL-ISNSCKAVAILAGQ-TAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSASLGKG 323 (422)
T ss_pred HHhccCC-CCCHHHHHHHHHHhHHHH-HHHHHHHHHHHcCc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhCCC
Confidence 9887654 489999999999999999 99999999999999 7888899999999999999999999999999999999
Q ss_pred ccchHhcCCchHHHHHHHhhCCHHHHHHH
Q psy9101 224 IGTDIEDGKCSWLAVVALQRATPAQRKLM 252 (255)
Q Consensus 224 ~g~Di~~gK~T~p~i~al~~a~~~~r~~l 252 (255)
.|+|+++||+|||++++++. .++.++.+
T Consensus 324 ~g~DL~eGk~TlPvl~al~~-~~~l~~~l 351 (422)
T PLN02890 324 SLSDIRHGVITAPILFAMEE-FPQLREVV 351 (422)
T ss_pred chhhHhcCCccHHHHHHHhc-CHHHHHHH
Confidence 99999999999999999975 44444444
No 5
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=4.6e-36 Score=276.78 Aligned_cols=179 Identities=22% Similarity=0.253 Sum_probs=153.3
Q ss_pred hHHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 67 QYNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
.+++.+.+.+.+.+|.+.++..|.+ +||||+||+++++++++++.....++ .+..+|+++|++
T Consensus 16 ~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~ll~~~~~~~~~~~~~----~~~~~A~avEliH~asLiHDDiiD 91 (322)
T TIGR02749 16 LLTDNLKSLVGARHPILYAAAEHLFSAGGKRLRPAIVLLVSRATAEQQELTP----RHRRLAEITEMIHTASLVHDDVID 91 (322)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCCccccH----HHHHHHHHHHHHHHHHHHHccccc
Confidence 3446667777788889999999998 99999999999999999864321122 334568999999
Q ss_pred --------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHH
Q psy9101 134 --------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163 (255)
Q Consensus 134 --------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~ 163 (255)
+..++.||.+|+.+..+. .++++.|++|+
T Consensus 92 ~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~-~~~~~~y~~~~ 170 (322)
T TIGR02749 92 ESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFDS-DLSLEDYLEKS 170 (322)
T ss_pred CccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHH
Confidence 457899999998776544 48999999999
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHh
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQ 242 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~ 242 (255)
.+|||+| |.+||.+|++++|+ +++..+.+.+||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++
T Consensus 171 ~~KTa~L-~~~~~~~ga~~ag~-~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~ 248 (322)
T TIGR02749 171 FYKTASL-VAASSKAAAVLSDV-PSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALE 248 (322)
T ss_pred HccHHHH-HHHHHHHHHHHcCc-CHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHh
Confidence 9999999 99999999999999 7888999999999999999999999999999999999 9999999999999999997
Q ss_pred hCCHHHHHHHH
Q psy9101 243 RATPAQRKLME 253 (255)
Q Consensus 243 ~a~~~~r~~l~ 253 (255)
. .++.++.+.
T Consensus 249 ~-~~~~~~~l~ 258 (322)
T TIGR02749 249 E-EPKLSELIE 258 (322)
T ss_pred c-ChHHHHHHH
Confidence 6 445555443
No 6
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=4.3e-36 Score=276.61 Aligned_cols=168 Identities=18% Similarity=0.247 Sum_probs=147.3
Q ss_pred hHHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 67 QYNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
.+++.+.+.+.+.++.+.++..|.+ +||||+||+++++++++++.+ . +.+..+|+++|++
T Consensus 15 ~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKriRp~L~ll~~~~~~~~----~---~~~~~~A~aiEliH~asLiHDDI~D 87 (319)
T TIGR02748 15 SIEKELEKAVQAEHPVLSEASLHLLEAGGKRIRPVFVLLAGKFGDYD----L---DAIKHVAVALELIHMASLVHDDVID 87 (319)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCC----H---HHHHHHHHHHHHHHHHHHHhccccC
Confidence 3445566666677788899989988 999999999999999987542 2 2345678999999
Q ss_pred --------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHH
Q psy9101 134 --------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163 (255)
Q Consensus 134 --------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~ 163 (255)
+..++.||.+|+.+..+. ..++++|++++
T Consensus 88 ~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~-~~~~~~Y~~~i 166 (319)
T TIGR02748 88 DADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCRGEIEQIKDKYNF-DQNLRTYLRRI 166 (319)
T ss_pred CCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 567899999999876554 37899999999
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHh
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQ 242 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~ 242 (255)
.+|||+| |.+||.+|++++|+ +++..+.+.+||.++|++|||+||++|++++++.+|| .|+|+++||+|||++++++
T Consensus 167 ~~KTa~L-~~~~~~~ga~~ag~-~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 244 (319)
T TIGR02748 167 KRKTALL-IAASCQLGAIASGA-NEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAME 244 (319)
T ss_pred HHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhc
Confidence 9999999 99999999999998 7888899999999999999999999999999999999 9999999999999999998
Q ss_pred hC
Q psy9101 243 RA 244 (255)
Q Consensus 243 ~a 244 (255)
..
T Consensus 245 ~~ 246 (319)
T TIGR02748 245 DP 246 (319)
T ss_pred Cc
Confidence 53
No 7
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=3.7e-36 Score=274.86 Aligned_cols=164 Identities=27% Similarity=0.353 Sum_probs=141.2
Q ss_pred hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------------------------
Q psy9101 80 TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------------- 133 (255)
Q Consensus 80 ~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------------- 133 (255)
++.+.+++.|.+ +||||+||+++++++++++.+ ++ .+..+|++||++
T Consensus 29 ~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g~~----~~---~~~~~A~avEliH~aSLiHDDip~~D~s~~RRG~pt~ 101 (299)
T PRK10581 29 NTPVVEAMQYGALLGGKRLRPFLVYATGQMFGVS----TN---TLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTC 101 (299)
T ss_pred chHHHHHHHHHHhcCcccHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHHcCcccccCCCccCCCcCh
Confidence 455777788988 999999999999999998753 22 345679999999
Q ss_pred -------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHh
Q psy9101 134 -------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVK 164 (255)
Q Consensus 134 -------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~ 164 (255)
..+|+.||.+|+.+..+ .++.+.|++|+.
T Consensus 102 h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~ld~~~~~~--~~~~~~y~~i~~ 179 (299)
T PRK10581 102 HVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQALDLEAEGK--QVPLDALERIHR 179 (299)
T ss_pred HHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHHHHhccCC--CCCHHHHHHHHH
Confidence 12478999999988653 478999999999
Q ss_pred ccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhh
Q psy9101 165 YKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQR 243 (255)
Q Consensus 165 ~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~ 243 (255)
+|||+| |.+||.+|++++|+.+++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++.
T Consensus 180 ~KTa~L-~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~ 258 (299)
T PRK10581 180 HKTGAL-IRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQ 258 (299)
T ss_pred HhhHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHH
Confidence 999999 9999999999999833457899999999999999999999999999999999 99999999999999999988
Q ss_pred CCHHHHHHHH
Q psy9101 244 ATPAQRKLME 253 (255)
Q Consensus 244 a~~~~r~~l~ 253 (255)
+....++.++
T Consensus 259 a~~~a~~~~~ 268 (299)
T PRK10581 259 ARKKARDLID 268 (299)
T ss_pred HHHHHHHHHH
Confidence 7665555443
No 8
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1.5e-35 Score=273.37 Aligned_cols=177 Identities=21% Similarity=0.223 Sum_probs=149.9
Q ss_pred HHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------------
Q psy9101 68 YNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------- 133 (255)
Q Consensus 68 ~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------- 133 (255)
+++.+.+.+.+..|.+.+++.|.+ +||||+||+++++++++++++..... .+..+|+++|++
T Consensus 18 i~~~l~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~L~ll~~~~~~~~~~~~~----~~~~~A~aiEllH~asLiHDDi~D~ 93 (323)
T CHL00151 18 LEDNLKKLIGSGHPILYAAAKHLFSAGGKRIRPAIVLLVAKATGGNMEIKT----SQQRLAEITEIIHTASLVHDDVIDE 93 (323)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCccccH----HHHHHHHHHHHHHHHHHHHcccccC
Confidence 345556666677788899999998 99999999999999999876321122 234568999999
Q ss_pred -------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHh
Q psy9101 134 -------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVK 164 (255)
Q Consensus 134 -------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~ 164 (255)
+..++.||.+|.....+. .+++++|++++.
T Consensus 94 s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~yl~~i~ 172 (323)
T CHL00151 94 CSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAEGEIRQGLVQFDT-TLSILNYIEKSF 172 (323)
T ss_pred ccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHH
Confidence 456799999998765544 478999999999
Q ss_pred ccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhh
Q psy9101 165 YKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQR 243 (255)
Q Consensus 165 ~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~ 243 (255)
+|||+| |++||.+|++++|+ +++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||++++++.
T Consensus 173 ~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~ 250 (323)
T CHL00151 173 YKTASL-IAASCKAAALLSDA-DEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQ 250 (323)
T ss_pred hHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhc
Confidence 999999 99999999999998 7888999999999999999999999999999999999 99999999999999999975
Q ss_pred CCHHHHHHH
Q psy9101 244 ATPAQRKLM 252 (255)
Q Consensus 244 a~~~~r~~l 252 (255)
.++.++.+
T Consensus 251 -~~~~~~~l 258 (323)
T CHL00151 251 -NSKLAKLI 258 (323)
T ss_pred -ChHHHHHH
Confidence 34444443
No 9
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=2.7e-35 Score=279.11 Aligned_cols=190 Identities=24% Similarity=0.259 Sum_probs=158.1
Q ss_pred HHHHHHHH-hHHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH---
Q psy9101 59 TKWYAKVL-QYNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV--- 133 (255)
Q Consensus 59 ~~~~~~~l-~~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll--- 133 (255)
..++.+-+ .+++.|.+.+.+.+|.+.++..|.+ +||||+||+++++++++++.....+. ..+.+..+|+++|++
T Consensus 98 ~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKriRP~Lvll~a~a~g~~~g~~~-~~~~~~~lAaaiEliH~A 176 (416)
T PLN02857 98 FEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGLKE-LTTEHRRLAEITEMIHTA 176 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCCCccHhHHHHHHHHHHhccccCCCc-chHHHHHHHHHHHHHHHH
Confidence 33444434 5667778888888999999999999 99999999999999998753100010 012345678999999
Q ss_pred -----------------------------------------------------------HHHhhcccchhcccCCCCCCC
Q psy9101 134 -----------------------------------------------------------SLKTSMGQSLDLSTANDLSKF 154 (255)
Q Consensus 134 -----------------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~ 154 (255)
+..++.||.+|+.+..+. .+
T Consensus 177 SLIHDDI~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~~~l~~Gei~q~~~~~~~-~~ 255 (416)
T PLN02857 177 SLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDFASGEIKQASSLFDC-DV 255 (416)
T ss_pred HHHHCccccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhHHHHHhcccCC-CC
Confidence 456789999998876654 48
Q ss_pred CHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCc
Q psy9101 155 TMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKC 233 (255)
Q Consensus 155 t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~ 233 (255)
++++|++++++|||+| |.+||.+|++++|+ +++..+.+.+||.++|+||||+||++|++++++.+|| .|+|+.+||+
T Consensus 256 s~~~Yl~~i~~KTa~L-~~~a~~~gallaga-~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~ 333 (416)
T PLN02857 256 TLDEYLLKSYYKTASL-IAASTKSAAIFSGV-DSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNL 333 (416)
T ss_pred CHHHHHHHHHHhHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCc
Confidence 9999999999999999 99999999999999 8888999999999999999999999999999999999 9999999999
Q ss_pred hHHHHHHHhhCCHHHHHHHH
Q psy9101 234 SWLAVVALQRATPAQRKLME 253 (255)
Q Consensus 234 T~p~i~al~~a~~~~r~~l~ 253 (255)
|||++++++. .++.++.|.
T Consensus 334 TlPli~al~~-~~~l~~~l~ 352 (416)
T PLN02857 334 TAPVIFALEK-EPELREIIE 352 (416)
T ss_pred cHHHHHHHhc-ChHHHHHHh
Confidence 9999999986 556665553
No 10
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=4.8e-35 Score=262.13 Aligned_cols=156 Identities=33% Similarity=0.500 Sum_probs=140.2
Q ss_pred hcccCCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH----------------------------------
Q psy9101 88 QYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV---------------------------------- 133 (255)
Q Consensus 88 ~y~~~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll---------------------------------- 133 (255)
.|...||||+||+++++++++++.+ . +.+..+|+++|++
T Consensus 7 ~~~~~~GK~~Rp~l~~~~~~~~~~~----~---~~~~~~a~avEliH~asLIhDDI~D~s~~RRG~pt~~~~~G~~~Ail 79 (260)
T PF00348_consen 7 YYILRGGKRIRPLLVLLAAEALGGD----P---EKAIPLAAAVELIHAASLIHDDIIDNSDLRRGKPTVHKKFGNAIAIL 79 (260)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHTTCH----H---HHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECHHHHHHHHHHHH
T ss_pred HHhhCCCccHHHHHHHHHHHHhCCC----H---HHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCccccccccccchhh
Confidence 6666999999999999999999853 2 3566789999999
Q ss_pred -----------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHH
Q psy9101 134 -----------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVAL 178 (255)
Q Consensus 134 -----------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~l 178 (255)
......||..|+.+... .+++++|++|+++|||+| |++||++
T Consensus 80 ~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~--~~~~~~y~~i~~~KTg~l-~~~~~~~ 156 (260)
T PF00348_consen 80 AGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDK--DPTEEEYLEIIRLKTGSL-FALACQL 156 (260)
T ss_dssp HHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS--STSHHHHHHHHHHHTHHH-HHHHHHH
T ss_pred hchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccc--cccHHHHHHHHhhcchHH-HHHHHHH
Confidence 33456779999988754 589999999999999999 9999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhhCCHHHHHHHHh
Q psy9101 179 AMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 179 ga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~a~~~~r~~l~~ 254 (255)
|++++|+ +++..+.+++||+++|++|||+||++|++++++..|| .|+|+.+||+|||++++++.+++++++.+..
T Consensus 157 ga~lag~-~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~~~~~~l~~ 232 (260)
T PF00348_consen 157 GAILAGA-DEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERAREELRELLQE 232 (260)
T ss_dssp HHHHTTS-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccc-hhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHHHHHHHHHH
Confidence 9999999 7889999999999999999999999999999999999 8999999999999999999988888888764
No 11
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=99.98 E-value=3.4e-32 Score=243.48 Aligned_cols=152 Identities=34% Similarity=0.540 Sum_probs=136.3
Q ss_pred hhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH--------------------------
Q psy9101 81 YFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV-------------------------- 133 (255)
Q Consensus 81 ~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll-------------------------- 133 (255)
+.+.+++.|.+ +||||+||+++++++++++.+ + .+.+..+|||+|++
T Consensus 4 ~~l~~~~~~~~~~~GK~~Rp~l~~~~~~~~g~~---~---~~~~~~la~aiEllh~asLIhDDI~D~s~~RRG~p~~~~~ 77 (259)
T cd00685 4 ELLREALRYLLLAGGKRLRPLLVLLAARALGGP---E---LEAALRLAAAIELLHTASLVHDDVMDNSDLRRGKPTVHKV 77 (259)
T ss_pred hHHHHHHHHHHHcCCccHhHHHHHHHHHHhCCC---c---hHHHHHHHHHHHHHHHHHHHHhhhccCCcccCCCCcHHHH
Confidence 44666668886 999999999999999999764 2 13456789999999
Q ss_pred ---------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHH
Q psy9101 134 ---------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQL 174 (255)
Q Consensus 134 ---------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~ 174 (255)
...++.||.+|+.+..+. .++++.|.+|+.+|||+| |.+
T Consensus 78 ~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~-~~~~~~y~~~~~~KT~~l-~~~ 155 (259)
T cd00685 78 FGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDT-DVTEEEYLRIIRLKTAAL-FAA 155 (259)
T ss_pred hCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCHHHHHHHHHHhHHHH-HHH
Confidence 567899999999887642 489999999999999999 999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHH
Q psy9101 175 PVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVAL 241 (255)
Q Consensus 175 ~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al 241 (255)
+|.+|++++|+ +++..+.+++||.++|++|||+||++|++++++.+|| .|+|+++||+|||+++++
T Consensus 156 ~~~~~a~l~~~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l 222 (259)
T cd00685 156 APLLGALLAGA-DEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL 222 (259)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH
Confidence 99999999998 7888999999999999999999999999999999999 999999999999999998
No 12
>KOG0776|consensus
Probab=99.94 E-value=1.4e-26 Score=214.82 Aligned_cols=166 Identities=25% Similarity=0.282 Sum_probs=143.3
Q ss_pred chhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------------------
Q psy9101 79 GTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------------ 133 (255)
Q Consensus 79 ~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------------ 133 (255)
.++.+..++.|.+ .||||.||++++.+++..+.. +. ..++.+|+++||+
T Consensus 91 ~~~~i~~a~ry~~la~gKr~rP~l~~~~~e~~~~g--~~----~~q~~~A~i~EMIHtaSLIHDDv~~mD~~d~RRGkpt 164 (384)
T KOG0776|consen 91 EPLLISEAMRYLLLAGGKRVRPLLCLAACELVGSG--DE----SSQRSLAEIVEMIHTASLIHDDVPCMDDADLRRGKPT 164 (384)
T ss_pred ccchhHHHHHHHHHhcccccCchhhhhHHHhcccc--cc----HHHHHHHHHHHHHHHHHHHhcCcccccccccccCCCC
Confidence 3566777888988 899999999999999998731 11 2355678999999
Q ss_pred ----------------------------------------HHHhhcccchhcccC---CCCCCCCHHHHHHHHhccccch
Q psy9101 134 ----------------------------------------SLKTSMGQSLDLSTA---NDLSKFTMDRYEAIVKYKTAFY 170 (255)
Q Consensus 134 ----------------------------------------~~~~~~GQ~lDl~~~---~~~~~~t~~~y~~i~~~KTa~L 170 (255)
+..++.|+..+.... .++++..++.|..++.+|||+|
T Consensus 165 ~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI~dLv~ge~~~~~~~~~~~d~~~~~~e~~e~~~~~KTAsL 244 (384)
T KOG0776|consen 165 NHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASAIADLVRGEFTQGLVAGEGLDLDDVGLEYLEFKTLLKTASL 244 (384)
T ss_pred cchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhhhcccccccccccCCcchHHHHHHHHHHHHHH
Confidence 556777887777665 2555567899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhhCCHHHH
Q psy9101 171 SFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRATPAQR 249 (255)
Q Consensus 171 tf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~a~~~~r 249 (255)
++.+|.+|++++|. +++.++.+++||+++|++||+.||++|++...+.+|| .|.|+..|+.|+|+++++++. |+.+
T Consensus 245 -la~Sc~~~aILgg~-s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~Lf~~e~~-pe~~ 321 (384)
T KOG0776|consen 245 -LAKSCVAAAILGGG-SEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPVLFALEKS-PELR 321 (384)
T ss_pred -HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhhhhhccccccchhhhhhC-hHHH
Confidence 99999999999998 8999999999999999999999999999999999999 999999999999999999985 5666
Q ss_pred HHHH
Q psy9101 250 KLME 253 (255)
Q Consensus 250 ~~l~ 253 (255)
+.|.
T Consensus 322 e~l~ 325 (384)
T KOG0776|consen 322 EKLE 325 (384)
T ss_pred HHHH
Confidence 6664
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=99.91 E-value=1.3e-23 Score=184.01 Aligned_cols=108 Identities=32% Similarity=0.461 Sum_probs=98.8
Q ss_pred HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 134 SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 134 ~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
...++.||.+|+.+..+. ..|+++|.+++++|||++ |.++|..++.+++. +++..+.+.+||.++|++|||.||++|
T Consensus 94 ~~~~~~Gq~~Dl~~~~~~-~~t~~~y~~~~~~Kta~l-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lG~a~Qi~dd~~D 170 (236)
T cd00867 94 LRELLEGQALDLEFERDT-YETLDEYLEYCRYKTAGL-VGLLCLLGAGLSGA-DDEQAEALKDYGRALGLAFQLTDDLLD 170 (236)
T ss_pred HHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhccHHH-HHHHHHHHHHHcCc-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 577899999999887642 479999999999999999 99999999999997 778899999999999999999999999
Q ss_pred cCCCCCccCCccchHhcCCchHHHHHHHhhC
Q psy9101 214 CFGTPDVTGKIGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 214 ~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a 244 (255)
+++|.+.+||.|+|+++||+|||.+++.+..
T Consensus 171 ~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~ 201 (236)
T cd00867 171 VFGDAEELGKVGSDLREGRITLPVILARERA 201 (236)
T ss_pred ccCChHHHCccHHHHHcCCchHHHHHHHHHH
Confidence 9999999999999999999999999985443
No 14
>KOG0777|consensus
Probab=99.71 E-value=5.7e-17 Score=141.50 Aligned_cols=142 Identities=29% Similarity=0.378 Sum_probs=119.6
Q ss_pred hccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH---------------------------------
Q psy9101 88 QYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV--------------------------------- 133 (255)
Q Consensus 88 ~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll--------------------------------- 133 (255)
.|.+ .+||.+|--+.+..-+.+.-| .+. +| .++-.+||+
T Consensus 28 ~yilq~PGKqfR~~L~~afNhwl~~P----~dk--La-ii~~ivemLHNsSLLIDDIEDNs~LRRG~pvaHsIyGvpStI 100 (322)
T KOG0777|consen 28 NYILQKPGKQFRLNLIVAFNHWLNLP----KDK--LA-IISQIVEMLHNSSLLIDDIEDNSPLRRGQPVAHSIYGVPSTI 100 (322)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHhCC----HHH--HH-HHHHHHHHHhccceeeccccccchhhcCCcchhhhccCcchh
Confidence 6777 899999999999888888754 442 22 345678888
Q ss_pred -----------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhC
Q psy9101 134 -----------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAG 184 (255)
Q Consensus 134 -----------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag 184 (255)
...+..||.+|+.|+..+.++|++.|..|+-.|||-| |.+++++.-.++.
T Consensus 101 NtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcPtee~Yk~Mv~~KTGGL-F~La~rLMqlfS~ 179 (322)
T KOG0777|consen 101 NTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCPTEEMYKNMVMNKTGGL-FRLALRLMQLFSH 179 (322)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCCCHHHHHHHHHHhcccH-HHHHHHHHHHHHh
Confidence 4567899999999998777899999999999999999 9999999998886
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHh
Q psy9101 185 MQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQ 242 (255)
Q Consensus 185 ~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~ 242 (255)
- . +.+..+-.-+|++|||+|||+++-..+-...| -..|+.|||.++|+++|+.
T Consensus 180 ~-k----edl~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~ 233 (322)
T KOG0777|consen 180 H-K----EDLVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALK 233 (322)
T ss_pred c-c----hhHHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhh
Confidence 4 2 24667778899999999999999766556678 8999999999999999994
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.12 E-value=4e-10 Score=95.69 Aligned_cols=102 Identities=29% Similarity=0.387 Sum_probs=85.6
Q ss_pred HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 134 SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 134 ~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
...++.||..|+.+..+ ..+|.++|..+.+.|||.+ +...+..++...+. +......+..++..+|.+||+.||+.|
T Consensus 88 ~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ql~nDl~~ 164 (243)
T cd00385 88 LLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKTAGL-VGALCLLGAGLSGG-EAELLEALRKLGRALGLAFQLTNDLLD 164 (243)
T ss_pred HHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999998764 3489999999999999998 88888888888776 566788999999999999999999999
Q ss_pred cCCCCCccCCccchHhcCCchHHHHHHHhhCCH
Q psy9101 214 CFGTPDVTGKIGTDIEDGKCSWLAVVALQRATP 246 (255)
Q Consensus 214 ~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a~~ 246 (255)
+.++.+.. +|++|+|.+++.+...+
T Consensus 165 ~~~e~~~~--------~~~~~l~~~~~~~~~~~ 189 (243)
T cd00385 165 YEGDAERG--------EGKCTLPVLYALEYGVP 189 (243)
T ss_pred ccCCHHHh--------CCchHHHHHHHHHhCCh
Confidence 98764210 48999999999887653
No 16
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=92.70 E-value=2.3 Score=37.98 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=53.8
Q ss_pred HHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy9101 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214 (255)
Q Consensus 135 ~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~ 214 (255)
..++.|...|+.... -.|.+++...+..=-|.. ..+++. +++...+ .....++.++|.|+|+.+=+.|+
T Consensus 96 ~~li~g~~~Dl~~~~---~~t~~eL~~Y~~~vAg~v-g~l~~~---i~~~~~~----~~~~~~A~~lG~AlqltnilRdv 164 (265)
T cd00683 96 RDLLAGMAMDLDKRR---YETLDELDEYCYYVAGVV-GLMLLR---VFGASSD----EAALERARALGLALQLTNILRDV 164 (265)
T ss_pred HHHHHHHHHhCCCCC---CCCHHHHHHHHHHhHHHH-HHHHHH---HhCCCCC----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788889998643 246777777777766655 333332 2222012 34668899999999999988886
Q ss_pred CCCCCccCCccchHhcCCchHHHH
Q psy9101 215 FGTPDVTGKIGTDIEDGKCSWLAV 238 (255)
Q Consensus 215 ~gd~~~~GK~g~Di~~gK~T~p~i 238 (255)
- .|...|++.+|.=
T Consensus 165 ~----------eD~~~gR~YlP~d 178 (265)
T cd00683 165 G----------EDARRGRIYLPRE 178 (265)
T ss_pred H----------HHHccCCCcCCHH
Confidence 3 4566666666643
No 17
>PLN02632 phytoene synthase
Probab=90.21 E-value=0.48 Score=44.27 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=57.4
Q ss_pred HHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9101 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQD--VEVHRQARTLLLEMGHFFQVQDDYL 212 (255)
Q Consensus 135 ~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~--~~~~~~l~~~g~~iGiaFQI~DD~l 212 (255)
..++.|..+|+.... -.|.+++..-+++--|.+ ..+++.+ ++.. + ....+.+...+.++|+|+|+.|=+.
T Consensus 143 ~~li~g~~~Dl~~~~---~~t~~eL~~Ycy~vAgtV-G~l~l~v---lg~~-~~~~~~~~~~~~~A~~lG~AlQltNILR 214 (334)
T PLN02632 143 RDMIEGMRMDLVKSR---YENFDELYLYCYYVAGTV-GLMSVPV---MGIA-PESKASTESVYNAALALGIANQLTNILR 214 (334)
T ss_pred HHHHHHHHHHhccCC---CCCHHHHHHHHHHhhHHH-HHHHHHH---hCCC-CccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 566789889987643 247788877777766666 4444433 2221 2 1223456788999999999999888
Q ss_pred ccCCCCCccCCccchHhcCCchHHH
Q psy9101 213 DCFGTPDVTGKIGTDIEDGKCSWLA 237 (255)
Q Consensus 213 D~~gd~~~~GK~g~Di~~gK~T~p~ 237 (255)
|+ +.|...|++-+|.
T Consensus 215 Dv----------~eD~~~GRvYLP~ 229 (334)
T PLN02632 215 DV----------GEDARRGRVYLPQ 229 (334)
T ss_pred HH----------HHHHhCCceeCCH
Confidence 86 4566777776664
No 18
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=89.52 E-value=0.92 Score=40.68 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=56.7
Q ss_pred HHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy9101 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214 (255)
Q Consensus 135 ~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~ 214 (255)
..++.|+..|+.... -.|.+++..-++.-.|.+ ..+.+.+ ++.. + ......+.++|.|+|+.|=+.|+
T Consensus 88 ~~li~g~~~Dl~~~~---~~t~~dL~~Y~~~vAg~v-g~l~~~l---lg~~-~----~~~~~~a~~lG~AlqltnilRdv 155 (266)
T TIGR03465 88 LEVIDGMEMDLEQTR---YPDFAELDLYCDRVAGAV-GRLSARI---FGAT-D----ARTLEYAHHLGRALQLTNILRDV 155 (266)
T ss_pred HHHHHHHHHHcCCCC---CCCHHHHHHHHHHhHHHH-HHHHHHH---hCCC-C----hhHHHHHHHHHHHHHHHHHHHHh
Confidence 556789989987653 257888887777766666 5444433 3322 3 23577899999999999988886
Q ss_pred CCCCCccCCccchHhcCCchHHH
Q psy9101 215 FGTPDVTGKIGTDIEDGKCSWLA 237 (255)
Q Consensus 215 ~gd~~~~GK~g~Di~~gK~T~p~ 237 (255)
+.|...|++.+|.
T Consensus 156 ----------~eD~~~gR~ylP~ 168 (266)
T TIGR03465 156 ----------GEDARRGRIYLPA 168 (266)
T ss_pred ----------HHHHhCCCeecCH
Confidence 3567777777775
No 19
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=86.72 E-value=1.7 Score=38.98 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=53.2
Q ss_pred HHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy9101 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214 (255)
Q Consensus 135 ~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~ 214 (255)
..++.|...|+.... -.|.+++..-+++-.|.. ..+++. ++ |..+++ ...++.++|.|+|+.|=+.|+
T Consensus 89 ~~li~~~~~Dl~~~~---~~t~~eL~~Y~~~vAg~v-g~l~~~---i~-g~~~~~----~~~~A~~lG~AlQltniLRDl 156 (266)
T TIGR03464 89 LDLLDAFRQDVVVTR---YATWAELLDYCRYSANPV-GRLVLD---LY-GASDPE----NVALSDAICTALQLINFWQDV 156 (266)
T ss_pred HHHHHHHHHhccCCC---CCCHHHHHHHHHHhHHHH-HHHHHH---Hc-CCCChh----HHHHHHHHHHHHHHHHHHHhh
Confidence 445678888887653 247777777777666666 444333 22 332322 346789999999999988886
Q ss_pred CCCCCccCCccchHhcCCchHHHH
Q psy9101 215 FGTPDVTGKIGTDIEDGKCSWLAV 238 (255)
Q Consensus 215 ~gd~~~~GK~g~Di~~gK~T~p~i 238 (255)
+.|...|++-+|.=
T Consensus 157 ----------~eD~~~gR~YLP~~ 170 (266)
T TIGR03464 157 ----------GVDYRKGRVYLPRD 170 (266)
T ss_pred ----------HHHHhcCCccCCHH
Confidence 35666677766643
No 20
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=86.10 E-value=1.3 Score=39.34 Aligned_cols=87 Identities=18% Similarity=0.120 Sum_probs=57.6
Q ss_pred HHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy9101 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214 (255)
Q Consensus 135 ~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~ 214 (255)
..++.|...|+.... -.|.+++..-+++=+|++ ..+.+.+ ++...+. ..+...+.++|.++|+.|=+.|+
T Consensus 94 ~~li~~~~~dl~~~~---~~t~~~L~~Y~~~vag~v-g~l~~~~---~~~~~~~---~~~~~~a~~lG~alql~nilRd~ 163 (267)
T PF00494_consen 94 LELIDGMEMDLEFTP---YETFADLERYCYYVAGSV-GLLLLQL---LGAHDPD---EAARDAARALGRALQLTNILRDI 163 (267)
T ss_dssp HHHHHHHHHCTT-S-----SSHHHHHHHHHHHTHHH-HHHHHHH---HHSSTSH---HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhcccccCCC---CCCHHHHHHHHHHHHHHH-HHHHHHH---hccccch---hhHHHHHHHHHHHHHHHHHHHHh
Confidence 566788889987654 248889888888888887 5444332 2221122 46788899999999999988885
Q ss_pred CCCCCccCCccch-HhcCCchHHHHHHH
Q psy9101 215 FGTPDVTGKIGTD-IEDGKCSWLAVVAL 241 (255)
Q Consensus 215 ~gd~~~~GK~g~D-i~~gK~T~p~i~al 241 (255)
+.| ...|++-||.=..-
T Consensus 164 ----------~~D~~~~gR~ylP~d~l~ 181 (267)
T PF00494_consen 164 ----------PEDALRRGRIYLPLDDLR 181 (267)
T ss_dssp ----------HHH-HHTT---S-HHHHH
T ss_pred ----------HHHHHhcccccCCchhHH
Confidence 467 77888888765543
No 21
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=82.37 E-value=3 Score=39.13 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=54.3
Q ss_pred HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 134 SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 134 ~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
+..|+.|...|+....- +..|.++|..-+.+=-|.. =.+.+.+-+. +|..++ ......+++..+|+|+|+.|=+.|
T Consensus 110 ~~~M~~GMa~dl~~~~~-~~~T~~dL~~YCy~VAG~V-G~mlt~l~~~-~~~~~~-~~~~~~~~A~~lG~aLQlTNIlRD 185 (336)
T TIGR01559 110 TRRMGNGMADFIDKEVT-NEQTVGDYDKYCHYVAGLV-GIGLSRLFVA-SGFEDP-SLGESEALSNSMGLFLQKTNIIRD 185 (336)
T ss_pred HHHHHHHHHHHHhcCcC-CCCCHHHHHHHHhccccHH-HHHHHHHHhh-cCCCCc-chhhhHHHHHHHHHHHHHHHHHHH
Confidence 35677888888765431 0157777766665544443 2222222111 232122 222346889999999999998888
Q ss_pred cCCCCCccCCccchHhcCCchHHHH
Q psy9101 214 CFGTPDVTGKIGTDIEDGKCSWLAV 238 (255)
Q Consensus 214 ~~gd~~~~GK~g~Di~~gK~T~p~i 238 (255)
+ +.|+.+|++=||.=
T Consensus 186 v----------~ED~~~GR~YlP~e 200 (336)
T TIGR01559 186 Y----------LEDINEGRMFWPRE 200 (336)
T ss_pred H----------HhHHhCCCCCCCHH
Confidence 6 35667777777744
No 22
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=64.63 E-value=8.5 Score=29.02 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Q psy9101 187 DVEVHRQARTLLLEMGHFFQVQD 209 (255)
Q Consensus 187 ~~~~~~~l~~~g~~iGiaFQI~D 209 (255)
.+...+.+-+||..+|-.||++=
T Consensus 14 Eet~~e~llRYGLf~GAIFQliC 36 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLIC 36 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999864
No 23
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=54.09 E-value=25 Score=32.60 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=31.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 178 LAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 178 lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
+++.+.|. +.+....+...-+-+=.+..|.||+.| +++++.|++|+-..+
T Consensus 54 l~~~~~g~-~~~~~~~~A~avEllH~asLiHDDI~D-----------~s~~RRG~pt~~~~~ 103 (323)
T PRK10888 54 LAARAVGY-QGNAHVTIAALIEFIHTATLLHDDVVD-----------ESDMRRGKATANAAF 103 (323)
T ss_pred HHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHccccc-----------CCcccCCCCCHHHHh
Confidence 34444555 444445566666777789999999988 245666666654443
No 24
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=49.54 E-value=42 Score=29.76 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=23.9
Q ss_pred HHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 179 AMHMAGMQDV-EVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 179 ga~lag~~~~-~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
.+.+.|. ++ +....+...-+-+=.++-|.||+.|
T Consensus 29 ~~~~~g~-~~~~~~~~la~aiEllh~asLIhDDI~D 63 (259)
T cd00685 29 AARALGG-PELEAALRLAAAIELLHTASLVHDDVMD 63 (259)
T ss_pred HHHHhCC-CchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3334444 33 5556677777788899999999988
No 25
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=44.89 E-value=87 Score=27.74 Aligned_cols=37 Identities=24% Similarity=0.171 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
+.+.+.+.|. +.+....+...-+-+=.++=|.||+.|
T Consensus 21 ~~~~~~~~~~-~~~~~~~~a~avEliH~asLIhDDI~D 57 (260)
T PF00348_consen 21 VLLAAEALGG-DPEKAIPLAAAVELIHAASLIHDDIID 57 (260)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3444455554 566677788888888899999999988
No 26
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=44.43 E-value=44 Score=30.69 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=49.6
Q ss_pred HHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy9101 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214 (255)
Q Consensus 135 ~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~ 214 (255)
..++.|+..|+..... .+++++..-+.+=-|.. ...+..+++- +. .......+..+|.|+|..+=+.|+
T Consensus 106 ~~~~da~~~Dl~~~~y---~~~~eL~~Yc~~vAg~v----G~l~~~Il~~--~~--~~~~~~~a~~lG~A~QlvNilRdv 174 (288)
T COG1562 106 PALIDAMRMDLDRTRY---LDFEELEEYCYGVAGAV----GLLLARILGP--DK--DAATRAYARGLGLALQLVNILRDV 174 (288)
T ss_pred HHHHHHHHHHhhhccc---cCHHHHHHHHHHhHHHH----HHHHHHHhCc--cc--chhhHHHHHHHHHHHHHHHHHHHh
Confidence 5567889999987652 34556555444433333 1222233332 11 234555566699999999988885
Q ss_pred CCCCCccCCccchHhcCCchHH
Q psy9101 215 FGTPDVTGKIGTDIEDGKCSWL 236 (255)
Q Consensus 215 ~gd~~~~GK~g~Di~~gK~T~p 236 (255)
|.|...|++=||
T Consensus 175 ----------~eD~~~GrvylP 186 (288)
T COG1562 175 ----------GEDRRRGRVYLP 186 (288)
T ss_pred ----------HHHHhCCcccCC
Confidence 567777777777
No 27
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=44.06 E-value=52 Score=30.07 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhC
Q psy9101 201 MGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 201 iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a 244 (255)
...++.+.+|+.|+. .|-+.||.|+|+.++.+.+
T Consensus 172 ~~~a~~ii~~irDie----------~Dr~~G~~Tlpv~lG~~~a 205 (282)
T PRK13105 172 WGMASHAFGAVQDVV----------ADREAGIASIATVLGARRT 205 (282)
T ss_pred HHHHHHHHHhCcchH----------hHHHcCCccchHHhcHHHH
Confidence 356899999999975 4678999999999998765
No 28
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=38.87 E-value=58 Score=30.09 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=23.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 179 AMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 179 ga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
++.+.|. +.+....+...-+-+=.|.=|.||+.|
T Consensus 54 ~~~~~~~-~~~~~~~~A~aiEliH~asLiHDDI~D 87 (319)
T TIGR02748 54 AGKFGDY-DLDAIKHVAVALELIHMASLVHDDVID 87 (319)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 3444555 444445566666777788999999988
No 29
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=37.75 E-value=71 Score=28.54 Aligned_cols=62 Identities=13% Similarity=-0.046 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhC
Q psy9101 172 FQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 172 f~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a 244 (255)
+..+...|....+. .....-.+.-+..-....+++..|+.|.. .|.+.|+.|+|+.++-+++
T Consensus 139 ~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~D~e----------~D~~~G~~Tl~v~~G~~~~ 200 (279)
T PRK12884 139 TGMTFIFGGIAVGE-LNEAVILLAAMAFLMTLGREIMKDIEDVE----------GDRLRGARTLAILYGEKIA 200 (279)
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHHHHHHHhhhhh----------hHHHcCCeeechHhcHHHH
Confidence 44455555554443 22222223333445556778888888864 5778999999999987643
No 30
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=36.31 E-value=86 Score=26.96 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhC
Q psy9101 174 LPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 174 ~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a 244 (255)
....+|....+.......-.+.-+..-++......+|+.|+. .|.+.|+.|+|+.++.+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~----------~D~~~g~~Tl~v~~G~~~~ 191 (257)
T PF01040_consen 131 LLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIE----------GDRKAGRRTLPVLLGEKKA 191 (257)
T ss_pred HhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHcCCcchHHHHHHHHH
Confidence 334444444443112233334444466778888888999975 4678999999999976553
No 31
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=35.86 E-value=3.1e+02 Score=24.59 Aligned_cols=82 Identities=18% Similarity=0.060 Sum_probs=45.4
Q ss_pred CHHHHHHHHhccccchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHH-HHHHHHHHHhhhhccCC--CCCccCCccchH
Q psy9101 155 TMDRYEAIVKYKTAFYSFQLPVALAMHMA---GMQDVEVHRQARTLLL-EMGHFFQVQDDYLDCFG--TPDVTGKIGTDI 228 (255)
Q Consensus 155 t~~~y~~i~~~KTa~Ltf~~~~~lga~la---g~~~~~~~~~l~~~g~-~iGiaFQI~DD~lD~~g--d~~~~GK~g~Di 228 (255)
+.+.|.+..|-+|-.. -..|+.+|+.++ +..+... -.+--++. -+-.+-.+.|||.|+.. |....-+...=+
T Consensus 2 ~~~~~~~~~Rp~~~~~-~~~p~l~G~~~a~~~~~~~~~~-~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l 79 (293)
T PRK06080 2 TFKAWLELARPKTLPA-AFAPVLVGTALAYWLGSFHPLL-ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAI 79 (293)
T ss_pred CHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccc
Confidence 4577999999999877 667888888776 2211111 11111121 11234478999999953 322111112335
Q ss_pred hcCCchHHHH
Q psy9101 229 EDGKCSWLAV 238 (255)
Q Consensus 229 ~~gK~T~p~i 238 (255)
.+|+.|..-+
T Consensus 80 ~~G~is~~~~ 89 (293)
T PRK06080 80 GRGGISPKQV 89 (293)
T ss_pred cCCCCCHHHH
Confidence 6677766543
No 32
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=35.11 E-value=76 Score=28.35 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhC
Q psy9101 200 EMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 200 ~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a 244 (255)
-+-...++..|+.|..+ |.+.|+.|+|+.++.+++
T Consensus 172 l~~~~~~~~~d~~D~e~----------D~~~G~~Tlpv~lG~~~t 206 (285)
T PRK12872 172 LKSFIREIVFDIKDIEG----------DRKSGLKTLPIVLGKERT 206 (285)
T ss_pred HHHHHHHHHHhcccchh----------HHHcCCcccchhcchHHH
Confidence 34567889999999754 678999999999998654
No 33
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=34.62 E-value=98 Score=26.47 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy9101 172 FQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214 (255)
Q Consensus 172 f~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~ 214 (255)
+.+.+.+.+.+.|. +.+..-.+...-+.+=.+.-+.||+.|=
T Consensus 2 r~~~~~~~~~~~~~-~~~~~~~~a~ave~l~~~~li~DDI~D~ 43 (236)
T cd00867 2 RPLLVLLLARALGG-DLEAALRLAAAVELLHAASLVHDDIVDD 43 (236)
T ss_pred cHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 34445555555565 5566667777788888899999999993
No 34
>PRK10581 geranyltranstransferase; Provisional
Probab=34.55 E-value=70 Score=29.35 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=30.3
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 180 MHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 180 a~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
+.+.|. +.+..-.+...-+-+=.+.-|.||+ +| . +|++.|++|+-..+
T Consensus 56 ~~~~g~-~~~~~~~~A~avEliH~aSLiHDDip~~D--~---------s~~RRG~pt~h~~~ 105 (299)
T PRK10581 56 GQMFGV-STNTLDAPAAAVECIHAYSLIHDDLPAMD--D---------DDLRRGLPTCHVKF 105 (299)
T ss_pred HHHhCC-CHHHHHHHHHHHHHHHHHHHHHcCccccc--C---------CCccCCCcChHHHh
Confidence 344454 4455555666667777889999999 88 2 45555665554443
No 35
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=32.94 E-value=2e+02 Score=25.70 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=54.3
Q ss_pred HhhcccchhcccCCCCCCCCHHHHHHHHhccc-cchhHHHHHHHHHHHhCC-CCHHHH--HHHHHHHHHHHHHHHHHhhh
Q psy9101 136 KTSMGQSLDLSTANDLSKFTMDRYEAIVKYKT-AFYSFQLPVALAMHMAGM-QDVEVH--RQARTLLLEMGHFFQVQDDY 211 (255)
Q Consensus 136 ~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KT-a~Ltf~~~~~lga~lag~-~~~~~~--~~l~~~g~~iGiaFQI~DD~ 211 (255)
..+.|+..+..+...-..+|.++|.++ +..| |.. + .+.++-...|. -++... ..++++-...+...-+.||+
T Consensus 140 ~~~~a~~~e~~~~~~~~~psl~eYl~~-R~~~~g~~-~--~~~l~~~~~g~~lp~~~~~~~~~~~l~~~~~~~~~l~NDl 215 (303)
T cd00687 140 DYFDAYIWEGKNRLNGHVPDVAEYLEM-RRFNIGAD-P--CLGLSEFIGGPEVPAAVRLDPVMRALEALASDAIALVNDI 215 (303)
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHH-hhhccccc-c--cHHHHHHhcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 344555555444322223789999976 4555 444 2 23333344442 133332 34788888999999999999
Q ss_pred hccCCCCCccCCccchH-hcCC-chHHHHHHHh
Q psy9101 212 LDCFGTPDVTGKIGTDI-EDGK-CSWLAVVALQ 242 (255)
Q Consensus 212 lD~~gd~~~~GK~g~Di-~~gK-~T~p~i~al~ 242 (255)
..|-. ++ ..|. .|++.++.-+
T Consensus 216 ~S~~K----------E~~~~g~~~N~V~vl~~~ 238 (303)
T cd00687 216 YSYEK----------EIKANGEVHNLVKVLAEE 238 (303)
T ss_pred HhhHH----------HHHhCCccchHHHHHHHH
Confidence 99853 22 3344 6777766554
No 36
>PLN00012 chlorophyll synthetase; Provisional
Probab=28.99 E-value=70 Score=30.49 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhC
Q psy9101 200 EMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 200 ~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a 244 (255)
-+++++-+.+|+.|.. .|.+.|+.|+|+.++.+.+
T Consensus 263 l~~lai~ivnd~~Die----------~Dr~aG~~TLpV~~G~~~a 297 (375)
T PLN00012 263 IAGLGIAIVNDFKSIE----------GDRALGLQSLPVAFGVETA 297 (375)
T ss_pred HHHHHHHHHhhhcchh----------hHHHcCCcccceeechHHH
Confidence 4678889999999875 4788999999999987643
No 37
>PF10244 MRP-L51: Mitochondrial ribosomal subunit; InterPro: IPR019373 MRP-L51 is a family of small proteins from the intact 55 S mitochondrial ribosome []. It has otherwise been referred to as bMRP-64 []. The exact function of this family is not known.
Probab=28.84 E-value=27 Score=26.82 Aligned_cols=24 Identities=50% Similarity=0.894 Sum_probs=19.8
Q ss_pred HhhhhccCCCCCccCC-ccchHhcCCchHH
Q psy9101 208 QDDYLDCFGTPDVTGK-IGTDIEDGKCSWL 236 (255)
Q Consensus 208 ~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p 236 (255)
++|++|+.|| |+ .-.|+.-| ++|+
T Consensus 19 qnDyIdILGd----~~~hP~~l~~~-P~Wl 43 (94)
T PF10244_consen 19 QNDYIDILGD----GKLHPKDLIYG-PSWL 43 (94)
T ss_pred CcccccccCC----CCcCHHHHhcC-cHHH
Confidence 5899999998 67 56888888 7775
No 38
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=26.68 E-value=99 Score=28.64 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 191 HRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 191 ~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
...+...-+-+=.+.-|.||++|- +|++.|++|+-..++
T Consensus 69 ~~~~A~avEliH~asLiHDDiiD~-----------s~~RRG~pt~h~~~G 107 (322)
T TIGR02749 69 HRRLAEITEMIHTASLVHDDVIDE-----------SDTRRGIETVHSLFG 107 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcccccC-----------ccccCCCccHHHHhC
Confidence 334555667777888999999882 456667666655543
No 39
>KOG0018|consensus
Probab=25.02 E-value=56 Score=35.30 Aligned_cols=26 Identities=19% Similarity=0.407 Sum_probs=18.1
Q ss_pred hcchhhHHHHhhccc-CCCCccchHHHH
Q psy9101 77 YLGTYFIVQVLQYNV-PSGKKNRGLALV 103 (255)
Q Consensus 77 ~~~~~~i~~a~~y~~-~gGKr~Rpll~l 103 (255)
+...|++.-+ .|++ ++|||+||+=.+
T Consensus 1026 n~~EPyl~GI-ky~~~pP~KRFr~m~~L 1052 (1141)
T KOG0018|consen 1026 NPEEPYLDGI-KYHCMPPGKRFRPMDNL 1052 (1141)
T ss_pred CCCcchhcCc-cccccCCccccCchhhc
Confidence 3445666655 5655 999999998554
No 40
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=23.67 E-value=2.4e+02 Score=25.11 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhC
Q psy9101 202 GHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 202 GiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a 244 (255)
-.++-+..|+.|.. .|.+.|..|+|+.++.+++
T Consensus 170 ~~~~~~~~~~~D~e----------~D~~~G~~tlpv~~G~~~t 202 (276)
T PRK12882 170 TLAREIIKDVEDIE----------GDRAEGARTLPILIGVRKA 202 (276)
T ss_pred HHHHHHHhhhhhhh----------hHHHcCCccccHHhhHHHH
Confidence 45667777888864 4778999999999998653
No 41
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=22.81 E-value=2.3e+02 Score=25.48 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhh
Q psy9101 172 FQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQR 243 (255)
Q Consensus 172 f~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~ 243 (255)
+..+...|+...+.......--+--+..-..++|.+..|+.|..+ |-+.|..|.|+.++.+.
T Consensus 150 ~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~----------D~~~G~~s~~~~~G~~~ 211 (289)
T COG0382 150 FGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEG----------DRKAGLKSLPVLFGIKK 211 (289)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccc----------hHhcCCcchHHHhCchh
Confidence 666667777666531233444566667778889999999999865 45678888888887654
No 42
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=22.63 E-value=2.4e+02 Score=23.31 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=53.5
Q ss_pred ccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHH
Q psy9101 165 YKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVAL 241 (255)
Q Consensus 165 ~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al 241 (255)
.|..++++++++.+...+.+. +......++++|.++|+.|=..-=+.- -.+|| ...|+.+.-.||+-+.|+
T Consensus 13 ~kn~~i~iAa~vLL~lk~~~l-~~~~~p~le~~Gl~~GiiiLtiaiLvP-----iAtGki~~~~l~~~f~s~~g~~Ai 84 (140)
T PF04284_consen 13 GKNNSIAIAACVLLILKLLPL-DQYIFPFLEKKGLNWGIIILTIAILVP-----IATGKIGFKDLLNSFKSWKGIIAI 84 (140)
T ss_pred hccHHHHHHHHHHHHHHHhcc-hhhhhHHHHHhChhHhHHHHHHHHHcc-----ccCCCcCHHHHHHHHhCHHHHHHH
Confidence 355556577777777888886 444478999999999999876654443 45689 789998888899888776
No 43
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=21.88 E-value=1.7e+02 Score=26.77 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhC
Q psy9101 201 MGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 201 iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a 244 (255)
+..++-+.+|+.|+. .|.+.|+.|+|+.++.+.+
T Consensus 195 ~~~~i~~~n~~~D~e----------~D~~~G~~Tlpv~lG~~~a 228 (306)
T TIGR02056 195 AGLGIAIVNDFKSVE----------GDRALGLQSLPVAFGIETA 228 (306)
T ss_pred HHHHHHHHHHccChH----------HHHHcCCcCcchhcChHHH
Confidence 445566899999974 5789999999999987653
No 44
>PF09053 CagZ: CagZ; InterPro: IPR015139 Helicobacter pylori (Campylobacter pylori) clinical isolates can be classified into two types according to their degree of pathogenicity. Type I strains are associated with a severe disease pathology, express functional VacA (vacuolating cytotoxin A) and contain an insertion of 40 kb of foreign DNA: the cag (cytotoxin-associated gene) pathogenicity island (cagPAI). Type II strains lack the 40 kb insert, cagPAI. The cagPAI may be divided into two regions, cag I and cag II and contain approximately 16 and 15 genes, respectively. The cagPAI encodes a type IV secretion system (T4SS), which delivers CagA into the cytosol of gastric epithelial cells through a rigid needle structure covered by Cag7 or CagY, a VirB10-homologous protein, and CagT, a VirB7-homologous protein, at the base []. The CagA protein is the virulence factor that induces morphological changes in host cells, which may be associated with the development of peptic ulcer and gastric carcinoma []. CagZ is a 23 kDa protein consisting of a single compact L-shaped domain, composed of seven alpha-helices that run antiparallel to each other. 70% of the residues are in alpha-helix conformation and no beta-sheet is present. CagZ is essential for the translocation of the pathogenic protein CagA into host cells []. ; PDB: 1S2X_A.
Probab=21.30 E-value=70 Score=26.32 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=10.9
Q ss_pred HHHHHHHHHH--Hhhh
Q psy9101 198 LLEMGHFFQV--QDDY 211 (255)
Q Consensus 198 g~~iGiaFQI--~DD~ 211 (255)
|..+|+|||| +||+
T Consensus 142 gnmmgvafqilgiddf 157 (199)
T PF09053_consen 142 GNMMGVAFQILGIDDF 157 (199)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred CccceeeeeeecchhH
Confidence 6779999999 4554
No 45
>CHL00151 preA prenyl transferase; Reviewed
Probab=21.06 E-value=1.7e+02 Score=27.02 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 193 QARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 193 ~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
.+...-+-+=.+.-|.||+.| ++|.+.|++|+-..++
T Consensus 72 ~~A~aiEllH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G 108 (323)
T CHL00151 72 RLAEITEIIHTASLVHDDVID-----------ECSIRRGIPTVHKIFG 108 (323)
T ss_pred HHHHHHHHHHHHHHHHccccc-----------CccccCCCccHHHHhC
Confidence 345556666778899999988 2455666666554443
Done!