Query psy9101
Match_columns 255
No_of_seqs 250 out of 1872
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 18:57:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uby_A FPS, farnesyl diphospha 100.0 1.5E-43 5.2E-48 330.4 19.9 210 23-254 19-302 (367)
2 2ihi_A Pyrophosphate synthase; 100.0 7.7E-44 2.6E-48 335.0 14.3 211 21-254 22-331 (395)
3 2qis_A Farnesyl pyrophosphate 100.0 7.1E-43 2.4E-47 326.6 18.3 203 30-254 33-309 (374)
4 3dyh_A Farnesyl pyrophosphate 100.0 7.6E-43 2.6E-47 327.9 15.1 211 23-255 17-324 (390)
5 3mav_A Farnesyl pyrophosphate 100.0 1.2E-42 4.1E-47 327.1 16.4 203 30-254 31-331 (395)
6 1yhl_A Farnesyl pyrophosphate 100.0 1.5E-41 5.1E-46 316.3 14.7 203 30-254 2-295 (362)
7 2her_A Fragment, farnesyl pyro 100.0 5.3E-42 1.8E-46 319.7 6.7 197 29-254 22-295 (368)
8 2q58_A Fragment, farnesyl pyro 100.0 1.8E-41 6.1E-46 316.5 8.3 196 31-255 24-296 (368)
9 3oyr_A Trans-isoprenyl diphosp 100.0 4.8E-40 1.6E-44 304.4 17.0 186 59-254 28-278 (345)
10 3mzv_A Decaprenyl diphosphate 100.0 6.4E-40 2.2E-44 303.2 17.1 178 67-254 24-266 (341)
11 4dhd_A Polyprenyl synthetase; 100.0 5.2E-39 1.8E-43 298.8 18.4 179 67-254 16-272 (358)
12 3pde_A Farnesyl-diphosphate sy 100.0 8.6E-40 3E-44 298.5 12.7 166 80-254 33-271 (309)
13 1wy0_A Geranylgeranyl pyrophos 100.0 1.7E-39 5.9E-44 300.3 14.8 178 67-254 17-264 (342)
14 3rmg_A Octaprenyl-diphosphate 100.0 5.1E-39 1.7E-43 296.5 16.2 177 67-254 19-259 (334)
15 3aqb_B Component B of hexapren 100.0 2.5E-39 8.6E-44 297.4 14.0 177 67-253 16-256 (325)
16 3pko_A Geranylgeranyl pyrophos 100.0 2.2E-39 7.6E-44 298.9 13.6 176 68-252 28-268 (334)
17 3nf2_A Putative polyprenyl syn 100.0 6.7E-39 2.3E-43 297.5 16.1 174 67-250 15-266 (352)
18 4f62_A Geranyltranstransferase 100.0 1.2E-38 4.1E-43 291.9 16.7 176 67-253 15-267 (317)
19 1wmw_A Geranylgeranyl diphosph 100.0 1E-38 3.4E-43 293.9 16.0 176 68-254 12-257 (330)
20 3lmd_A Geranylgeranyl pyrophos 100.0 2.1E-38 7.2E-43 294.8 17.0 184 57-252 35-283 (360)
21 3uca_A Geranyltranstransferase 100.0 6E-39 2.1E-43 294.6 12.5 177 67-253 43-296 (324)
22 3p8l_A Geranyltranstransferase 100.0 1.1E-38 3.7E-43 290.6 13.7 174 70-253 23-271 (302)
23 3lsn_A Geranyltranstransferase 100.0 9.2E-39 3.1E-43 291.3 12.0 178 67-254 13-269 (304)
24 3ts7_A Geranyltranstransferase 100.0 1.8E-38 6.2E-43 291.5 13.5 177 67-254 19-275 (324)
25 3m0g_A Farnesyl diphosphate sy 100.0 3.9E-38 1.3E-42 286.3 12.3 175 68-254 14-262 (297)
26 3llw_A Geranyltranstransferase 100.0 5.5E-38 1.9E-42 286.9 12.8 170 79-254 32-274 (311)
27 3p8r_A Geranyltranstransferase 100.0 2.4E-38 8.3E-43 288.3 10.4 176 67-253 19-274 (302)
28 3lom_A Geranyltranstransferase 100.0 9.5E-38 3.2E-42 285.6 13.8 164 80-254 35-276 (313)
29 1v4e_A Octoprenyl-diphosphate 100.0 1.8E-37 6.1E-42 282.2 15.1 166 68-252 16-246 (299)
30 1rtr_A Geranyltranstransferase 100.0 5.2E-38 1.8E-42 286.0 10.9 174 69-253 14-263 (301)
31 2h8o_A Geranyltranstransferase 100.0 1.5E-37 5.1E-42 286.7 13.8 176 67-253 49-307 (335)
32 3apz_A Geranyl diphosphate syn 100.0 5.8E-38 2E-42 290.7 10.8 183 67-253 20-278 (348)
33 1rqj_A Geranyltranstransferase 100.0 1.1E-37 3.7E-42 283.6 11.7 175 68-253 14-268 (299)
34 3lk5_A Geranylgeranyl pyrophos 100.0 5.8E-37 2E-41 287.0 16.6 164 88-254 56-306 (380)
35 3tc1_A Octaprenyl pyrophosphat 100.0 1.6E-36 5.6E-41 277.7 17.5 156 88-254 28-246 (315)
36 3npk_A Geranyltranstransferase 100.0 3E-37 1E-41 279.7 12.2 165 78-254 22-259 (291)
37 2e8v_A Geranylgeranyl pyrophos 100.0 4.7E-37 1.6E-41 283.9 11.2 168 69-246 11-252 (340)
38 2q80_A Geranylgeranyl pyrophos 100.0 1.2E-36 4.2E-41 276.9 7.7 159 73-244 3-225 (301)
39 2ftz_A Geranyltranstransferase 100.0 8E-36 2.7E-40 269.6 10.5 160 79-252 30-255 (284)
40 3ipi_A Geranyltranstransferase 100.0 2.9E-34 9.9E-39 260.6 10.3 148 80-243 27-236 (295)
41 2j1p_A Geranylgeranyl pyrophos 100.0 1.8E-31 6E-36 242.1 13.0 164 67-252 23-263 (293)
42 2azj_A Geranylgeranyl pyrophos 100.0 9.3E-31 3.2E-35 237.0 11.1 149 67-239 21-232 (289)
43 4fp4_A Polyprenyl synthetase; 100.0 1.9E-30 6.4E-35 234.3 6.6 148 67-231 16-226 (285)
44 3qkc_B Geranyl diphosphate syn 99.9 8.1E-26 2.8E-30 203.1 11.9 134 68-213 17-224 (273)
45 3kra_B Geranyl diphosphate syn 99.9 1.3E-25 4.3E-30 201.9 12.5 133 68-211 12-221 (274)
46 3acx_A Dehydrosqualene synthas 88.8 6.5 0.00022 34.4 12.5 82 135-237 111-192 (293)
47 4hd1_A Squalene synthase HPNC; 80.7 2.4 8.1E-05 37.4 5.7 81 135-237 107-187 (294)
48 3vj8_A Squalene synthase; farn 77.4 4.3 0.00015 36.7 6.4 86 135-237 121-206 (343)
49 3rmg_A Octaprenyl-diphosphate 56.2 17 0.00057 32.6 5.7 55 176-242 55-109 (334)
50 3mzv_A Decaprenyl diphosphate 42.9 16 0.00054 32.9 3.3 53 175-239 60-112 (341)
51 2q80_A Geranylgeranyl pyrophos 40.9 28 0.00094 30.7 4.5 49 180-240 37-85 (301)
52 2azj_A Geranylgeranyl pyrophos 40.4 31 0.001 30.3 4.7 54 176-241 57-110 (289)
53 1wmw_A Geranylgeranyl diphosph 35.7 29 0.00098 30.9 3.8 37 176-213 47-83 (330)
54 3bny_A Aristolochene synthase; 35.5 1.2E+02 0.004 26.0 7.8 61 153-216 165-226 (320)
55 2e8v_A Geranylgeranyl pyrophos 34.1 35 0.0012 30.5 4.1 33 180-213 52-84 (340)
56 1di1_A Aristolochene synthase; 32.8 2.2E+02 0.0075 23.9 9.0 87 153-243 151-238 (300)
57 3lmd_A Geranylgeranyl pyrophos 32.8 31 0.0011 31.3 3.5 53 177-241 83-136 (360)
58 1wy0_A Geranylgeranyl pyrophos 32.5 22 0.00074 31.8 2.4 49 180-240 58-106 (342)
59 3nf2_A Putative polyprenyl syn 32.4 27 0.00094 31.5 3.1 52 176-239 62-113 (352)
60 4dhd_A Polyprenyl synthetase; 31.9 22 0.00075 32.2 2.4 52 177-240 54-105 (358)
61 3pko_A Geranylgeranyl pyrophos 31.5 34 0.0012 30.6 3.6 51 178-240 65-116 (334)
62 2ftz_A Geranyltranstransferase 29.9 54 0.0018 28.6 4.5 52 177-240 55-108 (284)
63 3ipi_A Geranyltranstransferase 29.2 22 0.00076 31.3 1.9 25 189-213 62-86 (295)
64 3m0g_A Farnesyl diphosphate sy 29.1 45 0.0015 29.3 3.9 50 176-237 49-100 (297)
65 3aqb_B Component B of hexapren 28.6 26 0.0009 31.1 2.2 52 176-239 52-103 (325)
66 3lom_A Geranyltranstransferase 27.0 51 0.0017 29.2 3.9 48 178-237 60-109 (313)
67 3lk5_A Geranylgeranyl pyrophos 26.9 67 0.0023 29.2 4.7 41 188-239 87-127 (380)
68 1rqj_A Geranyltranstransferase 26.5 67 0.0023 28.1 4.5 53 176-240 52-106 (299)
69 3oyr_A Trans-isoprenyl diphosp 26.1 32 0.0011 30.9 2.4 37 176-213 73-109 (345)
70 3p8l_A Geranyltranstransferase 26.0 41 0.0014 29.7 3.0 53 177-240 59-113 (302)
71 3p8r_A Geranyltranstransferase 25.8 41 0.0014 29.7 3.0 52 176-239 58-111 (302)
72 2j1p_A Geranylgeranyl pyrophos 25.4 73 0.0025 27.7 4.6 50 178-239 62-113 (293)
73 4f62_A Geranyltranstransferase 25.2 58 0.002 29.0 3.9 50 178-239 55-106 (317)
74 1v4e_A Octoprenyl-diphosphate 25.1 58 0.002 28.5 3.9 40 190-240 62-101 (299)
75 3uca_A Geranyltranstransferase 24.8 41 0.0014 30.0 2.8 52 176-239 82-135 (324)
76 1ps1_A Pentalenene synthase; a 24.7 3.3E+02 0.011 23.3 8.8 94 137-243 146-244 (337)
77 3kb9_A EPI-isozizaene synthase 24.1 1.9E+02 0.0064 25.8 7.2 93 137-242 189-285 (382)
78 3pde_A Farnesyl-diphosphate sy 22.9 51 0.0017 29.2 3.0 38 192-240 73-112 (309)
79 4fp4_A Polyprenyl synthetase; 21.9 1.3E+02 0.0043 26.4 5.4 41 189-240 68-108 (285)
80 3llw_A Geranyltranstransferase 21.5 61 0.0021 28.7 3.2 39 189-238 74-114 (311)
81 3lsn_A Geranyltranstransferase 21.5 53 0.0018 29.0 2.8 51 176-238 52-104 (304)
82 1rtr_A Geranyltranstransferase 21.4 58 0.002 28.5 3.1 51 177-239 51-103 (301)
83 1s2x_A CAG-Z; CAG pathogenicit 21.3 45 0.0015 26.4 2.0 14 198-211 149-164 (206)
84 2h8o_A Geranyltranstransferase 20.4 81 0.0028 28.2 3.9 36 177-213 94-131 (335)
No 1
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.5e-43 Score=330.35 Aligned_cols=210 Identities=53% Similarity=0.901 Sum_probs=182.5
Q ss_pred hhhhchHHHHHHHHHHhhHHHHHHHhccCCCCCc-hHHHHHHHHHhHHHHHHhhhhcchhhHHHHhhcccCCCCccchHH
Q psy9101 23 TNTVLSKDESRDFMAIFPDLVRDLTDAGRHSDIP-DVTKWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPSGKKNRGLA 101 (255)
Q Consensus 23 ~~~~~~~~~~~~f~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~i~~a~~y~~~gGKr~Rpll 101 (255)
..++..++++++|+++|+.+++++.+...+.+.+ +...|+.+++ +|+++||||+||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~---------------------~y~~~gGKrlRp~l 77 (367)
T 1uby_A 19 LSPVVVEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVL---------------------QYNAPGGKCNRGLT 77 (367)
T ss_dssp -CHHHHHHHHHHHHHTHHHHHHHHHTTTSSCTTTHHHHHHHHHHH---------------------HHHSSSSCCHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHH---------------------hhhcCCCcchhHHH
Confidence 3345567889999999999999999987544444 6777888888 99999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------------------------------------------
Q psy9101 102 LVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------------------------------------ 133 (255)
Q Consensus 102 ~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------------------------------------ 133 (255)
++++++++++...++++.++.+..+|||+||+
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l 157 (367)
T 1uby_A 78 VVAAYRELSGPGQKDAESLRCALAVGWCIELFQAASLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVL 157 (367)
T ss_dssp HHHHHHHHCCGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccCChhhHHHHHHHHHHHHHHHHHHHHhCcccCCCCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 99999998752112355455678899999999
Q ss_pred --------------------HHHhhcccchhcccCCC----CCCCCHHHHHHHHhccccchhHHHHHHHHHHHhC-CCCH
Q psy9101 134 --------------------SLKTSMGQSLDLSTAND----LSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAG-MQDV 188 (255)
Q Consensus 134 --------------------~~~~~~GQ~lDl~~~~~----~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag-~~~~ 188 (255)
...++.||.+|+.+..+ +..+++++|.+|+++|||+|||++||.+|++++| + ++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~-~~ 236 (367)
T 1uby_A 158 KKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGID-SK 236 (367)
T ss_dssp HHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCC-CH
T ss_pred HHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCc-cH
Confidence 45679999999988642 2258999999999999999999999999999999 7 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhCCHHHHHHHHh
Q psy9101 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 189 ~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a~~~~r~~l~~ 254 (255)
+..+.+++||.++|+||||+|||+|++||++++||.|+|+++||+|||+++|++.+++++|+.|++
T Consensus 237 ~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~ 302 (367)
T 1uby_A 237 EEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLED 302 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCchhhHHcCCchHHHHHHHHhCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999988764
No 2
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=7.7e-44 Score=335.03 Aligned_cols=211 Identities=29% Similarity=0.571 Sum_probs=165.9
Q ss_pred chhhhhchHHHHHHHHHHhhHHHHHHHhccCCCCCc-hHH----HHHHHHHhHHHHHHhhhhcchhhHHHHhhcccCCCC
Q psy9101 21 AATNTVLSKDESRDFMAIFPDLVRDLTDAGRHSDIP-DVT----KWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPSGK 95 (255)
Q Consensus 21 ~~~~~~~~~~~~~~f~~~~~~l~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~l~~~~~~~~~~i~~a~~y~~~gGK 95 (255)
-..|...+...+++|+++|+++++++.+.+....+| +.. +|+++++ +|+++|||
T Consensus 22 ~~~~~~~~~~~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---------------------~Y~~~GGK 80 (395)
T 2ihi_A 22 KETNSEEADSGLAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLF---------------------DYNCLGGK 80 (395)
T ss_dssp -------------CTTTTHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH---------------------HHHHSSSC
T ss_pred hhccCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCChhhhhhHHHHHHHHH---------------------HhhccCcc
Confidence 345666777899999999999999999998777787 555 7888888 99999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------------------------------------
Q psy9101 96 KNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------------------------------ 133 (255)
Q Consensus 96 r~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------------------------------ 133 (255)
|+||++++++++++++. ..+++..+.+..+|||+||+
T Consensus 81 rlRp~Lvl~~~~~~g~~-~~~~~~~~~a~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~ 159 (395)
T 2ihi_A 81 NNRGILVILIYEYVKNR-DINSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLY 159 (395)
T ss_dssp CHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHH
Confidence 99999999999999753 23556677888999999999
Q ss_pred ---------------------------HHHhhcccchhcc-c-----------------C---C--CCCCCCHHHHHHHH
Q psy9101 134 ---------------------------SLKTSMGQSLDLS-T-----------------A---N--DLSKFTMDRYEAIV 163 (255)
Q Consensus 134 ---------------------------~~~~~~GQ~lDl~-~-----------------~---~--~~~~~t~~~y~~i~ 163 (255)
...++.||.+|+. | . . +++.++++.|.+|+
T Consensus 160 ~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~ 239 (395)
T 2ihi_A 160 NSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIV 239 (395)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHH
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHH
Confidence 4568999999992 2 1 1 11247999999999
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHH
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEV--HRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVAL 241 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~--~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al 241 (255)
++|||+|||++||++|++++|+ +++. .+.+.+||.++|+||||+|||+|++|+++.+||+|+|+++||+|||+++|+
T Consensus 240 ~~KTa~Ls~~~~~~~ga~lag~-~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al 318 (395)
T 2ihi_A 240 IHKTAYYSFFLPIVCGMLLAGI-AVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTF 318 (395)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTC-CTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHcCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHH
Confidence 9999999999999999999998 6666 899999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHh
Q psy9101 242 QRATPAQRKLMEV 254 (255)
Q Consensus 242 ~~a~~~~r~~l~~ 254 (255)
+.+++++|+.|++
T Consensus 319 ~~~~~~~~~~L~~ 331 (395)
T 2ihi_A 319 ELCSEPDKIKIVK 331 (395)
T ss_dssp HHCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 9999999998865
No 3
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=7.1e-43 Score=326.59 Aligned_cols=203 Identities=51% Similarity=0.853 Sum_probs=176.5
Q ss_pred HHHHHHHHHhhHHHHHHHhccCCCCC-chHHHHHHHHHhHHHHHHhhhhcchhhHHHHhhcccCCCCccchHHHHHHHHH
Q psy9101 30 DESRDFMAIFPDLVRDLTDAGRHSDI-PDVTKWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPSGKKNRGLALVVAYKM 108 (255)
Q Consensus 30 ~~~~~f~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~i~~a~~y~~~gGKr~Rpll~lla~~~ 108 (255)
+++++|+++|+.+++++.+...+... ++...|+.+++ +|+++||||+||+++++++++
T Consensus 33 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~---------------------~y~~~gGKrlRp~l~l~~~~~ 91 (374)
T 2qis_A 33 QEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVL---------------------EYNAIGGKYNRGLTVVVAFRE 91 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHH---------------------HHHSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHH---------------------HhhcCCCcchHHHHHHHHHHH
Confidence 67999999999999999987743333 35566777777 898899999999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHH-------------------------------------------------------
Q psy9101 109 LAQPSELTPENLHLAQILGWCVEIV------------------------------------------------------- 133 (255)
Q Consensus 109 l~~~~~~~~~~~~~a~~lA~avEll------------------------------------------------------- 133 (255)
++++...+++.++.+..+|||+||+
T Consensus 92 ~~~~~~~~~~~~~~a~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~ 171 (374)
T 2qis_A 92 LVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQ 171 (374)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hCCCCccchHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8763212355566788999999999
Q ss_pred -------------HHHhhcccchhcccCCC--C--CCCCHHHHHHHHhccccchhHHHHHHHHHHHhC-CCCHHHHHHHH
Q psy9101 134 -------------SLKTSMGQSLDLSTAND--L--SKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAG-MQDVEVHRQAR 195 (255)
Q Consensus 134 -------------~~~~~~GQ~lDl~~~~~--~--~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag-~~~~~~~~~l~ 195 (255)
...++.||.+|+.+..+ . ..+++++|.+|+++|||+|||++||.+|++++| + +++..+.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a-~~~~~~~l~ 250 (374)
T 2qis_A 172 PYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGID-GEKEHANAK 250 (374)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCC-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 45679999999988653 1 137999999999999999999999999999999 7 888999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhCCHHHHHHHHh
Q psy9101 196 TLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 196 ~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a~~~~r~~l~~ 254 (255)
+||.++|+||||+|||+|++||++++||+|+|+++||+|||+++|++.+++++++.|++
T Consensus 251 ~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~ 309 (374)
T 2qis_A 251 KILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKE 309 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988764
No 4
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=7.6e-43 Score=327.90 Aligned_cols=211 Identities=33% Similarity=0.590 Sum_probs=175.6
Q ss_pred hhhhchHHHHHHHHHHhhHHHHHHHhccC-CCCCc-hHHHHHHHHHhHHHHHHhhhhcchhhHHHHhhcccCCCCccchH
Q psy9101 23 TNTVLSKDESRDFMAIFPDLVRDLTDAGR-HSDIP-DVTKWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPSGKKNRGL 100 (255)
Q Consensus 23 ~~~~~~~~~~~~f~~~~~~l~~~l~~~~~-~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~i~~a~~y~~~gGKr~Rpl 100 (255)
+..-.....+++|+++|+.+.+.|.+.+. ..+++ +...|+.+++ +|+++||||+||+
T Consensus 17 ~~~~~~~~~~~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m---------------------~Y~~~GGKr~Rp~ 75 (390)
T 3dyh_A 17 RGSHMASMPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMM---------------------DTTCLGGKYNRGL 75 (390)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH---------------------HHHHSSSCCHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHH---------------------HhhcCCccchhHH
Confidence 33344566799999999999999998764 24554 6788999888 9999999999999
Q ss_pred HHHHHHHHhcCCC---------CCC-HHHHHHHHHHHHHHHHH-------------------------------------
Q psy9101 101 ALVVAYKMLAQPS---------ELT-PENLHLAQILGWCVEIV------------------------------------- 133 (255)
Q Consensus 101 l~lla~~~l~~~~---------~~~-~~~~~~a~~lA~avEll------------------------------------- 133 (255)
+++++++++++.. ..+ ++.+..|..+||||||+
T Consensus 76 l~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD 155 (390)
T 3dyh_A 76 TVIDVAESLLSLSPNNNGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAIND 155 (390)
T ss_dssp HHHHHHHHTSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHH
T ss_pred HHHHHHHHhCCccccccccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHH
Confidence 9999999987410 011 23466777888999999
Q ss_pred --------------------------------HHHhhcccchhcccC-----------C----CCCCCCHHHHHHHHhcc
Q psy9101 134 --------------------------------SLKTSMGQSLDLSTA-----------N----DLSKFTMDRYEAIVKYK 166 (255)
Q Consensus 134 --------------------------------~~~~~~GQ~lDl~~~-----------~----~~~~~t~~~y~~i~~~K 166 (255)
...++.||.+|+.+. . +...+++++|++|+++|
T Consensus 156 ~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~K 235 (390)
T 3dyh_A 156 GLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYK 235 (390)
T ss_dssp HHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhh
Confidence 356789999999872 1 11358999999999999
Q ss_pred ccchhHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhCC
Q psy9101 167 TAFYSFQLPVALAMHMAGMQDVEV-HRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRAT 245 (255)
Q Consensus 167 Ta~Ltf~~~~~lga~lag~~~~~~-~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a~ 245 (255)
||+|||++||++|++++|+ +++. .+.+++||.++|+||||+|||+|++||++++||+|+|+++||+|||+++|++.++
T Consensus 236 Ta~L~~~~~~~~ga~laga-~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~~~~ 314 (390)
T 3dyh_A 236 TAYYTYLLPLVMGLIVSEA-LPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKAS 314 (390)
T ss_dssp THHHHTHHHHHHHHHHTTC-GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhhcCCccHHHHHHHHhCC
Confidence 9999999999999999998 5554 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q psy9101 246 PAQRKLMEVN 255 (255)
Q Consensus 246 ~~~r~~l~~n 255 (255)
+++|+.|+++
T Consensus 315 ~~~r~~L~~~ 324 (390)
T 3dyh_A 315 SAQVAEFKAN 324 (390)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 5
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1.2e-42 Score=327.09 Aligned_cols=203 Identities=29% Similarity=0.589 Sum_probs=161.3
Q ss_pred HHHHHHHHHhhHHHHHHHhccCCCCCch-----HHHHHHHHHhHHHHHHhhhhcchhhHHHHhhcccCCCCccchHHHHH
Q psy9101 30 DESRDFMAIFPDLVRDLTDAGRHSDIPD-----VTKWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPSGKKNRGLALVV 104 (255)
Q Consensus 30 ~~~~~f~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~~~l~~~~~l~~~~~~~~~~i~~a~~y~~~gGKr~Rpll~ll 104 (255)
.....|.+.|+++.+.+.+.+....+|+ ...|+..++ +|++.||||+||+++++
T Consensus 31 ~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------------------~Y~~~GGKRlRP~l~l~ 89 (395)
T 3mav_A 31 SGLAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLF---------------------DYNCLGGKNNRGILVIL 89 (395)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH---------------------HHHHSSSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH---------------------hcCCCCchhhhHHHHHH
Confidence 4455677788888777777765555552 223566666 99999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHH---------------------------------------------------
Q psy9101 105 AYKMLAQPSELTPENLHLAQILGWCVEIV--------------------------------------------------- 133 (255)
Q Consensus 105 a~~~l~~~~~~~~~~~~~a~~lA~avEll--------------------------------------------------- 133 (255)
+++++++. ..+.+..+.+..+||||||+
T Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~A~aiEliH~asLiHDDImD~s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~ 168 (395)
T 3mav_A 90 IYEYVKNR-DINSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEI 168 (395)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHhHHhcCCCCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999763 34667778889999999999
Q ss_pred ------------------HHHhhcccchhcccCC-----------------------CCCCCCHHHHHHHHhccccchhH
Q psy9101 134 ------------------SLKTSMGQSLDLSTAN-----------------------DLSKFTMDRYEAIVKYKTAFYSF 172 (255)
Q Consensus 134 ------------------~~~~~~GQ~lDl~~~~-----------------------~~~~~t~~~y~~i~~~KTa~Ltf 172 (255)
...+|.||.+|+.+.. +...+|++.|++|+++|||+|+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~ 248 (395)
T 3mav_A 169 YLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSF 248 (395)
T ss_dssp HHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHT
T ss_pred hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHH
Confidence 4568999999996532 11246899999999999999999
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhCCHHHHHH
Q psy9101 173 QLPVALAMHMAGMQ-DVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRKL 251 (255)
Q Consensus 173 ~~~~~lga~lag~~-~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a~~~~r~~ 251 (255)
++||.+|++++|+. ++...+.+++||.++|+||||+||++|++||++.+||+|+|+++||+|||+++|++.+++++|+.
T Consensus 249 ~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~~~~~r~~ 328 (395)
T 3mav_A 249 FLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIK 328 (395)
T ss_dssp HHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhCCHHHHHH
Confidence 99999999999973 23457899999999999999999999999999999999999999999999999999999999998
Q ss_pred HHh
Q psy9101 252 MEV 254 (255)
Q Consensus 252 l~~ 254 (255)
|.+
T Consensus 329 L~~ 331 (395)
T 3mav_A 329 IVK 331 (395)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 6
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=1.5e-41 Score=316.28 Aligned_cols=203 Identities=31% Similarity=0.543 Sum_probs=173.5
Q ss_pred HHHHHHHHHhhHHHHHHHhccC-C-CCCchHHHHHHHHHhHHHHHHhhhhcchhhHHHHhhcccCCCCccchHHHHHHHH
Q psy9101 30 DESRDFMAIFPDLVRDLTDAGR-H-SDIPDVTKWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPSGKKNRGLALVVAYK 107 (255)
Q Consensus 30 ~~~~~f~~~~~~l~~~l~~~~~-~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~i~~a~~y~~~gGKr~Rpll~lla~~ 107 (255)
+++++|+++|+++++++.+... . ...++...|+.+++ +|.++||||+||++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------~y~~~gGKrlRp~l~l~~~~ 60 (362)
T 1yhl_A 2 ASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMM---------------------DTTCLGGKYFRGMTVVNVAE 60 (362)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------HHHHSSSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH---------------------HhhcCCcccHHHHHHHHHHH
Confidence 4578999999999999988762 1 22345566777666 89889999999999999999
Q ss_pred HhcCCCCCCHHH----HHHHHHHHHHHHHH--------------------------------------------------
Q psy9101 108 MLAQPSELTPEN----LHLAQILGWCVEIV-------------------------------------------------- 133 (255)
Q Consensus 108 ~l~~~~~~~~~~----~~~a~~lA~avEll-------------------------------------------------- 133 (255)
++++....+++. ++.|..+|||+|++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~ 140 (362)
T 1yhl_A 61 GFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAW 140 (362)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHH
Confidence 987642223443 66777789999999
Q ss_pred -------------------HHHhhcccchhcccC-----------C--CC--CCCCHHHHHHHHhccccchhHHHHHHHH
Q psy9101 134 -------------------SLKTSMGQSLDLSTA-----------N--DL--SKFTMDRYEAIVKYKTAFYSFQLPVALA 179 (255)
Q Consensus 134 -------------------~~~~~~GQ~lDl~~~-----------~--~~--~~~t~~~y~~i~~~KTa~Ltf~~~~~lg 179 (255)
...++.||.+|+.+. . +. ..+++++|++|+++|||+|||++||++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~g 220 (362)
T 1yhl_A 141 HYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMG 220 (362)
T ss_dssp HHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 557899999999887 2 22 1479999999999999999999999999
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhCCHHHHHHHHh
Q psy9101 180 MHMAG-MQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 180 a~lag-~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a~~~~r~~l~~ 254 (255)
++++| + +++..+.+.+||.++|+||||+||++|++++++++||.|+|+++||+|||+++|++.+++++++.|++
T Consensus 221 a~lag~~-~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~ 295 (362)
T 1yhl_A 221 LFVSEAA-ASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKA 295 (362)
T ss_dssp HHHTTCG-GGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhCCHHHHHHHHH
Confidence 99999 7 67788999999999999999999999999999999999999999999999999999999999887754
No 7
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=5.3e-42 Score=319.66 Aligned_cols=197 Identities=23% Similarity=0.395 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhhHHHHHHHhccCCCCCc-hHH----HHHHHHHhHHHHHHhhhhcchhhHHHHhhcccCCCCccchHHHH
Q psy9101 29 KDESRDFMAIFPDLVRDLTDAGRHSDIP-DVT----KWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPSGKKNRGLALV 103 (255)
Q Consensus 29 ~~~~~~f~~~~~~l~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~l~~~~~~~~~~i~~a~~y~~~gGKr~Rpll~l 103 (255)
+.++++|+++|+++++++.+.+....+| +.. .|+++++ +|+++||||+||++++
T Consensus 22 ~~~~~~f~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---------------------~y~~~GGKrlRp~l~l 80 (368)
T 2her_A 22 EYDYTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCI---------------------DYNVKKGKHIRGKILV 80 (368)
T ss_dssp -CCCTTGGGTHHHHHHHHHTTCCCCTTSCCTTTTHHHHHHHHH---------------------HHHTTSSTTTTTC-CH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH---------------------HHhhCCCCccchHHHH
Confidence 4678899999999999999998777776 444 8998888 9999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHH--------------------------------------------------
Q psy9101 104 VAYKMLAQPSELTPENLHLAQILGWCVEIV-------------------------------------------------- 133 (255)
Q Consensus 104 la~~~l~~~~~~~~~~~~~a~~lA~avEll-------------------------------------------------- 133 (255)
++++++++. +++..+.+..+|||+|++
T Consensus 81 ~~~~~~g~~---~~~~~~~~~~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll 157 (368)
T 2her_A 81 LISSLSSAY---SNIKRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFEL 157 (368)
T ss_dssp HHHTTTTCC---CSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCC---CcccHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999998753 222345677889999999
Q ss_pred -------------------HHHhhcccchhcccCCCCCCCCH-HHHHHHHhccccchhHHHHHHHHHHHhCCCCHHH--H
Q psy9101 134 -------------------SLKTSMGQSLDLSTANDLSKFTM-DRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEV--H 191 (255)
Q Consensus 134 -------------------~~~~~~GQ~lDl~~~~~~~~~t~-~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~--~ 191 (255)
...++.||.+|+.+.......+. ++|++|+++|||+|||++||++|++++|+ +++. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~-~~~~~~~ 236 (368)
T 2her_A 158 SSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI-QVSSAQL 236 (368)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC-CCCCSST
T ss_pred HHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC-ChhHHHH
Confidence 34578999999988752101334 99999999999999999999999999998 6666 8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhCCHHHHHHHHh
Q psy9101 192 RQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 192 ~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a~~~~r~~l~~ 254 (255)
+.+++||.++|+||||+|||+|++ ++||+|+|+++||+|||+++|++.+++++|+.|++
T Consensus 237 ~~l~~~g~~lG~aFQI~DD~LD~~----~~GK~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~ 295 (368)
T 2her_A 237 NLIEAILYKLGEFYQVHNDVSDYL----FNDSNADDICRFKLTWPLQKSFEIADEEMKLKISE 295 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH----SCCSSSCTTTTTCCCHHHHSSTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCChHhCCcccHHHHHHHHhCCHHHHHHHHH
Confidence 899999999999999999999999 78999999999999999999999999999998875
No 8
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=1.8e-41 Score=316.50 Aligned_cols=196 Identities=25% Similarity=0.408 Sum_probs=162.5
Q ss_pred HHHHHHHHhhHHHHHHHhccCC----CCCc-hHHHHHHHHHhHHHHHHhhhhcchhhHHHHhhcccCCCCccchHHHHHH
Q psy9101 31 ESRDFMAIFPDLVRDLTDAGRH----SDIP-DVTKWYAKVLQYNKAISNNVYLGTYFIVQVLQYNVPSGKKNRGLALVVA 105 (255)
Q Consensus 31 ~~~~f~~~~~~l~~~l~~~~~~----~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~i~~a~~y~~~gGKr~Rpll~lla 105 (255)
+..+|.+.|+++...+.+.++. .+++ ++.+|+.++| +|+++||||+||++++++
T Consensus 24 ~~~df~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l---------------------~Y~~~GGKrlRp~l~~~~ 82 (368)
T 2q58_A 24 DYTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCI---------------------DYNVKKGKHIRGKILVLI 82 (368)
T ss_dssp CCTTGGGTHHHHHHHHHTTCCCCCSSCSTTCCHHHHHHHHH---------------------HHHTTCSTTTTTC-CHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH---------------------hcCCCCccchhHHHHHHH
Confidence 4567777676665555554432 3454 6889999999 999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHH----------------------------------------------------
Q psy9101 106 YKMLAQPSELTPENLHLAQILGWCVEIV---------------------------------------------------- 133 (255)
Q Consensus 106 ~~~l~~~~~~~~~~~~~a~~lA~avEll---------------------------------------------------- 133 (255)
++++++....+.+ .+..+||||||+
T Consensus 83 ~~~~~~~~~~~~e---~~~~la~aiEliH~asLiHDDimD~s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~ 159 (368)
T 2q58_A 83 SSLSSAYSNIKRD---SIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSS 159 (368)
T ss_dssp HTTTTCCCSSSHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHhCCCccCCHH---HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999865434443 456789999999
Q ss_pred -----------------HHHhhcccchhcccCCC-CCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCC-CCHHHHHHH
Q psy9101 134 -----------------SLKTSMGQSLDLSTAND-LSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGM-QDVEVHRQA 194 (255)
Q Consensus 134 -----------------~~~~~~GQ~lDl~~~~~-~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~-~~~~~~~~l 194 (255)
+..++.||.+|+.+... ..+.++++|++|+++|||+|+|++|+.+|++++|. .+++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l 239 (368)
T 2q58_A 160 VFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLI 239 (368)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTH
T ss_pred ccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHH
Confidence 45678999999987541 12468899999999999999899999999999983 155677899
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhhCCHHHHHHHHhC
Q psy9101 195 RTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRATPAQRKLMEVN 255 (255)
Q Consensus 195 ~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~a~~~~r~~l~~n 255 (255)
++||.++|+||||+||++|+++ || .|+|+++||+|||+++|++.+++++|+.|.++
T Consensus 240 ~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~ 296 (368)
T 2q58_A 240 EAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISEN 296 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999986 88 99999999999999999999999999998763
No 9
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=4.8e-40 Score=304.44 Aligned_cols=186 Identities=26% Similarity=0.349 Sum_probs=147.6
Q ss_pred HHHHHHHH-hHHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH---
Q psy9101 59 TKWYAKVL-QYNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV--- 133 (255)
Q Consensus 59 ~~~~~~~l-~~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll--- 133 (255)
..++++-+ .++..|.+.+.+.+|.+.+++.|.+ .||||+||+++++++++++++ .+ .+..+|+++|++
T Consensus 28 ~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~---~~----~~~~~A~aiEliH~a 100 (345)
T 3oyr_A 28 VRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRPLMTVAAARLAGAD---ND----HFQKLAAAVEFIHTA 100 (345)
T ss_dssp HHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCC---SS----THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC---HH----HHHHHHHHHHHHHHH
Confidence 33444333 5667888889999999999999998 999999999999999999864 22 344679999999
Q ss_pred -----------------------------------------------------------HHHhhcccchhcccCCCCCCC
Q psy9101 134 -----------------------------------------------------------SLKTSMGQSLDLSTANDLSKF 154 (255)
Q Consensus 134 -----------------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~ 154 (255)
+..++.||.+|+.+..+. .+
T Consensus 101 sLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~ 179 (345)
T 3oyr_A 101 TLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDL-NL 179 (345)
T ss_dssp HHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSCS-SC
T ss_pred HHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CC
Confidence 567899999999987654 48
Q ss_pred CHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCc
Q psy9101 155 TMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKC 233 (255)
Q Consensus 155 t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~ 233 (255)
++++|++|+++|||+| |++||++|++++|+ +++..+.+.+||.++|+||||+||++|++++++.+|| .|+|+++||+
T Consensus 180 ~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~ 257 (345)
T 3oyr_A 180 SQAVYLEIIQAKTAEL-FAAASEAGAVSAGV-DVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKA 257 (345)
T ss_dssp CHHHHHHHHHHHTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------C
T ss_pred CHHHHHHHHHcchHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCch
Confidence 9999999999999999 99999999999998 8888999999999999999999999999999999999 9999999999
Q ss_pred hHHHHHHHhhCCHHHHHHHHh
Q psy9101 234 SWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 234 T~p~i~al~~a~~~~r~~l~~ 254 (255)
|||++++++.+++++++.|.+
T Consensus 258 TlP~i~al~~~~~~~~~~l~~ 278 (345)
T 3oyr_A 258 TLPLLLAIARSGPREAEFWER 278 (345)
T ss_dssp CHHHHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999888887653
No 10
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=6.4e-40 Score=303.21 Aligned_cols=178 Identities=24% Similarity=0.272 Sum_probs=152.3
Q ss_pred hHHHHHHhhhhcc-hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-----------
Q psy9101 67 QYNKAISNNVYLG-TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV----------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~-~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll----------- 133 (255)
.++..|.+.+.+. +|.+.+++.|.+ .||||+||+++++++++++++ .+ .+..+||++|++
T Consensus 24 ~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~---~~----~~~~~A~aiEliH~asLiHDDI~ 96 (341)
T 3mzv_A 24 AVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYG---GP----FHVHLAATVEFIHTATLLHDDVV 96 (341)
T ss_dssp HHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCC---CS----HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC---HH----HHHHHHHHHHHHHHHHHHHcCcc
Confidence 4557778888887 899999999999 999999999999999999864 22 355679999999
Q ss_pred ---------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHH
Q psy9101 134 ---------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAI 162 (255)
Q Consensus 134 ---------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i 162 (255)
...++.||.+|+.+..+. ++++++|++|
T Consensus 97 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~t~~~y~~~ 175 (341)
T 3mzv_A 97 DESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNL-ATTEDIYLRV 175 (341)
T ss_dssp -----CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCT-TCCHHHHHHH
T ss_pred CCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHH
Confidence 567899999999987654 4899999999
Q ss_pred HhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHH
Q psy9101 163 VKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVAL 241 (255)
Q Consensus 163 ~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al 241 (255)
+++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||+++|+
T Consensus 176 i~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al 253 (341)
T 3mzv_A 176 IRGKTAAL-FSAATEVGGIIGGA-PEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAV 253 (341)
T ss_dssp HHHHTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHH
T ss_pred HHcchHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHH
Confidence 99999999 99999999999998 8888999999999999999999999999999999999 999999999999999999
Q ss_pred hhCCHHHHHHHHh
Q psy9101 242 QRATPAQRKLMEV 254 (255)
Q Consensus 242 ~~a~~~~r~~l~~ 254 (255)
+.+++++|+.|.+
T Consensus 254 ~~~~~~~~~~l~~ 266 (341)
T 3mzv_A 254 ALADEAERAFWKR 266 (341)
T ss_dssp HTCCHHHHHHHHH
T ss_pred HhCCHhHHHHHHH
Confidence 9999998877653
No 11
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=5.2e-39 Score=298.84 Aligned_cols=179 Identities=25% Similarity=0.307 Sum_probs=151.4
Q ss_pred hHHHHHHhhhhcc-hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-----------
Q psy9101 67 QYNKAISNNVYLG-TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV----------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~-~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll----------- 133 (255)
.+++.|.+.+.+. ++.+.+++.|.+ .||||+||+++++++++++++ .+ .+..+|+++|++
T Consensus 16 ~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~---~~----~~~~~A~aiEliH~asLiHDDI~ 88 (358)
T 4dhd_A 16 EVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQ---WR----PALPAAAIVELIHNYSLIYDDII 88 (358)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHSC---CG----GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC---HH----HHHHHHHHHHHHHHHHHHHCccc
Confidence 3456666666666 788999999998 999999999999999999864 23 345679999999
Q ss_pred ----------------------------------------------------HHHhhcccchhcccC-----------CC
Q psy9101 134 ----------------------------------------------------SLKTSMGQSLDLSTA-----------ND 150 (255)
Q Consensus 134 ----------------------------------------------------~~~~~~GQ~lDl~~~-----------~~ 150 (255)
+..++.||.+|+.+. .+
T Consensus 89 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~ 168 (358)
T 4dhd_A 89 DRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQAR 168 (358)
T ss_dssp TTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTC
T ss_pred cCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccC
Confidence 567899999999987 33
Q ss_pred CCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHh
Q psy9101 151 LSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIE 229 (255)
Q Consensus 151 ~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~ 229 (255)
...+|+++|++|+++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++||++.+|| .|+|++
T Consensus 169 ~~~~t~~~y~~~i~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~ 246 (358)
T 4dhd_A 169 WREVTLDDYIKMVSLKTGAL-IAAAAKWGVLSVSD-DRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIK 246 (358)
T ss_dssp CSCCCHHHHHHHHHHHTHHH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHH
T ss_pred CCCCCHHHHHHHHHcchHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHh
Confidence 31479999999999999999 99999999999998 8888999999999999999999999999999999999 999999
Q ss_pred cCCc-hHHHHHHHhhCCHHHHHHHHh
Q psy9101 230 DGKC-SWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 230 ~gK~-T~p~i~al~~a~~~~r~~l~~ 254 (255)
+||+ |||+++|++.+++++|+.|.+
T Consensus 247 egK~~T~p~i~al~~~~~~~~~~L~~ 272 (358)
T 4dhd_A 247 EHKRGNAVVAVALSHLGEGERRRLLE 272 (358)
T ss_dssp TTBSCSHHHHHHHHHSCHHHHHHHHH
T ss_pred cCChhhHHHHHHHHhCChhhHHHHHH
Confidence 9999 999999999999988877653
No 12
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=8.6e-40 Score=298.50 Aligned_cols=166 Identities=19% Similarity=0.227 Sum_probs=139.9
Q ss_pred hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------------------------
Q psy9101 80 TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------------- 133 (255)
Q Consensus 80 ~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------------- 133 (255)
++.+.+++.|.+ +||||+||+++++++++++++ .++. .+..+|||+|++
T Consensus 33 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~---~~~~--~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~ 107 (309)
T 3pde_A 33 DAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVT---FVPE--RHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTN 107 (309)
T ss_dssp CHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCC---CCHH--HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECH
T ss_pred cHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC---HHHH--hHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcch
Confidence 678899999999 999999999999999999864 2221 016789999999
Q ss_pred ----------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhccc
Q psy9101 134 ----------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKT 167 (255)
Q Consensus 134 ----------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KT 167 (255)
..+|+.||.+|+.+... .+|+++|.+|+++||
T Consensus 108 h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KT 185 (309)
T 3pde_A 108 HVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHV--NLPLSQLRVLHKEKT 185 (309)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHT
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCC--CCCHHHHHHHHHhcc
Confidence 14688999999998764 489999999999999
Q ss_pred cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhhCCH
Q psy9101 168 AFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRATP 246 (255)
Q Consensus 168 a~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~a~~ 246 (255)
|+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++++|| .|+|+.+||+|||++++++.+++
T Consensus 186 g~L-~~~a~~~ga~laga-~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~ 263 (309)
T 3pde_A 186 GAL-LHYAVQAGLILGQA-PEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQ 263 (309)
T ss_dssp HHH-HHHHHHHHHHHTTC-CGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHH
T ss_pred HHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHH
Confidence 999 99999999999998 7788899999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHh
Q psy9101 247 AQRKLMEV 254 (255)
Q Consensus 247 ~~r~~l~~ 254 (255)
++++.+++
T Consensus 264 ~~~~~~~~ 271 (309)
T 3pde_A 264 ALIDTIHS 271 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 13
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-39 Score=300.30 Aligned_cols=178 Identities=19% Similarity=0.236 Sum_probs=159.0
Q ss_pred hHHHHHHhhhhcc-hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-----------
Q psy9101 67 QYNKAISNNVYLG-TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV----------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~-~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll----------- 133 (255)
.++..|.+.+.+. ++.+.+++.|.+ .||||+||+++++++++++.+ ++ .+..+|||+|++
T Consensus 17 ~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~----~~---~~~~~A~avEliH~asLiHDDi~ 89 (342)
T 1wy0_A 17 LIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGD----PL---RAIYPAVAIELIHNYSLVHDDIM 89 (342)
T ss_dssp HHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSC----GG---GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCC----HH---HHHHHHHHHHHHHHHHHHHCCcc
Confidence 3556667777666 888999999988 999999999999999998753 22 345679999999
Q ss_pred --------------------------------------------------------HHHhhcccchhcccCCCCCCCCHH
Q psy9101 134 --------------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMD 157 (255)
Q Consensus 134 --------------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~ 157 (255)
+..++.||.+|+.+..+. .+|++
T Consensus 90 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~ 168 (342)
T 1wy0_A 90 DMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKS-TVTIE 168 (342)
T ss_dssp HTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHH
T ss_pred cCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHH
Confidence 567899999999987654 37999
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHH
Q psy9101 158 RYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWL 236 (255)
Q Consensus 158 ~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p 236 (255)
+|++|+++|||+| |++||.+|++++|+ +++..+.+.+||.++|+||||+|||+|++++++.+|| .|+|+++||+|||
T Consensus 169 ~y~~~i~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp 246 (342)
T 1wy0_A 169 EYMEMISGKTGAL-FEASAKVGGIIGTD-NEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLI 246 (342)
T ss_dssp HHHHHHHHHTHHH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHH
T ss_pred HHHHHHHHhhHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHH
Confidence 9999999999999 99999999999998 8888999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhCCHHHHHHHHh
Q psy9101 237 AVVALQRATPAQRKLMEV 254 (255)
Q Consensus 237 ~i~al~~a~~~~r~~l~~ 254 (255)
++++++.+++++++.|.+
T Consensus 247 ~i~al~~~~~~~~~~l~~ 264 (342)
T 1wy0_A 247 VAHFFENADEKDKQRFLK 264 (342)
T ss_dssp HHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHhCCHhHHHHHHH
Confidence 999999999998887764
No 14
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.1e-39 Score=296.46 Aligned_cols=177 Identities=23% Similarity=0.289 Sum_probs=145.6
Q ss_pred hHHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 67 QYNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
.++..+.+.+.+.++.+.+++.|.+ +||||+||+++++++++++.+ .+ .+..+|+++|++
T Consensus 19 ~v~~~l~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~---~~----~~~~~A~aiEliH~asLiHDDI~D 91 (334)
T 3rmg_A 19 DFKALFDTPLSDSNALLDSVITHIRKRNGKMMRPILVLLVARLYGAV---TP----ATLHAAVSLELLHTASLVHDDVVD 91 (334)
T ss_dssp HHHHHTC----CCCHHHHHHHHHTCC----CHHHHHHHHHHHHHSCC---CH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC---hH----HHHHHHHHHHHHHHHHHHHcCccC
Confidence 3456667778888999999999999 899999999999999999764 33 345678999999
Q ss_pred --------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHH
Q psy9101 134 --------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163 (255)
Q Consensus 134 --------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~ 163 (255)
+..++.||.+|+.+..+. .+|+++|++|+
T Consensus 92 ~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~-~~t~~~y~~~i 170 (334)
T 3rmg_A 92 ESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNH-SFSEEVYFDVI 170 (334)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHH
T ss_pred CCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHH
Confidence 567899999999987654 48999999999
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHh
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQ 242 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~ 242 (255)
++|||+| |.+||++|++++|+ +++..+.+++||.++|+||||+||++|++ +++.+|| .|+|+++||+|||+++|++
T Consensus 171 ~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al~ 247 (334)
T 3rmg_A 171 RKKTAAL-FAACAEAAALSVQV-GEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALN 247 (334)
T ss_dssp HHTHHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHHH
T ss_pred cCChHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHHH
Confidence 9999999 99999999999998 88889999999999999999999999999 5889999 9999999999999999999
Q ss_pred hCCHHHHHHHHh
Q psy9101 243 RATPAQRKLMEV 254 (255)
Q Consensus 243 ~a~~~~r~~l~~ 254 (255)
.+++++++.|.+
T Consensus 248 ~~~~~~~~~L~~ 259 (334)
T 3rmg_A 248 TTKDAWAEQIAF 259 (334)
T ss_dssp HHCCHHHHHHHH
T ss_pred hCChhhHHHHHH
Confidence 998887777653
No 15
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=2.5e-39 Score=297.40 Aligned_cols=177 Identities=16% Similarity=0.221 Sum_probs=158.5
Q ss_pred hHHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 67 QYNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
.++..|.+.+.+.+|.+.+++.|.+ +||||+||+++++++++++++ .+ .+..+|||+|++
T Consensus 16 ~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~---~~----~~~~~A~avEliH~asLiHDDi~D 88 (325)
T 3aqb_B 16 EVEKRLYECIQSDSETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQ---KD----DLIRTAVSLELVHMASLVHDDYID 88 (325)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCC---CH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC---hH----HHHHHHHHHHHHHHHHHHhCcccc
Confidence 4556677777778899999999998 999999999999999998753 23 345689999999
Q ss_pred --------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHH
Q psy9101 134 --------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163 (255)
Q Consensus 134 --------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~ 163 (255)
...++.||.+|+.+..+. .+++++|++|+
T Consensus 89 ~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i 167 (325)
T 3aqb_B 89 NSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNY-PVSFTAYLRRI 167 (325)
T ss_dssp TCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCC-CCCHHHHHHHH
T ss_pred CCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHH
Confidence 567899999999987654 48999999999
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHh
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQ 242 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~ 242 (255)
++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||+++|++
T Consensus 168 ~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~ 245 (325)
T 3aqb_B 168 NRKTAIL-IEASCHLGALSSQL-DEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIA 245 (325)
T ss_dssp HHHTHHH-HHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHH
T ss_pred HhhHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHH
Confidence 9999999 99999999999998 8889999999999999999999999999999999999 9999999999999999999
Q ss_pred hCCHHHHHHHH
Q psy9101 243 RATPAQRKLME 253 (255)
Q Consensus 243 ~a~~~~r~~l~ 253 (255)
.+++++++.|.
T Consensus 246 ~~~~~~~~~l~ 256 (325)
T 3aqb_B 246 NLKEQDDDKLE 256 (325)
T ss_dssp HHHHTTCCHHH
T ss_pred hCCHHHHHHHH
Confidence 88776666554
No 16
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=2.2e-39 Score=298.85 Aligned_cols=176 Identities=23% Similarity=0.252 Sum_probs=156.7
Q ss_pred HHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------------
Q psy9101 68 YNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------- 133 (255)
Q Consensus 68 ~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------- 133 (255)
++..|.+.+.+.+|.+.+++.|.+ +||||+||++++++++ +++. .+.+ .+..+|+++|++
T Consensus 28 v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~-~g~~--~~~~---~~~~~A~aiEliH~asLiHDDi~D~ 101 (334)
T 3pko_A 28 LQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFST-FGNA--ATPA---QLQAGAAAIEILHVGTLIHDDVIDD 101 (334)
T ss_dssp HHHHHHHHCCCSCHHHHHHHHHHHHHCCCCHHHHHHHHHHT-TCSC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhCCCCcHHHHHHHHHHH-HcCC--CCHH---HHHHHHHHHHHHHHHHHHhCccCCC
Confidence 446778888889999999999999 8999999999999999 5531 1332 456789999999
Q ss_pred --------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHH
Q psy9101 134 --------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163 (255)
Q Consensus 134 --------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~ 163 (255)
+..++.||.+|+.+..+. .+++++|++++
T Consensus 102 s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~-~~~~~~yl~~i 180 (334)
T 3pko_A 102 SPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYRE-DITLDAYLNEI 180 (334)
T ss_dssp CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCT-TCCHHHHHHHH
T ss_pred CCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 567899999999887654 48999999999
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHh
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQ 242 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~ 242 (255)
++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++++|| .|+|+++||+|||+++|++
T Consensus 181 ~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~ 258 (334)
T 3pko_A 181 AGKTAEL-FALSCYQGAQLAGA-PQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLS 258 (334)
T ss_dssp HHTTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGG
T ss_pred HcchHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHH
Confidence 9999999 99999999999999 8889999999999999999999999999999999999 9999999999999999999
Q ss_pred hCCHHHHHHH
Q psy9101 243 RATPAQRKLM 252 (255)
Q Consensus 243 ~a~~~~r~~l 252 (255)
.++++.++.+
T Consensus 259 ~~~~~l~~~l 268 (334)
T 3pko_A 259 HAPRDFHKLL 268 (334)
T ss_dssp GSHHHHHHHH
T ss_pred hCcHHHHHHH
Confidence 8876777666
No 17
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=6.7e-39 Score=297.48 Aligned_cols=174 Identities=22% Similarity=0.226 Sum_probs=156.8
Q ss_pred hHHHHHHhhhhcchhhHHHHhhccc------------CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-
Q psy9101 67 QYNKAISNNVYLGTYFIVQVLQYNV------------PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~~~~i~~a~~y~~------------~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll- 133 (255)
.+++.+++.+.+.+|.+.++..|.+ +||||+||+++++++++++++ .+ .+..+|+++||+
T Consensus 15 ~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~---~~----~~~~~A~avEliH 87 (352)
T 3nf2_A 15 LATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAA---PE----VGVPGAVAVELVH 87 (352)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCC---GG----GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCC---HH----HHHHHHHHHHHHH
Confidence 4678889999999999999998865 699999999999999998764 22 345679999999
Q ss_pred ----------------------------------------------------------------HHHhhcccchhcccCC
Q psy9101 134 ----------------------------------------------------------------SLKTSMGQSLDLSTAN 149 (255)
Q Consensus 134 ----------------------------------------------------------------~~~~~~GQ~lDl~~~~ 149 (255)
+..++.||.+|+.+..
T Consensus 88 ~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~~~~ 167 (352)
T 3nf2_A 88 NFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEH 167 (352)
T ss_dssp HHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 5578999999999876
Q ss_pred CCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchH
Q psy9101 150 DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDI 228 (255)
Q Consensus 150 ~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di 228 (255)
+. ++|+++|++|+++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|+++|++.+|| .|+|+
T Consensus 168 ~~-~~t~~~y~~~i~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl 244 (352)
T 3nf2_A 168 RD-RVSVEECLEMEGNKTGAL-LACASSIGAVLGGA-DERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDL 244 (352)
T ss_dssp CS-CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHH
T ss_pred CC-CCCHHHHHHHHHcccHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCccc
Confidence 54 489999999999999999 99999999999999 8888999999999999999999999999999999999 99999
Q ss_pred hcCCchHHHHHHHhhCCHHHHH
Q psy9101 229 EDGKCSWLAVVALQRATPAQRK 250 (255)
Q Consensus 229 ~~gK~T~p~i~al~~a~~~~r~ 250 (255)
++||+|||+++|++.+++++++
T Consensus 245 ~egK~Tlpvi~al~~~~~~~~~ 266 (352)
T 3nf2_A 245 RQRKKSLPVVAALAAGGAASER 266 (352)
T ss_dssp HTTCCCHHHHHHHHHCSHHHHH
T ss_pred ccCCccHHHHHHHHhCChHHHH
Confidence 9999999999999998876544
No 18
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=1.2e-38 Score=291.87 Aligned_cols=176 Identities=20% Similarity=0.271 Sum_probs=138.0
Q ss_pred hHHHHHHhhhhcc--hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH----------
Q psy9101 67 QYNKAISNNVYLG--TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV---------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~--~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll---------- 133 (255)
.++..|.+.+... ++.+.+++.|.+ +||||+||+++++++++++.+ .+ .+..+|+++|++
T Consensus 15 ~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~---~~----~~~~~A~avEliH~aSLIHDDi 87 (317)
T 4f62_A 15 RVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDI---SS----LTDASAAALESIHAYSLIHDDL 87 (317)
T ss_dssp HHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCC---CH----HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCC---HH----HHHHHHHHHHHHHHHHHHHCCc
Confidence 3455556666544 678889999998 999999999999999999864 22 456789999999
Q ss_pred --------------------------------------------------------------HHHhhcccchhcccCCCC
Q psy9101 134 --------------------------------------------------------------SLKTSMGQSLDLSTANDL 151 (255)
Q Consensus 134 --------------------------------------------------------------~~~~~~GQ~lDl~~~~~~ 151 (255)
..+|+.||.+|+.+...
T Consensus 88 p~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~- 166 (317)
T 4f62_A 88 PAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENK- 166 (317)
T ss_dssp TTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSS-
T ss_pred ccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCC-
Confidence 02478999999998754
Q ss_pred CCCCHHHHHHHHhccccchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHh
Q psy9101 152 SKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAG-MQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIE 229 (255)
Q Consensus 152 ~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag-~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~ 229 (255)
.+++++|.+|+++|||+| |++||++|++++| + +++..+.+++||.++|+||||+||++|++++++++|| .|+|++
T Consensus 167 -~~t~~~y~~i~~~KTg~L-~~~a~~~Ga~lag~a-~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~ 243 (317)
T 4f62_A 167 -NISLAELEQMHVHKTGAL-IKASVRMGALSTGQV-KPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAE 243 (317)
T ss_dssp -CCCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred -CCCHHHHHHHHHhchHHH-HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHh
Confidence 489999999999999999 9999999999999 7 7888999999999999999999999999999999999 899999
Q ss_pred cCCchHHHHHHHhhCCHHHHHHHH
Q psy9101 230 DGKCSWLAVVALQRATPAQRKLME 253 (255)
Q Consensus 230 ~gK~T~p~i~al~~a~~~~r~~l~ 253 (255)
+||+|||+++|++.+.+..++..+
T Consensus 244 egK~T~p~l~gle~a~~~a~~~~~ 267 (317)
T 4f62_A 244 ANKATYPKLLGLDGAKALVVRLHE 267 (317)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998777766554
No 19
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1e-38 Score=293.93 Aligned_cols=176 Identities=24% Similarity=0.265 Sum_probs=154.7
Q ss_pred HHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------------
Q psy9101 68 YNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------- 133 (255)
Q Consensus 68 ~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------- 133 (255)
++..|.+.+.+.++.+.+++.|.+ .||||+||+++++++++++++ .+ .+..+||++|++
T Consensus 12 v~~~l~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~----~~---~~~~~A~avEliH~asLihDDi~D~ 84 (330)
T 1wmw_A 12 LQERLLARLDHPDPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAP----LE---AGLEAATALELFQNWVLVHDDIEDG 84 (330)
T ss_dssp HHHHHHHHTCCSSHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCC----HH---HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCC----HH---HHHHHHHHHHHHHHHHHHHcccccC
Confidence 446667777777889999999998 999999999999999998753 32 355789999999
Q ss_pred ------------------------------------------------------HHHhhcccchhccc-CCCCCCCCHHH
Q psy9101 134 ------------------------------------------------------SLKTSMGQSLDLST-ANDLSKFTMDR 158 (255)
Q Consensus 134 ------------------------------------------------------~~~~~~GQ~lDl~~-~~~~~~~t~~~ 158 (255)
...++.||.+|+.+ ..+..++++++
T Consensus 85 s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~ 164 (330)
T 1wmw_A 85 SEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPED 164 (330)
T ss_dssp CCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHH
T ss_pred CCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHH
Confidence 45689999999988 65412489999
Q ss_pred HHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHH
Q psy9101 159 YEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLA 237 (255)
Q Consensus 159 y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~ 237 (255)
|++|+++|||+|||++||++|++++|+ +++.. +++||.++|+||||+||++|++++++ +|| .|+|+++||+|||+
T Consensus 165 y~~~i~~KTa~Ls~~~~~~~ga~lag~-~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~p~ 240 (330)
T 1wmw_A 165 YFRMVAHKAAYYTAVAPLRLGALLAGK-TPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTLIL 240 (330)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHTTC-CCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHcCC-CHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCHHH
Confidence 999999999999999999999999998 55444 99999999999999999999999999 999 99999999999999
Q ss_pred HHHHhhCCHHHHHHHHh
Q psy9101 238 VVALQRATPAQRKLMEV 254 (255)
Q Consensus 238 i~al~~a~~~~r~~l~~ 254 (255)
++|++.+++++++.|.+
T Consensus 241 i~al~~~~~~~~~~l~~ 257 (330)
T 1wmw_A 241 LRFLEEAPPEERARALA 257 (330)
T ss_dssp HHHHHHSCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 99999999988877754
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=2.1e-38 Score=294.79 Aligned_cols=184 Identities=21% Similarity=0.272 Sum_probs=154.6
Q ss_pred hHHHHHHHHH-hHHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHH
Q psy9101 57 DVTKWYAKVL-QYNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLA-QPSELTPENLHLAQILGWCVEIV 133 (255)
Q Consensus 57 ~~~~~~~~~l-~~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~-~~~~~~~~~~~~a~~lA~avEll 133 (255)
+...++++-+ .++..|.+.+.+.+|.+.+++.|.+ .||||+||+++++++++++ .+ .+ .+..+|+++|++
T Consensus 35 ~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~~~~~---~~----~~~~~A~avEli 107 (360)
T 3lmd_A 35 ELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPL---SE----NVIKAAVVVEIT 107 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTT---CH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCCCCcHHHHHHHHHHHHhCCCC---hH----HHHHHHHHHHHH
Confidence 4455666555 6778888889999999999999998 9999999999999999876 32 23 345679999999
Q ss_pred -------------------------------------------------------------HHHhhcccchhcccCCCCC
Q psy9101 134 -------------------------------------------------------------SLKTSMGQSLDLSTANDLS 152 (255)
Q Consensus 134 -------------------------------------------------------------~~~~~~GQ~lDl~~~~~~~ 152 (255)
...++.||.+|+.+..+.
T Consensus 108 H~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~- 186 (360)
T 3lmd_A 108 HLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGTDTVAHFAETFGELVTGQMRETVGPRDT- 186 (360)
T ss_dssp HHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCTTS-
T ss_pred HHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccCCC-
Confidence 567899999999988653
Q ss_pred CCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcC
Q psy9101 153 KFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDG 231 (255)
Q Consensus 153 ~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~g 231 (255)
+++++|++|+++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++|
T Consensus 187 -~t~~~y~~~i~~KTg~L-~~~a~~lga~laga-~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~eg 263 (360)
T 3lmd_A 187 -DPIEHYTNVIREKTGVL-IASAGYLGAMHAGA-APEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREG 263 (360)
T ss_dssp -CHHHHHHHHHHHHTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHT
T ss_pred -CCHHHHHHHHHhhhHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcC
Confidence 89999999999999999 99999999999998 8888999999999999999999999999999999999 89999999
Q ss_pred CchHHHHHHHhhCCHHHHHHH
Q psy9101 232 KCSWLAVVALQRATPAQRKLM 252 (255)
Q Consensus 232 K~T~p~i~al~~a~~~~r~~l 252 (255)
|+|||+++|++..++ +++.|
T Consensus 264 K~Tlp~l~al~~~~~-~~~~L 283 (360)
T 3lmd_A 264 VFTLPVLYALREDTP-VGAEL 283 (360)
T ss_dssp CCCHHHHHHHHCCSH-HHHHH
T ss_pred CchHHHHHHHHcCCc-hHHHH
Confidence 999999999998654 34443
No 21
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=6e-39 Score=294.64 Aligned_cols=177 Identities=16% Similarity=0.265 Sum_probs=140.7
Q ss_pred hHHHHHHhhhhcc---hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH---------
Q psy9101 67 QYNKAISNNVYLG---TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV--------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~---~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll--------- 133 (255)
.+++.|.+.+... ++.+.+++.|.+ +||||+||+++++++++++++ .+ .+..+|||+|++
T Consensus 43 ~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~----~~---~~~~~A~aiEliH~aSLIHDD 115 (324)
T 3uca_A 43 EVDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSD----YK---KILTPAMAIEMIHTYSLIHDD 115 (324)
T ss_dssp HHHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTCSC----GG---GGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHHCC
Confidence 4556777777665 889999999999 999999999999999999764 22 345679999999
Q ss_pred -------------------------------------------H--------------------HHhhcccchhcccCCC
Q psy9101 134 -------------------------------------------S--------------------LKTSMGQSLDLSTAND 150 (255)
Q Consensus 134 -------------------------------------------~--------------------~~~~~GQ~lDl~~~~~ 150 (255)
. .+|+.||.+|+.+..+
T Consensus 116 IP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~ 195 (324)
T 3uca_A 116 LPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDK 195 (324)
T ss_dssp STTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSC
T ss_pred chhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCC
Confidence 0 2478999999998865
Q ss_pred CCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHh
Q psy9101 151 LSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIE 229 (255)
Q Consensus 151 ~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~ 229 (255)
. .+|+++|.+|+++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++++|| +|+|++
T Consensus 196 ~-~~t~~~y~~i~~~KTa~L-~~~a~~~Ga~laga-~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~ 272 (324)
T 3uca_A 196 E-EISLKELDYMHLKKTGEL-IKASIMSGAVLAEA-SEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQE 272 (324)
T ss_dssp S-SCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------
T ss_pred C-CCCHHHHHHHHhcchHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhh
Confidence 4 489999999999999999 99999999999999 8888999999999999999999999999999999999 999999
Q ss_pred cCCchHHHHHHHhhCCHHHHHHHH
Q psy9101 230 DGKCSWLAVVALQRATPAQRKLME 253 (255)
Q Consensus 230 ~gK~T~p~i~al~~a~~~~r~~l~ 253 (255)
+||+|||+++|++.+.+..++..+
T Consensus 273 egK~T~p~l~al~~a~~~a~~~~~ 296 (324)
T 3uca_A 273 SNKNNYITIFGLEECKKKCVNITE 296 (324)
T ss_dssp ----CHHHHHCHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877776654
No 22
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-38 Score=290.56 Aligned_cols=174 Identities=19% Similarity=0.243 Sum_probs=136.0
Q ss_pred HHHHhhhhc--chhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------------
Q psy9101 70 KAISNNVYL--GTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------- 133 (255)
Q Consensus 70 ~~l~~~~~~--~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------- 133 (255)
+.|.+.+.. .++.+.+++.|.+ +||||+||+++++++++++++. ++ .+..+|+++|++
T Consensus 23 ~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~--~~----~~~~~A~avEliH~asLIHDDIP~m 96 (302)
T 3p8l_A 23 KVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEM--ET----QDYQVAASLEMIHTYSLIHDDLPAM 96 (302)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCC--CH----HHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCc--cH----HHHHHHHHHHHHHHHHHHHCCchhc
Confidence 344444433 4678888889999 9999999999999999998642 22 345679999999
Q ss_pred --------------------------------------------------------H--HHhhcccchhcccCCCCCCCC
Q psy9101 134 --------------------------------------------------------S--LKTSMGQSLDLSTANDLSKFT 155 (255)
Q Consensus 134 --------------------------------------------------------~--~~~~~GQ~lDl~~~~~~~~~t 155 (255)
. .+|+.||.+|+.+... .++
T Consensus 97 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~--~~t 174 (302)
T 3p8l_A 97 DDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKV--SLT 174 (302)
T ss_dssp TCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--CCC
T ss_pred cCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC--CCC
Confidence 1 3578999999998764 589
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCch
Q psy9101 156 MDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCS 234 (255)
Q Consensus 156 ~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T 234 (255)
+++|.+|+++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|
T Consensus 175 ~~~y~~i~~~KTg~L-~~~~~~~ga~laga-~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T 252 (302)
T 3p8l_A 175 LEELAAVHEKKTGAL-IEFALIAGGVLANQ-TEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKST 252 (302)
T ss_dssp HHHHHHHHHHHTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CC
T ss_pred HHHHHHHHHcCcHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCc
Confidence 999999999999999 99999999999999 8888999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhhCCHHHHHHHH
Q psy9101 235 WLAVVALQRATPAQRKLME 253 (255)
Q Consensus 235 ~p~i~al~~a~~~~r~~l~ 253 (255)
||++++++.+.+..++.++
T Consensus 253 ~p~l~~l~~a~~~~~~~~~ 271 (302)
T 3p8l_A 253 YPALLGIAGAKDALTHQLA 271 (302)
T ss_dssp HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998887777654
No 23
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=9.2e-39 Score=291.29 Aligned_cols=178 Identities=25% Similarity=0.298 Sum_probs=144.4
Q ss_pred hHHHHHHhhhhcc---hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH---------
Q psy9101 67 QYNKAISNNVYLG---TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV--------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~---~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll--------- 133 (255)
.++..|.+.+... ++.+.+++.|.+ .||||+||+++++++++++.+ .+ .+..+|||+|++
T Consensus 13 ~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~----~~---~~~~~A~aiEliH~asLIHDD 85 (304)
T 3lsn_A 13 RVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGK----PE---QANGAACAVELIHAYSLVHDD 85 (304)
T ss_dssp HHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCC----GG---GGHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHHCC
Confidence 4556666666554 578889999998 999999999999999999764 22 355679999999
Q ss_pred ------------------------------------------H-----------------------HHhhcccchhcccC
Q psy9101 134 ------------------------------------------S-----------------------LKTSMGQSLDLSTA 148 (255)
Q Consensus 134 ------------------------------------------~-----------------------~~~~~GQ~lDl~~~ 148 (255)
. .+|+.||.+|+.+.
T Consensus 86 ip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~ 165 (304)
T 3lsn_A 86 LPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSV 165 (304)
T ss_dssp STTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred cccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHcc
Confidence 0 23889999999987
Q ss_pred CCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccch
Q psy9101 149 NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTD 227 (255)
Q Consensus 149 ~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~D 227 (255)
.+ .+++++|.+|+++|||+| |++||++|++++|+.+++..+.+++||.++|+||||+||++|++++++.+|| .|+|
T Consensus 166 ~~--~~s~~~y~~i~~~KTg~L-~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~D 242 (304)
T 3lsn_A 166 GL--KLDQQALEYMHRHKTGAL-IEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGAD 242 (304)
T ss_dssp TC--CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CC--CCCHHHHHHHHHhhhHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccH
Confidence 64 489999999999999999 9999999999999746778899999999999999999999999999999999 8999
Q ss_pred HhcCCchHHHHHHHhhCCHHHHHHHHh
Q psy9101 228 IEDGKCSWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 228 i~~gK~T~p~i~al~~a~~~~r~~l~~ 254 (255)
+++||+|||++++++.+.+..++.+++
T Consensus 243 l~egK~T~p~l~~l~~a~~~a~~~~~~ 269 (304)
T 3lsn_A 243 IARDKPTYPALLGLAAAKEYALELRDQ 269 (304)
T ss_dssp -----CCHHHHHCHHHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888776653
No 24
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=1.8e-38 Score=291.46 Aligned_cols=177 Identities=23% Similarity=0.280 Sum_probs=141.2
Q ss_pred hHHHHHHhhhhcc---hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH---------
Q psy9101 67 QYNKAISNNVYLG---TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV--------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~---~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll--------- 133 (255)
.++..|.+.+... ++.+.+++.|.+ .||||+||+++++++++++.+ .+ .+..+|+++|++
T Consensus 19 ~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~----~~---~~~~~A~avEliH~aSLIHDD 91 (324)
T 3ts7_A 19 RVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVA----AD---LLDGPACAVEFIHVYSLIHDD 91 (324)
T ss_dssp HHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCC----GG---GTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHhhcC
Confidence 4555666666543 678888889999 999999999999999999864 22 345679999999
Q ss_pred -------------------------------------------H----------------------HHhhcccchhcccC
Q psy9101 134 -------------------------------------------S----------------------LKTSMGQSLDLSTA 148 (255)
Q Consensus 134 -------------------------------------------~----------------------~~~~~GQ~lDl~~~ 148 (255)
. .+|+.||.+|+.+.
T Consensus 92 ip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~ 171 (324)
T 3ts7_A 92 LPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASV 171 (324)
T ss_dssp STTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred cccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHcc
Confidence 0 35789999999987
Q ss_pred CCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccc
Q psy9101 149 NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAG-MQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGT 226 (255)
Q Consensus 149 ~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag-~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~ 226 (255)
.+ .+++++|.+|+++|||+| |++||++|++++| + +++..+.+++||.++|+||||+||++|++++++++|| .|+
T Consensus 172 ~~--~~t~~~y~~i~~~KTg~L-~~~a~~~Ga~lag~a-~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~ 247 (324)
T 3ts7_A 172 GK--KLDLPGLENMHIRKTGAL-IRASVRLACLARPGL-PAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGK 247 (324)
T ss_dssp TC--CCCHHHHHHHHHHHTHHH-HHHHHHHHHTTSTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CC--CCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccc
Confidence 65 589999999999999999 9999999999999 7 8888999999999999999999999999999999999 999
Q ss_pred hHhcCCchHHHHHHHhhCCHHHHHHHHh
Q psy9101 227 DIEDGKCSWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 227 Di~~gK~T~p~i~al~~a~~~~r~~l~~ 254 (255)
|+++||+|||+++|++.+.+..++.+++
T Consensus 248 Dl~egK~T~p~l~gle~a~~~a~~~~~~ 275 (324)
T 3ts7_A 248 DRDHNKPNYPALLGLSGAKEKAEEMHEA 275 (324)
T ss_dssp -----CCCHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887776653
No 25
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=3.9e-38 Score=286.28 Aligned_cols=175 Identities=21% Similarity=0.275 Sum_probs=130.5
Q ss_pred HHHHHHhhhhcc-hhhHHHHhhcccCCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------------
Q psy9101 68 YNKAISNNVYLG-TYFIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------- 133 (255)
Q Consensus 68 ~~~~l~~~~~~~-~~~i~~a~~y~~~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------- 133 (255)
++..|.+.+... ++.+.+++.|...||||+||+++++++++++.+ . +.+..+|||+|++
T Consensus 14 ve~~l~~~~~~~~~~~l~~~~~y~~~gGKrlRp~L~l~~~~~~g~~----~---~~~~~~A~avEliH~asLIHDDip~m 86 (297)
T 3m0g_A 14 VETAMAAAIGRLPAGDLRDAMAYAAQGGKRLRAFLAIESAAIHGIS----M---AQAMPAALAVEALHAYSLVHDDMPCM 86 (297)
T ss_dssp HHHHHHHHHHTSCCSHHHHHHHHHHSCSCCHHHHHHHHHHHHTTCC----H---HHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC----H---HHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 344445555443 677888889998899999999999999999763 3 2466789999999
Q ss_pred ---------------------------------------------------------H--HHhhcccchhcccCCCCCCC
Q psy9101 134 ---------------------------------------------------------S--LKTSMGQSLDLSTANDLSKF 154 (255)
Q Consensus 134 ---------------------------------------------------------~--~~~~~GQ~lDl~~~~~~~~~ 154 (255)
. .+|+.||.+|+.+......+
T Consensus 87 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~ 166 (297)
T 3m0g_A 87 DNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPL 166 (297)
T ss_dssp TCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCC
T ss_pred CCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCC
Confidence 1 45889999999987311258
Q ss_pred CHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCc
Q psy9101 155 TMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKC 233 (255)
Q Consensus 155 t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~ 233 (255)
++++|.+|+++|||+| |++||++|++++|+ +++ .+++||.++|+||||+||++|++++++++|| .|+|+++||+
T Consensus 167 ~~~~y~~i~~~KTg~L-~~~~~~~ga~lag~-~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~ 241 (297)
T 3m0g_A 167 TLDEIIRLQAGKTGAL-ISFAAQAGAILAGA-DRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKA 241 (297)
T ss_dssp CHHHHHHHHHHHTHHH-HHHHHHHHHHHHTC-CCH---HHHHHHHHHHHHHHHHTTCC---------------------C
T ss_pred CHHHHHHHHccchHHH-HHHHHHHHHHHcCC-CHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCc
Confidence 9999999999999999 99999999999998 544 8999999999999999999999999999999 9999999999
Q ss_pred hHHHHHHHhhCCHHHHHHHHh
Q psy9101 234 SWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 234 T~p~i~al~~a~~~~r~~l~~ 254 (255)
|||++++++.+.+..++.+++
T Consensus 242 T~p~l~~l~~a~~~~~~~~~~ 262 (297)
T 3m0g_A 242 TFVSLLGLAGAKSRAADLVAE 262 (297)
T ss_dssp CHHHHHCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888877653
No 26
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=5.5e-38 Score=286.93 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=136.4
Q ss_pred chhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------------------
Q psy9101 79 GTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------------ 133 (255)
Q Consensus 79 ~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------------ 133 (255)
.++.+.+++.|.+ +||||+||+++++++++++.+. ..++..+.+..+|||+|++
T Consensus 32 ~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~-~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt 110 (311)
T 3llw_A 32 FHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQK-DYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPT 110 (311)
T ss_dssp SCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEEC
T ss_pred CcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCc-ccccchHHHHHHHHHHHHHHHHHHHHCCccccCCCcccCCCCc
Confidence 4567777889999 9999999999999999997631 0112235677899999999
Q ss_pred -----------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhcc
Q psy9101 134 -----------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYK 166 (255)
Q Consensus 134 -----------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~K 166 (255)
..+|+.||.+|+.+... .+|+++|.+|+++|
T Consensus 111 ~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~K 188 (311)
T 3llw_A 111 LHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFENT--PLNLEQLTFLHEHK 188 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--CCCHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCC--CCCHHHHHHHHHHh
Confidence 13578999999998742 58999999999999
Q ss_pred ccchhHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhhCC
Q psy9101 167 TAFYSFQLPVALAMHMAGMQDVEVH-RQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQRAT 245 (255)
Q Consensus 167 Ta~Ltf~~~~~lga~lag~~~~~~~-~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~a~ 245 (255)
||+| |++||++|++++|+ +++.. +.+++||.++|+||||+||++|+++|++++||...| ++||+|||++++++.++
T Consensus 189 Tg~L-~~~a~~lga~laga-~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~-~~gK~T~p~l~~l~~a~ 265 (311)
T 3llw_A 189 TAKL-ISASLIMGLVASGI-KDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL-DSAKNSFVNLLGLERAN 265 (311)
T ss_dssp THHH-HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCSCHHHHHCHHHHH
T ss_pred HHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc-ccCcchHHHHHHHHHHH
Confidence 9999 99999999999998 66777 899999999999999999999999999999994445 99999999999999999
Q ss_pred HHHHHHHHh
Q psy9101 246 PAQRKLMEV 254 (255)
Q Consensus 246 ~~~r~~l~~ 254 (255)
+++++.+++
T Consensus 266 ~~~~~~~~~ 274 (311)
T 3llw_A 266 NYAQTLKTE 274 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
No 27
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=2.4e-38 Score=288.30 Aligned_cols=176 Identities=24% Similarity=0.334 Sum_probs=139.1
Q ss_pred hHHHHHHhhhhcc---hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH---------
Q psy9101 67 QYNKAISNNVYLG---TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV--------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~---~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll--------- 133 (255)
.++..|.+.+... ++.+.+++.|.+ .||||+||+++++++++++.+ .+ .+..+||++|++
T Consensus 19 ~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~----~~---~~~~~A~aiEliH~asLIHDD 91 (302)
T 3p8r_A 19 RNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCE----LS---DLDTPASAVECIHAYSLIHDD 91 (302)
T ss_dssp HHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCC----GG---GTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHHCC
Confidence 3455566666543 678999999999 999999999999999998764 22 355679999999
Q ss_pred ------------------------------------------H-----------------------HHhhcccchhcccC
Q psy9101 134 ------------------------------------------S-----------------------LKTSMGQSLDLSTA 148 (255)
Q Consensus 134 ------------------------------------------~-----------------------~~~~~GQ~lDl~~~ 148 (255)
. .+|+.||.+|+.+.
T Consensus 92 Ip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~ 171 (302)
T 3p8r_A 92 LPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAE 171 (302)
T ss_dssp CHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTT
T ss_pred cccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHcc
Confidence 0 25789999999987
Q ss_pred CCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccc
Q psy9101 149 NDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAG-MQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGT 226 (255)
Q Consensus 149 ~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag-~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~ 226 (255)
.. .+|+++|.+|+++|||+| |++||++|++++| + +++..+.+++||.++|+||||+||++|++++++.+|| .|+
T Consensus 172 ~~--~~s~~~y~~i~~~KTa~L-~~~~~~~ga~lag~~-~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~ 247 (302)
T 3p8r_A 172 NR--LISLEELETIHRNKTGAL-MRCAIRLGALAAGEK-GRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGS 247 (302)
T ss_dssp TS--CCCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTHH-HHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred CC--CCCHHHHHHHhccCcHHH-HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcch
Confidence 53 589999999999999999 9999999999999 7 6778899999999999999999999999999999999 999
Q ss_pred hHhcCCchHHHHHHHhhCCHHHHHHHH
Q psy9101 227 DIEDGKCSWLAVVALQRATPAQRKLME 253 (255)
Q Consensus 227 Di~~gK~T~p~i~al~~a~~~~r~~l~ 253 (255)
|+++||+|||++++++.+.+..++.++
T Consensus 248 Dl~egK~T~p~l~~l~~a~~~a~~~~~ 274 (302)
T 3p8r_A 248 DQELNKSTYPALLGLEGAQQKAHTLLQ 274 (302)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877776654
No 28
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=9.5e-38 Score=285.59 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=133.2
Q ss_pred hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------------------------
Q psy9101 80 TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------------- 133 (255)
Q Consensus 80 ~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------------- 133 (255)
++.+.+++.|.+ .||||+||+++++++++++++ . +.+..+|||+|++
T Consensus 35 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~----~---~~~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~ 107 (313)
T 3lom_A 35 APQIRSALHYALFSGGKRIRPILVYLAGDLIDVD----Q---GVLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSC 107 (313)
T ss_dssp CHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCC----H---HHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECH
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----H---HHHHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCc
Confidence 677888889998 999999999999999998763 3 3466789999999
Q ss_pred --------------------------H-----------------------HHhhcccchhcccCCCCCCCCHHHHHHHHh
Q psy9101 134 --------------------------S-----------------------LKTSMGQSLDLSTANDLSKFTMDRYEAIVK 164 (255)
Q Consensus 134 --------------------------~-----------------------~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~ 164 (255)
. .+|+.||.+|+.+..+. .+++++|.+|++
T Consensus 108 h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~-~~t~~~y~~i~~ 186 (313)
T 3lom_A 108 HKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKS-SVTEEQLREIHL 186 (313)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSS-CCCHHHHHHHHH
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCC-CCCHHHHHHHHH
Confidence 1 24688999999987653 489999999999
Q ss_pred ccccchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHH
Q psy9101 165 YKTAFYSFQLPVALAMHMAG--MQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVAL 241 (255)
Q Consensus 165 ~KTa~Ltf~~~~~lga~lag--~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al 241 (255)
+|||+| |++||++ ++++| + +++..+.+++||.++|+||||+||++|++++++++|| .|+|+++||+|||+++|+
T Consensus 187 ~KTg~L-~~~a~~~-a~lag~~a-~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l 263 (313)
T 3lom_A 187 LKTGKL-ILACFEM-VLAAQHEV-SEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNK 263 (313)
T ss_dssp HHTHHH-HHHHHHH-HHTTCSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCH
T ss_pred cCcHHH-HHHHHHH-HHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHH
Confidence 999999 9999999 99999 7 8888999999999999999999999999999999999 999999999999999999
Q ss_pred hhCCHHHHHHHHh
Q psy9101 242 QRATPAQRKLMEV 254 (255)
Q Consensus 242 ~~a~~~~r~~l~~ 254 (255)
+.+.+..++.+++
T Consensus 264 ~~a~~~a~~~~~~ 276 (313)
T 3lom_A 264 QQLEEEIAVHYQI 276 (313)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988887776653
No 29
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.8e-37 Score=282.23 Aligned_cols=166 Identities=20% Similarity=0.190 Sum_probs=143.9
Q ss_pred HHHHHHhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 68 YNKAISNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQ-PSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 68 ~~~~l~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~-~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
++..|.+.+.+.+| +++.|.+ +||||+||+++++++++++. + .+ .+..+|||+|++
T Consensus 16 v~~~l~~~~~~~~~---~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~---~~----~~~~~A~avEliH~asLiHDDi~D 85 (299)
T 1v4e_A 16 VKERIEQILSQFFP---EQIMKDLPLYGKMLRVRLSILSFKNRGVEI---GE----DAISSLAALELVHLASLLHDDVID 85 (299)
T ss_dssp HHHHHHHHHHHHSC---HHHHTTSCCCCCCHHHHHHHHHHHHHTCCC---CH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCH---HHHHHHHhCCCCcHHHHHHHHHHHHcCCCC---hh----HHHHHHHHHHHHHHHHHhhCCCCC
Confidence 33444555544444 7888988 89999999999999999976 3 22 345689999999
Q ss_pred --------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHH
Q psy9101 134 --------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163 (255)
Q Consensus 134 --------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~ 163 (255)
...++.||.+|+.+..+. +++++|++|+
T Consensus 86 ~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i 163 (299)
T 1v4e_A 86 GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIV 163 (299)
T ss_dssp TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred CCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHH
Confidence 567899999999987653 8999999999
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHh
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQ 242 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~ 242 (255)
++|||+| |++||++|++++|+ ++ +.+++||.++|+||||+||++|+++| +.+|| .|+|+++||+|||+++|++
T Consensus 164 ~~KTa~L-~~~~~~~ga~lag~-~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~ 237 (299)
T 1v4e_A 164 EGKSGAL-FGLALQLPALLEGE-LG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAME 237 (299)
T ss_dssp HHHTHHH-HHHHHHHHHHHHTC-CC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHH
T ss_pred HhccHHH-HHHHHHHHHHHcCC-CH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHH
Confidence 9999999 99999999999998 54 78999999999999999999999999 99999 9999999999999999999
Q ss_pred hCCHHHHHHH
Q psy9101 243 RATPAQRKLM 252 (255)
Q Consensus 243 ~a~~~~r~~l 252 (255)
.+++ .++.+
T Consensus 238 ~~~~-l~~~l 246 (299)
T 1v4e_A 238 KFPE-ARQMF 246 (299)
T ss_dssp HCHH-HHHHH
T ss_pred hChH-HHHHH
Confidence 8876 66555
No 30
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=5.2e-38 Score=286.02 Aligned_cols=174 Identities=24% Similarity=0.395 Sum_probs=138.1
Q ss_pred HHHHHhhhhc--chhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 69 NKAISNNVYL--GTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 69 ~~~l~~~~~~--~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
+..|.+.+.. .++.+.+++.|.+ .||||+||+++++++++++++ ++ .+..+|+++|++
T Consensus 14 ~~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~----~~---~~~~~A~avEliH~asLiHDDiP~ 86 (301)
T 1rtr_A 14 NNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTE----YE---LGMKSAIALEMIHTYSLIHDDLPA 86 (301)
T ss_dssp HHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSC----GG---GGHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHhCCchh
Confidence 3444454443 4566788889998 999999999999999998763 22 244679999999
Q ss_pred ----------------------------------------------------------H--HHhhcccchhcccCCCCCC
Q psy9101 134 ----------------------------------------------------------S--LKTSMGQSLDLSTANDLSK 153 (255)
Q Consensus 134 ----------------------------------------------------------~--~~~~~GQ~lDl~~~~~~~~ 153 (255)
. .+++.||.+|+.+..+ .
T Consensus 87 ~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~--~ 164 (301)
T 1rtr_A 87 MDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ--P 164 (301)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--C
T ss_pred ccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCC--C
Confidence 1 4589999999998765 5
Q ss_pred CCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCC
Q psy9101 154 FTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGK 232 (255)
Q Consensus 154 ~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK 232 (255)
+++++|.+|+++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++.+|| .|+|+++||
T Consensus 165 ~~~~~y~~i~~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK 242 (301)
T 1rtr_A 165 IDLETLEMIHKTKTGAL-LTFAVMSAADIANV-DDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNK 242 (301)
T ss_dssp CCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred CCHHHHHHHHHhchHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCC
Confidence 89999999999999999 99999999999998 8889999999999999999999999999999999999 899999999
Q ss_pred chHHHHHHHhhCCHHHHHHHH
Q psy9101 233 CSWLAVVALQRATPAQRKLME 253 (255)
Q Consensus 233 ~T~p~i~al~~a~~~~r~~l~ 253 (255)
+|||++++++.+....++..+
T Consensus 243 ~T~p~l~al~~a~~~a~~~~~ 263 (301)
T 1rtr_A 243 STYVSLLGKDGAEDKLTYHRD 263 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 999999999987666665543
No 31
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.5e-37 Score=286.68 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=136.7
Q ss_pred hHHHHHHhhhhc--------chhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH----
Q psy9101 67 QYNKAISNNVYL--------GTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV---- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~--------~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll---- 133 (255)
.++..|.+.+.. .++.+.+++.|.+ .||||+||+++++++++++++ ++ .+..+|+++|++
T Consensus 49 ~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~----~~---~~~~~A~aiEliH~as 121 (335)
T 2h8o_A 49 KTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGD----AE---AGLHVGAALECLHCYS 121 (335)
T ss_dssp HHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCC----HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHH
Confidence 345555665544 4678888999998 999999999999999998763 32 356789999999
Q ss_pred -------------------------------------------------------------------H--HHhhcccchh
Q psy9101 134 -------------------------------------------------------------------S--LKTSMGQSLD 144 (255)
Q Consensus 134 -------------------------------------------------------------------~--~~~~~GQ~lD 144 (255)
. .+|+.||.+|
T Consensus 122 LIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lD 201 (335)
T 2h8o_A 122 LVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALD 201 (335)
T ss_dssp HHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1 4589999999
Q ss_pred cccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-
Q psy9101 145 LSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK- 223 (255)
Q Consensus 145 l~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK- 223 (255)
+.+..+ .+++++|++|+++|||+| |++||.+|++++|+ +++..+.+++||.++|+||||+||++|++++++++||
T Consensus 202 l~~~~~--~~~~~~y~~i~~~KTa~L-~~~a~~~Ga~laga-~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~ 277 (335)
T 2h8o_A 202 LAAEKK--APDEDGIITLQAMKTGAL-LRFACEAGAIIAGS-NQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKA 277 (335)
T ss_dssp HHHHHS--CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHccCC--CCCHHHHHHHHHhchHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCC
Confidence 988765 489999999999999999 99999999999998 8889999999999999999999999999999999999
Q ss_pred ccchHhcCCchHHHHHHHhhCCHHHHHHHH
Q psy9101 224 IGTDIEDGKCSWLAVVALQRATPAQRKLME 253 (255)
Q Consensus 224 ~g~Di~~gK~T~p~i~al~~a~~~~r~~l~ 253 (255)
.|+|+++||+|||++++++.+....++..+
T Consensus 278 ~g~Dl~egK~T~p~l~~le~a~~~a~~~~~ 307 (335)
T 2h8o_A 278 TGKDAARGKGTLVALRGEAWAREKLQEQVA 307 (335)
T ss_dssp --------CCCHHHHHCHHHHHHHHHHHHH
T ss_pred cchHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877665555443
No 32
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=5.8e-38 Score=290.67 Aligned_cols=183 Identities=21% Similarity=0.256 Sum_probs=145.7
Q ss_pred hHHHHHHhhhhcchhhHHHHhhccc-CC--CCccchHHHHHHHHHhcCCCCC----------CHHHHHHHHHHHHHHHHH
Q psy9101 67 QYNKAISNNVYLGTYFIVQVLQYNV-PS--GKKNRGLALVVAYKMLAQPSEL----------TPENLHLAQILGWCVEIV 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~~~~i~~a~~y~~-~g--GKr~Rpll~lla~~~l~~~~~~----------~~~~~~~a~~lA~avEll 133 (255)
.++..|.+.+.+.+|.+.+++.|.+ .| |||+||++++++++++++.... +.+..+.+..+||++|++
T Consensus 20 ~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~avEli 99 (348)
T 3apz_A 20 LLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMI 99 (348)
T ss_dssp HHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHHHHHHHHHH
Confidence 3446667778888889999999998 67 9999999999999998752100 122234567889999999
Q ss_pred --------------------------------------------------------------HHHhhcccchhcccCCCC
Q psy9101 134 --------------------------------------------------------------SLKTSMGQSLDLSTANDL 151 (255)
Q Consensus 134 --------------------------------------------------------------~~~~~~GQ~lDl~~~~~~ 151 (255)
...++.||.+|+.+..+.
T Consensus 100 H~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~ 179 (348)
T 3apz_A 100 HVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQ 179 (348)
T ss_dssp HHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 567899999999876532
Q ss_pred CCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhc
Q psy9101 152 SKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIED 230 (255)
Q Consensus 152 ~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~ 230 (255)
.+++++|++|+++|||+| |++||.+|++++|+ +++..+.+.+||.++|+||||+||++|++++++.+|| .|+|+++
T Consensus 180 -~~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~e 256 (348)
T 3apz_A 180 -RYSMDYYMQKTYYKTASL-ISNSCKAVAVLTGQ-TAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRH 256 (348)
T ss_dssp -HTCHHHHHHHHHHHHTHH-HHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHT
T ss_pred -CCCHHHHHHHHHcchHHH-HHHHHHHHHHHcCc-CHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhC
Confidence 378999999999999999 99999999999998 8888999999999999999999999999999999999 9999999
Q ss_pred CCchHHHHHHHhhCCHHHHHHHH
Q psy9101 231 GKCSWLAVVALQRATPAQRKLME 253 (255)
Q Consensus 231 gK~T~p~i~al~~a~~~~r~~l~ 253 (255)
||+|||+++|++.. ++.++.+.
T Consensus 257 gK~Tlp~l~al~~~-~~~~~~l~ 278 (348)
T 3apz_A 257 GVITAPILFAMEEF-PQLREVVD 278 (348)
T ss_dssp TCCCHHHHHHHHHC-TTHHHHHH
T ss_pred CChhHHHHHHHHcC-HHHHHHHH
Confidence 99999999999874 45666654
No 33
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=1.1e-37 Score=283.62 Aligned_cols=175 Identities=26% Similarity=0.324 Sum_probs=151.8
Q ss_pred HHHHHHhhhhcc---hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH----------
Q psy9101 68 YNKAISNNVYLG---TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV---------- 133 (255)
Q Consensus 68 ~~~~l~~~~~~~---~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll---------- 133 (255)
++..|.+.+... ++.+.+++.|.+ .||||+||+++++++++++++ .+ .+..+|+++|++
T Consensus 14 v~~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~----~~---~~~~~A~avEliH~asLiHDDi 86 (299)
T 1rqj_A 14 ANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVS----TN---TLDAPAAAVECIHAYSLIHDDL 86 (299)
T ss_dssp HHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCC----HH---HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHhHHHhCCC
Confidence 445555555443 677888999998 999999999999999998763 32 456789999999
Q ss_pred --------------------------------------------------------------H--HHhhcccchhcccCC
Q psy9101 134 --------------------------------------------------------------S--LKTSMGQSLDLSTAN 149 (255)
Q Consensus 134 --------------------------------------------------------------~--~~~~~GQ~lDl~~~~ 149 (255)
+ .+++.||.+|+.+..
T Consensus 87 P~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~ 166 (299)
T 1rqj_A 87 PAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG 166 (299)
T ss_dssp TTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred hhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccC
Confidence 0 357899999999876
Q ss_pred CCCCCCHHHHHHHHhccccchhHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccch
Q psy9101 150 DLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHM-AGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTD 227 (255)
Q Consensus 150 ~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~l-ag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~D 227 (255)
+ .+++++|.+|+++|||+| |++||++|+++ +|+ +++..+.+++||.++|++|||+||++|++++++++|| .|+|
T Consensus 167 ~--~~~~~~y~~i~~~KTa~L-~~~~~~~ga~l~ag~-~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~D 242 (299)
T 1rqj_A 167 K--HVPLDALERIHRHKTGAL-IRAAVRLGALSAGDK-GRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGAD 242 (299)
T ss_dssp T--CCCHHHHHHHHHHHTHHH-HHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHH
T ss_pred C--CCCHHHHHHHHHhhhHHH-HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhH
Confidence 5 589999999999999999 99999999999 987 7888999999999999999999999999999999999 9999
Q ss_pred HhcCCchHHHHHHHhhCCHHHHHHHH
Q psy9101 228 IEDGKCSWLAVVALQRATPAQRKLME 253 (255)
Q Consensus 228 i~~gK~T~p~i~al~~a~~~~r~~l~ 253 (255)
+++||+|||++++++.+....++.++
T Consensus 243 l~~gK~T~p~l~~l~~a~~~~~~~~~ 268 (299)
T 1rqj_A 243 QQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_dssp HHHTCCCHHHHHCHHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766666544
No 34
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=5.8e-37 Score=287.01 Aligned_cols=164 Identities=26% Similarity=0.387 Sum_probs=140.5
Q ss_pred hcccCCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH----------------------------------
Q psy9101 88 QYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV---------------------------------- 133 (255)
Q Consensus 88 ~y~~~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll---------------------------------- 133 (255)
.|..+||||+||++++++++++++.. .+....+.+..+|+|+||+
T Consensus 56 ~~~~~gGKrlRp~l~l~~~~~~g~~~-~~~~~~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~ 134 (380)
T 3lk5_A 56 SFVLNGGKRIRPLYAWAGFLAAQGHK-NSSEKLESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRAN 134 (380)
T ss_dssp HHHHSCCCCHHHHHHHHHHHHHHTTS-CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------
T ss_pred HHHhCCCcchhHHHHHHHHHHcCCCc-cccCCHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhc
Confidence 34449999999999999999987520 0111123566789999999
Q ss_pred -------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHh
Q psy9101 134 -------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVK 164 (255)
Q Consensus 134 -------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~ 164 (255)
...++.||.+|+.+..+. .+++++|++|++
T Consensus 135 ~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~ 213 (380)
T 3lk5_A 135 NFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHA-NESVELADSVNR 213 (380)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred ccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence 246789999999987644 379999999999
Q ss_pred ccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhh
Q psy9101 165 YKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQR 243 (255)
Q Consensus 165 ~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~ 243 (255)
+|||+|||++||.+|++++|+ +++..+.+++||.++|+||||+||++|++||++.+|| .|+|+++||+|||+++|++.
T Consensus 214 ~KTa~L~~~~~~~~Ga~laga-~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~ 292 (380)
T 3lk5_A 214 FKTAAYTIARPLHLGASIAGG-SPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQR 292 (380)
T ss_dssp HHTHHHHTHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred hhchHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHh
Confidence 999999899999999999999 8888999999999999999999999999999999999 99999999999999999998
Q ss_pred C---CHHHHHHHHh
Q psy9101 244 A---TPAQRKLMEV 254 (255)
Q Consensus 244 a---~~~~r~~l~~ 254 (255)
+ +|++++.|++
T Consensus 293 ~~~~~~~~~~~L~~ 306 (380)
T 3lk5_A 293 ADKQSPEAATAIRA 306 (380)
T ss_dssp HHHHCHHHHHHHHH
T ss_pred CccCChHHHHHHHH
Confidence 7 3677777653
No 35
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=1.6e-36 Score=277.66 Aligned_cols=156 Identities=20% Similarity=0.219 Sum_probs=137.9
Q ss_pred hccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH---------------------------------
Q psy9101 88 QYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV--------------------------------- 133 (255)
Q Consensus 88 ~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll--------------------------------- 133 (255)
.|.+ +||||+||++++++++. .. ..-..+.+..+|+++|++
T Consensus 28 ~y~~~~gGKrlRp~l~l~~~~~-~~----~~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AI 102 (315)
T 3tc1_A 28 LFSKIGPSKMLRSKLMLALLNE-KT----DAILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAV 102 (315)
T ss_dssp HHTTCCCCCCHHHHHHHTTCCT-TC----CHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCSHHH
T ss_pred HHHhcCCcccHHHHHHHHHhcc-Cc----cccchhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHH
Confidence 5666 99999999999998872 11 111125667889999999
Q ss_pred ----------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCC
Q psy9101 134 ----------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGM 185 (255)
Q Consensus 134 ----------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~ 185 (255)
+..++.||.+|+.+..+. .+++++|++|+++|||+| |++||++|++++|+
T Consensus 103 l~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L-~~~~~~~ga~lag~ 180 (315)
T 3tc1_A 103 MLGDVFYSKAFFELSKMGELIAQALSNAVLRLSRGEIEDVFVGECF-NSDKQKYWRILEDKTAHF-IEASLKSMAILLNK 180 (315)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhcchHHH-HHHHHHHHHHHcCC
Confidence 567899999999987654 489999999999999999 99999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhhCCHHHHHHHHh
Q psy9101 186 QDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRATPAQRKLMEV 254 (255)
Q Consensus 186 ~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~a~~~~r~~l~~ 254 (255)
+ .+.+++||.++|+||||+||++|++++++.+|| .|+|+++||+|||+++|++.+++++|+.|.+
T Consensus 181 -~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~ 246 (315)
T 3tc1_A 181 -D---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLIS 246 (315)
T ss_dssp -C---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred -C---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHH
Confidence 5 678999999999999999999999999999999 9999999999999999999999999888764
No 36
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=3e-37 Score=279.71 Aligned_cols=165 Identities=20% Similarity=0.275 Sum_probs=133.0
Q ss_pred cchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-----------------------
Q psy9101 78 LGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV----------------------- 133 (255)
Q Consensus 78 ~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll----------------------- 133 (255)
+.+|.+.+++.|.+ +||||+||++++++++++++. +. +.+..+|||+|++
T Consensus 22 ~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~~---~~---~~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~p 95 (291)
T 3npk_A 22 SFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPE---LL---NQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIP 95 (291)
T ss_dssp SSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGG---GH---HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEE
T ss_pred CCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCC---cH---HHHHHHHHHHHHHHHHHHHHCCcccccCCCCCCCCC
Confidence 44677888889998 999999999999999998642 11 3566789999999
Q ss_pred ------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhc
Q psy9101 134 ------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKY 165 (255)
Q Consensus 134 ------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~ 165 (255)
..+|+.||.+|+.+... .+++++|.+|+++
T Consensus 96 t~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~ 173 (291)
T 3npk_A 96 TLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDK--RLSLNELEFLHTH 173 (291)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS--CCCHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC--CCCHHHHHHHHHc
Confidence 13578999999988753 5899999999999
Q ss_pred cccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhhC
Q psy9101 166 KTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 166 KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~a 244 (255)
|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|++++++++|| .|.| +||+|||++++++.+
T Consensus 174 KTg~L-~~~a~~~ga~laga-~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~p~l~~l~~a 249 (291)
T 3npk_A 174 KTARL-IAAALKMGCEICEL-NNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSFVNLLGLEQA 249 (291)
T ss_dssp HTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCHHHHHCHHHH
T ss_pred ccHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchHHHHHHHHHh
Confidence 99999 99999999999998 7888899999999999999999999999999999999 7776 999999999999999
Q ss_pred CHHHHHHHHh
Q psy9101 245 TPAQRKLMEV 254 (255)
Q Consensus 245 ~~~~r~~l~~ 254 (255)
++++++.+++
T Consensus 250 ~~~~~~~~~~ 259 (291)
T 3npk_A 250 IKTKENLLNE 259 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 37
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=4.7e-37 Score=283.89 Aligned_cols=168 Identities=23% Similarity=0.265 Sum_probs=136.5
Q ss_pred HHHHHhhh---hcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-----------
Q psy9101 69 NKAISNNV---YLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV----------- 133 (255)
Q Consensus 69 ~~~l~~~~---~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll----------- 133 (255)
+..+.+.. .+.++.+.+++.|.+ .||||+||+++++++++++.+ .+ .+..+|+++|++
T Consensus 11 ~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~----~~---~~~~~A~avEliH~asLiHDDI~ 83 (340)
T 2e8v_A 11 DELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLP----KD---QLAIVSQIVELLHNSSLLIDDIE 83 (340)
T ss_dssp HHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCC----HH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHhCccc
Confidence 34444544 456778888889998 899999999999999998753 32 355789999999
Q ss_pred --------------------------------------------------------HHHhhcccchhcccCCCC--CCCC
Q psy9101 134 --------------------------------------------------------SLKTSMGQSLDLSTANDL--SKFT 155 (255)
Q Consensus 134 --------------------------------------------------------~~~~~~GQ~lDl~~~~~~--~~~t 155 (255)
...++.||.+|+.+..+. ..++
T Consensus 84 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t 163 (340)
T 2e8v_A 84 DNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIPT 163 (340)
T ss_dssp TTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCC
T ss_pred cCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC
Confidence 457899999999876543 3479
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCch
Q psy9101 156 MDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCS 234 (255)
Q Consensus 156 ~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T 234 (255)
+++|++|+++|||+| |++||++|++++|+ ++ ..+.+.+||.++|+||||+||++|++++++.+|| .|+|+++||+|
T Consensus 164 ~~~y~~~i~~KTa~L-~~~~~~~ga~lag~-~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T 240 (340)
T 2e8v_A 164 QEMYLNMVMNKTGGL-FRLTLRLMEALSPS-SH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLS 240 (340)
T ss_dssp HHHHHHHHHHHTHHH-HHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCC
T ss_pred HHHHHHHHHhhhHHH-HHHHHHHHHHHcCC-cH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCch
Confidence 999999999999999 99999999999998 55 5789999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhhCCH
Q psy9101 235 WLAVVALQRATP 246 (255)
Q Consensus 235 ~p~i~al~~a~~ 246 (255)
||+++|++.+++
T Consensus 241 lp~i~al~~~~~ 252 (340)
T 2e8v_A 241 FPIVHALNFTKT 252 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc
Confidence 999999998755
No 38
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.2e-36 Score=276.93 Aligned_cols=159 Identities=25% Similarity=0.312 Sum_probs=132.6
Q ss_pred HhhhhcchhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------------
Q psy9101 73 SNNVYLGTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------ 133 (255)
Q Consensus 73 ~~~~~~~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------ 133 (255)
++.+.+.++.+.+++.|.+ .||||+||+++++++++++.+ ++ .+..+|+++|++
T Consensus 3 ~k~~~~~~~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~~~~----~~---~~~~~A~avEliH~asLiHDDi~D~s~~RR 75 (301)
T 2q80_A 3 EKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVP----ED---KLQIIIEVTEMLHNASLLIDDIEDNSKLRR 75 (301)
T ss_dssp ----CCHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCC----HH---HHHHHHHHHHHHHHHHHHHHHHHHTCSEET
T ss_pred ccccCCCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHHccccCCCCCCC
Confidence 4556677888999999998 899999999999999998753 32 356789999999
Q ss_pred --------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccc
Q psy9101 134 --------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAF 169 (255)
Q Consensus 134 --------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~ 169 (255)
+..++.||.+|+.+..+...+++++|++|+++|||+
T Consensus 76 G~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~ 155 (301)
T 2q80_A 76 GFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGG 155 (301)
T ss_dssp TEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHH
Confidence 567899999999875443357999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhhC
Q psy9101 170 YSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRA 244 (255)
Q Consensus 170 Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~a 244 (255)
| |.+||.+|++++|. ++ .+.+||.++|+||||+||++|++++++.+|| .|+|+++||+|||+++|++..
T Consensus 156 L-~~~~~~~ga~~a~~-~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 225 (301)
T 2q80_A 156 L-FGLAVGLMQLFSDY-KE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSR 225 (301)
T ss_dssp H-HHHHHHHHHHTCCC-CS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHS
T ss_pred H-HHHHHHHHHHHCCC-hH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHcC
Confidence 9 99999999999997 52 4899999999999999999999999999999 999999999999999999863
No 39
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=8e-36 Score=269.56 Aligned_cols=160 Identities=19% Similarity=0.272 Sum_probs=130.2
Q ss_pred chhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------------------
Q psy9101 79 GTYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------------ 133 (255)
Q Consensus 79 ~~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------------ 133 (255)
.++.+.+++.|.+ +||||+||+++++++++++.+ ++ .+..+||++|++
T Consensus 30 ~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~----~~---~~~~~A~avEliH~asLIHDDIP~~D~s~~RRG~pt 102 (284)
T 2ftz_A 30 WDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVE----EE---XLLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPS 102 (284)
T ss_dssp SCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCC----HH---HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEEC
T ss_pred CCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCcC----HH---HHHHHHHHHHHHHHHHHHhCCchhcCCCCCCCCCcc
Confidence 3466788889998 999999999999999999763 32 356789999999
Q ss_pred ----------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHH
Q psy9101 134 ----------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQ 173 (255)
Q Consensus 134 ----------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~ 173 (255)
..+++.||.+|+.+..+...+++++|.+|+++|||+| |+
T Consensus 103 ~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L-~~ 181 (284)
T 2ftz_A 103 CHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGAL-FA 181 (284)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHH-HH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHH-HH
Confidence 4688999999998876432489999999999999999 99
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCC-ccchHhcCCchHHHHHHHhhCCHHHHHHH
Q psy9101 174 LPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK-IGTDIEDGKCSWLAVVALQRATPAQRKLM 252 (255)
Q Consensus 174 ~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK-~g~Di~~gK~T~p~i~al~~a~~~~r~~l 252 (255)
+||++|++++|+ +++ .+++||.++|+||||+||++|++++++.+|| .|+|++ |+|||++++++.+....++..
T Consensus 182 ~~~~~ga~lag~-~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~l~~a~~~a~~~~ 255 (284)
T 2ftz_A 182 FCFSAPFILXGX-DHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVGIQXAREMADXYY 255 (284)
T ss_dssp HHHHHHHHHHTC-CCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-Chh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHHHHHHHHHHHHHH
Confidence 999999999998 544 8999999999999999999999999999999 999999 999999999987765555443
No 40
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=2.9e-34 Score=260.61 Aligned_cols=148 Identities=16% Similarity=0.243 Sum_probs=119.7
Q ss_pred hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-------------------------
Q psy9101 80 TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------------------- 133 (255)
Q Consensus 80 ~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------------------- 133 (255)
++.+.+++.|.+ +||||+||+++++++++++++ .+ .+..+|+++|++
T Consensus 27 ~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~---~~----~~~~~A~avEliH~asLIHDDi~D~s~~RRG~pt~h~ 99 (295)
T 3ipi_A 27 DPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGS---YS----RSLNAALAVEMMHSASLIHDDLLDQGLVRRNLPSAPE 99 (295)
T ss_dssp SHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSC---CG----GGHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSCCCCC
T ss_pred cHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC---HH----HHHHHHHHHHHHHHHHHHHCcCcCCCCCCCCCccHHH
Confidence 377888889998 999999999999999999864 23 345679999999
Q ss_pred ------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHH
Q psy9101 134 ------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVA 177 (255)
Q Consensus 134 ------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~ 177 (255)
+..++.||.+|+.+..+ .+|+++|++|+++|||+| |++||+
T Consensus 100 ~~G~~~AIlaGD~Ll~~a~~ll~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L-~~~a~~ 176 (295)
T 3ipi_A 100 KFGPSGALLCGDYLIAKSIAFISPYGEKVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASL-FAISAS 176 (295)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHH-HHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHH-HHHHHH
Confidence 45689999999998764 378899999999999999 999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHhh
Q psy9101 178 LAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQR 243 (255)
Q Consensus 178 lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~~ 243 (255)
+|++++|+ +++..+.+++||.++|+||||+||++|++++++ |+|+.+||+|||++++++.
T Consensus 177 ~ga~lag~-~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~-----gkd~~~gk~Tlp~l~al~~ 236 (295)
T 3ipi_A 177 IGAYTGGA-EEELAERFSHFGNALGTAYQIVDDILEFLEVVE-----GKESKFTSETLPHIYMKST 236 (295)
T ss_dssp HHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----C-------CCHHHHHTTTS
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----CCCcccCcccHHHHHHHhc
Confidence 99999998 888899999999999999999999999998753 4678999999999999443
No 41
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.97 E-value=1.8e-31 Score=242.11 Aligned_cols=164 Identities=24% Similarity=0.303 Sum_probs=132.9
Q ss_pred hHHHHHHhhhhcc-hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-----------
Q psy9101 67 QYNKAISNNVYLG-TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV----------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~-~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll----------- 133 (255)
.++..|.+.+... ++.+.+++.|.+ +||||+||+++++++++++++ ++ .+..+|||+|++
T Consensus 23 ~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~----~~---~~~~~A~avEliH~asLiHDDip 95 (293)
T 2j1p_A 23 SVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGE----ES---LAMPAACAVEMIHTMSLIHDDLP 95 (293)
T ss_dssp HHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCC----HH---HHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHHCCch
Confidence 4556666666554 356888889998 899999999999999998753 32 356789999999
Q ss_pred ----------------------------------------H-----------------------HHhhcccchhcccCCC
Q psy9101 134 ----------------------------------------S-----------------------LKTSMGQSLDLSTAND 150 (255)
Q Consensus 134 ----------------------------------------~-----------------------~~~~~GQ~lDl~~~~~ 150 (255)
. .+++.||.+|+.+..+
T Consensus 96 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~ 175 (293)
T 2j1p_A 96 CMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGL 175 (293)
T ss_dssp TTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---C
T ss_pred hccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccC
Confidence 0 1478999999988653
Q ss_pred C-CCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHh
Q psy9101 151 L-SKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIE 229 (255)
Q Consensus 151 ~-~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~ 229 (255)
. ..++++.|..|+++|||+| |++||++|++++|+ +++..+.+++||.++|+||||+||++|+++++
T Consensus 176 ~~~~~~~~~y~~i~~~KTa~L-~~~a~~~ga~lag~-~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~----------- 242 (293)
T 2j1p_A 176 DLNNVGLEHLKFIHLHKTAAL-LEASAVLGGIIGGG-SDEEIERLRKFARCIGLLFQVVDDILDVTKSS----------- 242 (293)
T ss_dssp CHHHHHHHHHHHHHHHHTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCCHHHHHHHHHcccHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-----------
Confidence 1 1378899999999999999 99999999999998 88889999999999999999999999999874
Q ss_pred cCCchHHHHHHHhhCCHHHHHHH
Q psy9101 230 DGKCSWLAVVALQRATPAQRKLM 252 (255)
Q Consensus 230 ~gK~T~p~i~al~~a~~~~r~~l 252 (255)
|.|||++++++.+....++..
T Consensus 243 --K~T~p~l~gle~a~~~a~~~~ 263 (293)
T 2j1p_A 243 --KLTYPKLMGLEKSREFAEKLN 263 (293)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHHHHH
Confidence 999999999987765555443
No 42
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.97 E-value=9.3e-31 Score=236.97 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=127.1
Q ss_pred hHHHHHHhhhhc-chhhHHHHhhcccCCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 67 QYNKAISNNVYL-GTYFIVQVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 67 ~~~~~l~~~~~~-~~~~i~~a~~y~~~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
.+++.|.+.+.. .++.+.+++.|.+.||||+||+++++++++++++ ++ .+..+|+++|++
T Consensus 21 ~v~~~l~~~l~~~~~~~l~~~~~y~~~gGKrlRp~L~l~~~~~~g~~----~~---~~~~~A~avEliH~asLIHDDi~D 93 (289)
T 2azj_A 21 TIDRLIEQFLNSNRDWDLVDISSYILKDGKRFRGTLNMFFTVALGGD----IK---DSYGGALAIEILHSASLALCDIVD 93 (289)
T ss_dssp HHHHHHHHHHHHCSCTTHHHHHHHHHSCCCCHHHHHHHHHHHHTTCC----GG---GGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 355666666654 3667889999988899999999999999998753 22 245679999999
Q ss_pred --------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHH
Q psy9101 134 --------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163 (255)
Q Consensus 134 --------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~ 163 (255)
...|+.||.+|+.+ +++|++++
T Consensus 94 ~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i 165 (289)
T 2azj_A 94 LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVGALRDMYD--------NSDYIRTI 165 (289)
T ss_dssp TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHH
T ss_pred CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHH
Confidence 24578999999975 35799999
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
++|||+| |++||++|++++ + +++..+.+++||.++|+||||+||++|++++ || .|+.+||+|||+++
T Consensus 166 ~~KTa~L-~~~a~~~ga~la-~-~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K--~dl~~gk~Tlp~l~ 232 (289)
T 2azj_A 166 ELKTGSL-FKLSTVLSAYAS-K-HYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KV--EEIDGSAKQLFKYY 232 (289)
T ss_dssp HHHTHHH-HHHHHHHHHHHT-T-CGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CT--TTCCTTGGGGHHHH
T ss_pred HcchHHH-HHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CC--hhhhcCcccHHHHH
Confidence 9999999 999999999999 7 7888999999999999999999999999996 45 48899999999999
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.96 E-value=1.9e-30 Score=234.27 Aligned_cols=148 Identities=21% Similarity=0.229 Sum_probs=118.5
Q ss_pred hHHHHHHhhhhcc-hhhHHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-----------
Q psy9101 67 QYNKAISNNVYLG-TYFIVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV----------- 133 (255)
Q Consensus 67 ~~~~~l~~~~~~~-~~~i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll----------- 133 (255)
.++..|.+.+.+. ++.+.+++.|.+ .||||+||+++++++++++...... +.+..+|+|+|++
T Consensus 16 ~ve~~L~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~~~~~----~~~~~~A~aiEliH~aSLIHDDIm 91 (285)
T 4fp4_A 16 RVKARLNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMD----PRILEAAAIVELLHVVSLLQDDVM 91 (285)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGGGGGC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCCCCh----HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 5667788888877 899999999998 9999999999999999987510002 3456789999999
Q ss_pred --------------------------------------------------HHHhhcccchhcccCCCCCCCCHHHHHHHH
Q psy9101 134 --------------------------------------------------SLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163 (255)
Q Consensus 134 --------------------------------------------------~~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~ 163 (255)
+..++.||.+|+.+..+ . |+
T Consensus 92 D~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~ls~~~~~~~~GQ~lDl~~~~~-------~---~i 161 (285)
T 4fp4_A 92 DQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGADVVTYLADVAQRLSVGQALDLEGERD-------K---AA 161 (285)
T ss_dssp TTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCHH-------H---HH
T ss_pred CCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHhcccc-------c---hh
Confidence 55789999999987542 1 99
Q ss_pred hccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcC
Q psy9101 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDG 231 (255)
Q Consensus 164 ~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~g 231 (255)
++|||+| |++||++|++++|+ + +..+.+++||.++|+||||+||++|++++++..||.|+||+++
T Consensus 162 ~~KTg~L-f~~a~~lGa~lag~-~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~~~k~~g~DI~e~ 226 (285)
T 4fp4_A 162 EFKTAPL-IEAALVMPLVILGR-R-ELIETAKKLGTKLGILYQYSDDYSDENVERPETKSIANEIGRY 226 (285)
T ss_dssp HHHTHHH-HHHHHHHHHHHHTC-G-GGHHHHHHHHHHHHHHTTCC---------CHHHHHHHHHHHHH
T ss_pred hcCcHHH-HHHHHHHHHHHcCC-h-HHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCccHHHHHHH
Confidence 9999999 99999999999998 6 7889999999999999999999999999877544499999988
No 44
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.93 E-value=8.1e-26 Score=203.05 Aligned_cols=134 Identities=12% Similarity=0.078 Sum_probs=110.6
Q ss_pred HHHHHHhhhhcchhh-HHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 68 YNKAISNNVYLGTYF-IVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 68 ~~~~l~~~~~~~~~~-i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
++..|.+.+....|. +.+++.|.+ +||||+||+++++++++++++ .+ .+..+|||+|++
T Consensus 17 i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~----~~---~~~~~A~aiEliH~aSLIHDDI~D 89 (273)
T 3qkc_B 17 IESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGD----RS---DAMAAAAAVHLMHVAAYTHENLPL 89 (273)
T ss_dssp HHHHHHHHSCCCCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTTCC----GG---GTHHHHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHHcCccc
Confidence 345556666555554 888889998 999999999999999999764 22 345679999999
Q ss_pred -------------------------------------------------------H-----HHhhcccchhcccCCCCCC
Q psy9101 134 -------------------------------------------------------S-----LKTSMGQSLDLSTANDLSK 153 (255)
Q Consensus 134 -------------------------------------------------------~-----~~~~~GQ~lDl~~~~~~~~ 153 (255)
. .+++.||.+|+.+.. .
T Consensus 90 ~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~---~ 166 (273)
T 3qkc_B 90 TDGPMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQ---L 166 (273)
T ss_dssp TTBCSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCCS---S
T ss_pred CccCCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC---C
Confidence 0 246899999998843 2
Q ss_pred CCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 154 FTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 154 ~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
++.+.|..|+++|||+| |++||++|++++|+ +++..+.+++||.++|++|||+||+++
T Consensus 167 ~~~eyl~~I~~~KTa~L-~~~a~~lGailaga-~~~~~~~l~~~G~~lGlaFQI~DD~~~ 224 (273)
T 3qkc_B 167 NDLELIEYVCKKKEGTL-HACGAACGAILGGC-DEDKIEKLRRFGLYVGTVQGLLGKNRS 224 (273)
T ss_dssp CCHHHHHHHHHHTHHHH-HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56655556779999999 99999999999998 888999999999999999999999985
No 45
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=99.93 E-value=1.3e-25 Score=201.90 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=114.0
Q ss_pred HHHHHHhhhhcchhh-HHHHhhccc-CCCCccchHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH------------
Q psy9101 68 YNKAISNNVYLGTYF-IVQVLQYNV-PSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV------------ 133 (255)
Q Consensus 68 ~~~~l~~~~~~~~~~-i~~a~~y~~-~gGKr~Rpll~lla~~~l~~~~~~~~~~~~~a~~lA~avEll------------ 133 (255)
+++.|.+.+...+|. +.+++.|.+ +||||+||+++++++++++++ .+ .+..+|+++|++
T Consensus 12 ie~~L~~~l~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~----~~---~~~~~A~aiEliH~aSLIHDDI~~ 84 (274)
T 3kra_B 12 IERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGD----RS---QAMAAAAAIHLVHAAAYVHEHLPL 84 (274)
T ss_dssp HHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCC----GG---GGHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHHHHHHHHHcCCcc
Confidence 345556666655555 888889998 999999999999999999764 22 345679999999
Q ss_pred -----------------------------------------H----------------------HHhhcccchhcccCCC
Q psy9101 134 -----------------------------------------S----------------------LKTSMGQSLDLSTAND 150 (255)
Q Consensus 134 -----------------------------------------~----------------------~~~~~GQ~lDl~~~~~ 150 (255)
. .+++.||.+|+.+..+
T Consensus 85 dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~ 164 (274)
T 3kra_B 85 TDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDG 164 (274)
T ss_dssp SSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTT
T ss_pred cCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCC
Confidence 0 2368999999998765
Q ss_pred CCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9101 151 LSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY 211 (255)
Q Consensus 151 ~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~ 211 (255)
.+|++.|.+|+++|||+| |++||++|++++|+ +++..+.+++||.++|++|||+||.
T Consensus 165 --~~t~~~y~~~i~~KTa~L-~~~a~~lGailaga-~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 165 --NTSLDFIEYVCKKKYGEM-HACGAACGAILGGA-AEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp --SSCHHHHHHHHHHHTHHH-HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999 99999999999998 8888999999999999999999998
No 46
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=88.79 E-value=6.5 Score=34.40 Aligned_cols=82 Identities=11% Similarity=-0.017 Sum_probs=54.0
Q ss_pred HHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy9101 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214 (255)
Q Consensus 135 ~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~ 214 (255)
..++.|...|+.... -.|.+++..-+.+=-|.. ..+.+. ++ |..+. ......+.++|.|||+.|=+.|+
T Consensus 111 ~~li~g~~~Dl~~~~---~~t~~dL~~Yc~~vAg~V-G~l~~~---l~-g~~~~---~~~~~~A~~lG~AlQltNilRDv 179 (293)
T 3acx_A 111 YNLIDTVYKDQHFTM---FETDAELFGYCYGVAGTV-GEVLTP---IL-SDHET---HQTYDVARRLGESLQLINILRDV 179 (293)
T ss_dssp HHHHHHHHHHTTCCC---CSSHHHHHHHHHHHTHHH-HHHHHH---HH-CSSCC---HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCC---CCCHHHHHHHHHHhhHHH-HHHHHH---Hh-CCCCc---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778887543 247788777666655555 433333 22 33231 23667999999999999977775
Q ss_pred CCCCCccCCccchHhcCCchHHH
Q psy9101 215 FGTPDVTGKIGTDIEDGKCSWLA 237 (255)
Q Consensus 215 ~gd~~~~GK~g~Di~~gK~T~p~ 237 (255)
+.|...|++-||.
T Consensus 180 ----------~eD~~~gR~YLP~ 192 (293)
T 3acx_A 180 ----------GEDFENERIYFSK 192 (293)
T ss_dssp ----------HHHHHTTCCCSCH
T ss_pred ----------HHHHhCCcEEeCH
Confidence 4678888888886
No 47
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=80.71 E-value=2.4 Score=37.41 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=49.7
Q ss_pred HHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy9101 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214 (255)
Q Consensus 135 ~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~ 214 (255)
..++.|..+|+.... -.|.+++..-+.+=.|.. ..+.+ .+-|..+++ ...++.++|.|||+.|=+.|+
T Consensus 107 ~~li~g~~~Dl~~~~---~~t~~dL~~Y~~~vAg~V-G~m~~----~i~g~~~~~----~~~~A~~lG~AlQltNilRDv 174 (294)
T 4hd1_A 107 LRLIEANRRDQRKHT---YDTWEDLRDYCRYSADPV-GRLVL----GIFGCLDDE----RARLSDATCTALQVANHMQDI 174 (294)
T ss_dssp HHHHHHHHHHHHCSB---CCSHHHHHHHHHHHTHHH-HHHHH----HHTTCCSHH----HHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhccccCC---CCCHHHHHHHHHhccchH-HHHHH----HHhCCCCHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 445678888887654 246777766555444443 32222 223442443 446788999999999988885
Q ss_pred CCCCCccCCccchHhcCCchHHH
Q psy9101 215 FGTPDVTGKIGTDIEDGKCSWLA 237 (255)
Q Consensus 215 ~gd~~~~GK~g~Di~~gK~T~p~ 237 (255)
+.|...|++-+|.
T Consensus 175 ----------~eD~~~gR~YlP~ 187 (294)
T 4hd1_A 175 ----------DRDLALGRIYVPR 187 (294)
T ss_dssp ----------HHHHHTTCBCSCH
T ss_pred ----------hhhhccCceeCCH
Confidence 3556666666654
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=77.43 E-value=4.3 Score=36.72 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=52.8
Q ss_pred HHhhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy9101 135 LKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDC 214 (255)
Q Consensus 135 ~~~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~ 214 (255)
..+..|-..|+... -.|.+++..-+.+=-|.. ..+.+.+-..-... ++ ........+.++|.|||+.|=+.|+
T Consensus 121 ~~m~~gm~~dl~~~----~~t~~~L~~Yc~~vAg~V-G~l~~~l~~~~~~~-~~-~~~~~~~~A~~lG~AlQltNilRDv 193 (343)
T 3vj8_A 121 RRMGIGMAEFLDKH----VTSEQEWDKYCHYVAGLV-GIGLSRLFSASEFE-DP-LVGEDTERANSMGLFLQKTNIIRDY 193 (343)
T ss_dssp HHHHHHHHHGGGCC----CCSHHHHHHHHHHHTHHH-HHHHHHHHHHHTSS-CH-HHHHCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHhccCC----CCCHHHHHHHHHhCcHHH-HHHHHHHhCCCCCc-cc-hhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34455656676522 247788877676666665 55555544332221 22 2345678899999999999987775
Q ss_pred CCCCCccCCccchHhcCCchHHH
Q psy9101 215 FGTPDVTGKIGTDIEDGKCSWLA 237 (255)
Q Consensus 215 ~gd~~~~GK~g~Di~~gK~T~p~ 237 (255)
+.|...|++=||.
T Consensus 194 ----------~eD~~~gR~YlP~ 206 (343)
T 3vj8_A 194 ----------LEDQQGGREFWPQ 206 (343)
T ss_dssp ----------HHHHHTTCCCSCH
T ss_pred ----------HHHHhCCCeeCCH
Confidence 3455556655554
No 49
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=56.25 E-value=17 Score=32.64 Aligned_cols=55 Identities=22% Similarity=0.154 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHHh
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVALQ 242 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al~ 242 (255)
+.+++.+.|. +.+....+...-+-+=.++=|.||+.| ++|.+.|++|+-..++..
T Consensus 55 ~l~~~~~~g~-~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~G~~ 109 (334)
T 3rmg_A 55 VLLVARLYGA-VTPATLHAAVSLELLHTASLVHDDVVD-----------ESTERRGQLSVNAIFNNK 109 (334)
T ss_dssp HHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHH
T ss_pred HHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHcCccC-----------CCCCcCCCccHHHhcChH
Confidence 3344444454 344555566677888899999999988 357788888888777643
No 50
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=42.93 E-value=16 Score=32.92 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 175 PVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 175 ~~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
-+.+++.+.|. +.+....+...-+-+=.++-|.||+.| ++|.+.|++|+-..+
T Consensus 60 l~l~~~~~~g~-~~~~~~~~A~aiEliH~asLiHDDI~D-----------~s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 60 LTLAAARLVGY-GGPFHVHLAATVEFIHTATLLHDDVVD-----------ESRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHHHHHTTC-CCSHHHHHHHHHHHHHHHHHHHHHC-----------------CTTSCCHHHHS
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHcCccC-----------CCCCcCCCccHHHhc
Confidence 34445555555 334455566677788889999999988 245667777765544
No 51
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=40.91 E-value=28 Score=30.67 Aligned_cols=49 Identities=10% Similarity=-0.015 Sum_probs=32.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 180 MHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 180 a~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
+.+.|. +++....+...-+-+=.+.=|.||+.|= +|.+.|++|+=..++
T Consensus 37 ~~~~~~-~~~~~~~~A~avEliH~asLiHDDi~D~-----------s~~RRG~pt~h~~~G 85 (301)
T 2q80_A 37 NHWLKV-PEDKLQIIIEVTEMLHNASLLIDDIEDN-----------SKLRRGFPVAHSIYG 85 (301)
T ss_dssp HHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CSEETTEECHHHHHC
T ss_pred HHHhCC-CHHHHHHHHHHHHHHHHHHHHHccccCC-----------CCCCCCCcchhhccC
Confidence 344455 5555556777777788899999999982 455666666554443
No 52
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=40.40 E-value=31 Score=30.27 Aligned_cols=54 Identities=11% Similarity=-0.063 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHH
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVAL 241 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al 241 (255)
+.+++.+.|. +++....+...-+-+=.++=|.||+.| .+|.+.|++|+=..++.
T Consensus 57 ~l~~~~~~g~-~~~~~~~~A~avEliH~asLIHDDi~D-----------~s~~RRG~pt~h~~~G~ 110 (289)
T 2azj_A 57 NMFFTVALGG-DIKDSYGGALAIEILHSASLALCDIVD-----------LDATRRGDKAAWVVYGN 110 (289)
T ss_dssp HHHHHHHTTC-CGGGGHHHHHHHHHHHHHHHHHHHHHT-----------TCCBSSSSBCHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhCCCCC-----------CCCCCCCCccHHHhcCh
Confidence 3344445454 444445566666777788899999988 24667778777666554
No 53
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=35.70 E-value=29 Score=30.90 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
+.+++.+.|. +.+..-.+...-+-+=.++=|.||+.|
T Consensus 47 ~l~~~~~~~~-~~~~~~~~A~avEliH~asLihDDi~D 83 (330)
T 1wmw_A 47 TVYSALAHGA-PLEAGLEAATALELFQNWVLVHDDIED 83 (330)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 4445555565 555555666777778889999999998
No 54
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=35.49 E-value=1.2e+02 Score=25.99 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHhccccchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy9101 153 KFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGM-QDVEVHRQARTLLLEMGHFFQVQDDYLDCFG 216 (255)
Q Consensus 153 ~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~-~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~g 216 (255)
.+|.++|..+-+.-.|.. +. +.+.....|. -+++..+...++-...+...-+.||+..+..
T Consensus 165 ~Ps~eeYl~~r~~s~g~~-~~--~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~k 226 (320)
T 3bny_A 165 PMGLGGYLEYRERDVGKE-LL--AALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEK 226 (320)
T ss_dssp CCCHHHHHHHHHTCHHHH-HH--HHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhhcccHH-HH--HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence 479999998866666544 22 2222222332 2566667888999999999999999999853
No 55
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=34.08 E-value=35 Score=30.52 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=23.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 180 MHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 180 a~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
+.+.|. +++....+...-+-+=.++=|.||+.|
T Consensus 52 ~~~~~~-~~~~~~~~A~avEliH~asLiHDDI~D 84 (340)
T 2e8v_A 52 NRVMNL-PKDQLAIVSQIVELLHNSSLLIDDIED 84 (340)
T ss_dssp HHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCC-CHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 344455 555555666677777788899999988
No 56
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=32.83 E-value=2.2e+02 Score=23.86 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHhccccchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcC
Q psy9101 153 KFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGM-QDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDG 231 (255)
Q Consensus 153 ~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~-~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~g 231 (255)
.+|.++|+.+-+.-.|.. + .+.+.-...|. -+++..+.+.++-...+...-+.||+..+....+ -|..+.-....
T Consensus 151 ~Ps~eeYl~~r~~s~g~~-~--~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~-~g~~~h~~~~~ 226 (300)
T 1di1_A 151 IHELGHYLEYREKDVGKA-L--LSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEEE-ASRTGHKEGAF 226 (300)
T ss_dssp CCSHHHHHHHHHTCHHHH-H--HHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCC-C----------
T ss_pred CCCHHHHHHHHhhhccHH-H--HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-hhccccccccc
Confidence 479999999755555543 2 22222222232 2566677888999999999999999999865321 12211000001
Q ss_pred CchHHHHHHHhh
Q psy9101 232 KCSWLAVVALQR 243 (255)
Q Consensus 232 K~T~p~i~al~~ 243 (255)
..|.+.++.-+.
T Consensus 227 ~~n~V~~~m~~~ 238 (300)
T 1di1_A 227 LCSAVKVLAEES 238 (300)
T ss_dssp CCCHHHHHHHHH
T ss_pred cchhHHHHHHHc
Confidence 456777666543
No 57
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=32.78 E-value=31 Score=31.30 Aligned_cols=53 Identities=19% Similarity=-0.015 Sum_probs=27.4
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHHH
Q psy9101 177 ALAMHMAG-MQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVAL 241 (255)
Q Consensus 177 ~lga~lag-~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~al 241 (255)
.+++.+.| . +.+....+...-+-|=.+.=|.||+.| .+|++.|++|+-..++.
T Consensus 83 ll~~~~~~~~-~~~~~~~~A~avEliH~asLIHDDImD-----------~s~~RRG~pt~h~~~G~ 136 (360)
T 3lmd_A 83 LLASEFGEKP-LSENVIKAAVVVEITHLATLYHDDVMD-----------EASMRRGVPSANARWDN 136 (360)
T ss_dssp HHHHTTSSST-TCHHHHHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHH
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHhCCCcC-----------CCCCCCCCCcHHhhcCh
Confidence 33444445 3 334455566677778889999999988 25677788777665543
No 58
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=32.51 E-value=22 Score=31.82 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=31.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 180 MHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 180 a~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
+.+.|. +++....+...-+-+=.++-|.||+.| . +|.+.|++|+=..++
T Consensus 58 ~~~~g~-~~~~~~~~A~avEliH~asLiHDDi~D--~---------s~~RRG~pt~h~~~G 106 (342)
T 1wy0_A 58 TEAVGG-DPLRAIYPAVAIELIHNYSLVHDDIMD--M---------DETRRGKPTVHRIWG 106 (342)
T ss_dssp TTTTTS-CGGGGHHHHHHHHHHHHHHHHHHHHHH--T---------CCCSTTSCCHHHHHC
T ss_pred HHHcCC-CHHHHHHHHHHHHHHHHHHHHHCCccc--C---------CCCCCCCCccccccC
Confidence 333344 334445566667777788999999998 2 455666666655444
No 59
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=32.39 E-value=27 Score=31.49 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=33.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
+.+++.+.|. +.+....+...-+-|=.++=|.||+.|- +|.+.|++|+=..+
T Consensus 62 ~ll~~~~~g~-~~~~~~~~A~avEliH~asLiHDDI~D~-----------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 62 AVLSAEVTGA-APEVGVPGAVAVELVHNFSLLHDDLMDG-----------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHHHTTTC-CGGGGHHHHHHHHHHHHHHHHHHHHHHT-----------CCEETTEECHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHcCCCCC-----------CCCCCCCccHHHhc
Confidence 3444555555 4455556667777788899999999992 34556666654443
No 60
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=31.87 E-value=22 Score=32.18 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=32.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 177 ALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 177 ~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
.+++.+.|. +.+....+...-+-|=.++-|.||+.| . +|.+.|++|+=..++
T Consensus 54 l~~~~~~g~-~~~~~~~~A~aiEliH~asLiHDDI~D--~---------s~~RRG~pt~h~~~G 105 (358)
T 4dhd_A 54 LAAAEAVSG-QWRPALPAAAIVELIHNYSLIYDDIID--R---------GDVRRGLPTVRKAFG 105 (358)
T ss_dssp HHHHHHHHS-CCGGGHHHHHHHHHHHHHHHHHHHHHT--T---------CCEETTEECHHHHHC
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHCcccc--C---------CCCcCCCccHHHhcC
Confidence 334444343 334445566677788899999999988 2 455666666654443
No 61
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=31.51 E-value=34 Score=30.56 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=34.0
Q ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 178 LAMHMAG-MQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 178 lga~lag-~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
+++.+++ . +.+....+...-+-+=.++=|.||+.| .+|.+.|++|+=..++
T Consensus 65 ~~~~~g~~~-~~~~~~~~A~aiEliH~asLiHDDi~D-----------~s~~RRG~pt~h~~~G 116 (334)
T 3pko_A 65 LFSTFGNAA-TPAQLQAGAAAIEILHVGTLIHDDVID-----------DSPTRRGVRTIQMTYG 116 (334)
T ss_dssp HHHTTCSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH-----------TCSEETTEECHHHHHC
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHhCccCC-----------CCCCcCCCccHHHHcC
Confidence 3344444 3 556666677777888899999999988 2456667777654443
No 62
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=29.94 E-value=54 Score=28.61 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=34.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 177 ALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 177 ~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
.+++.+.|. +++....+...-+-+=.+.=|.||+ .| .+|.+.|++|+=..++
T Consensus 55 l~~~~~~g~-~~~~~~~~A~avEliH~asLIHDDIP~~D-----------~s~~RRG~pt~h~~~G 108 (284)
T 2ftz_A 55 LTLGEDLGV-EEEXLLDVAVAVELFHTASLIHDDLPPID-----------NADFRRGXPSCHRTYG 108 (284)
T ss_dssp HHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHSTTTT-----------CCSEETTEECHHHHHC
T ss_pred HHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHhCCchhcC-----------CCCCCCCCccHHhhcC
Confidence 334444455 5555555666777778889999999 98 2456667777655553
No 63
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=29.17 E-value=22 Score=31.30 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 189 EVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 189 ~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
+....+...-+-|=.+.=|.||+.|
T Consensus 62 ~~~~~~A~avEliH~asLIHDDi~D 86 (295)
T 3ipi_A 62 SRSLNAALAVEMMHSASLIHDDLLD 86 (295)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 4445566667778889999999998
No 64
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=29.07 E-value=45 Score=29.31 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHH
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLA 237 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~ 237 (255)
+.+++.+.|. +.+....+...-+-|=.++=|.||+ .| . +|++.|++|+=.
T Consensus 49 ~l~~~~~~g~-~~~~~~~~A~avEliH~asLIHDDip~mD--~---------s~~RRG~pt~h~ 100 (297)
T 3m0g_A 49 AIESAAIHGI-SMAQAMPAALAVEALHAYSLVHDDMPCMD--N---------DDLRRGLPTVHK 100 (297)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHTSTTTT--C---------CSEETTEECHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhcCccccC--C---------CCccCCCCCchh
Confidence 3344455565 5666666777778888899999999 77 2 345556655533
No 65
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=28.56 E-value=26 Score=31.08 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
+.+++.+.|. +.+....+...-+-+=.+.-|.||+.| + +|.+.|++|+=..+
T Consensus 52 ~l~~~~~~g~-~~~~~~~~A~avEliH~asLiHDDi~D--~---------s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 52 VLLSGFLNDT-QKDDLIRTAVSLELVHMASLVHDDYID--N---------SDMRRGNTSVHIAF 103 (325)
T ss_dssp HHHHHTTSSC-CCHHHHHHHHHHHHHHHHHHHHHHHHH--T---------CCEETTEECHHHHT
T ss_pred HHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHhCcccc--C---------CCCCCCCCCccccc
Confidence 3344444454 334445566666777788999999998 2 34555665554433
No 66
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=27.01 E-value=51 Score=29.22 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=32.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHH
Q psy9101 178 LAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLA 237 (255)
Q Consensus 178 lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~ 237 (255)
+++.+.|. +.+....+...-+-|=.+.=|.||+ .| . +|++.|++|+-.
T Consensus 60 ~~~~~~g~-~~~~~~~~A~aiEliH~aSLIHDDip~mD--~---------~~~RRG~pt~h~ 109 (313)
T 3lom_A 60 LAGDLIDV-DQGVLDIIAAALELTHCYSLIHDDLPAMD--N---------DDLRRGKPSCHK 109 (313)
T ss_dssp HHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHSTTTT--C---------CSEETTEECHHH
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhCCccccc--C---------CCccCCCCCchh
Confidence 34445555 5666666777777888899999999 77 2 355566665533
No 67
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=26.90 E-value=67 Score=29.21 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 188 VEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 188 ~~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
.+..-.+...-+-|=.+.=|.||+.| .+|++.|++|+-..+
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD-----------~s~~RRG~pt~h~~f 127 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID-----------SSDTRRGAPTVHRAV 127 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----------C--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC-----------CCCCCCCCcchhHHH
Confidence 44555566666777788999999988 256777777776653
No 68
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=26.49 E-value=67 Score=28.06 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
+.+++.+.|. +.+....+...-+-|=.+.=|.||+ .| . +|.+.|++|+=..++
T Consensus 52 ~l~~~~~~g~-~~~~~~~~A~avEliH~asLiHDDiP~~D--~---------s~~RRG~pt~h~~~G 106 (299)
T 1rqj_A 52 VYATGHMFGV-STNTLDAPAAAVECIHAYSLIHDDLPAMD--D---------DDLRRGLPTCHVKFG 106 (299)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHTSTTTT--C---------CCEETTEECHHHHHC
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHhHHHhCCChhhc--C---------CCCCCCCCChhhhcC
Confidence 3444555565 5555555666667777888999999 98 2 345556665544443
No 69
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=26.11 E-value=32 Score=30.93 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~lD 213 (255)
+.+++.+.|. +.+....+...-+-|=.++=|.||+.|
T Consensus 73 ~ll~~~~~g~-~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 73 TVAAARLAGA-DNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHHHTTC-CSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 4445555555 444455666777788889999999988
No 70
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=25.96 E-value=41 Score=29.69 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 177 ALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 177 ~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
.+++.+.|...++....+...-+-+=.++-|.||+ .| . +|++.|++|+-..++
T Consensus 59 l~~~~~~g~~~~~~~~~~A~avEliH~asLIHDDIP~mD--~---------s~~RRG~pt~h~~~G 113 (302)
T 3p8l_A 59 LTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDDLPAMD--D---------DDLRRGKPTNHKVFG 113 (302)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHSTTTT--C---------CSEETTEECHHHHHC
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHCCchhcc--C---------CCccCCCcchhhhcC
Confidence 33444444423324455666777788899999999 88 2 455666666555443
No 71
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=25.78 E-value=41 Score=29.66 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
+.+.+.+.|. +.+....+...-+-+=.++=|.||+ +| . +|++.|++|+=..+
T Consensus 58 ~l~~~~~~g~-~~~~~~~~A~aiEliH~asLIHDDIp~mD--~---------s~~RRG~pt~h~~~ 111 (302)
T 3p8r_A 58 VYITGQMLGC-ELSDLDTPASAVECIHAYSLIHDDLPAMD--D---------DELRRGKPTCHIQF 111 (302)
T ss_dssp HHHHHHTTTC-CGGGTHHHHHHHHHHHHHHHHHHTCHHHH--C---------CC------------
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHCCccccc--C---------CCcCCCCcchhhhc
Confidence 3344455555 5555556666777888899999999 88 2 45566666554333
No 72
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=25.42 E-value=73 Score=27.75 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=31.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 178 LAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 178 lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
+++.+.|. +++....+...-+-+=.+.=|.||+ .| . +|.+.|++|+=..+
T Consensus 62 ~~~~~~g~-~~~~~~~~A~avEliH~asLiHDDip~mD--~---------s~~RRG~pt~h~~~ 113 (293)
T 2j1p_A 62 AACELVGG-EESLAMPAACAVEMIHTMSLIHDDLPCMD--N---------DDLRRGKPTNHKVY 113 (293)
T ss_dssp HHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHTSTTTT--C---------CSEETTEECHHHHH
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHCCchhcc--C---------CCCCCCCCchhhhc
Confidence 34444455 5555455666666777888999998 88 2 45566666655544
No 73
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=25.21 E-value=58 Score=28.96 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 178 LAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 178 lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
+.+.+.|. +.+....+...-+-|=.+.=|.||+ .| .+|++.|++|+-..+
T Consensus 55 ~~~~~~g~-~~~~~~~~A~avEliH~aSLIHDDip~mD-----------~s~~RRG~pt~h~~~ 106 (317)
T 4f62_A 55 ASAQLVGD-ISSLTDASAAALESIHAYSLIHDDLPAMD-----------NDELRRGKPTCHIQF 106 (317)
T ss_dssp HHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHSTTSC-----------C-------CCHHHHS
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHCCccccc-----------CCCCcCCCccHHhhc
Confidence 34444454 4455556667777788899999999 77 245666666655443
No 74
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=25.12 E-value=58 Score=28.53 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 190 VHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 190 ~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
....+...-+-+=.+.=|.||+.| . +|.+.|++|+=..++
T Consensus 62 ~~~~~A~avEliH~asLiHDDi~D--~---------s~~RRG~pt~h~~~G 101 (299)
T 1v4e_A 62 DAISSLAALELVHLASLLHDDVID--G---------ARFRRGKETINFMYG 101 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--T---------CSEETTEECHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCC--C---------CCCCCCCCchhhhcC
Confidence 344566666677788899999988 2 456666666655544
No 75
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=24.82 E-value=41 Score=30.04 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
+.+++.+.|. +.+....+...-+-|=.+.-|.||+ .| .+|++.|++|+-..+
T Consensus 82 ~l~~~~~~g~-~~~~~~~~A~aiEliH~aSLIHDDIP~mD-----------~s~~RRG~pt~h~~~ 135 (324)
T 3uca_A 82 MLLSYYIYKS-DYKKILTPAMAIEMIHTYSLIHDDLPCMD-----------NDDLRRGKPTNHKVF 135 (324)
T ss_dssp HHHHHHTTCS-CGGGGHHHHHHHHHHHHHHHHHHTSTTTT-----------CCSEETTEECHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHCCchhcc-----------CCCCCCCCccHHHhc
Confidence 3344444555 4455556666677888899999999 88 245666776665544
No 76
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=24.68 E-value=3.3e+02 Score=23.27 Aligned_cols=94 Identities=11% Similarity=-0.003 Sum_probs=50.6
Q ss_pred hhcccchhcccCCCCCCC-CHHHHHHHHhccccchhHHHHHHHHHHHhCC-CCHHHH--HHHHHHHHHHHHHHHHHhhhh
Q psy9101 137 TSMGQSLDLSTANDLSKF-TMDRYEAIVKYKTAFYSFQLPVALAMHMAGM-QDVEVH--RQARTLLLEMGHFFQVQDDYL 212 (255)
Q Consensus 137 ~~~GQ~lDl~~~~~~~~~-t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~-~~~~~~--~~l~~~g~~iGiaFQI~DD~l 212 (255)
.+.+-..+..+...-..+ |.++|.++-+.=.|.. . .+.+..+..|. -++... ..+.++-...+...-+.||+.
T Consensus 146 ~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~-~--~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~ 222 (337)
T 1ps1_A 146 YFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQ-P--TVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIA 222 (337)
T ss_dssp HHHHHHHHHTTC-------CHHHHHHHHHHHTCHH-H--HHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchh-h--HHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHh
Confidence 344444444443322247 8999998754444433 2 22223333332 133332 256678888999999999999
Q ss_pred ccCCCCCccCCccchHhcCC-chHHHHHHHhh
Q psy9101 213 DCFGTPDVTGKIGTDIEDGK-CSWLAVVALQR 243 (255)
Q Consensus 213 D~~gd~~~~GK~g~Di~~gK-~T~p~i~al~~ 243 (255)
.+.. +..+|. .|.+.++.-+.
T Consensus 223 S~~k----------E~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 223 SLEK----------EEARGEQNNMVMILRREH 244 (337)
T ss_dssp THHH----------HHHTTCCCSHHHHHHHHH
T ss_pred hHHH----------HHhcCCcchHHHHHHHHc
Confidence 9853 223343 57766665443
No 77
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=24.12 E-value=1.9e+02 Score=25.81 Aligned_cols=93 Identities=11% Similarity=0.016 Sum_probs=52.3
Q ss_pred hhcccchhcccCCCCCCCCHHHHHHHHhccccchhHHHHHHHHHHHhCC-CCHHHH--HHHHHHHHHHHHHHHHHhhhhc
Q psy9101 137 TSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGM-QDVEVH--RQARTLLLEMGHFFQVQDDYLD 213 (255)
Q Consensus 137 ~~~GQ~lDl~~~~~~~~~t~~~y~~i~~~KTa~Ltf~~~~~lga~lag~-~~~~~~--~~l~~~g~~iGiaFQI~DD~lD 213 (255)
++.+-..+..+...-..+|.++|+++-+.-.|.. .. +.+..+..|. .+++.. ..+.++-...+...-+.||+..
T Consensus 189 ~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~-~~--~~l~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S 265 (382)
T 3kb9_A 189 VIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHW-IW--TDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCS 265 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHH-HH--HHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHH-HH--HHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444432111379999999855544443 22 2222222332 133333 2577788899999999999999
Q ss_pred cCCCCCccCCccchHhcCC-chHHHHHHHh
Q psy9101 214 CFGTPDVTGKIGTDIEDGK-CSWLAVVALQ 242 (255)
Q Consensus 214 ~~gd~~~~GK~g~Di~~gK-~T~p~i~al~ 242 (255)
+.. +..+|. .|.+.++.-+
T Consensus 266 ~~k----------E~~~G~~~N~V~~~m~~ 285 (382)
T 3kb9_A 266 LPK----------EIAGDEVHNLGISLITH 285 (382)
T ss_dssp HHH----------HHHTTCCCSHHHHHHHH
T ss_pred HHH----------HHhcCCcccHHHHHHHc
Confidence 853 223343 3777766543
No 78
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=22.86 E-value=51 Score=29.22 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 192 RQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 192 ~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
..+...-+-|=.+.=|.||+ .| . +|++.|++|+=..++
T Consensus 73 ~~~A~aiEliH~aSLIHDDiP~mD--~---------s~~RRG~pt~h~~~G 112 (309)
T 3pde_A 73 WRPVMALELLHTYSLIHDDLPAMD--N---------DALRRGEPTNHVKFG 112 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTT--C---------CSEETTEECHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHCCchhcc--C---------CCCCCCCcchhhhcC
Confidence 45566667777899999999 88 2 456666666555443
No 79
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=21.95 E-value=1.3e+02 Score=26.36 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccCCccchHhcCCchHHHHHH
Q psy9101 189 EVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGKIGTDIEDGKCSWLAVVA 240 (255)
Q Consensus 189 ~~~~~l~~~g~~iGiaFQI~DD~lD~~gd~~~~GK~g~Di~~gK~T~p~i~a 240 (255)
+....+...-+-+=.+.-|.||+.| . +|.+.|++|+=..++
T Consensus 68 ~~~~~~A~aiEliH~aSLIHDDImD--~---------s~~RRG~Pt~h~~~G 108 (285)
T 4fp4_A 68 PRILEAAAIVELLHVVSLLQDDVMD--Q---------HDQRRGIKTPRAMYG 108 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--T---------CSBSSSSBCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC--C---------CCCCCCCCcHHHhcC
Confidence 3444566677778889999999988 2 455666666655543
No 80
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=21.53 E-value=61 Score=28.68 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHH
Q psy9101 189 EVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAV 238 (255)
Q Consensus 189 ~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i 238 (255)
+....+...-+-|=.++=|.||+ .| . +|++.|++|+=..
T Consensus 74 ~~~~~~A~aiEliH~aSLIHDDIp~mD--~---------s~~RRG~pt~h~~ 114 (311)
T 3llw_A 74 TEYFKIALSIECLHTYSLIHDDLPCMD--N---------AALRRNHPTLHAK 114 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTT--C---------CSEETTEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCccccC--C---------CcccCCCCchhhh
Confidence 44445555666777889999999 88 2 4556666655443
No 81
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=21.47 E-value=53 Score=28.97 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=32.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHH
Q psy9101 176 VALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAV 238 (255)
Q Consensus 176 ~~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i 238 (255)
+.+++.+.|. +.+....+...-+-|=.++=|.||+ +| . +|++.|++|+-..
T Consensus 52 ~l~~~~~~g~-~~~~~~~~A~aiEliH~asLIHDDip~mD--~---------s~~RRG~pt~h~~ 104 (304)
T 3lsn_A 52 AYAACEALGG-KPEQANGAACAVELIHAYSLVHDDLPAMD--D---------DDLRRGQPTTHKA 104 (304)
T ss_dssp HHHHHHHTTC-CGGGGHHHHHHHHHHHHHHHHHHTSTTTT--C---------CSEETTEECHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHCCccccc--C---------CCccCCCCchHhh
Confidence 3344445555 4555556666777788899999999 78 2 3455566655443
No 82
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=21.40 E-value=58 Score=28.54 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=32.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCccCCccchHhcCCchHHHHH
Q psy9101 177 ALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LDCFGTPDVTGKIGTDIEDGKCSWLAVV 239 (255)
Q Consensus 177 ~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD~~gd~~~~GK~g~Di~~gK~T~p~i~ 239 (255)
.+++.+.|. +++..-.+...-+-|=.+.-|.||+ .| . +|.+.|++|+=..+
T Consensus 51 l~~~~~~g~-~~~~~~~~A~avEliH~asLiHDDiP~~D--~---------s~~RRG~pt~h~~~ 103 (301)
T 1rtr_A 51 LLTLDSLNT-EYELGMKSAIALEMIHTYSLIHDDLPAMD--N---------DDYRRGKLTNHKVY 103 (301)
T ss_dssp HHHHHHTTS-CGGGGHHHHHHHHHHHHHHHHHHHSTTTT--C---------CSEETTEECHHHHH
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhCCchhcc--C---------CCccCCCccHHhhc
Confidence 344444454 4444445666667777889999999 88 2 45566666665544
No 83
>1s2x_A CAG-Z; CAG pathogenicity island, type IV secretion system, unknown function; 1.90A {Helicobacter pylori} SCOP: a.47.3.1
Probab=21.28 E-value=45 Score=26.45 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=10.8
Q ss_pred HHHHHHHHHH--Hhhh
Q psy9101 198 LLEMGHFFQV--QDDY 211 (255)
Q Consensus 198 g~~iGiaFQI--~DD~ 211 (255)
|..+|+|||| +||+
T Consensus 149 gnmmgvafqilgiddf 164 (206)
T 1s2x_A 149 GNMMGVAFQILGIDDF 164 (206)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred CcchheeeeeecchhH
Confidence 6679999999 4554
No 84
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=20.41 E-value=81 Score=28.16 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhh--hc
Q psy9101 177 ALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDY--LD 213 (255)
Q Consensus 177 ~lga~lag~~~~~~~~~l~~~g~~iGiaFQI~DD~--lD 213 (255)
.+++.+.|. +++..-.+...-+-|=.+.=|.||+ .|
T Consensus 94 l~~~~~~g~-~~~~~~~~A~aiEliH~asLIHDDiPamD 131 (335)
T 2h8o_A 94 IESVALLGG-DAEAGLHVGAALECLHCYSLVHDDLPAMD 131 (335)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHCCchhcc
Confidence 334445555 5555555666677777888999999 88
Done!