RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9101
         (255 letters)



>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 348

 Score = 77.0 bits (188), Expect = 6e-17
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 22/109 (20%)

Query: 26  VLSKDESRDFMAIFPDLVRDLT-DAGRHSDIPDVTKWYAKVLQYNKAISNNVYLGTYFIV 84
           V+ + E  +F+  FP +VRDLT D   H ++ D      +VLQYN               
Sbjct: 3   VVVEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYN--------------- 47

Query: 85  QVLQYNVPSGKKNRGLALVVAYKMLAQPSELTPENLHLAQILGWCVEIV 133
                  P GK NRGL +V AY+ L+ P +   E+L  A  +GWC+E+ 
Sbjct: 48  ------APGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELF 90


>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Escherichia coli [TaxId:
           562]}
          Length = 299

 Score = 55.8 bits (133), Expect = 9e-10
 Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 9/156 (5%)

Query: 102 LVVAYKMLAQ---PSELTPENLHLAQILGWCVEIVSLKTSMGQSLDLSTANDLSKFTMDR 158
             +A+ +L+    P     + + +   L     I  +    GQ+LDL          +D 
Sbjct: 118 QTLAFSILSDADMPEVSDRDRISMISELASASGIAGM--CGGQALDLDAEGK--HVPLDA 173

Query: 159 YEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTP 218
            E I ++KT          L    AG +              +G  FQVQDD LD  G  
Sbjct: 174 LERIHRHKTGALIRAAV-RLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDT 232

Query: 219 DVTG-KIGTDIEDGKCSWLAVVALQRATPAQRKLME 253
              G + G D + GK ++ A++ L++A    R L++
Sbjct: 233 ATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268


>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 53.1 bits (126), Expect = 6e-09
 Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 153 KFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYL 212
             T + Y  IV+ K+          LA+ +  + + E+      L + +G  +Q+ DD +
Sbjct: 145 PITKEEYLRIVEGKSGAL-----FGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIM 199

Query: 213 DCFGTPDVTGKIGTDIEDGKCSWLAVVALQRATPAQRKLME 253
           D  G   +      D+++G  S+  V A+++   A++    
Sbjct: 200 DFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFEN 240


>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Staphylococcus aureus [TaxId:
           1280]}
          Length = 290

 Score = 44.3 bits (103), Expect = 6e-06
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 8/151 (5%)

Query: 105 AYKMLAQPSELTP-ENLHLAQILGWCVEIVSLKTSMGQSLDLSTANDLSKFTMDRYEAIV 163
           A+++++    LT    + + Q L      V +    GQ LD+ +        ++  E I 
Sbjct: 118 AFELISSDDRLTDEVKIKVLQRLSIASGHVGM--VGGQMLDMQSEGQ--PIDLETLEMIH 173

Query: 164 KYKTAFYSFQLPVALAMHMAGMQDVEVHRQARTLLLEMGHFFQVQDDYLDCFGTPDVTGK 223
           K KT        ++ A         + H ++      +G  FQ++DD LDC+G     GK
Sbjct: 174 KTKTGALLTFAVMSAADIANVDDTTKEHLES--YSYHLGMMFQIKDDLLDCYGDEAKLGK 231

Query: 224 -IGTDIEDGKCSWLAVVALQRATPAQRKLME 253
            +G+D+E+ K ++++++    A        +
Sbjct: 232 KVGSDLENNKSTYVSLLGKDGAEDKLTYHRD 262


>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 220

 Score = 25.7 bits (55), Expect = 5.1
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 108 MLAQPSELTPENLHLAQILGWCVEI 132
           MLA P+    E L   +   +  E 
Sbjct: 10  MLAHPTRGISEVLKRFEEAAFTCEY 34


>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 164

 Score = 25.1 bits (55), Expect = 7.0
 Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 21/83 (25%)

Query: 133 VSLKTSMGQSLDLSTANDLSKFTMDRYEAIVKYKTAFYSFQLPVALAMHMAGMQDVEVHR 192
           +S+K  +    D +       F   R E             LPV LA  M  +  +    
Sbjct: 15  LSIKQFLDFGRDNACEKTSYMFL--RKE-------------LPVRLANTMREVNLLPD-- 57

Query: 193 QARTLLLEMGHFFQVQDDYLDCF 215
                LL       VQ  Y+  F
Sbjct: 58  ----NLLNRPSVGLVQSWYMQSF 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 892,572
Number of extensions: 38659
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 10
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)