BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9102
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 110/165 (66%), Gaps = 8/165 (4%)
Query: 120 KDVLVEFY---APWCGHCTNYWRNRILKVAKGFAD---KFTFAISAKDDFQHELNEFGFD 173
KD+L+ +Y +NYWRNR++ VAK F D K FA++++ F HEL++FG +
Sbjct: 234 KDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLE 293
Query: 174 YVPSDKPLVFVRAEDGKKYAMKDEFSVEN--LESFLTKVVAGEVDPYIKSEPVPEDNSGP 231
+ P+V +R G+K+ M++EFS + LE FL G + Y+KSEP+PE N GP
Sbjct: 294 STAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGP 353
Query: 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
VKV VA+NFDE+V N KDVL+EFYAPWCGHCK L P Y+E+GEK
Sbjct: 354 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEK 398
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/137 (51%), Positives = 95/137 (69%), Gaps = 5/137 (3%)
Query: 5 GTNYWRNRILKVAKGFAD---KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK 61
G+NYWRNR++ VAK F D K FA++++ F HEL++FG + + P+V +R G+
Sbjct: 251 GSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGE 310
Query: 62 KYAMKDEFSVEN--LESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNE 119
K+ M++EFS + LE FL G + Y+KSEP+PE N GPVKV VA+NFDE+V N
Sbjct: 311 KFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNEN 370
Query: 120 KDVLVEFYAPWCGHCTN 136
KDVL+EFYAPWCGHC N
Sbjct: 371 KDVLIEFYAPWCGHCKN 387
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 251 VLVEFYAPWCGHCKKLTPVYEEVGEK 276
+LVEF+APWCGH K+L P YE +
Sbjct: 24 MLVEFFAPWCGHAKRLAPEYEAAATR 49
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 122 VLVEFYAPWCGHC 134
+LVEF+APWCGH
Sbjct: 24 MLVEFFAPWCGHA 36
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 52/64 (81%)
Query: 213 GEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEE 272
G + Y+KSEP+PE N GPVKV VA+NFDE+V N KDVL+EFYAPWCGHCK L P Y+E
Sbjct: 10 GNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKE 69
Query: 273 VGEK 276
+GEK
Sbjct: 70 LGEK 73
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 43/53 (81%)
Query: 84 GEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
G + Y+KSEP+PE N GPVKV VA+NFDE+V N KDVL+EFYAPWCGHC N
Sbjct: 10 GNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKN 62
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 153 FTFAISAKDDFQHELNEFGF--DYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKV 210
F F S D Q L FG + P+ + L+ + E K +E + E + F +
Sbjct: 170 FIFIDSDHTDNQRILEFFGLKKEECPAVR-LITLEEEMTKYKPESEELTAERITEFCHRF 228
Query: 211 VAGEVDPYIKSEPVPED-NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPV 269
+ G++ P++ S+ +PED + PVKV V KNF++V + +K+V VEFYAPWCGHCK+L P+
Sbjct: 229 LEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPI 288
Query: 270 YEEVGE 275
++++GE
Sbjct: 289 WDKLGE 294
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 13/135 (9%)
Query: 3 KTGTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGF--DYVPSDKPLVFVRAEDG 60
KT ++ +IL F F S D Q L FG + P+ + L+ + E
Sbjct: 158 KTAAESFKGKIL---------FIFIDSDHTDNQRILEFFGLKKEECPAVR-LITLEEEMT 207
Query: 61 KKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPED-NSGPVKVAVAKNFDEVVTNNE 119
K +E + E + F + + G++ P++ S+ +PED + PVKV V KNF++V + +
Sbjct: 208 KYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEK 267
Query: 120 KDVLVEFYAPWCGHC 134
K+V VEFYAPWCGHC
Sbjct: 268 KNVFVEFYAPWCGHC 282
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 5 GTNYWRNRILKVAKGFAD---KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK 61
G+NYWRNR+ VAK F D K FA++++ F HEL++FG + + P+V +R G+
Sbjct: 147 GSNYWRNRVXXVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGE 206
Query: 62 KYAMKDEFSVEN--LESFLTKVVAGEVDPYIKSEPVPEDNSG 101
K+ ++EFS + LE FL G + Y+KSEP+PE N G
Sbjct: 207 KFVXQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDG 248
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 120 KDVLVEFY---APWCGHCTNYWRNRILKVAKGFAD---KFTFAISAKDDFQHELNEFGFD 173
KD+L+ +Y +NYWRNR+ VAK F D K FA++++ F HEL++FG +
Sbjct: 130 KDLLIAYYDVDYEKNAKGSNYWRNRVXXVAKKFLDAGHKLNFAVASRKTFSHELSDFGLE 189
Query: 174 YVPSDKPLVFVRAEDGKKYAMKDEFSVEN--LESFLTKVVAGEVDPYIKSEPVPEDNSG 230
+ P+V +R G+K+ ++EFS + LE FL G + Y+KSEP+PE N G
Sbjct: 190 STAGEIPVVAIRTAKGEKFVXQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDG 248
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 40/49 (81%)
Query: 228 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+SGPVKV V K FD +V + +KDVL+EFYAPWCGHCK+L P+Y +G+K
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKK 53
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 99 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+SGPVKV V K FD +V + +KDVL+EFYAPWCGHC
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHC 40
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 225 PEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
P + GPV V VAKN++E+V ++ KDVL+EFYAPWCGHCK L P YEE+G
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELG 51
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 96 PEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
P + GPV V VAKN++E+V ++ KDVL+EFYAPWCGHC
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHC 40
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 194 MKDEFSVEN--LESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDV 251
+ D+ +E+ +ES + + G+ P +KS+ + E+ V V KN DE+V + +KDV
Sbjct: 320 LSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDV 379
Query: 252 LVEFYAPWCGHCKKLTPVYEEVGE 275
LV +YAPWCGHCK+L P Y+E+ +
Sbjct: 380 LVLYYAPWCGHCKRLAPTYQELAD 403
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 65 MKDEFSVEN--LESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDV 122
+ D+ +E+ +ES + + G+ P +KS+ + E+ V V KN DE+V + +KDV
Sbjct: 320 LSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDV 379
Query: 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAIS 158
LV +YAPWCGHC R+ + AD + A S
Sbjct: 380 LVLYYAPWCGHC-----KRLAPTYQELADTYANATS 410
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 218 YIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+++ E V ++S VK+A +F+E + +++ VL EF+APWCGHCK + P Y + E
Sbjct: 3 HMQQEAVAPEDSAVVKLAT-DSFNEYIQSHDL-VLAEFFAPWCGHCKNMAPEYVKAAE 58
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 89 YIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
+++ E V ++S VK+A +F+E + +++ VL EF+APWCGHC N
Sbjct: 3 HMQQEAVAPEDSAVVKLAT-DSFNEYIQSHDL-VLAEFFAPWCGHCKN 48
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 83/173 (47%), Gaps = 27/173 (15%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHE--- 166
NFD V + + VL+EFYAPWCGHC + K+A DK AK D
Sbjct: 24 NFDNFVADKDT-VLLEFYAPWCGHCKQF-APEYEKIANILKDKDPPIPVAKIDATSASVL 81
Query: 167 LNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPE 226
+ F P+ K L KK D E + KV EV S+P
Sbjct: 82 ASRFDVSGYPTIKIL--------KKGQAVDYEGSRTQEEIVAKV--REV-----SQP--- 123
Query: 227 DNSGPVKVAVA---KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
D + P +V + +NFDEVV N+ +LVEFYAPWCGHCKKL P YE+ ++
Sbjct: 124 DWTPPPEVTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKE 175
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 105 VAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
V +NFDEVV N+ +LVEFYAPWCGHC
Sbjct: 134 VLTKENFDEVV-NDADIILVEFYAPWCGHC 162
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 41/48 (85%)
Query: 228 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+SGPVKV V KNF++V + +K+V VEFYAPWCGHCK+L P+++++GE
Sbjct: 5 SSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGE 52
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 99 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+SGPVKV V KNF++V + +K+V VEFYAPWCGHC
Sbjct: 5 SSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHC 40
>pdb|3EC3|A Chain A, Crystal Structure Of The Bb Fragment Of Erp72
pdb|3EC3|B Chain B, Crystal Structure Of The Bb Fragment Of Erp72
Length = 250
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 3 KTGTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKK 62
+T T +WRN++L+VAK F + +TFAI+ ++D+ E+ + G D + E GKK
Sbjct: 149 RTATQFWRNKVLEVAKDFPE-YTFAIADEEDYATEVKDLGLSESGGDVNAAILD-ESGKK 206
Query: 63 YAMK-DEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSG 101
+A + +EF + L F+ G++ P IKS+PVP++N G
Sbjct: 207 FAXEPEEFDSDALREFVXAFKKGKLKPVIKSQPVPKNNKG 246
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 134 CTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYA 193
T +WRN++L+VAK F + +TFAI+ ++D+ E+ + G D + E GKK+A
Sbjct: 151 ATQFWRNKVLEVAKDFPE-YTFAIADEEDYATEVKDLGLSESGGDVNAAILD-ESGKKFA 208
Query: 194 MK-DEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSG 230
+ +EF + L F+ G++ P IKS+PVP++N G
Sbjct: 209 XEPEEFDSDALREFVXAFKKGKLKPVIKSQPVPKNNKG 246
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 228 NSGPVKVAVAK-NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
S V +++ K NFD+VV NN +LVEFYAPWCGHCKKL P YE+ ++
Sbjct: 4 GSSGVTLSLTKDNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKE 52
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 99 NSGPVKVAVAK-NFDEVVTNNEKDVLVEFYAPWCGHC 134
S V +++ K NFD+VV NN +LVEFYAPWCGHC
Sbjct: 4 GSSGVTLSLTKDNFDDVV-NNADIILVEFYAPWCGHC 39
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K+FD+ + N LVEFYAPWCGHCKKL+ + + ++
Sbjct: 25 KSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKR 63
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHC 134
K+FD+ + N LVEFYAPWCGHC
Sbjct: 25 KSFDKAIHNTNYTSLVEFYAPWCGHC 50
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 228 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+SG V NFD+ + E ++FYAPWCGHCK L P +EE+ +K
Sbjct: 5 SSGTVLALTENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKK 51
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 99 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+SG V NFD+ + E ++FYAPWCGHC
Sbjct: 5 SSGTVLALTENNFDDTIA--EGITFIKFYAPWCGHC 38
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
NFD V + + VL+EFYAPWCGHCK+ P YE++
Sbjct: 26 NFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIA 60
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNY 137
NFD V + + VL+EFYAPWCGHC +
Sbjct: 26 NFDNFVADKDT-VLLEFYAPWCGHCKQF 52
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
NFD+ + E ++FYAPWCGHCK L P +EE+ +K
Sbjct: 14 NFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKK 49
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
NFD+ + E ++FYAPWCGHC
Sbjct: 14 NFDDTIA--EGITFIKFYAPWCGHC 36
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
NF+ V ++ LVEFYAPWCGHC++LTP +++
Sbjct: 26 NFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKA 60
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC---TNYWRNRILKVAKGFADKFTFAISAKDDFQHE 166
NF+ V ++ LVEFYAPWCGHC T W+ K A D D Q
Sbjct: 26 NFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWK----KAATALKDVVKVGAVNADKHQSL 81
Query: 167 LNEFGFDYVPSDK 179
++G P+ K
Sbjct: 82 GGQYGVQGFPTIK 94
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
NFD+ + E ++FYAPWCGHCK L P +EE+ +K
Sbjct: 9 NFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKK 44
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
NFD+ + E ++FYAPWCGHC
Sbjct: 9 NFDDTIA--EGITFIKFYAPWCGHC 31
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 223 PVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
P ED+ V V NF E + + K +LVEFYAPWCGHCK L P Y + K
Sbjct: 3 PEEEDH---VLVLRKSNFAEALAAH-KYLLVEFYAPWCGHCKALAPEYAKAAGK 52
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 94 PVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
P ED+ V V NF E + + K +LVEFYAPWCGHC
Sbjct: 3 PEEEDH---VLVLRKSNFAEALAAH-KYLLVEFYAPWCGHC 39
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 30/39 (76%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+NF++ V ++K VLV+F+APWCG C+ + P+ EE+ ++
Sbjct: 9 ENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKE 47
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELN 168
+NF++ V ++K VLV+F+APWCG C I ++AK + K D+ +
Sbjct: 9 ENFEQEVLKSDKPVLVDFWAPWCGPC-RMIAPIIEELAKEYEGKVKVVKVNVDENPNTAA 67
Query: 169 EFGFDYVPS 177
++G +P+
Sbjct: 68 QYGIRSIPT 76
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 228 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVY 270
+SG V +FD+ V ++E +VEFYAPWCGHCK L P +
Sbjct: 5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEW 47
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 99 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
+SG V +FD+ V ++E +VEFYAPWCGHC N
Sbjct: 5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKN 42
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 239 NFDEVV--TNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
NF+ + T + +LVEF+APWCGHCK+L P YE +
Sbjct: 10 NFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATR 49
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 110 NFDEVV--TNNEKDVLVEFYAPWCGHC 134
NF+ + T + +LVEF+APWCGHC
Sbjct: 10 NFESRISDTGSAGLMLVEFFAPWCGHC 36
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
PVK +KNFDE +T N K V+V+F+A WC C L PV EE+
Sbjct: 7 PVKHLNSKNFDEFITKN-KIVVVDFWAEWCAPCLILAPVIEELA 49
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
PVK +KNFDE +T N K V+V+F+A WC C
Sbjct: 7 PVKHLNSKNFDEFITKN-KIVVVDFWAEWCAPC 38
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 232 VKVAVAK-NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
VK+ ++ FD +++ NE V+V+F+A WCG CK++ P YEE +
Sbjct: 10 VKIVTSQAEFDSIISQNEL-VIVDFFAEWCGPCKRIAPFYEECSK 53
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 103 VKVAVAK-NFDEVVTNNEKDVLVEFYAPWCGHC 134
VK+ ++ FD +++ NE V+V+F+A WCG C
Sbjct: 10 VKIVTSQAEFDSIISQNEL-VIVDFFAEWCGPC 41
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 228 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+SG V+V +N+ E++ E D ++EFYAPWC C+ L P +E E
Sbjct: 5 SSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAE 49
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 99 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
+SG V+V +N+ E++ E D ++EFYAPWC C N
Sbjct: 5 SSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQN 39
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCGHCK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADE 48
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCGHC
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGHC 35
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 226 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
+ S +KV A +V+++N K VLV+F+A WCG CK + PV EE+
Sbjct: 9 SEKSATIKVTDASFATDVLSSN-KPVLVDFWATWCGPCKMVAPVLEEIA 56
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 97 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ S +KV A +V+++N K VLV+F+A WCG C
Sbjct: 9 SEKSATIKVTDASFATDVLSSN-KPVLVDFWATWCGPC 45
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 226 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
+ S +KV A +V+++N K VLV+F+A WCG CK + PV EE+
Sbjct: 4 SEKSATIKVTDASFATDVLSSN-KPVLVDFWATWCGPCKMVAPVLEEIA 51
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 97 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ S +KV A +V+++N K VLV+F+A WCG C
Sbjct: 4 SEKSATIKVTDASFATDVLSSN-KPVLVDFWATWCGPC 40
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
+G +K +F++ V N+K VLV+F+A WCG C+++ P E +
Sbjct: 4 AGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIA 49
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISA 159
+G +K +F++ V N+K VLV+F+A WCG C + +A + DK
Sbjct: 4 AGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQI-APSLEAIAAEYGDKIEIVKLN 62
Query: 160 KDDFQHELNEFGFDYVPS 177
D+ ++G +P+
Sbjct: 63 IDENPGTAAKYGVMSIPT 80
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 234 VAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
V +NFDEV+ NN K VLV+ +A WC C P+Y++V EK
Sbjct: 8 VLTEENFDEVIRNN-KLVLVDCWAEWCAPCHLYEPIYKKVAEK 49
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 105 VAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ 164
V +NFDEV+ NN K VLV+ +A WC C Y KVA+ + K F D+ Q
Sbjct: 8 VLTEENFDEVIRNN-KLVLVDCWAEWCAPCHLY-EPIYKKVAEKYKGKAVFGRLNVDENQ 65
Query: 165 HELNEFGFDYVPSDKPLVFVRAE 187
+++ +P+ L+FV +
Sbjct: 66 KIADKYSVLNIPT--TLIFVNGQ 86
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 234 VAVAKNFDEV--VTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
V V ++D+ VT +K V+++F+A WCG CK + PV+E++ +
Sbjct: 17 VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISD 60
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 105 VAVAKNFDEV--VTNNEKDVLVEFYAPWCGHC 134
V V ++D+ VT +K V+++F+A WCG C
Sbjct: 17 VQVISSYDQFKQVTGGDKVVVIDFWATWCGPC 48
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
NF + + +K VLV+F+A WCG C+ + PV EE E
Sbjct: 9 NFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAE 44
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE 169
NF + + +K VLV+F+A WCG C + + A+ ADK T A D+ ++
Sbjct: 9 NFQQAI-QGDKPVLVDFWAAWCGPC-RMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 170 FGFDYVPS 177
FG +P+
Sbjct: 67 FGIMSIPT 74
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
A +D + + +K V+V+F+A WCG CK + P+ E+ E+
Sbjct: 15 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQ 54
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCGHC 134
A +D + + +K V+V+F+A WCG C
Sbjct: 15 ASEYDSALASGDKLVVVDFFATWCGPC 41
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
A +D + + +K V+V+F+A WCG CK + P+ E+ E+
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQ 47
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCGHC 134
A +D + + +K V+V+F+A WCG C
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPC 34
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
NF + + +K VLV+F+A WCG C+ + PV EE E
Sbjct: 9 NFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAE 44
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE 169
NF + + +K VLV+F+A WCG C + + A+ ADK T A D+ ++
Sbjct: 9 NFQQAI-QGDKPVLVDFWAAWCGPC-RMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 170 FGFDYVPS 177
FG +P+
Sbjct: 67 FGIMSIPT 74
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
++ E V +E V+V+F+APWCG CK + PV +E+ ++
Sbjct: 8 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKE 45
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
++ E V +E V+V+F+APWCG C
Sbjct: 8 SWKEFVLESEVPVMVDFWAPWCGPC 32
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
++ E V +E V+V+F+APWCG CK + PV +E+ ++
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKE 46
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
++ E V +E V+V+F+APWCG C
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPC 33
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
F VV + VLV+F+APWCG C+ + PV +E+
Sbjct: 10 TFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIA 45
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRIL-----KVAKGFADKFTFAISAKDDFQ 164
F VV + VLV+F+APWCG C RI+ ++A + DK D+
Sbjct: 10 TFKNVVLESSVPVLVDFWAPWCGPC------RIIAPVVDEIAGEYKDKLKCVKLNTDESP 63
Query: 165 HELNEFGFDYVPS 177
+ +E+G +P+
Sbjct: 64 NVASEYGIRSIPT 76
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ E+
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEE 48
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRIL-KVAKGFADKFTFAISAKDDFQHELN 168
+FD V + +LV+F+A WCG C IL ++A+ + K T A D
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMI--APILDEIAEEYQGKLTVAKLNIDQNPGTAP 68
Query: 169 EFGFDYVPS 177
++G +P+
Sbjct: 69 KYGIRGIPT 77
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ EE+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADE 48
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 234 VAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+A+ K D+ + +E VL +F+APWCG CK + PV EE+ ++
Sbjct: 1 MAIVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQE 45
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 105 VAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDD 162
+A+ K D+ + +E VL +F+APWCG C + ++ + DK D+
Sbjct: 1 MAIVKATDQSFSAETSEGVVLADFWAPWCGPC-KMIAPVLEELDQEMGDKLKIVKIDVDE 59
Query: 163 FQHELNEFGFDYVPS 177
Q ++G +P+
Sbjct: 60 NQETAGKYGVMSIPT 74
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 12 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 49
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 12 SFDTDVLKADGAILVDFWAEWCGPC 36
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+FD V + +LV+F+A WCG CK + P+ +E+ +
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD 47
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
++FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 10 ESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHC 134
++FD V + +LV+F+A WCG C
Sbjct: 10 ESFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
A FD + + K V+V+FYA WCG CK + P+ E+ E+
Sbjct: 8 ASEFDSAIAQD-KLVVVDFYATWCGPCKMIAPMIEKFSEQ 46
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL 167
A FD + + K V+V+FYA WCG C K+ +KF+ D ++ ++
Sbjct: 8 ASEFDSAIAQD-KLVVVDFYATWCGPC---------KMIAPMIEKFSEQYPQADFYKLDV 57
Query: 168 NEFG 171
+E G
Sbjct: 58 DELG 61
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
A FD + + K V+V+FYA WCG CK + P+ E+ E+
Sbjct: 14 ASEFDSAIAQD-KLVVVDFYATWCGPCKMIAPMIEKFSEQ 52
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL 167
A FD + + K V+V+FYA WCG C K+ +KF+ D ++ ++
Sbjct: 14 ASEFDSAIAQD-KLVVVDFYATWCGPC---------KMIAPMIEKFSEQYPQADFYKLDV 63
Query: 168 NEFG 171
+E G
Sbjct: 64 DELG 67
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 226 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
+ S +KV A +V+++N K VLV+F+A WCG K + PV EE+
Sbjct: 6 SEKSATIKVTDASFATDVLSSN-KPVLVDFWATWCGPSKMVAPVLEEIA 53
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 97 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCG 132
+ S +KV A +V+++N K VLV+F+A WCG
Sbjct: 6 SEKSATIKVTDASFATDVLSSN-KPVLVDFWATWCG 40
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
NF + + + VLV+F+A WCG C+ + PV EE E
Sbjct: 9 NFQQAI-QGDGPVLVDFWAAWCGPCRMMAPVLEEFAE 44
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE 169
NF + + + VLV+F+A WCG C + + A+ ADK T A D+ ++
Sbjct: 9 NFQQAI-QGDGPVLVDFWAAWCGPC-RMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 170 FGFDYVPS 177
FG +P+
Sbjct: 67 FGIMSIPT 74
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 21 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 58
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRIL-KVAKGFADKFTFAISAKDDFQHELN 168
+FD V + +LV+F+A WCG C IL ++A + K T A D
Sbjct: 21 SFDTDVLKADGAILVDFWAEWCGPCKMI--APILDEIADEYQGKLTVAKLNIDQNPGTAP 78
Query: 169 EFGFDYVPSDKPLVFVRAEDGKKYAMK-DEFSVENLESFLTKVVAG 213
++G +P+ L+F ++G+ A K S L+ FL +AG
Sbjct: 79 KYGIRGIPT--LLLF---KNGEVAATKVGALSKGQLKEFLDANLAG 119
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
NF + + + VLV+F+A WCG C+ + PV EE E
Sbjct: 9 NFQQAI-QGDGPVLVDFWAAWCGPCRMMAPVLEEFAE 44
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE 169
NF + + + VLV+F+A WCG C + + A+ ADK T A D+ ++
Sbjct: 9 NFQQAI-QGDGPVLVDFWAAWCGPC-RMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQ 66
Query: 170 FGFDYVPS 177
FG +P+
Sbjct: 67 FGIMSIPT 74
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD+ V VLV+F+A WCG CK + P E+G++
Sbjct: 11 SFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKE 48
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE 169
+FD+ V VLV+F+A WCG C + ++ K FA K T A DD N
Sbjct: 11 SFDQDVLKASGLVLVDFWAEWCGPCKMI-GPALGEIGKEFAGKVTVAKVNIDDNPETPNA 69
Query: 170 FGFDYVPSDKPLVFVRAEDGK 190
+ +P+ L+ VR DGK
Sbjct: 70 YQVRSIPT---LMLVR--DGK 85
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 246 NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ K V+V+F+A WCG CK + P+++E+ EK
Sbjct: 31 HKNKLVVVDFFATWCGPCKTIAPLFKELSEK 61
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 117 NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVP 176
+ K V+V+F+A WCG C I + K ++K+ AI K D +L E Y
Sbjct: 31 HKNKLVVVDFFATWCGPCKT-----IAPLFKELSEKYD-AIFVKVDVD-KLEETARKYNI 83
Query: 177 SDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211
S P F+ ++G+K S+ +E + K +
Sbjct: 84 SAMP-TFIAIKNGEKVGDVVGASIAKVEDMIKKFI 117
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD + + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD + + +LV+F+A WCG C
Sbjct: 11 SFDTDLVKADGAILVDFWAEWCGPC 35
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 246 NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ K V+V+F+A WCG CK + P+++E+ EK
Sbjct: 22 HKNKLVVVDFFATWCGPCKTIAPLFKELSEK 52
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 117 NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVP 176
+ K V+V+F+A WCG C I + K ++K+ AI K D +L E Y
Sbjct: 22 HKNKLVVVDFFATWCGPCKT-----IAPLFKELSEKYD-AIFVKVDVD-KLEETARKYNI 74
Query: 177 SDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211
S P F+ ++G+K S+ +E + K +
Sbjct: 75 SAMP-TFIAIKNGEKVGDVVGASIAKVEDMIKKFI 108
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
+F + V N+E V+V+F+A WCG CK L P E++
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKM 56
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRIL--KVAKGFADKFTFAISAKDDFQHEL 167
+F + V N+E V+V+F+A WCG C +IL ++ K A + + AK D
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPC------KILGPRLEKMVAKQHGKVVMAKVDIDDH- 74
Query: 168 NEFGFDYVPSDKPLVFVRAED---GKKYAMKDEFSVENLESFLTKVVA 212
+ +Y S P V K +KDE + LE+FL K++
Sbjct: 75 TDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDE---DQLEAFLKKLIG 119
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +++ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADE 48
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+NFDE + + VLV+F+A WC C+ + P+ EE+ ++
Sbjct: 10 QNFDETLGQHPL-VLVDFWAEWCAPCRXIAPILEEIAKE 47
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHC 134
+NFDE + + VLV+F+A WC C
Sbjct: 10 QNFDETLGQHPL-VLVDFWAEWCAPC 34
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+NFDE + + VLV+F+A WC C+ + P+ EE+ ++
Sbjct: 9 QNFDETLGQHPL-VLVDFWAEWCAPCRXIAPILEEIAKE 46
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHC 134
+NFDE + + VLV+F+A WC C
Sbjct: 9 QNFDETLGQHPL-VLVDFWAEWCAPC 33
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG C+ + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADE 48
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
A +D + + +K V+V+F+A WCG K + P+ E+ E+
Sbjct: 16 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQ 55
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCG 132
A +D + + +K V+V+F+A WCG
Sbjct: 16 ASEYDSALASGDKLVVVDFFATWCG 40
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
A +D + + +K V+V+F+A WCG K + P+ E+ E+
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQ 47
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCG 132
A +D + + +K V+V+F+A WCG
Sbjct: 8 ASEYDSALASGDKLVVVDFFATWCG 32
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+F+ V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE 48
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+F+ V + +LV+F+A WCG C
Sbjct: 11 SFETDVLKADGAILVDFWAEWCGPC 35
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 228 NSGPVKVAVAKNFDEVVTNNEKD---VLVEFYAPWCGHCKKLTPVYE 271
+G + VA ++ E+D +LV+F+APWCG C+++ P ++
Sbjct: 41 GAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQ 87
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 99 NSGPVKVAVAKNFDEVVTNNEKD---VLVEFYAPWCGHCTNY 137
+G + VA ++ E+D +LV+F+APWCG C
Sbjct: 41 GAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQM 82
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
++ E V +E V+V+F+APWCG K + PV +E+ ++
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKE 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCG 132
++ E V +E V+V+F+APWCG
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCG 31
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 230 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
G V A A+ D+++ ++ V ++F+APWCG C+ P++ E
Sbjct: 38 GEVINATAETLDKLLQDDLPXV-IDFWAPWCGPCRSFAPIFAETA 81
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNY 137
G V A A+ D+++ ++ V ++F+APWCG C ++
Sbjct: 38 GEVINATAETLDKLLQDDLPXV-IDFWAPWCGPCRSF 73
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+KNFD + ++E V V+F+A WC C L P+ EE+ E
Sbjct: 6 SKNFDSFLASHEIAV-VDFWAEWCAPCLILAPIIEELAE 43
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+KNFD + ++E V V+F+A WC C
Sbjct: 6 SKNFDSFLASHEIAV-VDFWAEWCAPC 31
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYE 271
+ F+E V + +V+FYAPWCG C+ P +E
Sbjct: 11 QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFE 44
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHCTNY 137
+ F+E V + +V+FYAPWCG C N+
Sbjct: 11 QTFNEKVLQGKTHWVVDFYAPWCGPCQNF 39
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 225 PEDNSGPVKVAVAKNFDEVVTNNEKD----------VLVEFYAPWCGHCKKLTPVYEEVG 274
P PV A VV +EK LV+F+APWCG C+ ++P+ EE+
Sbjct: 17 PPPGQVPVCGACKTPLPWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELA 76
Query: 275 E 275
Sbjct: 77 R 77
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 96 PEDNSGPVKVAVAKNFDEVVTNNEKD----------VLVEFYAPWCGHCTNYWRNRIL-K 144
P PV A VV +EK LV+F+APWCG C + IL +
Sbjct: 17 PPPGQVPVCGACKTPLPWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLV--SPILEE 74
Query: 145 VAKGFADKFTFAISAKDDFQHELNEFGFDYVPS 177
+A+ A + D+ +G VP+
Sbjct: 75 LARDHAGRLKVVKVNVDEHPGLAARYGVRSVPT 107
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 252 LVEFYAPWCGHCKKLTPVYEEVG 274
LV+F+A WCG CK + PV EE+
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELA 45
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
KN +E +K +V+FYA WCG CK + P+ +E+ ++
Sbjct: 28 KNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKE 66
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHC 134
KN +E +K +V+FYA WCG C
Sbjct: 28 KNPEEWKYEGDKPAIVDFYADWCGPC 53
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 252 LVEFYAPWCGHCKKLTPVYEEVG 274
LV+F+A WCG CK + PV EE+
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELA 46
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
S P+ + A V + VEF+A WCGHC P + + E
Sbjct: 11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAE 57
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNY 137
S P+ + A V + VEF+A WCGHC +
Sbjct: 11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAF 48
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 234 VAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
+A+ K D+ + +E VL +F+APWCG K + PV EE+
Sbjct: 1 MAIVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEEL 42
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 222 EPVPEDNSGPVKVAVAK-NFDEVVTNNEKD---VLVEFYAPWCGHCKKLTPVYEEVGE 275
EP E G V + K +D+ ++ +D VL F A WCG CK++ P Y E+ E
Sbjct: 16 EPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSE 73
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 234 VAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
+A+ K D+ + +E VL +F+APWCG K + PV EE+
Sbjct: 1 MAIVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEEL 42
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WC CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADE 48
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + + +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADE 48
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE 169
+FD V + +LV+F+A WCG C + + ++A + K T A D +
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC-KLIASILDEIADEYQGKLTVAKLNIDQNPGTAPK 69
Query: 170 FGFDYVPS 177
+G +P+
Sbjct: 70 YGIRGIPT 77
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGH-CKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG CK + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADE 49
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE 169
+FD V + +LV+F+A WCG + ++A + K T A D +
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPK 70
Query: 170 FGFDYVPS 177
+G +P+
Sbjct: 71 YGIRGIPT 78
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG K + P+ +E+ ++
Sbjct: 31 SFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADE 68
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+K +V+FYA WCG CK + P+ EE+ +
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSK 78
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL-NEFGFDYVP 176
+K +V+FYA WCG C + +++K +A K + D + EL +FG +P
Sbjct: 50 GDKPAIVDFYADWCGPCKMV-APILEELSKEYAGKI-YIYKVNVDKEPELARDFGIQSIP 107
Query: 177 SDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211
+ ++ G+ S E L+ ++ KV+
Sbjct: 108 T----IWFVPMKGEPQVNMGALSKEQLKGYIDKVL 138
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 252 LVEFYAPWCGHCKKLTPVYEEVG 274
LV+F+A WCG CK + PV EE+
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELA 46
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEV 273
+K +V+FYA WCG CK + P+ EE+
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEEL 76
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL-NEFGFDYVP 176
+K +V+FYA WCG C + +++K +A K + D + EL +FG +P
Sbjct: 50 GDKPAIVDFYADWCGPCKMV-APILEELSKEYAGKI-YIYKVNVDKEPELARDFGIQGIP 107
Query: 177 SDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211
+ ++ G+ S E L+ ++ KV+
Sbjct: 108 T----IWFVPMKGEPQVNMGALSKEQLKGYIDKVL 138
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WCG K + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADE 48
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
A FD + + K V+V+FYA WCG K + P+ E+ E+
Sbjct: 14 ASEFDSAIAQD-KLVVVDFYATWCGPSKMIAPMIEKFSEQ 52
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCG 132
A FD + + K V+V+FYA WCG
Sbjct: 14 ASEFDSAIAQD-KLVVVDFYATWCG 37
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGE 275
K V+++FYA WCG CK + P EE+ +
Sbjct: 21 KLVVIDFYATWCGPCKMIAPKLEELSQ 47
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 120 KDVLVEFYAPWCGHC 134
K V+++FYA WCG C
Sbjct: 21 KLVVIDFYATWCGPC 35
>pdb|2DJK|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP2|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 133
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 68 EFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSG 101
E + E +++F+ VAG+++P IKSEP+PE G
Sbjct: 100 EITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEG 133
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 197 EFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSG 230
E + E +++F+ VAG+++P IKSEP+PE G
Sbjct: 100 EITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEG 133
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+N DE++ NN LV FYA WC + L P++EE +
Sbjct: 12 TENIDEIL-NNADVALVNFYADWCRFSQXLHPIFEEASD 49
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 238 KNFDEVVTNNE---KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ FD + N + K V+++F A WCG C+ + PV+ E +K
Sbjct: 15 QEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKK 56
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 109 KNFDEVVTNNE---KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH 165
+ FD + N + K V+++F A WCG C I V +A KF AI K D
Sbjct: 15 QEFDTHMANGKDTGKLVIIDFTASWCGPC-----RVIAPVFAEYAKKFPGAIFLKVDVD- 68
Query: 166 ELNEFGFDYVPSDKPLVFVRAEDGKK 191
EL + Y P F+ +DG+K
Sbjct: 69 ELKDVAEAYNVEAMP-TFLFIKDGEK 93
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG CK + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG CK + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 234 VAVAKNFDEVVTNNE-KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+A A + ++++ N+ + ++V+F+A WCG C+ + P E + ++
Sbjct: 4 LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKE 47
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 105 VAVAKNFDEVVTNNE-KDVLVEFYAPWCGHCTN 136
+A A + ++++ N+ + ++V+F+A WCG C N
Sbjct: 4 LATAADLEKLINENKGRLIVVDFFAQWCGPCRN 36
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 240 FDEVVTNNEKDVLVEFYAPWCGHCKKLTPV 269
F+ V E+ VLV F+A WCG C+ ++P+
Sbjct: 17 FESEVLKAEQPVLVYFWASWCGPCQLMSPL 46
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 111 FDEVVTNNEKDVLVEFYAPWCGHC 134
F+ V E+ VLV F+A WCG C
Sbjct: 17 FESEVLKAEQPVLVYFWASWCGPC 40
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG CK + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WC K + P+ +E+ ++
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADE 48
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 246 NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+++F A WCG C+ + PV+ ++ +K
Sbjct: 32 TAKKLVVIDFTASWCGPCRIMAPVFADLAKK 62
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 251 VLVEFYAPWCGHCKKLTPVYEEVGE 275
VLV+F+A WCG C++L + + E
Sbjct: 26 VLVDFFATWCGPCQRLGQILPSIAE 50
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 122 VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPL 181
VLV+F+A WCG C +IL TF D + + +G +P+ L
Sbjct: 26 VLVDFFATWCGPCQRL--GQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPA---L 80
Query: 182 VFVRAEDGKKYAMKDEF 198
FV+ E G + D+F
Sbjct: 81 FFVKKE-GNEIKTLDQF 96
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 224 VPEDNSGPVKVA--VAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
V D P +V + FD +V + EKDV V +Y PW H +++++
Sbjct: 7 VANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLS 59
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 95 VPEDNSGPVKVA--VAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWR 139
V D P +V + FD +V + EKDV V +Y PW H R
Sbjct: 7 VANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMR 53
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 227 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
+S P+ + A + V + VEF+A WCGH P ++E+
Sbjct: 9 SSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELA 56
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 98 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNY 137
+S P+ + A + V + VEF+A WCGH +
Sbjct: 9 SSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAF 48
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG CK + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG CK + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG CK + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 248 EKDVLVEFYAPWCGHCKKLTPVYEEV 273
K ++V+F A WCG CK + P++E +
Sbjct: 24 HKPIVVDFTATWCGPCKMIAPLFETL 49
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K V+++F A WCG C+ + PV+ E +K
Sbjct: 37 KVVIIDFTASWCGPCRFIAPVFAEYAKK 64
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG CK + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG CK + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG CK + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 233 KVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTP 268
K+ F ++ N+K ++++FYA WCG CK + P
Sbjct: 16 KLTNLTEFRNLIKQNDK-LVIDFYATWCGPCKMMQP 50
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 104 KVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD 151
K+ F ++ N+K ++++FYA WCG C + + K+ + + D
Sbjct: 16 KLTNLTEFRNLIKQNDK-LVIDFYATWCGPC-KMMQPHLTKLIQAYPD 61
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 252 LVEFYAPWCGHCKKLTPVYEEVG 274
LV+F+A WCG K + PV EE+
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELA 46
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+K V+++ + WCG CK + P YE++ E
Sbjct: 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAE 52
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 246 NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
++K ++V+F A WC CK + P++ E+ +K
Sbjct: 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKK 54
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+K V+++ + WCG CK + P YE++ E
Sbjct: 36 GDKPVVLDMFTQWCGPCKAMAPKYEKLAE 64
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 248 EKDVLVEFYAPWCGHCKKLTPVYEEV 273
K ++V F A WCG CK + P++E +
Sbjct: 24 HKPIVVAFTATWCGPCKMIAPLFETL 49
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 222 EPVPEDNSGPVKVAVAK-NFDEVVTNNEKD---VLVEFYAPWCGHCKKLTPVYEEVGE 275
EP E G V + K +D+ ++ +D VL F A WCG +++ P Y E+ E
Sbjct: 16 EPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSE 73
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEE 272
+ FD V + E V FY+P C HC L P + E
Sbjct: 105 REFDAAVNSGEL-WFVNFYSPGCSHCHDLAPTWRE 138
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+F V + +++ F WC CKK+ P +EE+ +
Sbjct: 8 DFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQ 45
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K V+++F+A WCG CK ++P E+ +
Sbjct: 26 KLVVLDFFATWCGPCKMISPKLVELSTQ 53
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 120 KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPS 177
K V+++F+A WCG C ++++++ FAD D+ + E+ +P+
Sbjct: 26 KLVVLDFFATWCGPC-KMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPT 82
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 3 KTGTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGF--DYVPSDKPLVFVRAEDG 60
KT ++ +IL F F S D Q L FG + P+ + L+ + E
Sbjct: 55 KTAAESFKGKIL---------FAFIDSDHTDNQRILEFFGLKKEECPAVR-LITLEEEMT 104
Query: 61 KKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPED 98
K +E + E + F + + G++ P++ S+ +PED
Sbjct: 105 KYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED 142
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 146 AKGFADKFTFAISAKD--DFQHELNEFGF--DYVPSDKPLVFVRAEDGKKYAMKDEFSVE 201
A+ F K FA D D Q L FG + P+ + L+ + E K +E + E
Sbjct: 58 AESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPAVR-LITLEEEMTKYKPESEELTAE 116
Query: 202 NLESFLTKVVAGEVDPYIKSEPVPED 227
+ F + + G++ P++ S+ +PED
Sbjct: 117 RITEFCHRFLEGKIKPHLMSQELPED 142
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K V+++F+A WCG CK ++P E+ +
Sbjct: 21 KLVVLDFFATWCGPCKMISPKLVELSTQ 48
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 120 KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPS 177
K V+++F+A WCG C ++++++ FAD D+ + E+ +P+
Sbjct: 21 KLVVLDFFATWCGPC-KMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPT 77
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEE 272
+ + V +++K V+V FY+P C +CK P +EE
Sbjct: 15 TWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEE 48
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 252 LVEFYAPWCGHCKKLTPVYEEVG 274
LV+F+A CG CK + PV EE+
Sbjct: 23 LVDFWATACGPCKMIAPVLEELA 45
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG K + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPAKMIKPFFHSLSEK 48
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG K + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHSLSEK 48
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 14/52 (26%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWC--------------GHCKKLTPVYEEVGEK 276
+FD V + +LV+F+A WC G CK + P+ +E+ ++
Sbjct: 12 SFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADE 63
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEE 272
K V+++F A WCG C+K P E+
Sbjct: 34 KVVMLQFTASWCGVCRKEMPFIEK 57
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 251 VLVEFYAPWCGHCKKLTPVYEEVGEK 276
V+V+F A WCG C+ + P + ++ +K
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKK 66
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 228 NSGPVKVAVAKNFDEVVTNNEKDV-LVEFYAPWCGHCKKLTPVYEEVGEK 276
+SG +K K DE + +++ +VEF+A W C+ P+Y ++ K
Sbjct: 5 SSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLK 54
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 237 AKNFDEVVTNNEKDVLV-EFYAPWCGHCKKLTPVYEEVGEK 276
A F+E++ K +LV F+APW C ++ V E+ ++
Sbjct: 20 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKE 60
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 237 AKNFDEVVTNNEKDVLV-EFYAPWCGHCKKLTPVYEEVGEK 276
A F+E++ K +LV F+APW C ++ V E+ ++
Sbjct: 26 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKE 66
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+++F A WCG + + PV+ ++ +K
Sbjct: 37 KKLVVIDFTASWCGPSRIMAPVFADLAKK 65
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG K + P + + EK
Sbjct: 30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEK 59
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+K V+V+F A WCG K + P + + EK
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHSLSEK 48
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYE 271
+ F+E V + +V+FYAPW G + P +E
Sbjct: 665 QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFE 698
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHCTNY 137
+ F+E V + +V+FYAPW G N+
Sbjct: 665 QTFNEKVLQGKTHWVVDFYAPWSGPSQNF 693
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 228 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
N+ ++ F++++ + K LV F C C+K+TPV EE+
Sbjct: 2 NAXSLEKLDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEEL 47
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 121 DVLVEFYAPWCGHCTNYWRNRILKVAKGFADKF-TFAISAKDDFQHE--LNEFGFDYVPS 177
D +V F+ C HC N KV F + AIS+ D + E GF+ VP+
Sbjct: 21 DAIVFFHKNLCPHCKNME-----KVLDKFGARAPQVAISSVDSEARPELMKELGFERVPT 75
Query: 178 DKPLVFVRAEDGK 190
LVF+R DGK
Sbjct: 76 ---LVFIR--DGK 83
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+K V+++ + WCG K + P YE++ E
Sbjct: 23 GDKPVVLDMFTQWCGPSKAMAPKYEKLAE 51
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K V + F A WC C+ TPV E EK
Sbjct: 29 KTVFLYFSASWCPPCRGFTPVLAEFYEK 56
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K +LV +A WC C+K P +E+ K
Sbjct: 61 KTLLVNLWATWCVPCRKEMPALDELQGK 88
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K + ++ +A WCG C+ P +E+ EK
Sbjct: 31 KYIYIDVWATWCGPCRGELPALKELEEK 58
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 249 KDVLVEFYAPWCGHCKKLTP 268
K V + F+ WC HCKK P
Sbjct: 27 KGVFLNFWGTWCPHCKKEFP 46
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 249 KDVLVEFYAPWCGHCKKLTP 268
K V + F+ WC HCKK P
Sbjct: 24 KGVFLNFWGTWCEHCKKEFP 43
>pdb|2ZNM|A Chain A, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|B Chain B, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|C Chain C, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|D Chain D, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
Length = 195
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 18/60 (30%)
Query: 216 DPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
D + +P+P++ SG ++V +EF+ +C HC P+ ++G+
Sbjct: 8 DYLVLDKPIPQEQSGKIEV------------------LEFFGYFCVHCHHFDPLLLKLGK 49
>pdb|3DVX|A Chain A, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
pdb|3DVX|B Chain B, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
Length = 196
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 18/60 (30%)
Query: 216 DPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
D + +P+P++ SG ++V +EF+ +C HC P+ ++G+
Sbjct: 9 DYLVLDKPIPQEQSGKIEV------------------LEFFGYFCVHCHHFDPLLLKLGK 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,913,333
Number of Sequences: 62578
Number of extensions: 392149
Number of successful extensions: 1679
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 316
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)