Query psy9102
Match_columns 277
No_of_seqs 209 out of 2916
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 18:57:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 100.0 1.1E-35 2.5E-40 259.7 20.3 241 11-277 168-413 (493)
2 KOG0190|consensus 100.0 1.6E-31 3.4E-36 233.8 17.8 199 5-212 269-474 (493)
3 PTZ00102 disulphide isomerase; 100.0 8.8E-30 1.9E-34 231.5 22.9 257 6-277 64-404 (477)
4 TIGR01130 ER_PDI_fam protein d 100.0 4.9E-28 1.1E-32 219.2 22.4 240 7-277 142-393 (462)
5 PTZ00102 disulphide isomerase; 100.0 4E-27 8.7E-32 214.1 21.4 199 4-212 260-466 (477)
6 TIGR01130 ER_PDI_fam protein d 99.9 3.7E-26 8.1E-31 206.9 21.4 200 7-215 251-458 (462)
7 KOG0191|consensus 99.9 1.1E-25 2.4E-30 198.5 17.5 245 6-275 62-314 (383)
8 KOG0191|consensus 99.9 5.1E-24 1.1E-28 187.9 15.4 158 104-276 32-190 (383)
9 KOG0910|consensus 99.9 1.5E-21 3.4E-26 144.2 7.3 107 101-212 43-149 (150)
10 TIGR02187 GlrX_arch Glutaredox 99.8 5.1E-20 1.1E-24 149.9 13.6 135 121-276 21-161 (215)
11 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2E-20 4.4E-25 135.7 9.6 102 101-207 9-113 (113)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.7E-20 5.9E-25 134.2 8.1 101 102-207 2-104 (104)
13 PF13848 Thioredoxin_6: Thiore 99.8 9.5E-19 2.1E-23 139.1 16.4 177 3-209 2-184 (184)
14 PF00085 Thioredoxin: Thioredo 99.8 1.2E-19 2.6E-24 130.4 10.0 103 103-210 1-103 (103)
15 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 8.9E-20 1.9E-24 130.8 8.8 99 102-206 2-100 (101)
16 cd03065 PDI_b_Calsequestrin_N 99.8 5.7E-19 1.2E-23 128.9 8.8 106 100-211 8-119 (120)
17 cd03002 PDI_a_MPD1_like PDI fa 99.8 5.1E-19 1.1E-23 128.6 8.6 100 103-207 2-108 (109)
18 PRK09381 trxA thioredoxin; Pro 99.8 2.2E-18 4.7E-23 125.3 10.1 106 101-211 3-108 (109)
19 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.5E-18 3.3E-23 125.9 7.9 100 102-207 2-108 (108)
20 cd03001 PDI_a_P5 PDIa family, 99.8 3.5E-18 7.6E-23 122.8 9.0 100 103-207 2-102 (103)
21 cd02963 TRX_DnaJ TRX domain, D 99.8 2.6E-18 5.6E-23 125.1 7.6 101 104-209 7-110 (111)
22 PTZ00443 Thioredoxin domain-co 99.7 7.2E-18 1.6E-22 136.3 10.1 107 100-212 29-140 (224)
23 cd02956 ybbN ybbN protein fami 99.7 4.6E-18 1E-22 120.7 8.0 94 110-208 2-96 (96)
24 cd02994 PDI_a_TMX PDIa family, 99.7 9.7E-18 2.1E-22 120.1 9.5 99 102-209 2-101 (101)
25 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 9.3E-18 2E-22 120.8 9.0 99 103-207 2-104 (104)
26 COG3118 Thioredoxin domain-con 99.7 6E-18 1.3E-22 138.3 8.2 108 101-213 23-132 (304)
27 cd02999 PDI_a_ERp44_like PDIa 99.7 1.3E-17 2.9E-22 118.9 8.8 84 117-207 16-100 (100)
28 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.1E-17 2.3E-22 120.0 7.7 98 103-207 2-102 (102)
29 PTZ00062 glutaredoxin; Provisi 99.7 1.9E-17 4.1E-22 131.8 9.4 134 109-276 7-144 (204)
30 TIGR01126 pdi_dom protein disu 99.7 1.7E-17 3.7E-22 118.9 8.3 99 106-210 1-101 (102)
31 cd02993 PDI_a_APS_reductase PD 99.7 1.7E-17 3.6E-22 120.5 8.2 101 102-207 2-109 (109)
32 cd02954 DIM1 Dim1 family; Dim1 99.7 6.5E-18 1.4E-22 121.5 5.4 84 110-198 4-88 (114)
33 TIGR02187 GlrX_arch Glutaredox 99.7 2E-16 4.4E-21 128.7 14.4 172 6-209 37-214 (215)
34 cd02998 PDI_a_ERp38 PDIa famil 99.7 4.2E-17 9E-22 117.5 8.7 100 103-207 2-105 (105)
35 PHA02278 thioredoxin-like prot 99.7 3.6E-17 7.7E-22 116.7 7.4 91 110-206 6-100 (103)
36 PRK10996 thioredoxin 2; Provis 99.7 1.7E-16 3.6E-21 120.1 9.1 104 101-210 35-138 (139)
37 cd02985 TRX_CDSP32 TRX family, 99.7 1.2E-16 2.6E-21 114.7 7.9 94 109-209 4-101 (103)
38 cd02997 PDI_a_PDIR PDIa family 99.7 1.5E-16 3.3E-21 114.5 8.4 99 103-207 2-104 (104)
39 TIGR01068 thioredoxin thioredo 99.7 1.5E-16 3.3E-21 113.6 8.2 99 107-210 2-100 (101)
40 KOG0907|consensus 99.7 1.9E-16 4.2E-21 113.0 7.4 86 117-209 19-104 (106)
41 cd02948 TRX_NDPK TRX domain, T 99.7 2.7E-16 5.9E-21 112.7 7.7 95 107-209 6-101 (102)
42 cd02957 Phd_like Phosducin (Ph 99.7 4E-16 8.7E-21 114.0 8.2 90 100-196 3-94 (113)
43 cd02965 HyaE HyaE family; HyaE 99.7 3.8E-16 8.3E-21 111.5 7.6 97 102-204 11-109 (111)
44 PLN00410 U5 snRNP protein, DIM 99.7 3.9E-16 8.5E-21 116.6 7.7 103 108-215 11-124 (142)
45 cd03007 PDI_a_ERp29_N PDIa fam 99.6 5.6E-16 1.2E-20 111.8 7.7 101 102-210 2-115 (116)
46 cd03000 PDI_a_TMX3 PDIa family 99.6 1.3E-15 2.9E-20 109.6 9.4 94 109-210 7-103 (104)
47 cd02950 TxlA TRX-like protein 99.6 3.4E-15 7.3E-20 113.3 11.4 95 116-215 17-114 (142)
48 cd02961 PDI_a_family Protein D 99.6 9.4E-16 2E-20 109.2 6.9 96 106-207 3-101 (101)
49 cd02989 Phd_like_TxnDC9 Phosdu 99.6 3.3E-15 7.2E-20 108.9 8.8 100 101-207 4-112 (113)
50 cd02949 TRX_NTR TRX domain, no 99.6 2.4E-15 5.1E-20 106.9 7.7 91 113-208 7-97 (97)
51 cd02962 TMX2 TMX2 family; comp 99.6 5.4E-15 1.2E-19 112.7 8.9 103 92-196 20-126 (152)
52 cd02992 PDI_a_QSOX PDIa family 99.6 5.1E-15 1.1E-19 108.2 8.4 99 102-205 2-110 (114)
53 TIGR00424 APS_reduc 5'-adenyly 99.6 4.8E-15 1E-19 131.4 9.7 106 100-210 350-462 (463)
54 cd02982 PDI_b'_family Protein 99.6 7.1E-15 1.5E-19 105.6 8.7 90 119-211 12-103 (103)
55 cd02984 TRX_PICOT TRX domain, 99.6 4.6E-15 1E-19 105.3 7.1 92 110-207 4-96 (97)
56 PLN02309 5'-adenylylsulfate re 99.6 6.1E-15 1.3E-19 130.7 9.1 106 100-210 344-456 (457)
57 cd02953 DsbDgamma DsbD gamma f 99.6 8.2E-15 1.8E-19 105.5 7.9 87 117-208 9-104 (104)
58 KOG4277|consensus 99.6 1.6E-14 3.4E-19 117.6 10.1 87 120-212 44-133 (468)
59 cd02987 Phd_like_Phd Phosducin 99.6 1.3E-14 2.8E-19 113.7 8.7 104 99-209 60-173 (175)
60 cd02986 DLP Dim1 family, Dim1- 99.6 1.5E-14 3.3E-19 103.2 8.1 90 118-212 13-112 (114)
61 cd02975 PfPDO_like_N Pyrococcu 99.6 1.9E-14 4.1E-19 104.9 8.8 89 118-212 21-111 (113)
62 PTZ00051 thioredoxin; Provisio 99.5 4.6E-14 1E-18 100.3 7.4 88 109-204 9-96 (98)
63 cd02951 SoxW SoxW family; SoxW 99.5 1.3E-13 2.9E-18 102.6 9.0 92 117-213 11-121 (125)
64 cd02947 TRX_family TRX family; 99.5 2.3E-13 5E-18 95.0 8.2 90 111-207 3-92 (93)
65 KOG0912|consensus 99.5 1.9E-13 4.2E-18 111.5 8.5 98 109-212 4-107 (375)
66 cd02988 Phd_like_VIAF Phosduci 99.5 2E-13 4.4E-18 108.4 7.9 102 99-209 80-190 (192)
67 KOG0908|consensus 99.4 2.8E-13 6.1E-18 107.6 7.9 98 109-213 10-108 (288)
68 TIGR00411 redox_disulf_1 small 99.4 1.2E-12 2.7E-17 89.7 9.1 81 122-211 2-82 (82)
69 TIGR01295 PedC_BrcD bacterioci 99.4 8.4E-13 1.8E-17 97.4 8.1 104 101-208 6-121 (122)
70 cd02952 TRP14_like Human TRX-r 99.4 1.2E-12 2.6E-17 95.4 6.6 93 109-207 10-118 (119)
71 cd03006 PDI_a_EFP1_N PDIa fami 99.3 3.6E-12 7.9E-17 92.4 6.6 50 228-277 7-58 (113)
72 KOG0910|consensus 99.2 6.9E-12 1.5E-16 93.1 4.6 48 230-277 43-90 (150)
73 cd02959 ERp19 Endoplasmic reti 99.2 1.8E-11 3.9E-16 89.7 6.0 91 116-209 16-111 (117)
74 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 1.8E-11 3.9E-16 87.9 5.9 47 231-277 2-48 (104)
75 PF13098 Thioredoxin_2: Thiore 99.2 5.2E-11 1.1E-15 86.7 8.0 86 117-207 3-112 (112)
76 PRK14018 trifunctional thiored 99.2 1.3E-10 2.8E-15 104.8 11.7 94 112-210 49-172 (521)
77 cd03003 PDI_a_ERdj5_N PDIa fam 99.2 2.7E-11 5.9E-16 86.5 5.9 46 231-277 2-47 (101)
78 cd02995 PDI_a_PDI_a'_C PDIa fa 99.2 4.6E-11 9.9E-16 85.6 5.7 47 231-277 1-47 (104)
79 PF01216 Calsequestrin: Calseq 99.2 7.6E-10 1.6E-14 92.5 12.9 187 2-217 173-374 (383)
80 TIGR00412 redox_disulf_2 small 99.2 1.7E-10 3.8E-15 77.7 7.6 72 124-207 3-75 (76)
81 cd03002 PDI_a_MPD1_like PDI fa 99.2 6.2E-11 1.3E-15 85.8 5.7 46 232-277 2-47 (109)
82 cd02992 PDI_a_QSOX PDIa family 99.1 7.2E-11 1.6E-15 86.2 5.9 47 231-277 2-48 (114)
83 PRK00293 dipZ thiol:disulfide 99.1 1.9E-10 4.2E-15 106.2 9.9 98 108-211 460-570 (571)
84 KOG1731|consensus 99.1 5.4E-11 1.2E-15 105.2 5.9 110 98-212 36-154 (606)
85 cd02955 SSP411 TRX domain, SSP 99.1 1.6E-10 3.5E-15 85.1 7.2 91 116-210 12-118 (124)
86 TIGR02738 TrbB type-F conjugat 99.1 5.2E-10 1.1E-14 85.6 10.2 88 119-211 50-153 (153)
87 cd03072 PDI_b'_ERp44 PDIb' fam 99.1 2.3E-10 4.9E-15 82.9 7.4 104 105-214 3-111 (111)
88 TIGR02740 TraF-like TraF-like 99.1 4.5E-10 9.7E-15 94.2 9.8 90 118-212 165-265 (271)
89 cd02983 P5_C P5 family, C-term 99.1 1.3E-09 2.7E-14 81.2 11.1 81 134-216 38-120 (130)
90 PF01216 Calsequestrin: Calseq 99.1 5.9E-08 1.3E-12 81.4 21.8 214 11-276 76-296 (383)
91 PF00085 Thioredoxin: Thioredo 99.1 2E-10 4.3E-15 82.0 6.1 46 232-277 1-46 (103)
92 cd02996 PDI_a_ERp44 PDIa famil 99.1 1.6E-10 3.6E-15 83.5 5.7 45 231-276 2-46 (108)
93 cd02954 DIM1 Dim1 family; Dim1 99.1 1.7E-10 3.7E-15 83.1 5.3 41 237-277 2-43 (114)
94 PHA02278 thioredoxin-like prot 99.1 1.5E-10 3.3E-15 82.6 5.0 39 237-276 4-42 (103)
95 cd02993 PDI_a_APS_reductase PD 99.1 2E-10 4.3E-15 83.2 5.4 47 231-277 2-50 (109)
96 PHA02125 thioredoxin-like prot 99.1 7.3E-10 1.6E-14 74.5 7.6 69 123-205 2-71 (75)
97 cd02962 TMX2 TMX2 family; comp 99.1 4.1E-10 8.8E-15 85.9 6.8 57 220-277 19-76 (152)
98 KOG0912|consensus 99.1 6.6E-09 1.4E-13 85.3 14.1 203 6-263 28-242 (375)
99 cd02985 TRX_CDSP32 TRX family, 99.0 2.8E-10 6E-15 81.6 5.2 42 236-277 2-44 (103)
100 cd02994 PDI_a_TMX PDIa family, 99.0 3.7E-10 8E-15 80.6 5.6 43 231-276 2-44 (101)
101 cd03008 TryX_like_RdCVF Trypar 99.0 9.1E-10 2E-14 83.3 7.9 74 118-196 24-130 (146)
102 PRK03147 thiol-disulfide oxido 99.0 2.3E-09 4.9E-14 84.3 10.5 88 118-210 60-171 (173)
103 TIGR00385 dsbE periplasmic pro 99.0 2.2E-09 4.7E-14 84.4 10.2 87 118-212 62-172 (173)
104 PRK09381 trxA thioredoxin; Pro 99.0 5.2E-10 1.1E-14 81.0 5.9 48 230-277 3-50 (109)
105 PRK15412 thiol:disulfide inter 99.0 2.7E-09 5.8E-14 84.8 10.3 87 118-212 67-177 (185)
106 cd03010 TlpA_like_DsbE TlpA-li 99.0 1.8E-09 4E-14 80.4 8.5 78 119-203 25-126 (127)
107 PTZ00443 Thioredoxin domain-co 99.0 5.6E-10 1.2E-14 90.6 6.1 49 229-277 29-81 (224)
108 PF13905 Thioredoxin_8: Thiore 99.0 1.4E-09 3E-14 76.7 7.3 67 119-190 1-94 (95)
109 cd02957 Phd_like Phosducin (Ph 99.0 5.8E-10 1.3E-14 81.3 5.3 48 230-277 4-53 (113)
110 cd02948 TRX_NDPK TRX domain, T 99.0 7.3E-10 1.6E-14 79.2 5.6 43 234-277 4-46 (102)
111 cd02999 PDI_a_ERp44_like PDIa 99.0 5.9E-10 1.3E-14 79.4 5.1 40 238-277 7-47 (100)
112 cd03001 PDI_a_P5 PDIa family, 99.0 8.6E-10 1.9E-14 78.9 5.9 46 232-277 2-47 (103)
113 cd02973 TRX_GRX_like Thioredox 99.0 1.1E-09 2.4E-14 71.9 6.0 56 123-184 3-58 (67)
114 cd02983 P5_C P5 family, C-term 99.0 5.6E-09 1.2E-13 77.8 10.4 82 5-88 38-121 (130)
115 cd03073 PDI_b'_ERp72_ERp57 PDI 99.0 3.7E-09 8E-14 76.4 9.0 78 4-81 31-110 (111)
116 KOG0907|consensus 99.0 5.2E-10 1.1E-14 79.9 4.4 37 241-277 14-50 (106)
117 cd03072 PDI_b'_ERp44 PDIb' fam 99.0 2.8E-09 6.1E-14 77.2 8.3 81 3-85 26-111 (111)
118 cd03009 TryX_like_TryX_NRX Try 99.0 1.8E-09 4E-14 80.8 7.6 70 118-192 17-113 (131)
119 cd02958 UAS UAS family; UAS is 99.0 3E-09 6.4E-14 77.7 8.3 92 117-212 15-112 (114)
120 cd02964 TryX_like_family Trypa 99.0 2.2E-09 4.8E-14 80.5 7.6 72 118-194 16-115 (132)
121 cd03005 PDI_a_ERp46 PDIa famil 99.0 1.1E-09 2.5E-14 78.1 5.4 44 232-277 2-45 (102)
122 COG3118 Thioredoxin domain-con 99.0 9.3E-10 2E-14 90.6 5.4 48 230-277 23-72 (304)
123 cd03073 PDI_b'_ERp72_ERp57 PDI 98.9 4.9E-09 1.1E-13 75.8 8.0 72 138-211 36-111 (111)
124 PLN02919 haloacid dehalogenase 98.9 1.1E-08 2.5E-13 100.7 12.9 90 118-212 419-537 (1057)
125 cd02956 ybbN ybbN protein fami 98.9 1.6E-09 3.5E-14 76.5 5.0 40 238-277 1-41 (96)
126 cd02963 TRX_DnaJ TRX domain, D 98.9 1.3E-09 2.9E-14 79.1 4.6 44 234-277 8-53 (111)
127 cd02998 PDI_a_ERp38 PDIa famil 98.9 2.3E-09 5E-14 76.8 5.4 46 232-277 2-47 (105)
128 cd03011 TlpA_like_ScsD_MtbDsbE 98.9 9.1E-09 2E-13 76.1 8.4 80 119-205 20-120 (123)
129 PLN00410 U5 snRNP protein, DIM 98.9 2.9E-09 6.2E-14 79.8 5.3 42 236-277 10-52 (142)
130 PRK13728 conjugal transfer pro 98.9 1.9E-08 4E-13 78.5 9.8 85 123-212 73-172 (181)
131 cd02966 TlpA_like_family TlpA- 98.9 1.2E-08 2.7E-13 73.7 8.2 73 119-196 19-116 (116)
132 TIGR00424 APS_reduc 5'-adenyly 98.9 3.7E-09 8E-14 94.2 6.3 49 229-277 350-400 (463)
133 cd02986 DLP Dim1 family, Dim1- 98.8 4.6E-09 1E-13 75.2 5.0 40 238-277 3-43 (114)
134 TIGR03143 AhpF_homolog putativ 98.8 7.1E-08 1.5E-12 89.5 14.1 168 7-207 382-554 (555)
135 cd03065 PDI_b_Calsequestrin_N 98.8 4.6E-09 1E-13 76.8 4.8 49 229-277 8-60 (120)
136 cd03026 AhpF_NTD_C TRX-GRX-lik 98.8 2.4E-08 5.2E-13 69.3 8.1 74 121-204 14-87 (89)
137 cd02967 mauD Methylamine utili 98.8 1.5E-08 3.2E-13 73.9 7.4 39 119-158 21-59 (114)
138 PLN02309 5'-adenylylsulfate re 98.8 6.1E-09 1.3E-13 92.8 6.1 50 228-277 343-394 (457)
139 PRK11509 hydrogenase-1 operon 98.8 2.8E-08 6E-13 73.3 8.5 99 109-213 25-126 (132)
140 cd02997 PDI_a_PDIR PDIa family 98.8 8.6E-09 1.9E-13 73.7 5.6 45 232-277 2-46 (104)
141 cd02989 Phd_like_TxnDC9 Phosdu 98.8 9.4E-09 2E-13 74.8 5.6 47 230-277 4-51 (113)
142 PTZ00056 glutathione peroxidas 98.8 3.1E-08 6.7E-13 79.5 8.6 94 118-212 38-179 (199)
143 cd02960 AGR Anterior Gradient 98.8 2.3E-08 5E-13 73.7 6.8 70 116-190 20-91 (130)
144 cd02987 Phd_like_Phd Phosducin 98.8 1.4E-08 3.1E-13 79.6 5.7 49 229-277 61-112 (175)
145 PLN02399 phospholipid hydroper 98.7 8E-08 1.7E-12 78.6 10.0 94 118-212 98-235 (236)
146 TIGR03143 AhpF_homolog putativ 98.7 1.1E-07 2.3E-12 88.3 12.1 144 111-276 357-504 (555)
147 smart00594 UAS UAS domain. 98.7 4.4E-08 9.6E-13 72.3 7.7 87 117-207 25-121 (122)
148 cd03012 TlpA_like_DipZ_like Tl 98.7 5.6E-08 1.2E-12 72.3 8.3 74 118-196 22-124 (126)
149 TIGR01126 pdi_dom protein disu 98.7 1.5E-08 3.3E-13 72.1 4.8 42 235-277 1-42 (102)
150 TIGR02661 MauD methylamine deh 98.7 1.1E-07 2.4E-12 75.8 10.0 90 118-213 73-181 (189)
151 cd02988 Phd_like_VIAF Phosduci 98.7 2.2E-08 4.8E-13 79.6 5.7 50 228-277 80-131 (192)
152 cd02984 TRX_PICOT TRX domain, 98.7 2.4E-08 5.1E-13 70.6 5.1 40 237-276 2-42 (97)
153 cd03000 PDI_a_TMX3 PDIa family 98.7 1.8E-08 3.9E-13 72.2 4.2 39 237-277 6-44 (104)
154 cd02982 PDI_b'_family Protein 98.7 1.3E-07 2.9E-12 67.5 8.5 75 5-81 26-102 (103)
155 PF13899 Thioredoxin_7: Thiore 98.7 3.1E-08 6.6E-13 67.8 4.9 65 117-187 15-82 (82)
156 TIGR01295 PedC_BrcD bacterioci 98.7 3.6E-08 7.9E-13 72.7 5.5 44 232-276 8-51 (122)
157 PRK10996 thioredoxin 2; Provis 98.7 4.6E-08 9.9E-13 74.0 5.8 46 230-276 35-80 (139)
158 KOG0911|consensus 98.7 5.8E-08 1.3E-12 76.8 6.5 148 118-276 16-170 (227)
159 TIGR01068 thioredoxin thioredo 98.6 4.6E-08 9.9E-13 69.4 5.1 43 235-277 1-43 (101)
160 TIGR02540 gpx7 putative glutat 98.6 2.9E-07 6.2E-12 70.8 9.3 92 118-210 21-152 (153)
161 PF08534 Redoxin: Redoxin; In 98.6 2.7E-07 5.8E-12 70.3 9.0 77 118-199 27-136 (146)
162 PTZ00051 thioredoxin; Provisio 98.6 8.7E-08 1.9E-12 67.8 5.8 41 236-277 7-47 (98)
163 cd02969 PRX_like1 Peroxiredoxi 98.6 5.5E-07 1.2E-11 70.6 10.7 92 118-214 24-155 (171)
164 cd02965 HyaE HyaE family; HyaE 98.6 8.2E-08 1.8E-12 68.8 5.3 43 234-277 14-58 (111)
165 PF13848 Thioredoxin_6: Thiore 98.6 1.2E-06 2.6E-11 69.3 12.6 113 140-277 10-124 (184)
166 cd02952 TRP14_like Human TRX-r 98.6 7.6E-08 1.7E-12 70.2 4.8 42 236-277 8-57 (119)
167 cd02950 TxlA TRX-like protein 98.6 6.6E-08 1.4E-12 73.3 4.6 39 238-277 11-49 (142)
168 KOG1731|consensus 98.6 1.5E-08 3.2E-13 90.1 1.0 50 228-277 37-86 (606)
169 cd02961 PDI_a_family Protein D 98.6 1.1E-07 2.3E-12 67.2 5.1 43 234-277 2-44 (101)
170 PLN02412 probable glutathione 98.5 7.9E-07 1.7E-11 69.4 9.4 94 118-212 28-165 (167)
171 cd03007 PDI_a_ERp29_N PDIa fam 98.5 1.7E-07 3.8E-12 67.8 4.7 43 232-275 3-50 (116)
172 COG4232 Thiol:disulfide interc 98.5 2.9E-07 6.2E-12 82.8 7.1 86 120-210 475-567 (569)
173 cd00340 GSH_Peroxidase Glutath 98.5 4.5E-07 9.8E-12 69.7 7.2 41 118-160 21-62 (152)
174 cd02953 DsbDgamma DsbD gamma f 98.5 1.4E-07 3.1E-12 67.5 4.0 38 238-276 2-42 (104)
175 KOG0914|consensus 98.5 1.8E-07 4E-12 73.3 4.3 91 101-192 124-219 (265)
176 cd02959 ERp19 Endoplasmic reti 98.5 2.3E-07 4.9E-12 67.9 4.5 32 244-275 15-46 (117)
177 TIGR01626 ytfJ_HI0045 conserve 98.5 1.3E-06 2.8E-11 68.6 8.9 81 119-207 59-176 (184)
178 cd02949 TRX_NTR TRX domain, no 98.5 3.2E-07 6.9E-12 64.8 5.1 38 240-277 5-42 (97)
179 KOG4277|consensus 98.4 1E-05 2.2E-10 66.8 13.9 216 7-277 59-284 (468)
180 PF02114 Phosducin: Phosducin; 98.4 1.5E-06 3.3E-11 72.4 8.4 104 100-210 124-237 (265)
181 PTZ00256 glutathione peroxidas 98.3 3.6E-06 7.8E-11 66.7 8.9 93 119-212 40-182 (183)
182 COG0526 TrxA Thiol-disulfide i 98.3 2.8E-06 6.1E-11 61.2 7.7 65 119-188 32-99 (127)
183 TIGR02196 GlrX_YruB Glutaredox 98.3 2.6E-06 5.7E-11 56.4 6.7 69 123-208 2-74 (74)
184 TIGR02738 TrbB type-F conjugat 98.3 7.3E-07 1.6E-11 68.2 4.1 30 248-277 50-79 (153)
185 cd03008 TryX_like_RdCVF Trypar 98.3 8E-07 1.7E-11 67.3 3.9 29 248-276 25-53 (146)
186 cd02981 PDI_b_family Protein D 98.3 3.2E-06 6.9E-11 59.6 6.8 67 6-81 29-97 (97)
187 KOG0913|consensus 98.3 4.2E-07 9E-12 72.3 2.1 102 101-211 24-126 (248)
188 cd02975 PfPDO_like_N Pyrococcu 98.2 8.3E-07 1.8E-11 64.6 3.3 36 240-276 15-50 (113)
189 cd02967 mauD Methylamine utili 98.2 1.3E-06 2.7E-11 63.6 3.7 29 248-276 21-49 (114)
190 PHA02125 thioredoxin-like prot 98.2 1.2E-06 2.5E-11 58.8 3.2 23 252-274 2-24 (75)
191 cd03069 PDI_b_ERp57 PDIb famil 98.2 5.5E-06 1.2E-10 59.3 6.7 67 5-81 29-103 (104)
192 PF13192 Thioredoxin_3: Thiore 98.2 9.2E-06 2E-10 54.5 7.4 70 127-208 6-76 (76)
193 KOG2501|consensus 98.2 3E-06 6.4E-11 63.9 5.3 71 119-194 33-131 (157)
194 cd02951 SoxW SoxW family; SoxW 98.2 2.1E-06 4.5E-11 63.6 4.5 32 240-271 6-37 (125)
195 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 7.8E-06 1.7E-10 60.2 7.3 73 118-191 24-121 (124)
196 cd02947 TRX_family TRX family; 98.2 3.2E-06 6.9E-11 58.3 4.8 37 239-276 2-38 (93)
197 TIGR00412 redox_disulf_2 small 98.1 1.8E-06 3.9E-11 58.0 3.1 25 253-277 3-27 (76)
198 cd01659 TRX_superfamily Thiore 98.1 8.2E-06 1.8E-10 51.8 6.2 60 123-188 1-63 (69)
199 PF13728 TraF: F plasmid trans 98.1 1.4E-05 3.1E-10 64.7 8.8 83 119-206 120-213 (215)
200 COG2143 Thioredoxin-related pr 98.1 1.7E-05 3.6E-10 59.3 8.2 92 117-213 40-151 (182)
201 PTZ00062 glutaredoxin; Provisi 98.1 2.6E-05 5.6E-10 62.5 9.5 139 4-184 30-174 (204)
202 cd03017 PRX_BCP Peroxiredoxin 98.1 1.6E-05 3.4E-10 60.0 7.7 82 119-205 23-137 (140)
203 cd02964 TryX_like_family Trypa 98.1 3.8E-06 8.2E-11 62.9 3.8 29 248-276 17-45 (132)
204 cd03068 PDI_b_ERp72 PDIb famil 98.0 1.3E-05 2.9E-10 57.5 6.0 67 6-81 31-107 (107)
205 PF03190 Thioredox_DsbH: Prote 98.0 1.2E-05 2.6E-10 61.6 6.0 73 116-192 34-116 (163)
206 PRK15317 alkyl hydroperoxide r 98.0 0.0001 2.3E-09 68.0 13.3 132 50-209 61-196 (517)
207 TIGR02739 TraF type-F conjugat 98.0 4.2E-05 9.1E-10 63.3 9.4 89 119-212 150-249 (256)
208 cd03015 PRX_Typ2cys Peroxiredo 98.0 4.5E-05 9.7E-10 59.9 9.1 92 118-210 28-156 (173)
209 cd03009 TryX_like_TryX_NRX Try 98.0 5.7E-06 1.2E-10 61.8 3.8 29 248-276 18-46 (131)
210 TIGR02200 GlrX_actino Glutared 98.0 1.8E-05 3.9E-10 53.0 5.6 70 123-208 2-76 (77)
211 cd03066 PDI_b_Calsequestrin_mi 98.0 3.2E-05 7E-10 55.1 7.1 70 5-82 30-101 (102)
212 cd03067 PDI_b_PDIR_N PDIb fami 98.0 2.8E-05 6E-10 53.6 6.1 75 5-81 32-111 (112)
213 cd03010 TlpA_like_DsbE TlpA-li 98.0 9.2E-06 2E-10 60.3 4.2 30 248-277 25-54 (127)
214 PRK14018 trifunctional thiored 98.0 9.7E-06 2.1E-10 73.6 5.0 33 245-277 53-85 (521)
215 TIGR03140 AhpF alkyl hydropero 98.0 0.00018 3.9E-09 66.4 13.4 133 50-210 62-198 (515)
216 TIGR02180 GRX_euk Glutaredoxin 98.0 1.7E-05 3.8E-10 54.1 5.1 55 123-184 1-60 (84)
217 PRK00522 tpx lipid hydroperoxi 97.9 8.1E-05 1.8E-09 58.1 9.2 42 118-161 43-85 (167)
218 TIGR03137 AhpC peroxiredoxin. 97.9 6.3E-05 1.4E-09 59.8 8.6 92 118-210 30-155 (187)
219 PRK15412 thiol:disulfide inter 97.9 1.2E-05 2.6E-10 63.9 4.4 29 247-275 67-95 (185)
220 PRK13703 conjugal pilus assemb 97.9 0.00011 2.3E-09 60.6 9.5 90 119-213 143-243 (248)
221 KOG2603|consensus 97.9 9.9E-05 2.1E-09 61.5 9.1 108 100-212 39-167 (331)
222 TIGR02740 TraF-like TraF-like 97.9 1.3E-05 2.8E-10 67.4 3.8 31 247-277 165-195 (271)
223 cd02991 UAS_ETEA UAS family, E 97.9 9.5E-05 2.1E-09 53.8 7.9 90 117-212 15-114 (116)
224 PF14595 Thioredoxin_9: Thiore 97.9 7E-05 1.5E-09 55.6 7.3 85 120-208 42-126 (129)
225 PRK10606 btuE putative glutath 97.9 0.00012 2.5E-09 57.9 8.9 140 118-273 24-180 (183)
226 PRK13728 conjugal transfer pro 97.9 1.4E-05 3.1E-10 62.4 3.7 26 252-277 73-98 (181)
227 PF07912 ERp29_N: ERp29, N-ter 97.8 0.00029 6.3E-09 50.7 9.6 104 102-211 5-119 (126)
228 cd03011 TlpA_like_ScsD_MtbDsbE 97.8 2.8E-05 6E-10 57.3 4.5 41 235-276 8-48 (123)
229 cd02973 TRX_GRX_like Thioredox 97.8 1.8E-05 3.9E-10 51.6 2.9 25 252-276 3-27 (67)
230 PRK11509 hydrogenase-1 operon 97.8 0.00013 2.9E-09 53.9 7.7 75 5-85 50-127 (132)
231 cd02970 PRX_like2 Peroxiredoxi 97.8 0.00011 2.4E-09 55.8 7.7 42 120-162 24-67 (149)
232 cd02981 PDI_b_family Protein D 97.8 0.00012 2.6E-09 51.4 7.3 82 116-209 14-96 (97)
233 KOG1672|consensus 97.8 9.5E-05 2.1E-09 57.3 7.0 101 101-208 66-175 (211)
234 PRK15317 alkyl hydroperoxide r 97.8 0.00032 6.9E-09 64.8 11.6 125 119-276 18-144 (517)
235 PF05768 DUF836: Glutaredoxin- 97.8 0.00014 3E-09 49.4 7.0 78 123-208 2-81 (81)
236 PRK10382 alkyl hydroperoxide r 97.8 0.00027 5.9E-09 56.1 9.6 93 118-211 30-156 (187)
237 cd03012 TlpA_like_DipZ_like Tl 97.8 3E-05 6.6E-10 57.4 3.9 30 248-277 23-52 (126)
238 TIGR00385 dsbE periplasmic pro 97.7 3.5E-05 7.6E-10 60.5 4.2 29 247-275 62-90 (173)
239 PRK13190 putative peroxiredoxi 97.7 0.0003 6.4E-09 56.7 9.3 93 119-212 27-155 (202)
240 KOG3414|consensus 97.7 0.00043 9.4E-09 49.8 8.6 93 118-215 22-124 (142)
241 PRK11200 grxA glutaredoxin 1; 97.7 0.00012 2.6E-09 50.2 5.6 76 122-211 2-83 (85)
242 PRK15000 peroxidase; Provision 97.7 0.00033 7.3E-09 56.2 9.0 93 118-211 33-162 (200)
243 PRK09437 bcp thioredoxin-depen 97.7 0.00044 9.5E-09 53.1 9.2 43 118-161 29-73 (154)
244 PF06110 DUF953: Eukaryotic pr 97.7 0.00024 5.1E-09 51.7 7.1 66 118-188 18-99 (119)
245 PF13899 Thioredoxin_7: Thiore 97.7 3.9E-05 8.4E-10 52.3 2.8 26 245-270 14-39 (82)
246 cd02966 TlpA_like_family TlpA- 97.6 5.5E-05 1.2E-09 54.3 3.7 30 248-277 19-48 (116)
247 cd03018 PRX_AhpE_like Peroxire 97.6 0.00038 8.2E-09 53.0 8.5 41 120-161 29-71 (149)
248 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.0002 4.3E-09 49.4 5.9 98 109-209 10-110 (112)
249 TIGR02661 MauD methylamine deh 97.6 6.7E-05 1.5E-09 59.8 4.2 30 247-276 73-102 (189)
250 cd02968 SCO SCO (an acronym fo 97.6 0.00022 4.7E-09 53.8 6.2 43 118-161 21-68 (142)
251 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00034 7.4E-09 45.9 6.4 67 123-206 2-72 (73)
252 PRK03147 thiol-disulfide oxido 97.6 0.00011 2.3E-09 57.5 4.5 46 231-277 45-90 (173)
253 PTZ00056 glutathione peroxidas 97.5 7.5E-05 1.6E-09 59.9 3.4 30 248-277 39-68 (199)
254 PF08534 Redoxin: Redoxin; In 97.5 0.00011 2.4E-09 55.8 3.9 30 247-276 27-57 (146)
255 COG0526 TrxA Thiol-disulfide i 97.5 0.0001 2.3E-09 52.8 3.6 30 248-277 32-61 (127)
256 cd02960 AGR Anterior Gradient 97.5 0.00013 2.8E-09 53.9 4.0 31 239-269 11-44 (130)
257 PLN02919 haloacid dehalogenase 97.5 0.00011 2.5E-09 72.9 4.2 30 248-277 420-449 (1057)
258 TIGR00411 redox_disulf_1 small 97.4 0.0011 2.3E-08 44.8 7.8 67 6-81 14-81 (82)
259 cd02955 SSP411 TRX domain, SSP 97.4 0.00014 3E-09 53.6 3.5 30 238-268 6-35 (124)
260 PTZ00137 2-Cys peroxiredoxin; 97.4 0.001 2.2E-08 55.4 8.9 93 118-211 97-225 (261)
261 PLN02399 phospholipid hydroper 97.4 0.00013 2.7E-09 59.9 3.5 30 248-277 99-128 (236)
262 cd03016 PRX_1cys Peroxiredoxin 97.4 0.00099 2.1E-08 53.7 8.7 89 122-211 29-154 (203)
263 cd03014 PRX_Atyp2cys Peroxired 97.4 0.00038 8.2E-09 52.7 5.8 42 118-161 25-67 (143)
264 TIGR02540 gpx7 putative glutat 97.4 0.00014 3E-09 55.9 3.2 30 248-277 22-51 (153)
265 cd02971 PRX_family Peroxiredox 97.4 0.00094 2E-08 50.1 7.7 43 118-161 21-65 (140)
266 TIGR02183 GRXA Glutaredoxin, G 97.4 0.00039 8.5E-09 47.8 5.0 75 123-211 2-82 (86)
267 TIGR03140 AhpF alkyl hydropero 97.4 0.0024 5.2E-08 59.0 11.6 126 120-276 19-145 (515)
268 PLN02412 probable glutathione 97.4 0.00017 3.8E-09 56.2 3.3 30 248-277 29-58 (167)
269 PRK00293 dipZ thiol:disulfide 97.4 0.00024 5.1E-09 66.2 4.8 35 236-270 459-496 (571)
270 TIGR02200 GlrX_actino Glutared 97.3 0.00016 3.6E-09 48.2 2.6 25 252-276 2-26 (77)
271 PRK13599 putative peroxiredoxi 97.3 0.0015 3.4E-08 53.0 8.0 91 119-210 28-155 (215)
272 PRK11657 dsbG disulfide isomer 97.2 0.002 4.4E-08 53.6 8.7 83 119-208 117-249 (251)
273 PF07912 ERp29_N: ERp29, N-ter 97.2 0.0031 6.7E-08 45.5 8.2 73 9-83 37-120 (126)
274 cd03074 PDI_b'_Calsequestrin_C 97.2 0.0067 1.5E-07 42.5 9.2 90 118-211 19-120 (120)
275 PF00462 Glutaredoxin: Glutare 97.2 0.0017 3.8E-08 41.1 6.1 51 123-184 1-55 (60)
276 PRK13189 peroxiredoxin; Provis 97.2 0.0026 5.6E-08 52.0 8.3 93 118-211 34-163 (222)
277 TIGR01626 ytfJ_HI0045 conserve 97.1 0.00036 7.8E-09 54.9 3.0 28 248-275 59-86 (184)
278 KOG3425|consensus 97.1 0.0026 5.6E-08 45.5 6.9 63 120-187 26-104 (128)
279 PRK10329 glutaredoxin-like pro 97.1 0.0042 9.2E-08 42.1 7.7 73 123-212 3-78 (81)
280 PRK13191 putative peroxiredoxi 97.1 0.003 6.4E-08 51.4 8.1 92 118-210 32-160 (215)
281 cd03419 GRX_GRXh_1_2_like Glut 97.0 0.0015 3.4E-08 44.1 5.2 53 123-184 2-59 (82)
282 PTZ00256 glutathione peroxidas 97.0 0.00067 1.5E-08 53.7 3.5 30 248-277 40-70 (183)
283 TIGR02194 GlrX_NrdH Glutaredox 97.0 0.0031 6.8E-08 41.6 6.0 66 124-205 2-70 (72)
284 KOG2501|consensus 96.9 0.00049 1.1E-08 52.1 2.0 28 248-275 33-60 (157)
285 PTZ00253 tryparedoxin peroxida 96.9 0.0061 1.3E-07 48.9 8.2 91 119-210 36-163 (199)
286 cd03026 AhpF_NTD_C TRX-GRX-lik 96.9 0.0013 2.8E-08 45.5 3.5 27 251-277 15-41 (89)
287 cd02968 SCO SCO (an acronym fo 96.8 0.0012 2.6E-08 49.7 3.4 31 247-277 21-52 (142)
288 PF14595 Thioredoxin_9: Thiore 96.8 0.0021 4.5E-08 47.8 4.6 40 237-276 30-69 (129)
289 PRK10877 protein disulfide iso 96.8 0.007 1.5E-07 49.8 8.0 80 119-210 107-230 (232)
290 cd03066 PDI_b_Calsequestrin_mi 96.8 0.0081 1.8E-07 42.6 7.3 89 110-210 10-100 (102)
291 PF00578 AhpC-TSA: AhpC/TSA fa 96.8 0.0017 3.8E-08 47.5 3.9 30 247-276 24-54 (124)
292 PF11009 DUF2847: Protein of u 96.8 0.0087 1.9E-07 42.4 7.0 92 109-204 8-105 (105)
293 PF02966 DIM1: Mitosis protein 96.8 0.0089 1.9E-07 43.7 7.2 91 117-213 18-119 (133)
294 TIGR02196 GlrX_YruB Glutaredox 96.7 0.001 2.2E-08 43.7 2.0 23 252-274 2-24 (74)
295 cd02970 PRX_like2 Peroxiredoxi 96.7 0.0023 4.9E-08 48.5 4.1 29 249-277 24-53 (149)
296 cd02066 GRX_family Glutaredoxi 96.7 0.0044 9.5E-08 40.3 5.0 51 123-184 2-56 (72)
297 TIGR02190 GlrX-dom Glutaredoxi 96.7 0.0049 1.1E-07 41.5 5.2 54 120-184 7-63 (79)
298 KOG3170|consensus 96.6 0.017 3.7E-07 45.3 8.2 123 76-209 68-199 (240)
299 KOG0914|consensus 96.5 0.003 6.6E-08 50.1 3.7 48 230-277 124-173 (265)
300 PHA03050 glutaredoxin; Provisi 96.5 0.0055 1.2E-07 44.0 4.8 55 122-184 14-75 (108)
301 cd03020 DsbA_DsbC_DsbG DsbA fa 96.4 0.01 2.2E-07 47.5 6.6 76 119-207 77-197 (197)
302 cd03027 GRX_DEP Glutaredoxin ( 96.4 0.012 2.6E-07 38.8 5.6 52 123-185 3-58 (73)
303 TIGR02189 GlrX-like_plant Glut 96.4 0.0087 1.9E-07 42.2 5.1 53 121-184 8-67 (99)
304 PRK00522 tpx lipid hydroperoxi 96.4 0.0038 8.2E-08 48.6 3.5 30 248-277 44-74 (167)
305 cd03018 PRX_AhpE_like Peroxire 96.4 0.0036 7.8E-08 47.5 3.3 29 249-277 29-58 (149)
306 TIGR02181 GRX_bact Glutaredoxi 96.3 0.0081 1.7E-07 40.3 4.6 51 123-184 1-55 (79)
307 cd03418 GRX_GRXb_1_3_like Glut 96.3 0.013 2.9E-07 38.7 5.5 52 123-184 2-57 (75)
308 cd03014 PRX_Atyp2cys Peroxired 96.3 0.0043 9.3E-08 46.8 3.4 30 248-277 26-56 (143)
309 KOG0913|consensus 96.2 0.00086 1.9E-08 53.8 -0.9 42 231-275 25-66 (248)
310 cd03015 PRX_Typ2cys Peroxiredo 96.1 0.0051 1.1E-07 48.2 3.0 30 248-277 29-59 (173)
311 cd02972 DsbA_family DsbA famil 96.0 0.024 5.1E-07 39.1 5.9 59 123-186 1-91 (98)
312 cd02976 NrdH NrdH-redoxin (Nrd 96.0 0.0057 1.2E-07 39.9 2.5 23 252-274 2-24 (73)
313 cd03029 GRX_hybridPRX5 Glutare 95.9 0.028 6E-07 36.9 5.6 66 123-207 3-71 (72)
314 TIGR03137 AhpC peroxiredoxin. 95.9 0.0066 1.4E-07 48.2 2.9 30 248-277 31-61 (187)
315 cd01659 TRX_superfamily Thiore 95.9 0.0072 1.6E-07 37.6 2.6 22 252-273 1-22 (69)
316 PF07449 HyaE: Hydrogenase-1 e 95.9 0.026 5.6E-07 40.2 5.5 83 101-189 9-93 (107)
317 TIGR02190 GlrX-dom Glutaredoxi 95.8 0.0092 2E-07 40.1 2.9 29 248-276 6-34 (79)
318 cd02066 GRX_family Glutaredoxi 95.8 0.0081 1.8E-07 38.9 2.5 24 252-275 2-25 (72)
319 cd02971 PRX_family Peroxiredox 95.8 0.0091 2E-07 44.7 3.0 31 247-277 21-52 (140)
320 COG0695 GrxC Glutaredoxin and 95.7 0.029 6.3E-07 37.8 5.1 53 123-186 3-61 (80)
321 KOG2640|consensus 95.7 0.0086 1.9E-07 50.2 2.9 87 120-212 77-163 (319)
322 cd03017 PRX_BCP Peroxiredoxin 95.6 0.012 2.6E-07 44.0 3.3 29 248-276 23-52 (140)
323 PF00837 T4_deiodinase: Iodoth 95.6 0.2 4.4E-06 40.8 10.3 88 69-160 53-142 (237)
324 PF00462 Glutaredoxin: Glutare 95.6 0.01 2.2E-07 37.5 2.4 24 252-275 1-24 (60)
325 cd03069 PDI_b_ERp57 PDIb famil 95.6 0.12 2.6E-06 36.7 8.2 79 119-210 18-103 (104)
326 PRK10638 glutaredoxin 3; Provi 95.3 0.039 8.4E-07 37.4 4.7 51 123-184 4-58 (83)
327 cd03028 GRX_PICOT_like Glutare 95.3 0.03 6.5E-07 38.7 4.1 45 129-184 21-69 (90)
328 smart00594 UAS UAS domain. 95.3 0.027 5.9E-07 41.3 4.1 31 238-268 14-47 (122)
329 TIGR02189 GlrX-like_plant Glut 95.2 0.017 3.6E-07 40.8 2.7 27 250-276 8-34 (99)
330 TIGR00365 monothiol glutaredox 95.2 0.042 9.1E-07 38.6 4.7 46 129-185 25-74 (97)
331 PF06110 DUF953: Eukaryotic pr 95.1 0.053 1.1E-06 39.5 4.9 38 238-275 6-53 (119)
332 cd03068 PDI_b_ERp72 PDIb famil 95.0 0.1 2.2E-06 37.3 6.3 87 111-209 11-106 (107)
333 cd03023 DsbA_Com1_like DsbA fa 95.0 0.056 1.2E-06 40.9 5.2 40 119-160 5-44 (154)
334 PHA03050 glutaredoxin; Provisi 95.0 0.023 5E-07 40.8 2.7 26 250-275 13-38 (108)
335 PF13728 TraF: F plasmid trans 94.8 0.03 6.5E-07 45.5 3.4 30 248-277 120-149 (215)
336 COG4232 Thiol:disulfide interc 94.8 0.029 6.3E-07 51.3 3.4 36 234-269 458-495 (569)
337 PF13462 Thioredoxin_4: Thiore 94.6 0.09 2E-06 40.2 5.5 41 120-161 13-55 (162)
338 PRK10824 glutaredoxin-4; Provi 94.6 0.056 1.2E-06 39.1 4.0 49 129-184 28-76 (115)
339 cd03027 GRX_DEP Glutaredoxin ( 94.6 0.031 6.8E-07 36.8 2.5 24 252-275 3-26 (73)
340 cd03074 PDI_b'_Calsequestrin_C 94.5 0.39 8.5E-06 33.9 7.7 72 7-81 36-119 (120)
341 PRK10382 alkyl hydroperoxide r 94.3 0.042 9.2E-07 43.6 3.1 30 248-277 31-61 (187)
342 cd03019 DsbA_DsbA DsbA family, 94.2 0.093 2E-06 40.9 5.0 42 119-161 15-56 (178)
343 PRK09437 bcp thioredoxin-depen 94.1 0.054 1.2E-06 41.3 3.3 29 248-276 30-59 (154)
344 cd03418 GRX_GRXb_1_3_like Glut 94.0 0.045 9.9E-07 36.0 2.4 24 252-275 2-25 (75)
345 KOG3425|consensus 94.0 0.13 2.8E-06 37.1 4.6 38 238-275 13-60 (128)
346 PRK10329 glutaredoxin-like pro 93.9 0.05 1.1E-06 36.8 2.5 25 251-275 2-26 (81)
347 KOG1752|consensus 93.9 0.24 5.3E-06 35.1 5.9 57 122-184 15-73 (104)
348 KOG3171|consensus 93.8 0.19 4E-06 40.1 5.7 102 102-210 139-250 (273)
349 cd03029 GRX_hybridPRX5 Glutare 93.7 0.068 1.5E-06 35.0 2.7 25 251-275 2-26 (72)
350 PF13192 Thioredoxin_3: Thiore 93.4 0.36 7.9E-06 32.0 5.9 62 6-79 13-76 (76)
351 PRK13703 conjugal pilus assemb 93.0 0.099 2.1E-06 43.2 3.3 30 248-277 143-172 (248)
352 PF13098 Thioredoxin_2: Thiore 92.8 0.27 5.8E-06 35.1 5.0 68 7-78 21-112 (112)
353 TIGR02194 GlrX_NrdH Glutaredox 92.7 0.086 1.9E-06 34.6 2.0 23 253-275 2-24 (72)
354 PRK15000 peroxidase; Provision 92.6 0.11 2.5E-06 41.6 3.0 38 238-277 26-64 (200)
355 PRK12759 bifunctional gluaredo 92.5 0.29 6.2E-06 43.9 5.7 35 123-164 4-38 (410)
356 TIGR02739 TraF type-F conjugat 92.4 0.13 2.8E-06 42.8 3.2 30 248-277 150-179 (256)
357 COG1331 Highly conserved prote 92.3 0.28 6E-06 46.0 5.4 75 117-192 41-122 (667)
358 PRK10638 glutaredoxin 3; Provi 92.3 0.13 2.9E-06 34.7 2.7 24 252-275 4-27 (83)
359 TIGR00365 monothiol glutaredox 92.2 0.11 2.5E-06 36.4 2.2 20 257-276 24-43 (97)
360 cd03020 DsbA_DsbC_DsbG DsbA fa 91.9 0.16 3.6E-06 40.5 3.2 25 248-272 77-101 (197)
361 PF03190 Thioredox_DsbH: Prote 91.7 0.14 3.1E-06 39.4 2.4 33 235-268 25-57 (163)
362 COG1225 Bcp Peroxiredoxin [Pos 91.6 2.6 5.7E-05 32.3 9.2 92 118-210 29-155 (157)
363 cd03071 PDI_b'_NRX PDIb' famil 91.5 1.8 3.9E-05 30.6 7.4 88 120-211 15-115 (116)
364 cd03028 GRX_PICOT_like Glutare 91.3 0.17 3.8E-06 34.8 2.4 19 258-276 21-39 (90)
365 PRK10877 protein disulfide iso 91.3 0.29 6.4E-06 40.2 4.1 28 248-275 107-134 (232)
366 PRK10824 glutaredoxin-4; Provi 91.0 0.2 4.4E-06 36.2 2.6 19 258-276 28-46 (115)
367 PRK10954 periplasmic protein d 90.9 0.36 7.7E-06 38.9 4.2 41 119-160 37-80 (207)
368 COG0695 GrxC Glutaredoxin and 90.7 0.23 5E-06 33.4 2.5 25 252-276 3-27 (80)
369 PTZ00137 2-Cys peroxiredoxin; 90.6 0.25 5.3E-06 41.3 3.0 30 248-277 98-128 (261)
370 cd02958 UAS UAS family; UAS is 90.0 1.8 4E-05 31.0 6.9 65 15-83 44-112 (114)
371 PRK13191 putative peroxiredoxi 89.1 0.35 7.5E-06 39.3 2.7 30 248-277 33-63 (215)
372 PTZ00253 tryparedoxin peroxida 89.0 0.38 8.1E-06 38.6 2.9 30 248-277 36-66 (199)
373 cd02991 UAS_ETEA UAS family, E 88.4 0.49 1.1E-05 34.3 2.9 22 245-266 14-39 (116)
374 PRK11657 dsbG disulfide isomer 88.3 0.65 1.4E-05 38.7 4.0 28 247-274 116-143 (251)
375 cd02977 ArsC_family Arsenate R 87.5 0.56 1.2E-05 33.2 2.7 76 124-210 2-86 (105)
376 KOG0908|consensus 87.3 2.3 5.1E-05 34.9 6.3 71 6-85 36-109 (288)
377 PF02114 Phosducin: Phosducin; 87.2 1.1 2.4E-05 37.6 4.7 49 229-277 124-175 (265)
378 cd00340 GSH_Peroxidase Glutath 86.6 0.45 9.7E-06 36.2 1.9 17 248-264 22-38 (152)
379 PF11009 DUF2847: Protein of u 86.5 2.1 4.6E-05 30.4 5.1 64 7-75 35-105 (105)
380 cd03013 PRX5_like Peroxiredoxi 85.8 1.4 3E-05 33.7 4.2 53 119-172 29-88 (155)
381 cd02978 KaiB_like KaiB-like fa 85.5 2.6 5.7E-05 27.6 4.8 58 122-184 3-61 (72)
382 PRK13189 peroxiredoxin; Provis 84.9 0.68 1.5E-05 37.8 2.3 30 248-277 35-65 (222)
383 KOG2603|consensus 84.8 4.4 9.6E-05 34.5 6.9 76 8-87 81-171 (331)
384 PRK10954 periplasmic protein d 84.3 1 2.2E-05 36.3 3.0 22 249-270 38-59 (207)
385 KOG2792|consensus 82.6 11 0.00023 31.4 8.0 90 119-211 139-275 (280)
386 cd03031 GRX_GRX_like Glutaredo 82.3 3.3 7.1E-05 31.4 4.9 56 123-185 2-67 (147)
387 PF00837 T4_deiodinase: Iodoth 82.3 5.6 0.00012 32.6 6.4 77 198-277 53-131 (237)
388 TIGR02654 circ_KaiB circadian 82.0 5.7 0.00012 27.1 5.4 73 121-199 4-77 (87)
389 PF13743 Thioredoxin_5: Thiore 81.8 2.4 5.3E-05 33.2 4.2 34 125-159 2-35 (176)
390 KOG0911|consensus 81.7 18 0.0004 29.3 9.0 50 7-60 33-82 (227)
391 PHA03075 glutaredoxin-like pro 81.7 1.8 3.9E-05 31.0 3.0 30 120-150 2-31 (123)
392 KOG1752|consensus 80.3 1.5 3.4E-05 31.0 2.3 25 250-274 14-38 (104)
393 cd03060 GST_N_Omega_like GST_N 80.2 1.5 3.3E-05 28.3 2.2 23 253-275 2-24 (71)
394 PRK09301 circadian clock prote 79.9 6.9 0.00015 27.6 5.4 74 120-199 6-80 (103)
395 cd03041 GST_N_2GST_N GST_N fam 77.6 16 0.00035 23.9 6.6 69 124-209 3-75 (77)
396 cd03040 GST_N_mPGES2 GST_N fam 75.4 19 0.00042 23.3 7.4 73 123-211 2-76 (77)
397 cd03036 ArsC_like Arsenate Red 75.0 4.9 0.00011 28.8 3.7 33 124-163 2-34 (111)
398 PF13778 DUF4174: Domain of un 74.9 29 0.00063 25.1 8.2 43 165-210 68-111 (118)
399 cd03035 ArsC_Yffb Arsenate Red 74.1 5.2 0.00011 28.4 3.6 33 124-163 2-34 (105)
400 COG0386 BtuE Glutathione perox 73.4 11 0.00024 28.7 5.3 60 118-184 24-96 (162)
401 cd03071 PDI_b'_NRX PDIb' famil 73.0 31 0.00067 24.5 7.1 56 24-82 58-115 (116)
402 KOG2507|consensus 72.1 31 0.00067 30.9 8.4 90 118-212 17-112 (506)
403 PF05768 DUF836: Glutaredoxin- 71.9 4.1 8.8E-05 27.3 2.6 24 252-275 2-25 (81)
404 cd03051 GST_N_GTT2_like GST_N 70.8 3.1 6.7E-05 26.7 1.8 23 253-275 2-24 (74)
405 cd03040 GST_N_mPGES2 GST_N fam 70.7 4.6 0.0001 26.4 2.6 24 252-275 2-25 (77)
406 COG2761 FrnE Predicted dithiol 70.6 11 0.00025 30.6 5.2 45 165-217 175-219 (225)
407 PRK01655 spxA transcriptional 69.9 8 0.00017 28.6 4.0 34 123-163 2-35 (131)
408 TIGR02742 TrbC_Ftype type-F co 69.5 10 0.00022 28.1 4.4 42 163-208 60-112 (130)
409 cd00570 GST_N_family Glutathio 68.9 3.6 7.7E-05 25.6 1.7 22 254-275 3-24 (71)
410 PF04134 DUF393: Protein of un 68.7 9.4 0.0002 27.2 4.1 60 126-190 2-61 (114)
411 cd02974 AhpF_NTD_N Alkyl hydro 68.7 36 0.00078 23.6 8.9 73 120-210 19-93 (94)
412 cd03059 GST_N_SspA GST_N famil 68.3 4.3 9.3E-05 26.1 2.0 23 253-275 2-24 (73)
413 TIGR01617 arsC_related transcr 67.8 8 0.00017 27.9 3.5 33 124-163 2-34 (117)
414 cd03013 PRX5_like Peroxiredoxi 67.7 4.8 0.0001 30.7 2.5 28 249-276 30-59 (155)
415 COG3019 Predicted metal-bindin 67.6 31 0.00068 25.8 6.4 78 121-210 26-103 (149)
416 cd03070 PDI_b_ERp44 PDIb famil 66.7 17 0.00038 25.0 4.8 52 9-70 31-85 (91)
417 COG4545 Glutaredoxin-related p 66.2 4.3 9.3E-05 26.7 1.6 25 253-277 5-29 (85)
418 KOG3170|consensus 65.2 19 0.00042 28.7 5.3 49 229-277 90-140 (240)
419 KOG3414|consensus 64.5 39 0.00085 24.8 6.3 75 9-86 41-124 (142)
420 PRK12559 transcriptional regul 64.1 13 0.00029 27.5 4.1 34 123-163 2-35 (131)
421 cd03041 GST_N_2GST_N GST_N fam 63.6 5.2 0.00011 26.3 1.7 23 253-275 3-25 (77)
422 cd03045 GST_N_Delta_Epsilon GS 62.8 5.6 0.00012 25.6 1.8 24 253-276 2-25 (74)
423 cd03037 GST_N_GRX2 GST_N famil 62.0 5.1 0.00011 25.7 1.4 22 254-275 3-24 (71)
424 COG1999 Uncharacterized protei 61.8 28 0.00061 28.0 6.0 54 118-172 66-127 (207)
425 PF07449 HyaE: Hydrogenase-1 e 61.3 18 0.0004 25.7 4.2 48 5-56 42-90 (107)
426 cd02990 UAS_FAF1 UAS family, F 60.1 70 0.0015 23.9 8.6 87 119-211 21-133 (136)
427 cd03032 ArsC_Spx Arsenate Redu 59.9 19 0.00042 25.8 4.3 34 123-163 2-35 (115)
428 PF13462 Thioredoxin_4: Thiore 58.5 16 0.00036 27.5 4.0 36 165-209 127-162 (162)
429 PRK13344 spxA transcriptional 57.9 20 0.00044 26.5 4.2 34 123-163 2-35 (132)
430 COG2143 Thioredoxin-related pr 57.9 13 0.00028 28.5 3.0 24 246-269 40-63 (182)
431 PF02630 SCO1-SenC: SCO1/SenC; 56.1 33 0.00071 26.7 5.3 54 118-172 51-111 (174)
432 PF13417 GST_N_3: Glutathione 53.1 59 0.0013 20.9 7.3 70 125-212 1-72 (75)
433 cd03025 DsbA_FrnE_like DsbA fa 52.6 24 0.00052 27.5 4.2 29 123-152 3-31 (193)
434 PF01323 DSBA: DSBA-like thior 50.9 19 0.00041 28.1 3.3 37 164-208 157-193 (193)
435 PF02966 DIM1: Mitosis protein 50.0 56 0.0012 24.2 5.2 40 237-276 8-48 (133)
436 PF09673 TrbC_Ftype: Type-F co 49.1 30 0.00065 24.8 3.8 21 163-187 60-80 (113)
437 PF00255 GSHPx: Glutathione pe 49.1 57 0.0012 23.3 5.1 44 118-163 20-64 (108)
438 PF07689 KaiB: KaiB domain; I 48.0 15 0.00033 24.8 1.9 53 126-183 3-56 (82)
439 PF01323 DSBA: DSBA-like thior 46.2 44 0.00096 25.9 4.8 36 123-159 2-38 (193)
440 PF04592 SelP_N: Selenoprotein 45.8 27 0.00059 28.6 3.4 44 117-161 24-71 (238)
441 COG1651 DsbG Protein-disulfide 43.3 28 0.00061 28.5 3.3 25 249-273 85-109 (244)
442 PF13743 Thioredoxin_5: Thiore 42.9 17 0.00037 28.4 1.8 27 8-34 13-39 (176)
443 COG3011 Predicted thiol-disulf 42.4 93 0.002 23.3 5.5 66 118-188 5-70 (137)
444 cd03056 GST_N_4 GST_N family, 42.0 19 0.00041 22.8 1.7 23 253-275 2-24 (73)
445 PF13905 Thioredoxin_8: Thiore 42.0 85 0.0018 21.0 5.1 28 6-33 16-45 (95)
446 cd03055 GST_N_Omega GST_N fami 40.6 29 0.00062 23.4 2.5 25 251-275 18-42 (89)
447 COG0278 Glutaredoxin-related p 40.5 21 0.00046 25.0 1.8 19 256-274 26-44 (105)
448 PF06053 DUF929: Domain of unk 39.9 34 0.00073 28.5 3.1 69 102-187 45-114 (249)
449 KOG1672|consensus 39.4 66 0.0014 25.7 4.5 47 230-277 66-113 (211)
450 cd03033 ArsC_15kD Arsenate Red 38.4 38 0.00083 24.3 2.9 33 123-162 2-34 (113)
451 KOG2640|consensus 38.4 8.2 0.00018 32.9 -0.6 26 249-274 77-102 (319)
452 KOG3171|consensus 38.2 81 0.0018 25.6 4.9 73 4-82 172-251 (273)
453 COG1756 Mra1 Uncharacterized c 37.9 2.2E+02 0.0048 23.2 7.5 72 181-261 84-159 (223)
454 PF08806 Sep15_SelM: Sep15/Sel 37.4 75 0.0016 21.2 4.0 38 172-210 35-75 (78)
455 cd03034 ArsC_ArsC Arsenate Red 34.6 65 0.0014 23.0 3.7 33 124-163 2-34 (112)
456 COG4837 Uncharacterized protei 33.9 1.6E+02 0.0035 20.4 6.2 81 123-210 7-102 (106)
457 PF07315 DUF1462: Protein of u 33.5 1.6E+02 0.0035 20.2 7.4 72 131-208 9-93 (93)
458 COG0450 AhpC Peroxiredoxin [Po 32.8 2.6E+02 0.0056 22.4 7.6 49 163-211 106-161 (194)
459 COG3019 Predicted metal-bindin 32.7 39 0.00084 25.3 2.2 23 250-272 26-48 (149)
460 KOG1364|consensus 32.5 80 0.0017 27.5 4.3 57 152-212 132-190 (356)
461 PF03227 GILT: Gamma interfero 31.7 1E+02 0.0022 21.8 4.2 30 123-152 3-34 (108)
462 TIGR00014 arsC arsenate reduct 31.0 80 0.0017 22.6 3.6 33 124-163 2-34 (114)
463 cd03023 DsbA_Com1_like DsbA fa 30.6 43 0.00093 24.7 2.3 35 164-207 119-153 (154)
464 PF13778 DUF4174: Domain of un 30.5 2.1E+02 0.0045 20.6 7.2 71 9-81 28-111 (118)
465 COG3634 AhpF Alkyl hydroperoxi 29.8 4.1E+02 0.0088 23.7 9.0 79 121-209 118-196 (520)
466 COG1651 DsbG Protein-disulfide 29.1 59 0.0013 26.6 3.1 38 165-211 206-243 (244)
467 PF11539 DUF3228: Protein of u 28.9 25 0.00055 27.7 0.7 29 234-262 24-55 (197)
468 PF09695 YtfJ_HI0045: Bacteria 28.7 2.6E+02 0.0056 21.5 6.1 47 161-210 110-157 (160)
469 COG0295 Cdd Cytidine deaminase 27.9 35 0.00077 25.4 1.3 14 257-270 85-98 (134)
470 COG1393 ArsC Arsenate reductas 26.4 77 0.0017 22.9 2.8 15 123-137 3-17 (117)
471 PF09499 RE_ApaLI: ApaLI-like 25.6 1.5E+02 0.0033 23.2 4.3 39 235-273 129-168 (191)
472 PHA02151 hypothetical protein 25.4 46 0.001 25.4 1.5 15 247-261 202-216 (217)
473 cd02969 PRX_like1 Peroxiredoxi 25.4 3E+02 0.0066 20.8 7.6 77 8-88 42-158 (171)
474 COG1062 AdhC Zn-dependent alco 25.1 37 0.0008 29.7 1.1 31 232-265 66-96 (366)
475 KOG1422|consensus 24.7 3.8E+02 0.0083 21.7 6.8 68 130-213 20-87 (221)
476 cd03052 GST_N_GDAP1 GST_N fami 23.4 60 0.0013 20.9 1.7 23 253-275 2-24 (73)
477 cd02980 TRX_Fd_family Thioredo 23.0 2.1E+02 0.0046 18.2 6.9 60 5-80 15-76 (77)
478 PRK13730 conjugal transfer pil 22.8 1.5E+02 0.0033 23.8 4.0 40 163-207 151-190 (212)
479 cd03024 DsbA_FrnE DsbA family, 22.5 78 0.0017 24.8 2.5 36 164-207 165-200 (201)
480 COG3411 Ferredoxin [Energy pro 22.5 1.9E+02 0.0042 18.4 3.7 30 179-212 17-46 (64)
481 cd03053 GST_N_Phi GST_N family 21.7 85 0.0018 20.0 2.2 23 252-274 2-24 (76)
482 PF06764 DUF1223: Protein of u 21.3 4.4E+02 0.0095 21.2 9.0 80 123-212 2-99 (202)
483 PF06953 ArsD: Arsenical resis 21.1 3.4E+02 0.0074 19.9 5.4 52 153-211 41-102 (123)
484 PF06053 DUF929: Domain of unk 20.9 1.1E+02 0.0023 25.6 3.0 30 245-274 55-85 (249)
485 COG3531 Predicted protein-disu 20.9 1.7E+02 0.0036 23.5 3.9 43 164-211 164-209 (212)
486 KOG0833|consensus 20.8 70 0.0015 24.9 1.8 17 256-272 101-117 (173)
487 PF00255 GSHPx: Glutathione pe 20.6 1.3E+02 0.0027 21.5 3.0 29 248-277 21-49 (108)
488 PF11287 DUF3088: Protein of u 20.3 1.5E+02 0.0033 21.3 3.2 53 131-187 24-77 (112)
489 PRK12411 cytidine deaminase; P 20.2 58 0.0013 24.1 1.2 13 258-270 84-96 (132)
No 1
>KOG0190|consensus
Probab=100.00 E-value=1.1e-35 Score=259.71 Aligned_cols=241 Identities=36% Similarity=0.632 Sum_probs=197.2
Q ss_pred HHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCC-C-CcccCCCCCCHHHHHHHHHHHhcCCCCc
Q psy9102 11 NRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED-G-KKYAMKDEFSVENLESFLTKVVAGEVDP 88 (277)
Q Consensus 11 ~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~-~-~~y~~~g~~~~~~i~~fi~~~~~~~~~~ 88 (277)
..|..+|..+++++.|++++..+. .+.+++.... ..|++++.+.+ + ..| +|+++.+.|.+||..+..|.+..
T Consensus 168 ~~~~~~a~~l~~d~~F~~ts~~~~---~~~~~~~~~~-~~~i~l~kk~d~~~~~~--~~~~~~~~l~~Fi~~~~~plv~~ 241 (493)
T KOG0190|consen 168 ESFFDAASKLRDDYKFAHTSDSDV---AKKLELNTEG-TFPIVLFKKFDELLVKY--DGSFTPELLKKFIQENSLPLVTE 241 (493)
T ss_pred HHHHHHHHhccccceeeccCcHhH---HhhccCCCCC-cceEEeccccccchhhc--ccccCHHHHHHHHHHhcccccce
Confidence 678889999999999999999998 8888887521 12466777644 4 667 99999999999999999999998
Q ss_pred cccCCCCCCCCCCCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhh
Q psy9102 89 YIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELN 168 (277)
Q Consensus 89 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~ 168 (277)
++..+...++.. .+ ...+.+|-..-|..-... .+.+.++|++|++++.|+.+|.+..++.+.
T Consensus 242 ------ft~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~e~~-~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~ 303 (493)
T KOG0190|consen 242 ------FTVANNAKIYSS-------FV----KLGLDFFVFFKCNRFEEL-RKKFEEVAKKFKGKLRFILIDPESFARVLE 303 (493)
T ss_pred ------ecccccceeecc-------cc----ccceeEEeccccccHHHH-HHHHHHHHHhcccceEEEEEChHHhhHHHH
Confidence 776655555222 11 223333333334443444 689999999999999999999999999999
Q ss_pred ccCcccCCCCCC-eEEEEcCCCceeeecC-CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC-CCeEecchhcHHHHhh
Q psy9102 169 EFGFDYVPSDKP-LVFVRAEDGKKYAMKD-EFSVENLESFLTKVVAGEVDPYIKSEPVPEDNS-GPVKVAVAKNFDEVVT 245 (277)
Q Consensus 169 ~~~i~~~~~~~P-~i~~~~~~~~~~~~~g-~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~-~~v~~l~~~~f~~~v~ 245 (277)
.||+.. .+.| .+++.+..+.+|...+ ..+.+.|..|+.++++|+++|+++|+|+|++++ .+|+.++++||++.+.
T Consensus 304 ~~Gl~~--~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~ 381 (493)
T KOG0190|consen 304 FFGLEE--EQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVL 381 (493)
T ss_pred hcCccc--ccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhh
Confidence 999996 5566 4466666667887765 488889999999999999999999999999877 7899999999999999
Q ss_pred cCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 246 NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 246 ~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.++++||.|||||||||+++.|+|++||+.|
T Consensus 382 de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 382 DEGKDVLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred ccccceEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 99999999999999999999999999999875
No 2
>KOG0190|consensus
Probab=99.98 E-value=1.6e-31 Score=233.82 Aligned_cols=199 Identities=34% Similarity=0.607 Sum_probs=176.4
Q ss_pred hhhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCc-EEEEEcCCCCcccCCCC-CCHHHHHHHHHHHh
Q psy9102 5 GTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKP-LVFVRAEDGKKYAMKDE-FSVENLESFLTKVV 82 (277)
Q Consensus 5 ~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P-~~~~~~~~~~~y~~~g~-~~~~~i~~fi~~~~ 82 (277)
+.++|.+.|.++|++|++++.|+.+|....++.++.||+... ..| .+++.++.+.+|.++++ .+.++|..|+.+++
T Consensus 269 ~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl~~~--~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l 346 (493)
T KOG0190|consen 269 RFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGLEEE--QLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFL 346 (493)
T ss_pred cHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCcccc--cCCeeEEeeccccccccCccccccHHHHHHHHHHHh
Confidence 679999999999999999999999999999899999999975 445 44444444588887766 78889999999999
Q ss_pred cCCCCccccCCCCCCCCC-CCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc--ceEEEec
Q psy9102 83 AGEVDPYIKSEPVPEDNS-GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK--FTFAISA 159 (277)
Q Consensus 83 ~~~~~~~~~s~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~--i~~~~vd 159 (277)
.+++.++++|||+|+++. ++++.++++||++++++.++.+||.||||||+||+++ .|.|++||+.|++. +.++.+|
T Consensus 347 ~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~l-aP~~eeLAe~~~~~~~vviAKmD 425 (493)
T KOG0190|consen 347 DGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKAL-APIYEELAEKYKDDENVVIAKMD 425 (493)
T ss_pred cCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhh-hhHHHHHHHHhcCCCCcEEEEec
Confidence 999999999999999998 7899999999999999999999999999999999999 79999999999986 9999999
Q ss_pred ccccchhhhccCcccCCCCCCeEEEEcCCCc--eeeecCCCCHHHHHHHHHHHhc
Q psy9102 160 KDDFQHELNEFGFDYVPSDKPLVFVRAEDGK--KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~--~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
++.|.. ...++.+ +|||++++++++ +..|.|+++.+++..|+...-.
T Consensus 426 aTaNd~--~~~~~~~----fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 426 ATANDV--PSLKVDG----FPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cccccC--ccccccc----cceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 987654 5566777 999999998763 6778999999999999987643
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=99.97 E-value=8.8e-30 Score=231.49 Aligned_cols=257 Identities=28% Similarity=0.461 Sum_probs=195.9
Q ss_pred hhHHHHHHHHHHHhcC---CceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC-CcccCCCCCCHHHHHHHHHHH
Q psy9102 6 TNYWRNRILKVAKGFA---DKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKDEFSVENLESFLTKV 81 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~---~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~-~~y~~~g~~~~~~i~~fi~~~ 81 (277)
++.+.+.|.++|..++ .++.|+.+||.+...+|+.+||.+ +|++++.++.+ ..| .|..+.++|.+|+...
T Consensus 64 Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~----~Pt~~~~~~g~~~~y--~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 64 CKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG----YPTIKFFNKGNPVNY--SGGRTADGIVSWIKKL 137 (477)
T ss_pred HHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc----ccEEEEEECCceEEe--cCCCCHHHHHHHHHHh
Confidence 4667888889887764 469999999999999999999996 56554443334 667 9999999999999999
Q ss_pred hcCCCCccccCCC---------------CC---------------------------CCC--------------------
Q psy9102 82 VAGEVDPYIKSEP---------------VP---------------------------EDN-------------------- 99 (277)
Q Consensus 82 ~~~~~~~~~~s~~---------------~~---------------------------~~~-------------------- 99 (277)
..+.+......++ +. ...
T Consensus 138 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (477)
T PTZ00102 138 TGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEEGVELFMGK 217 (477)
T ss_pred hCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEEEEcCCCCCcEEEEecCCCCcccCCCC
Confidence 8776543111000 00 000
Q ss_pred -------------CCCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccch-
Q psy9102 100 -------------SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH- 165 (277)
Q Consensus 100 -------------~~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~- 165 (277)
...+..++..++.... .++.++++.++ .+.....+ .+.+.++|++|++++.|+.+|+++.+.
T Consensus 218 ~~~~l~~fI~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~~~A~~~~~~~~f~~vd~~~~~~~ 293 (477)
T PTZ00102 218 TKEELEEFVSTESFPLFAEINAENYRRYI-SSGKDLVWFCG--TTEDYDKY-KSVVRKVARKLREKYAFVWLDTEQFGSH 293 (477)
T ss_pred CHHHHHHHHHHcCCCceeecCccchHHHh-cCCccEEEEec--CHHHHHHH-HHHHHHHHHhccCceEEEEEechhcchh
Confidence 0111233333333322 33344433332 34444555 689999999999999999999998886
Q ss_pred hhhccCcccCCCCCCeEEEEcCCCceeeecCC----CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhcHH
Q psy9102 166 ELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDE----FSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFD 241 (277)
Q Consensus 166 ~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~----~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~f~ 241 (277)
+++.+|+.. +|++++....+ +|.+.+. ++.+.|.+|++++++|++.+.++|+|+|+.+++++..+++++|+
T Consensus 294 ~~~~~gi~~----~P~~~i~~~~~-~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~ 368 (477)
T PTZ00102 294 AKEHLLIEE----FPGLAYQSPAG-RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFE 368 (477)
T ss_pred HHHhcCccc----CceEEEEcCCc-ccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchH
Confidence 788999987 99998877555 4545443 78999999999999999999999999998888899999999999
Q ss_pred HHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 242 EVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 242 ~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.+.+.+++++|.||||||++|+++.|.|+++|+.+
T Consensus 369 ~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~ 404 (477)
T PTZ00102 369 EIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKY 404 (477)
T ss_pred HHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 999888999999999999999999999999998753
No 4
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.96 E-value=4.9e-28 Score=219.16 Aligned_cols=240 Identities=40% Similarity=0.689 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHhcCCceE-EEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCC-C-C--cccCCCCC--CHHHHHHHHH
Q psy9102 7 NYWRNRILKVAKGFADKFT-FAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED-G-K--KYAMKDEF--SVENLESFLT 79 (277)
Q Consensus 7 ~~~~~~f~~~A~~~~~~~~-f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~-~-~--~y~~~g~~--~~~~i~~fi~ 79 (277)
......|.++|..+++.+. |+.+..... .+.+++.. .+++++++.. + . .| .|+. +.++|.+||.
T Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~fi~ 212 (462)
T TIGR01130 142 SELNDTFLSVAEKLRDVYFFFAHSSDVAA---FAKLGAFP----DSVVLFKPKDEDEKFSKV--DGEMDTDVSDLEKFIR 212 (462)
T ss_pred cHHHHHHHHHHHHhhhccceEEecCCHHH---HhhcCCCC----CcEEEecccccccccccc--cCcccCCHHHHHHHHH
Confidence 4667789999999988877 444444444 77788774 3366776533 2 3 45 6664 6689999999
Q ss_pred HHhcCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCccEEEEEe--cCCChhhhhhhHHHHHHHHhhcCC-cceEE
Q psy9102 80 KVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFY--APWCGHCTNYWRNRILKVAKGFAD-KFTFA 156 (277)
Q Consensus 80 ~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~F~--~~~c~~c~~~~~~~~~~la~~~~~-~i~~~ 156 (277)
.+..|.+.. ++. .++...+... +.++.|+ ......|+.+ .+.+.++|++|++ .+.|+
T Consensus 213 ~~~~p~v~~------~~~-----------~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~i~f~ 272 (462)
T TIGR01130 213 AESLPLVGE------FTQ-----------ETAAKYFESG--PLVVLYYNVDESLDPFEEL-RNRFLEAAKKFRGKFVNFA 272 (462)
T ss_pred HcCCCceEe------eCC-----------cchhhHhCCC--CceeEEEEecCCchHHHHH-HHHHHHHHHHCCCCeEEEE
Confidence 999886666 433 3343333222 4444444 3344556777 5899999999997 89999
Q ss_pred EecccccchhhhccCcccCCCCCCeEEEEcCCC-ceeeecC-CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEe
Q psy9102 157 ISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKD-EFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKV 234 (277)
Q Consensus 157 ~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~-~~~~~~g-~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~ 234 (277)
.+|+.+...++..+|+.. ..+|++++++..+ .+|.+.+ .++.+.|.+|++++++|++++.++|+++|+...+.+..
T Consensus 273 ~~d~~~~~~~~~~~~~~~--~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~ 350 (462)
T TIGR01130 273 VADEEDFGRELEYFGLKA--EKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKV 350 (462)
T ss_pred EecHHHhHHHHHHcCCCc--cCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEE
Confidence 999999999999999985 4599999888776 5677765 79999999999999999999999999999887788999
Q ss_pred cchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 235 AVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 235 l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+++++|.+.+.+.+++++|.||||||++|+++.|.|+++|+.+
T Consensus 351 l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~ 393 (462)
T TIGR01130 351 LVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKY 393 (462)
T ss_pred eeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHh
Confidence 9999999999888999999999999999999999999999864
No 5
>PTZ00102 disulphide isomerase; Provisional
Probab=99.95 E-value=4e-27 Score=214.07 Aligned_cols=199 Identities=30% Similarity=0.551 Sum_probs=176.4
Q ss_pred chhhHHHHHHHHHHHhcCCceEEEEEcccchHH-HhhhcCCCCCCCCCcEEEEEcCCCCcccCCCC----CCHHHHHHHH
Q psy9102 4 TGTNYWRNRILKVAKGFADKFTFAISAKDDFQH-ELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDE----FSVENLESFL 78 (277)
Q Consensus 4 ~~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~-~~~~~~v~~~~~~~P~~~~~~~~~~~y~~~g~----~~~~~i~~fi 78 (277)
++.+++.+.|+++|+++++++.|+.+|..++.. +++.+|+. ..|++++....+ +|.+.+. ++.++|.+|+
T Consensus 260 ~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~----~~P~~~i~~~~~-~y~~~~~~~~~~~~~~l~~Fv 334 (477)
T PTZ00102 260 EDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIE----EFPGLAYQSPAG-RYLLPPAKESFDSVEALIEFF 334 (477)
T ss_pred HHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcc----cCceEEEEcCCc-ccCCCccccccCCHHHHHHHH
Confidence 345678999999999999999999999999876 88999999 468777775444 4434443 6899999999
Q ss_pred HHHhcCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC--cceEE
Q psy9102 79 TKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD--KFTFA 156 (277)
Q Consensus 79 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~--~i~~~ 156 (277)
.+...+++.++++|+|+|+.....+..+++.+|++.+.+.+++++|.||++||++|+.+ .+.|.++++.+++ .+.++
T Consensus 335 ~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~-~p~~~~~a~~~~~~~~v~~~ 413 (477)
T PTZ00102 335 KDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNL-EPVYNELGEKYKDNDSIIVA 413 (477)
T ss_pred HHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHH-HHHHHHHHHHhccCCcEEEE
Confidence 99999999999999999998888999999999999988999999999999999999999 6999999999875 48999
Q ss_pred EecccccchhhhccCcccCCCCCCeEEEEcCCCce-eeecCCCCHHHHHHHHHHHhc
Q psy9102 157 ISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKK-YAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 157 ~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~-~~~~g~~~~~~l~~fi~~~~~ 212 (277)
.+|++.+...++.+++++ +||+++++++++. ..+.|.++.+.|.+||+++..
T Consensus 414 ~id~~~~~~~~~~~~v~~----~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 414 KMNGTANETPLEEFSWSA----FPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred EEECCCCccchhcCCCcc----cCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 999999999999999998 9999999877653 578999999999999999875
No 6
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.95 E-value=3.7e-26 Score=206.86 Aligned_cols=200 Identities=39% Similarity=0.662 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHhcCC-ceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC-CcccCCC-CCCHHHHHHHHHHHhc
Q psy9102 7 NYWRNRILKVAKGFAD-KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKD-EFSVENLESFLTKVVA 83 (277)
Q Consensus 7 ~~~~~~f~~~A~~~~~-~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~-~~y~~~g-~~~~~~i~~fi~~~~~ 83 (277)
+.+.+.|+++|.++++ .+.|+.+|+....+++..+|+... ..|.+++.+..+ .+|.+.+ .++.++|.+|+.+.+.
T Consensus 251 ~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~--~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~ 328 (462)
T TIGR01130 251 EELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAE--KFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLD 328 (462)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCcc--CCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhc
Confidence 7899999999999997 999999999999999999999964 578777776555 6676666 7899999999999999
Q ss_pred CCCCccccCCCCCCCCCCCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC---cceEEEecc
Q psy9102 84 GEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD---KFTFAISAK 160 (277)
Q Consensus 84 ~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~---~i~~~~vd~ 160 (277)
+.+.+..+|+++|+.....+..+++.+|.+.+.+.+++++|.||++||++|+.+ .+.+.++++.+++ .+.|+.+|+
T Consensus 329 g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~i~~~~id~ 407 (462)
T TIGR01130 329 GKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNL-APIYEELAEKYKDAESDVVIAKMDA 407 (462)
T ss_pred CCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHH-HHHHHHHHHHhhcCCCcEEEEEEEC
Confidence 999999999999988788899999999999999999999999999999999999 6999999999998 699999999
Q ss_pred cccchhhhccCcccCCCCCCeEEEEcCCCc--eeeecCCCCHHHHHHHHHHHhcCCC
Q psy9102 161 DDFQHELNEFGFDYVPSDKPLVFVRAEDGK--KYAMKDEFSVENLESFLTKVVAGEV 215 (277)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~--~~~~~g~~~~~~l~~fi~~~~~~~~ 215 (277)
+.+.. .. +++.+ +|++++++++++ ...+.|..+.+.|.+||.+....++
T Consensus 408 ~~n~~-~~-~~i~~----~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 408 TANDV-PP-FEVEG----FPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred CCCcc-CC-CCccc----cCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 87643 33 89988 999999987664 3678899999999999998876443
No 7
>KOG0191|consensus
Probab=99.94 E-value=1.1e-25 Score=198.46 Aligned_cols=245 Identities=25% Similarity=0.406 Sum_probs=194.6
Q ss_pred hhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEE-cCCC-CcccCCCCCCHHHHHHHHHHHhc
Q psy9102 6 TNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVR-AEDG-KKYAMKDEFSVENLESFLTKVVA 83 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~-~~~~-~~y~~~g~~~~~~i~~fi~~~~~ 83 (277)
+..+..+|.++|..+++.+.++.+||..+..+|+.|+|.++ |++.+. ++.. ..| .|..+.+.+..|+...+.
T Consensus 62 c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gf----Ptl~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 62 CKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGF----PTLKVFRPGKKPIDY--SGPRNAESLAEFLIKELE 135 (383)
T ss_pred hhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccC----cEEEEEcCCCceeec--cCcccHHHHHHHHHHhhc
Confidence 57889999999999999999999999999999999999974 655555 4412 667 899999999999999998
Q ss_pred CCCCccccCCCCCCCCCCCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcC--CcceEEEeccc
Q psy9102 84 GEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA--DKFTFAISAKD 161 (277)
Q Consensus 84 ~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~--~~i~~~~vd~~ 161 (277)
+.+.. .... .+..+...+|...+.+.+..++|.||+|||++|+.+ .+.+.+++..++ ..+.++.+|++
T Consensus 136 ~~~~~------~~~~---~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l-~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 136 PSVKK------LVEG---EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKL-APEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred ccccc------ccCC---ceEEccccchhhhhhccCcceEEEEeccccHHhhhc-ChHHHHHHHHhccCcceEEEeeccc
Confidence 87766 3221 589999999999999999999999999999999999 699999999986 45999999999
Q ss_pred ccchhhhccCcccCCCCCCeEEEEcCCCc-eeeecCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC---CeEecch
Q psy9102 162 DFQHELNEFGFDYVPSDKPLVFVRAEDGK-KYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSG---PVKVAVA 237 (277)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~---~v~~l~~ 237 (277)
....++..+++.. +|++.+++.+.+ .+.+.|.++.+.|..|+++....... ..++.+.... ....++.
T Consensus 206 ~~~~~~~~~~v~~----~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~ 277 (383)
T KOG0191|consen 206 VHKSLASRLEVRG----YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIP----EPELKEIEDKDTFSPTFLDT 277 (383)
T ss_pred hHHHHhhhhcccC----CceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCC----CcccccccCccccccchhhh
Confidence 8889999999998 999999998877 66778899999999999988764311 1111111111 0111111
Q ss_pred hcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 238 ~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
+.|... ......++|.|+++||++|..+.|.++..+.
T Consensus 278 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (383)
T KOG0191|consen 278 AEFLDS-LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAE 314 (383)
T ss_pred hhhhhh-hHHhhhhHhhhhcchhhcccccchhHHHHHh
Confidence 222111 1223579999999999999999999998875
No 8
>KOG0191|consensus
Probab=99.92 E-value=5.1e-24 Score=187.87 Aligned_cols=158 Identities=33% Similarity=0.579 Sum_probs=138.4
Q ss_pred EEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEE
Q psy9102 104 KVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVF 183 (277)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~ 183 (277)
..++..+|...+...+++++|.||+|||++|+.+ .+.+.++++.+++.+.++.|||+.+..+|..|+|.+ +||+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l-~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~g----fPtl~ 106 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKL-APTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQG----FPTLK 106 (383)
T ss_pred hhhhccccHHHhhccCCceEEEEECCCCcchhhh-chHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCcc----CcEEE
Confidence 3344666777777888999999999999999999 599999999999999999999999999999999998 99998
Q ss_pred EEcCCCceeeecCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-CeEecchhcHHHHhhcCCCcEEEEEECCCCHH
Q psy9102 184 VRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSG-PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGH 262 (277)
Q Consensus 184 ~~~~~~~~~~~~g~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~-~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~ 262 (277)
++.++.....+.|..+.+.+..|+...++..... ... .+..+...+|...+.+.+.+++|.||+|||+|
T Consensus 107 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ 176 (383)
T KOG0191|consen 107 VFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKK----------LVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGH 176 (383)
T ss_pred EEcCCCceeeccCcccHHHHHHHHHHhhcccccc----------ccCCceEEccccchhhhhhccCcceEEEEeccccHH
Confidence 8887756788889999999999999887633221 112 48889999999999999999999999999999
Q ss_pred HhhhhHHHHHHHhh
Q psy9102 263 CKKLTPVYEEVGEK 276 (277)
Q Consensus 263 c~~~~p~~~~la~~ 276 (277)
|+.+.|.|++++..
T Consensus 177 ck~l~~~~~~~a~~ 190 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKL 190 (383)
T ss_pred hhhcChHHHHHHHH
Confidence 99999999999974
No 9
>KOG0910|consensus
Probab=99.85 E-value=1.5e-21 Score=144.18 Aligned_cols=107 Identities=24% Similarity=0.413 Sum_probs=99.5
Q ss_pred CCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCC
Q psy9102 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKP 180 (277)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P 180 (277)
..+...+...|++.+.+++.||+|.|||+||++|+.+ .|.+++++.+|.|++.|+.||.+++.+++..|+|+. +|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l-~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~a----vP 117 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKML-GPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISA----VP 117 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHh-hHHHHHHHHhhcCeEEEEEEccccccchHhhcceee----ee
Confidence 4566778889999999999999999999999999999 699999999999999999999999999999999998 99
Q ss_pred eEEEEcCCCceeeecCCCCHHHHHHHHHHHhc
Q psy9102 181 LVFVRAEDGKKYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 181 ~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
|+++++++.++.++.|..+.+.|.++|++++.
T Consensus 118 tvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999977667789999999999999999874
No 10
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.84 E-value=5.1e-20 Score=149.85 Aligned_cols=135 Identities=12% Similarity=0.133 Sum_probs=103.6
Q ss_pred cEEEEEec---CCChhhhhhhHHHHHHHHhhcCC-cceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCce-eeec
Q psy9102 121 DVLVEFYA---PWCGHCTNYWRNRILKVAKGFAD-KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKK-YAMK 195 (277)
Q Consensus 121 ~~~v~F~~---~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~-~~~~ 195 (277)
..++.|++ +||++|+.+ .+.+.+++.++.+ ++.++.+|.++++.+++.|+|.+ +||+++++++... .++.
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~-~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~----~Pt~~~f~~g~~~~~~~~ 95 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKET-EQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVER----VPTTIILEEGKDGGIRYT 95 (215)
T ss_pred eEEEEEcCCCCCCCCchHHH-HHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCc----cCEEEEEeCCeeeEEEEe
Confidence 34556777 999999999 6999999999964 25677777778999999999998 9999999866554 4788
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhcHHHHhhcCCCcEE-EEEECCCCHHHhhhhHHHHHHH
Q psy9102 196 DEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVL-VEFYAPWCGHCKKLTPVYEEVG 274 (277)
Q Consensus 196 g~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~f~~~v~~~~~~~l-V~f~apwC~~c~~~~p~~~~la 274 (277)
|..+.+++..||+.+++-. +....++.++.+.+- +.++++. +.||+|||++|+++.|.+++++
T Consensus 96 G~~~~~~l~~~i~~~~~~~---------------~~~~~L~~~~~~~l~-~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~ 159 (215)
T TIGR02187 96 GIPAGYEFAALIEDIVRVS---------------QGEPGLSEKTVELLQ-SLDEPVRIEVFVTPTCPYCPYAVLMAHKFA 159 (215)
T ss_pred ecCCHHHHHHHHHHHHHhc---------------CCCCCCCHHHHHHHH-hcCCCcEEEEEECCCCCCcHHHHHHHHHHH
Confidence 9899999999999886411 011234445554443 3445544 4599999999999999999988
Q ss_pred hh
Q psy9102 275 EK 276 (277)
Q Consensus 275 ~~ 276 (277)
..
T Consensus 160 ~~ 161 (215)
T TIGR02187 160 LA 161 (215)
T ss_pred Hh
Confidence 64
No 11
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.83 E-value=2e-20 Score=135.66 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=91.7
Q ss_pred CCeEEeecccceee--eecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhh-hccCcccCCC
Q psy9102 101 GPVKVAVAKNFDEV--VTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL-NEFGFDYVPS 177 (277)
Q Consensus 101 ~~i~~~~~~~~~~~--~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~-~~~~i~~~~~ 177 (277)
+.|..++..||+.. +.+.+++++|.|||+||++|+.+ .+.+.++|+++++.+.|+.|||+++..++ ++|+|.+
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l-~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~--- 84 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAA-RQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFY--- 84 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHH-HHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcc---
Confidence 56889999999986 35778999999999999999999 69999999999988999999999999999 5899998
Q ss_pred CCCeEEEEcCCCceeeecCCCCHHHHHHHH
Q psy9102 178 DKPLVFVRAEDGKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 178 ~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi 207 (277)
+||+.+++++.....|.|.++.+.|..|+
T Consensus 85 -~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 -FPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred -cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 99998888666678899999999998873
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.82 E-value=2.7e-20 Score=134.18 Aligned_cols=101 Identities=21% Similarity=0.410 Sum_probs=91.5
Q ss_pred CeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCe
Q psy9102 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPL 181 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~ 181 (277)
.+..++.++|++.+.+++++++|.||++||++|+.+ .+.|.++++++.+.+.|+.||+++++.+++.++|.+ +||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~----~Pt 76 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQAL-LPELRKAARALKGKVKVGSVDCQKYESLCQQANIRA----YPT 76 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHH-HHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCc----ccE
Confidence 356788899999988888899999999999999999 699999999998889999999999999999999998 999
Q ss_pred EEEEcCC-CceeeecCCCC-HHHHHHHH
Q psy9102 182 VFVRAED-GKKYAMKDEFS-VENLESFL 207 (277)
Q Consensus 182 i~~~~~~-~~~~~~~g~~~-~~~l~~fi 207 (277)
+++++++ .....+.|..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 9999877 56788999887 99999885
No 13
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.82 E-value=9.5e-19 Score=139.12 Aligned_cols=177 Identities=22% Similarity=0.384 Sum_probs=140.5
Q ss_pred cchhhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC--CcccCCCC-CCHHHHHHHHH
Q psy9102 3 KTGTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG--KKYAMKDE-FSVENLESFLT 79 (277)
Q Consensus 3 ~~~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~--~~y~~~g~-~~~~~i~~fi~ 79 (277)
.+......+.|.++|+.+++++.|+++...+. ++.+|++. |. +++|++.++ ..| .|+ ++.++|.+||.
T Consensus 2 ~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~---~~~~~~~~---p~-i~~~k~~~~~~~~y--~~~~~~~~~l~~fI~ 72 (184)
T PF13848_consen 2 PDKDSELFEIFEEAAEKLKGDYQFGVTFNEEL---AKKYGIKE---PT-IVVYKKFDEKPVVY--DGDKFTPEELKKFIK 72 (184)
T ss_dssp STTTSHHHHHHHHHHHHHTTTSEEEEEE-HHH---HHHCTCSS---SE-EEEEECTTTSEEEE--SSSTTSHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHhCcCCcEEEEEcHHHH---HHHhCCCC---Cc-EEEeccCCCCceec--ccccCCHHHHHHHHH
Confidence 44567888999999999999999999998887 99999995 44 777886444 667 887 89999999999
Q ss_pred HHhcCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCcc-EEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEe
Q psy9102 80 KVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKD-VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAIS 158 (277)
Q Consensus 80 ~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~v 158 (277)
.+..|.+.+ ++..++..+. +.+.+ +++.|..........+ ...+.++|+++++++.|+++
T Consensus 73 ~~~~P~v~~-----------------~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~a~~~~~~~~f~~~ 133 (184)
T PF13848_consen 73 KNSFPLVPE-----------------LTPENFEKLF-SSPKPPVLILFDNKDNESTEAF-KKELQDIAKKFKGKINFVYV 133 (184)
T ss_dssp HHSSTSCEE-----------------ESTTHHHHHH-STSSEEEEEEEETTTHHHHHHH-HHHHHHHHHCTTTTSEEEEE
T ss_pred Hhccccccc-----------------cchhhHHHHh-cCCCceEEEEEEcCCchhHHHH-HHHHHHHHHhcCCeEEEEEe
Confidence 999997666 4444555544 44445 7777776666666666 68899999999999999999
Q ss_pred cccccchhhhccCcccCCCCCCeEEEEcCCCcee--eecCCCCHHHHHHHHHH
Q psy9102 159 AKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKY--AMKDEFSVENLESFLTK 209 (277)
Q Consensus 159 d~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~--~~~g~~~~~~l~~fi~~ 209 (277)
|++..+++++.+|++. .++|++++++.....+ ...|.++.+.|.+|+++
T Consensus 134 d~~~~~~~~~~~~i~~--~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 134 DADDFPRLLKYFGIDE--DDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp ETTTTHHHHHHTTTTT--SSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred ehHHhHHHHHHcCCCC--ccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9998899999999985 5699998888443333 34789999999999975
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.81 E-value=1.2e-19 Score=130.36 Aligned_cols=103 Identities=26% Similarity=0.499 Sum_probs=95.4
Q ss_pred eEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeE
Q psy9102 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLV 182 (277)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i 182 (277)
|..++.++|++.+.+++++++|+||++||++|+.+ .+.|.++++.+.+.+.|+.||++++..+++.|+|.+ +|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~-~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~----~Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAF-KPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKS----VPTI 75 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHH-HHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSS----SSEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccc-cceecccccccccccccchhhhhccchhhhccCCCC----CCEE
Confidence 35788999999998878999999999999999999 699999999999889999999999999999999998 9999
Q ss_pred EEEcCCCceeeecCCCCHHHHHHHHHHH
Q psy9102 183 FVRAEDGKKYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 183 ~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 210 (277)
+++.++....++.|..+.+.|.+||+++
T Consensus 76 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 76 IFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999777777999999999999999874
No 15
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.81 E-value=8.9e-20 Score=130.76 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=89.0
Q ss_pred CeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCe
Q psy9102 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPL 181 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~ 181 (277)
.+..++..+|+..+. .+++++|.||++||++|+.+ .+.|.++++++++.+.|+.|||++++.+++.++|+. +||
T Consensus 2 ~~~~l~~~~f~~~v~-~~~~~~v~f~a~wC~~C~~~-~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~----~Pt 75 (101)
T cd03003 2 EIVTLDRGDFDAAVN-SGEIWFVNFYSPRCSHCHDL-APTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNS----YPS 75 (101)
T ss_pred CeEEcCHhhHHHHhc-CCCeEEEEEECCCChHHHHh-HHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCc----cCE
Confidence 356788899998874 45899999999999999999 699999999999889999999999999999999998 999
Q ss_pred EEEEcCCCceeeecCCCCHHHHHHH
Q psy9102 182 VFVRAEDGKKYAMKDEFSVENLESF 206 (277)
Q Consensus 182 i~~~~~~~~~~~~~g~~~~~~l~~f 206 (277)
+++++.+.....+.|.++.+.|.+|
T Consensus 76 ~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHhh
Confidence 9999866667788999999999887
No 16
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.79 E-value=5.7e-19 Score=128.92 Aligned_cols=106 Identities=16% Similarity=0.241 Sum_probs=94.8
Q ss_pred CCCeEEeecccceeeeecCCccEEEEEecCCChh--hh--hhhHHHHHHHHhhc--CCcceEEEecccccchhhhccCcc
Q psy9102 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGH--CT--NYWRNRILKVAKGF--ADKFTFAISAKDDFQHELNEFGFD 173 (277)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~--c~--~~~~~~~~~la~~~--~~~i~~~~vd~~~~~~~~~~~~i~ 173 (277)
...+..++..||++.+.+++.++++.|++.||++ |+ .+ .|.+.++|.++ .+.+.|+.||+++++.++++|||.
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~-~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQM-EELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcc-hhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence 3568889999999999999999999999999987 99 55 78999999998 778999999999999999999999
Q ss_pred cCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHHHHh
Q psy9102 174 YVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211 (277)
Q Consensus 174 ~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~ 211 (277)
+ +||+++|+++ +...+.|.++.+.|.+||++++
T Consensus 87 ~----iPTl~lfk~G-~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 E----EDSIYVFKDD-EVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred c----ccEEEEEECC-EEEEeeCCCCHHHHHHHHHHHh
Confidence 9 9999998855 4556999999999999999875
No 17
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=5.1e-19 Score=128.59 Aligned_cols=100 Identities=32% Similarity=0.475 Sum_probs=90.7
Q ss_pred eEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccc--cchhhhccCcccCCCCCC
Q psy9102 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDD--FQHELNEFGFDYVPSDKP 180 (277)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~~~~~P 180 (277)
+..++.++|+..+.+.+++++|.||++||++|+.+ .+.+.++++.+.+.+.++.+|++. +..+++.|+|.+ +|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~-~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~----~P 76 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNL-KPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG----FP 76 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhh-ChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc----CC
Confidence 56788999999998888999999999999999999 699999999999889999999998 788999999998 99
Q ss_pred eEEEEcCCC-----ceeeecCCCCHHHHHHHH
Q psy9102 181 LVFVRAEDG-----KKYAMKDEFSVENLESFL 207 (277)
Q Consensus 181 ~i~~~~~~~-----~~~~~~g~~~~~~l~~fi 207 (277)
+++++++++ ....|.|.++.++|.+||
T Consensus 77 t~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 77 TLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 999988775 356788999999999997
No 18
>PRK09381 trxA thioredoxin; Provisional
Probab=99.77 E-value=2.2e-18 Score=125.32 Aligned_cols=106 Identities=21% Similarity=0.357 Sum_probs=95.2
Q ss_pred CCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCC
Q psy9102 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKP 180 (277)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P 180 (277)
+.+..+++++|.+.+.+.+++++|+||++||++|+.+ .+.+.++++++.+.+.++.+|++..+.+++.|++.. +|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~-~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~----~P 77 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMI-APILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG----IP 77 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHH-hHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCc----CC
Confidence 4567788899998887888999999999999999999 699999999999889999999999999999999998 99
Q ss_pred eEEEEcCCCceeeecCCCCHHHHHHHHHHHh
Q psy9102 181 LVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211 (277)
Q Consensus 181 ~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~ 211 (277)
++++++.+.....+.|..+.+.|..||...+
T Consensus 78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 78 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9999986655678889999999999998765
No 19
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.76 E-value=1.5e-18 Score=125.89 Aligned_cols=100 Identities=20% Similarity=0.308 Sum_probs=86.5
Q ss_pred CeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcC------CcceEEEecccccchhhhccCcccC
Q psy9102 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA------DKFTFAISAKDDFQHELNEFGFDYV 175 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~------~~i~~~~vd~~~~~~~~~~~~i~~~ 175 (277)
.+..+++++|++.+ ..+++++|.||++||++|+++ .+.+.++++.++ +.+.++.|||+.++.+++.|||++
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~-~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~- 78 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQML-HPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK- 78 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhh-HHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc-
Confidence 46678899999866 666899999999999999999 699999998764 248999999999999999999998
Q ss_pred CCCCCeEEEEcCCC-ceeeecCCCCHHHHHHHH
Q psy9102 176 PSDKPLVFVRAEDG-KKYAMKDEFSVENLESFL 207 (277)
Q Consensus 176 ~~~~P~i~~~~~~~-~~~~~~g~~~~~~l~~fi 207 (277)
+||+++++++. ....+.|..+.++|.+||
T Consensus 79 ---~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 ---YPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred ---CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999888655 247788999999999885
No 20
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.76 E-value=3.5e-18 Score=122.84 Aligned_cols=100 Identities=28% Similarity=0.404 Sum_probs=90.4
Q ss_pred eEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeE
Q psy9102 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLV 182 (277)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i 182 (277)
+..+++.+|.+.+.+.+++++|+||++||++|+.+ .+.|.++++++.+.+.++.+|++.++.+++.|+|.+ +|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~-~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~----~P~~ 76 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNL-APEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRG----FPTI 76 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHH-hHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCc----cCEE
Confidence 56778889998887777889999999999999999 699999999999889999999999999999999998 9999
Q ss_pred EEEcCC-CceeeecCCCCHHHHHHHH
Q psy9102 183 FVRAED-GKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 183 ~~~~~~-~~~~~~~g~~~~~~l~~fi 207 (277)
++++.+ .....+.|..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 988866 4567889999999999997
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.75 E-value=2.6e-18 Score=125.11 Aligned_cols=101 Identities=12% Similarity=0.226 Sum_probs=85.7
Q ss_pred EEeecccceeeee--cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC-cceEEEecccccchhhhccCcccCCCCCC
Q psy9102 104 KVAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD-KFTFAISAKDDFQHELNEFGFDYVPSDKP 180 (277)
Q Consensus 104 ~~~~~~~~~~~~~--~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~~~~~P 180 (277)
+.++..+|.+.+. +.+++++|.||++||++|+.+ .+.+.++++++++ .+.++.||++.++.+++.+||.+ +|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~-~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~----~P 81 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHI-EPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHS----VP 81 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHh-hHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCcc----CC
Confidence 3456667766554 356899999999999999999 6999999999986 49999999999999999999998 99
Q ss_pred eEEEEcCCCceeeecCCCCHHHHHHHHHH
Q psy9102 181 LVFVRAEDGKKYAMKDEFSVENLESFLTK 209 (277)
Q Consensus 181 ~i~~~~~~~~~~~~~g~~~~~~l~~fi~~ 209 (277)
|+++++.+.......|..+.+.|.+||++
T Consensus 82 t~~i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 82 AIVGIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence 99988855445566899999999999975
No 22
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.75 E-value=7.2e-18 Score=136.35 Aligned_cols=107 Identities=21% Similarity=0.373 Sum_probs=94.3
Q ss_pred CCCeEEeecccceeeeecC----CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccC
Q psy9102 100 SGPVKVAVAKNFDEVVTNN----EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYV 175 (277)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~----~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~ 175 (277)
.+.+..++..+|++++..+ +++++|.||++||++|+.+ .+.|.++++++++.+.++.+|+++++.+++.|+|++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~-~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~- 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKM-APAWERLAKALKGQVNVADLDATRALNLAKRFAIKG- 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHH-HHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCc-
Confidence 4678899999999987643 5799999999999999999 699999999999999999999999999999999998
Q ss_pred CCCCCeEEEEcCCCceee-ecCCCCHHHHHHHHHHHhc
Q psy9102 176 PSDKPLVFVRAEDGKKYA-MKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 176 ~~~~P~i~~~~~~~~~~~-~~g~~~~~~l~~fi~~~~~ 212 (277)
+||+++++.+ +.+. ..|..+.++|.+|+.+...
T Consensus 107 ---~PTl~~f~~G-~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 ---YPTLLLFDKG-KMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred ---CCEEEEEECC-EEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999854 4444 4578999999999998774
No 23
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.75 E-value=4.6e-18 Score=120.65 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=82.1
Q ss_pred cceeeeecC-CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC
Q psy9102 110 NFDEVVTNN-EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED 188 (277)
Q Consensus 110 ~~~~~~~~~-~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~ 188 (277)
+|++.+.++ +++++|.||++||++|+.+ .+.+.++++.+.+.+.++.||++.++.+++.|++.+ +|++++++++
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~----~Pt~~~~~~g 76 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKEL-LPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQA----LPTVYLFAAG 76 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHH-HHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCC----CCEEEEEeCC
Confidence 456666544 6899999999999999999 699999999999889999999999999999999998 9999999855
Q ss_pred CceeeecCCCCHHHHHHHHH
Q psy9102 189 GKKYAMKDEFSVENLESFLT 208 (277)
Q Consensus 189 ~~~~~~~g~~~~~~l~~fi~ 208 (277)
.....+.|..+.++|.+||+
T Consensus 77 ~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 77 QPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEeeeecCCCCHHHHHHHhC
Confidence 44557889999999999873
No 24
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.75 E-value=9.7e-18 Score=120.13 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=85.8
Q ss_pred CeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC-cceEEEecccccchhhhccCcccCCCCCC
Q psy9102 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD-KFTFAISAKDDFQHELNEFGFDYVPSDKP 180 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~~~~~P 180 (277)
.|..++.++|++.+. ..++|.||++||++|+.+ .+.|.++++.+++ .+.++.+|+++++.+++.|+|.+ +|
T Consensus 2 ~v~~l~~~~f~~~~~---~~~lv~f~a~wC~~C~~~-~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~----~P 73 (101)
T cd02994 2 NVVELTDSNWTLVLE---GEWMIEFYAPWCPACQQL-QPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA----LP 73 (101)
T ss_pred ceEEcChhhHHHHhC---CCEEEEEECCCCHHHHHH-hHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcc----cC
Confidence 467789999998663 238899999999999999 6999999998875 49999999999999999999998 99
Q ss_pred eEEEEcCCCceeeecCCCCHHHHHHHHHH
Q psy9102 181 LVFVRAEDGKKYAMKDEFSVENLESFLTK 209 (277)
Q Consensus 181 ~i~~~~~~~~~~~~~g~~~~~~l~~fi~~ 209 (277)
|++++++ |+...+.|..+.++|..||++
T Consensus 74 t~~~~~~-g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 74 TIYHAKD-GVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEEeCC-CCEEEecCCCCHHHHHHHHhC
Confidence 9988865 456788999999999999863
No 25
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.74 E-value=9.3e-18 Score=120.76 Aligned_cols=99 Identities=35% Similarity=0.578 Sum_probs=88.2
Q ss_pred eEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC--cceEEEecccccchhhhccCcccCCCCCC
Q psy9102 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD--KFTFAISAKDDFQHELNEFGFDYVPSDKP 180 (277)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~~~~~P 180 (277)
|..+++++|++.+.+.+++++|+||++||++|+.+ .+.+.++++.+++ .+.++.+|++.+ .++..+++.+ +|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~----~P 75 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKAL-APIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDG----FP 75 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHH-hhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCC----CC
Confidence 67899999999988888999999999999999999 6999999999987 499999999987 5778889877 99
Q ss_pred eEEEEcCCC--ceeeecCCCCHHHHHHHH
Q psy9102 181 LVFVRAEDG--KKYAMKDEFSVENLESFL 207 (277)
Q Consensus 181 ~i~~~~~~~--~~~~~~g~~~~~~l~~fi 207 (277)
+++++.+++ ....+.|..+.+.|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999998766 567889999999999886
No 26
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6e-18 Score=138.30 Aligned_cols=108 Identities=28% Similarity=0.483 Sum_probs=97.6
Q ss_pred CCeEEeecccceeeeecC--CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCC
Q psy9102 101 GPVKVAVAKNFDEVVTNN--EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSD 178 (277)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~--~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~ 178 (277)
..|.++|..||...|..+ .+||+|+||+|||++|+++ .|.+++++.+|+|++.+++|||+..+.++..|||++
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL-~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqs---- 97 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQL-TPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQS---- 97 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHH-HHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCc----
Confidence 449999999999988643 3499999999999999999 599999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCceeeecCCCCHHHHHHHHHHHhcC
Q psy9102 179 KPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAG 213 (277)
Q Consensus 179 ~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~~ 213 (277)
+||++.+..+.-+..+.|....+.|++|+..++..
T Consensus 98 IPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 98 IPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999888766677888988888999999998763
No 27
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.74 E-value=1.3e-17 Score=118.90 Aligned_cols=84 Identities=18% Similarity=0.337 Sum_probs=76.6
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccc-ccchhhhccCcccCCCCCCeEEEEcCCCceeeec
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKD-DFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMK 195 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~ 195 (277)
..+++++|.||++||++|+.+ .+.|.++++.+++ +.++.||++ .++.+++.|+|.+ +||+++++++ ...++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~-~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~----~PT~~lf~~g-~~~~~~ 88 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASF-RPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVG----FPTILLFNST-PRVRYN 88 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhH-hHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCee----cCEEEEEcCC-ceeEec
Confidence 456899999999999999999 6999999999986 889999998 7889999999998 9999999876 788899
Q ss_pred CCCCHHHHHHHH
Q psy9102 196 DEFSVENLESFL 207 (277)
Q Consensus 196 g~~~~~~l~~fi 207 (277)
|..+.++|.+||
T Consensus 89 G~~~~~~l~~f~ 100 (100)
T cd02999 89 GTRTLDSLAAFY 100 (100)
T ss_pred CCCCHHHHHhhC
Confidence 999999999985
No 28
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.73 E-value=1.1e-17 Score=120.05 Aligned_cols=98 Identities=24% Similarity=0.462 Sum_probs=86.0
Q ss_pred eEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC---cceEEEecccccchhhhccCcccCCCCC
Q psy9102 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD---KFTFAISAKDDFQHELNEFGFDYVPSDK 179 (277)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~~~~~ 179 (277)
+..+++++|+..+.+. +++|.||++||++|+.+ .+.+.++++++++ .+.++.+|++.+..+++.|++.. +
T Consensus 2 ~~~l~~~~f~~~~~~~--~~lv~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~----~ 74 (102)
T cd03005 2 VLELTEDNFDHHIAEG--NHFVKFFAPWCGHCKRL-APTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRG----Y 74 (102)
T ss_pred eeECCHHHHHHHhhcC--CEEEEEECCCCHHHHHh-CHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCc----C
Confidence 4567888899887543 59999999999999999 5999999999987 69999999999999999999998 9
Q ss_pred CeEEEEcCCCceeeecCCCCHHHHHHHH
Q psy9102 180 PLVFVRAEDGKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 180 P~i~~~~~~~~~~~~~g~~~~~~l~~fi 207 (277)
|++++++.+.....+.|..+.++|.+||
T Consensus 75 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 75 PTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 9999887666667899999999998875
No 29
>PTZ00062 glutaredoxin; Provisional
Probab=99.73 E-value=1.9e-17 Score=131.77 Aligned_cols=134 Identities=10% Similarity=0.155 Sum_probs=99.5
Q ss_pred ccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC
Q psy9102 109 KNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED 188 (277)
Q Consensus 109 ~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~ 188 (277)
.+|.+++....+.++++|+|+||++|+.+ .+.+.+++++|.+ +.|+.||.+ |+|.+ +|++++++++
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m-~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~----vPtfv~~~~g 72 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQL-MDVCNALVEDFPS-LEFYVVNLA--------DANNE----YGVFEFYQNS 72 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHH-HHHHHHHHHHCCC-cEEEEEccc--------cCccc----ceEEEEEECC
Confidence 34444444334678999999999999999 7999999999976 999999976 89998 9999999977
Q ss_pred CceeeecCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhcHHHHhhcCCCcEEEEE----ECCCCHHHh
Q psy9102 189 GKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEF----YAPWCGHCK 264 (277)
Q Consensus 189 ~~~~~~~g~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~f~~~v~~~~~~~lV~f----~apwC~~c~ 264 (277)
...-++.| .++..|..++..+.... +. ....+..++++.++ +++|.- ++|||++|+
T Consensus 73 ~~i~r~~G-~~~~~~~~~~~~~~~~~----------------~~-~~~~~~v~~li~~~--~Vvvf~Kg~~~~p~C~~C~ 132 (204)
T PTZ00062 73 QLINSLEG-CNTSTLVSFIRGWAQKG----------------SS-EDTVEKIERLIRNH--KILLFMKGSKTFPFCRFSN 132 (204)
T ss_pred EEEeeeeC-CCHHHHHHHHHHHcCCC----------------CH-HHHHHHHHHHHhcC--CEEEEEccCCCCCCChhHH
Confidence 66667776 77999999998886510 00 01234455666442 333322 348999999
Q ss_pred hhhHHHHHHHhh
Q psy9102 265 KLTPVYEEVGEK 276 (277)
Q Consensus 265 ~~~p~~~~la~~ 276 (277)
+...+|++.+..
T Consensus 133 ~~k~~L~~~~i~ 144 (204)
T PTZ00062 133 AVVNMLNSSGVK 144 (204)
T ss_pred HHHHHHHHcCCC
Confidence 999999886543
No 30
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.73 E-value=1.7e-17 Score=118.88 Aligned_cols=99 Identities=31% Similarity=0.524 Sum_probs=88.3
Q ss_pred eecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC--cceEEEecccccchhhhccCcccCCCCCCeEE
Q psy9102 106 AVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD--KFTFAISAKDDFQHELNEFGFDYVPSDKPLVF 183 (277)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~ 183 (277)
+++++|++.+. .+++++|+||++||++|+.+ .+.+.++++.+++ .+.++.+|+++++.+++.|+|.+ +|+++
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~----~P~~~ 74 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNL-APEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG----FPTIK 74 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhh-ChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc----CCEEE
Confidence 35667787775 67899999999999999999 5899999999987 59999999999999999999998 99999
Q ss_pred EEcCCCceeeecCCCCHHHHHHHHHHH
Q psy9102 184 VRAEDGKKYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 184 ~~~~~~~~~~~~g~~~~~~l~~fi~~~ 210 (277)
++++++..+.+.|..+.++|..||+++
T Consensus 75 ~~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 75 FFPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EecCCCcceeecCCCCHHHHHHHHHhc
Confidence 998777688899999999999999875
No 31
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.72 E-value=1.7e-17 Score=120.54 Aligned_cols=101 Identities=19% Similarity=0.341 Sum_probs=85.8
Q ss_pred CeEEeecccceeeee--cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc-cchhhh-ccCcccCC
Q psy9102 102 PVKVAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD-FQHELN-EFGFDYVP 176 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~--~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~-~~~~~~-~~~i~~~~ 176 (277)
.|..++.++|+.++. +.+++++|.||++||++|+++ .+.|.++++.+++. +.++.||++. ...++. .++++.
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~-~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~-- 78 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAM-EASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS-- 78 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHH-hHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc--
Confidence 366788889998874 467899999999999999999 69999999999975 9999999997 466775 599988
Q ss_pred CCCCeEEEEcCCC-ceeeecCC-CCHHHHHHHH
Q psy9102 177 SDKPLVFVRAEDG-KKYAMKDE-FSVENLESFL 207 (277)
Q Consensus 177 ~~~P~i~~~~~~~-~~~~~~g~-~~~~~l~~fi 207 (277)
+||++++++++ ..+.|.|. ++.++|..||
T Consensus 79 --~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 --FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred --CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999887664 47788884 8999999885
No 32
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.72 E-value=6.5e-18 Score=121.46 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=71.4
Q ss_pred cceeeee-cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC
Q psy9102 110 NFDEVVT-NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED 188 (277)
Q Consensus 110 ~~~~~~~-~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~ 188 (277)
+|+..+. +.+++++|.|||+||++|+.| .|.+.+++.++.+.+.|+.||+++++.++..|+|.+ +||+++++++
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m-~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~----iPTf~~fk~G 78 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGRDWDPVCMQM-DEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYD----PPTVMFFFRN 78 (114)
T ss_pred HHHHHHhccCCCEEEEEEECCCChhHHHH-HHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCC----CCEEEEEECC
Confidence 3444444 356799999999999999999 799999999999989999999999999999999998 9999999976
Q ss_pred CceeeecCCC
Q psy9102 189 GKKYAMKDEF 198 (277)
Q Consensus 189 ~~~~~~~g~~ 198 (277)
....+..|..
T Consensus 79 ~~v~~~~G~~ 88 (114)
T cd02954 79 KHMKIDLGTG 88 (114)
T ss_pred EEEEEEcCCC
Confidence 5555655533
No 33
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.72 E-value=2e-16 Score=128.73 Aligned_cols=172 Identities=12% Similarity=0.161 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHhcCCc--eEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcC-CC--CcccCCCCCCHHHHHHHHHH
Q psy9102 6 TNYWRNRILKVAKGFADK--FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE-DG--KKYAMKDEFSVENLESFLTK 80 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~~~--~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~-~~--~~y~~~g~~~~~~i~~fi~~ 80 (277)
++.+.+.++++|+.+ ++ +.++.+|.++.+.+++.|||.. .|++++.++ .. .+| .|..+.+++.+||..
T Consensus 37 C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~~l~~~~~V~~----~Pt~~~f~~g~~~~~~~--~G~~~~~~l~~~i~~ 109 (215)
T TIGR02187 37 CKETEQLLEELSEVS-PKLKLEIYDFDTPEDKEEAEKYGVER----VPTTIILEEGKDGGIRY--TGIPAGYEFAALIED 109 (215)
T ss_pred hHHHHHHHHHHHhhC-CCceEEEEecCCcccHHHHHHcCCCc----cCEEEEEeCCeeeEEEE--eecCCHHHHHHHHHH
Confidence 577889999999998 44 4566666668889999999995 576666532 22 256 898889999999988
Q ss_pred HhcCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCccE-EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEec
Q psy9102 81 VVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDV-LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISA 159 (277)
Q Consensus 81 ~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd 159 (277)
.+.-.-.. +.++ ..+.+. +...++++ ++.||++||++|+.+ .+.+.+++.+. +.+.+..+|
T Consensus 110 ~~~~~~~~----~~L~-----------~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~-~~~l~~l~~~~-~~i~~~~vD 171 (215)
T TIGR02187 110 IVRVSQGE----PGLS-----------EKTVEL-LQSLDEPVRIEVFVTPTCPYCPYA-VLMAHKFALAN-DKILGEMIE 171 (215)
T ss_pred HHHhcCCC----CCCC-----------HHHHHH-HHhcCCCcEEEEEECCCCCCcHHH-HHHHHHHHHhc-CceEEEEEe
Confidence 75321011 1121 111111 12234554 444999999999998 68888988885 459999999
Q ss_pred ccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHHH
Q psy9102 160 KDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTK 209 (277)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~ 209 (277)
.+.++.++..|||.+ +||+++++. +.. +.|....++|.+|+.+
T Consensus 172 ~~~~~~~~~~~~V~~----vPtl~i~~~-~~~--~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 172 ANENPDLAEKYGVMS----VPKIVINKG-VEE--FVGAYPEEQFLEYILS 214 (215)
T ss_pred CCCCHHHHHHhCCcc----CCEEEEecC-CEE--EECCCCHHHHHHHHHh
Confidence 999999999999998 999998764 332 7788899999999875
No 34
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.71 E-value=4.2e-17 Score=117.52 Aligned_cols=100 Identities=34% Similarity=0.563 Sum_probs=88.4
Q ss_pred eEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcC--CcceEEEecccc-cchhhhccCcccCCCCC
Q psy9102 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA--DKFTFAISAKDD-FQHELNEFGFDYVPSDK 179 (277)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~--~~i~~~~vd~~~-~~~~~~~~~i~~~~~~~ 179 (277)
+..+++++|+..+.+.+++++|.||++||++|+.+ .+.+.++++.++ +.+.++.+|++. ++.+++.|+|.+ +
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~----~ 76 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNL-APEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG----F 76 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhh-ChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC----c
Confidence 45678889999887777899999999999999999 699999999997 459999999999 899999999998 9
Q ss_pred CeEEEEcCCC-ceeeecCCCCHHHHHHHH
Q psy9102 180 PLVFVRAEDG-KKYAMKDEFSVENLESFL 207 (277)
Q Consensus 180 P~i~~~~~~~-~~~~~~g~~~~~~l~~fi 207 (277)
|++++++.++ ....+.|..+.++|.+||
T Consensus 77 P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999888664 567788999999999885
No 35
>PHA02278 thioredoxin-like protein
Probab=99.70 E-value=3.6e-17 Score=116.74 Aligned_cols=91 Identities=15% Similarity=0.221 Sum_probs=76.9
Q ss_pred cceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc----chhhhccCcccCCCCCCeEEEE
Q psy9102 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF----QHELNEFGFDYVPSDKPLVFVR 185 (277)
Q Consensus 110 ~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~~~~~P~i~~~ 185 (277)
+|.+.+ +.+++++|+|||+||++|+.+ .|.+.++++++...+.|+.+|++.+ +.+++.|+|.+ +||+++|
T Consensus 6 ~~~~~i-~~~~~vvV~F~A~WCgpCk~m-~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~----iPT~i~f 79 (103)
T PHA02278 6 DLNTAI-RQKKDVIVMITQDNCGKCEIL-KSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS----TPVLIGY 79 (103)
T ss_pred HHHHHH-hCCCcEEEEEECCCCHHHHhH-HHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc----ccEEEEE
Confidence 455544 466899999999999999999 7999999988766678899999876 57899999998 9999999
Q ss_pred cCCCceeeecCCCCHHHHHHH
Q psy9102 186 AEDGKKYAMKDEFSVENLESF 206 (277)
Q Consensus 186 ~~~~~~~~~~g~~~~~~l~~f 206 (277)
+++....+..|..+.+.|.++
T Consensus 80 k~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 80 KDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred ECCEEEEEEeCCCCHHHHHhh
Confidence 977667788898888888765
No 36
>PRK10996 thioredoxin 2; Provisional
Probab=99.68 E-value=1.7e-16 Score=120.13 Aligned_cols=104 Identities=20% Similarity=0.423 Sum_probs=90.3
Q ss_pred CCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCC
Q psy9102 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKP 180 (277)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P 180 (277)
..+..++..+|+..+ +.+++++|+||++||++|+.+ .+.|.++++++.+.+.|+.+|+++++.+++.|+|.+ +|
T Consensus 35 ~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~-~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~----~P 108 (139)
T PRK10996 35 GEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNF-APIFEDVAAERSGKVRFVKVNTEAERELSARFRIRS----IP 108 (139)
T ss_pred CCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHH-HHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCc----cC
Confidence 345557778888755 457899999999999999999 699999999999889999999999999999999998 99
Q ss_pred eEEEEcCCCceeeecCCCCHHHHHHHHHHH
Q psy9102 181 LVFVRAEDGKKYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 181 ~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 210 (277)
++++++++.....+.|..+.+.|.+|++++
T Consensus 109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 999998655566778999999999999875
No 37
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.68 E-value=1.2e-16 Score=114.74 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=76.6
Q ss_pred ccceeeeecC-CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc---hhhhccCcccCCCCCCeEEE
Q psy9102 109 KNFDEVVTNN-EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ---HELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 109 ~~~~~~~~~~-~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~~~~~P~i~~ 184 (277)
++|++.+.+. +++++|.||++||++|+.+ .|.+.++++++ +.+.|+.||++++. .+++.|+|.+ +||+++
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~-~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~----~Pt~~~ 77 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKI-YPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIE----VPHFLF 77 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHH-hHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCc----CCEEEE
Confidence 4455555543 7899999999999999999 59999999999 55999999998874 7889999998 999999
Q ss_pred EcCCCceeeecCCCCHHHHHHHHHH
Q psy9102 185 RAEDGKKYAMKDEFSVENLESFLTK 209 (277)
Q Consensus 185 ~~~~~~~~~~~g~~~~~~l~~fi~~ 209 (277)
++++....++.| ....+|.+-+..
T Consensus 78 ~~~G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred EeCCeEEEEEeC-CCHHHHHHHHHh
Confidence 876555667777 667777776643
No 38
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.68 E-value=1.5e-16 Score=114.46 Aligned_cols=99 Identities=25% Similarity=0.399 Sum_probs=85.4
Q ss_pred eEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcC--CcceEEEecccc--cchhhhccCcccCCCC
Q psy9102 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA--DKFTFAISAKDD--FQHELNEFGFDYVPSD 178 (277)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~--~~i~~~~vd~~~--~~~~~~~~~i~~~~~~ 178 (277)
+..++..+|+..+.+ +++++|+||++||++|+++ .+.+.++++.++ +.+.++.+|++. ++.+++.+|+.+
T Consensus 2 ~~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~---- 75 (104)
T cd02997 2 VVHLTDEDFRKFLKK-EKHVLVMFYAPWCGHCKKM-KPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG---- 75 (104)
T ss_pred eEEechHhHHHHHhh-CCCEEEEEECCCCHHHHHh-CHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc----
Confidence 456777888877654 4699999999999999999 699999999987 558999999998 888999999988
Q ss_pred CCeEEEEcCCCceeeecCCCCHHHHHHHH
Q psy9102 179 KPLVFVRAEDGKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 179 ~P~i~~~~~~~~~~~~~g~~~~~~l~~fi 207 (277)
+|++++++++.....+.|..+.+.+.+||
T Consensus 76 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 76 FPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred ccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 99999998765577889999999998875
No 39
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.68 E-value=1.5e-16 Score=113.64 Aligned_cols=99 Identities=24% Similarity=0.473 Sum_probs=86.0
Q ss_pred ecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEc
Q psy9102 107 VAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRA 186 (277)
Q Consensus 107 ~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~ 186 (277)
+.++|...+.+.+++++|+||++||++|+.+ .+.+.++++.+.+.+.|+.+|++.++.+++.|++.. +|++++++
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~----~P~~~~~~ 76 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMI-APILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRS----IPTLLLFK 76 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHh-CHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc----CCEEEEEe
Confidence 3456666666666799999999999999999 589999999998889999999999999999999998 99999997
Q ss_pred CCCceeeecCCCCHHHHHHHHHHH
Q psy9102 187 EDGKKYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 187 ~~~~~~~~~g~~~~~~l~~fi~~~ 210 (277)
.+.....+.|..+.+.|.+|+++.
T Consensus 77 ~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 77 NGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CCcEeeeecCCCCHHHHHHHHHhh
Confidence 665566777888999999999865
No 40
>KOG0907|consensus
Probab=99.67 E-value=1.9e-16 Score=112.99 Aligned_cols=86 Identities=24% Similarity=0.450 Sum_probs=75.9
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecC
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKD 196 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g 196 (277)
..+++++|+|||+||++|+.+ .|.+.+|+.+|.+ +.|+.||+++...+++.+++.. .||+.+++++.+...+.|
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i-~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~----~PTf~f~k~g~~~~~~vG 92 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAI-APKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKA----MPTFVFYKGGEEVDEVVG 92 (106)
T ss_pred CCCCeEEEEEECCCCcchhhh-hhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceE----eeEEEEEECCEEEEEEec
Confidence 446899999999999999999 7999999999999 9999999999888999999998 999999987776777777
Q ss_pred CCCHHHHHHHHHH
Q psy9102 197 EFSVENLESFLTK 209 (277)
Q Consensus 197 ~~~~~~l~~fi~~ 209 (277)
.+.+.+.+.+..
T Consensus 93 -a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 93 -ANKAELEKKIAK 104 (106)
T ss_pred -CCHHHHHHHHHh
Confidence 566677777654
No 41
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.66 E-value=2.7e-16 Score=112.70 Aligned_cols=95 Identities=18% Similarity=0.378 Sum_probs=79.8
Q ss_pred ecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccccchhhhccCcccCCCCCCeEEEE
Q psy9102 107 VAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVR 185 (277)
Q Consensus 107 ~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~ 185 (277)
+.++|+.++ +.+++++|+||++||++|+.+ .+.+.++++++++. +.|+.+|++ ...+++.|+|+. +||++++
T Consensus 6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~-~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~----~Pt~~~~ 78 (102)
T cd02948 6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAV-VSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKC----EPTFLFY 78 (102)
T ss_pred CHHHHHHHH-ccCCeEEEEEECCcCHhHHHH-hHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCc----CcEEEEE
Confidence 455667755 467899999999999999999 69999999999864 789999998 778899999998 9999999
Q ss_pred cCCCceeeecCCCCHHHHHHHHHH
Q psy9102 186 AEDGKKYAMKDEFSVENLESFLTK 209 (277)
Q Consensus 186 ~~~~~~~~~~g~~~~~~l~~fi~~ 209 (277)
+++....+..| .+.+.|.++|..
T Consensus 79 ~~g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred ECCEEEEEEec-CChHHHHHHHhh
Confidence 86555666777 588999998865
No 42
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.66 E-value=4e-16 Score=113.99 Aligned_cols=90 Identities=20% Similarity=0.281 Sum_probs=78.0
Q ss_pred CCCeEEeecccceeeeecC--CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCC
Q psy9102 100 SGPVKVAVAKNFDEVVTNN--EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPS 177 (277)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~--~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~ 177 (277)
.+.+..++.++|...+.+. +++++|+||++||++|+.+ .+.++++++++.+ +.|+.||++++ .+++.|+|.+
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l-~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~--- 76 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKIL-DSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKV--- 76 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHH-HHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCc---
Confidence 3567788889998888766 3899999999999999999 6999999999986 89999999988 9999999998
Q ss_pred CCCeEEEEcCCCceeeecC
Q psy9102 178 DKPLVFVRAEDGKKYAMKD 196 (277)
Q Consensus 178 ~~P~i~~~~~~~~~~~~~g 196 (277)
+||+++|+.+....++.|
T Consensus 77 -~Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 77 -LPTLLVYKNGELIDNIVG 94 (113)
T ss_pred -CCEEEEEECCEEEEEEec
Confidence 999999987655556655
No 43
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.65 E-value=3.8e-16 Score=111.53 Aligned_cols=97 Identities=12% Similarity=0.090 Sum_probs=85.6
Q ss_pred CeEEeecccceeeeecCCccEEEEEecCC--ChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCC
Q psy9102 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPW--CGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDK 179 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~v~F~~~~--c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~ 179 (277)
.+-.++..||++.+ ..+..++|.||++| |++|+.+ .|.|.+++++|.+.+.|+.+|+++++.++..|+|.+ +
T Consensus 11 ~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i-~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~s----I 84 (111)
T cd02965 11 GWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDV-AVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLR----T 84 (111)
T ss_pred CCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhh-HhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCc----C
Confidence 45567888999766 77789999999997 9999999 699999999999999999999999999999999999 9
Q ss_pred CeEEEEcCCCceeeecCCCCHHHHH
Q psy9102 180 PLVFVRAEDGKKYAMKDEFSVENLE 204 (277)
Q Consensus 180 P~i~~~~~~~~~~~~~g~~~~~~l~ 204 (277)
||+++++.+.....+.|..+.+++.
T Consensus 85 PTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 85 PALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CEEEEEECCEEEEEEeCccCHHHHh
Confidence 9999999766666788988877764
No 44
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.65 E-value=3.9e-16 Score=116.56 Aligned_cols=103 Identities=12% Similarity=0.108 Sum_probs=83.9
Q ss_pred cccceeeee-cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeE-EEE
Q psy9102 108 AKNFDEVVT-NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLV-FVR 185 (277)
Q Consensus 108 ~~~~~~~~~-~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i-~~~ 185 (277)
..+|++.+. ..+++++|.|||+||++|+.+ .|.|.++|+++++.+.|+.||++++++++..|+|++ .|++ +++
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m-~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~----~~t~~~ff 85 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQM-DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PCTVMFFF 85 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHH-HHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccC----CCcEEEEE
Confidence 344555554 346799999999999999999 799999999999989999999999999999999996 6655 488
Q ss_pred cCCC-ceeeecC--------CCCHHHHHHHHHHHhcCCC
Q psy9102 186 AEDG-KKYAMKD--------EFSVENLESFLTKVVAGEV 215 (277)
Q Consensus 186 ~~~~-~~~~~~g--------~~~~~~l~~fi~~~~~~~~ 215 (277)
+++. ...+..| ..+.++|.+-++.++.|-.
T Consensus 86 k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 86 RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred ECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 8665 4556677 5677888888888776543
No 45
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.64 E-value=5.6e-16 Score=111.81 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=79.3
Q ss_pred CeEEeecccceeeeecCCccEEEEEec--CCCh---hhhhhhHHHHHHHHhhcCCcceEEEecc-----cccchhhhccC
Q psy9102 102 PVKVAVAKNFDEVVTNNEKDVLVEFYA--PWCG---HCTNYWRNRILKVAKGFADKFTFAISAK-----DDFQHELNEFG 171 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~v~F~~--~~c~---~c~~~~~~~~~~la~~~~~~i~~~~vd~-----~~~~~~~~~~~ 171 (277)
.+..|+..||++.+ ..++.+||.||| |||+ +|+++ .+.+.+.+. .|.++.||| .++.++|++||
T Consensus 2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~L-A~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRL-AESSASATD----DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHH-HHHHHhhcC----ceEEEEEecccccchhhHHHHHHhC
Confidence 35678999999976 455889999999 8899 77766 455555443 399999999 45678999999
Q ss_pred cccCCCCCCeEEEEcCCC--ceeeecCC-CCHHHHHHHHHHH
Q psy9102 172 FDYVPSDKPLVFVRAEDG--KKYAMKDE-FSVENLESFLTKV 210 (277)
Q Consensus 172 i~~~~~~~P~i~~~~~~~--~~~~~~g~-~~~~~l~~fi~~~ 210 (277)
|+. +++||+.+|.+++ ....|.|. ++.+.|..||.+.
T Consensus 76 I~~--~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDK--ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCc--CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 982 1299998888653 45688996 9999999999863
No 46
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.64 E-value=1.3e-15 Score=109.60 Aligned_cols=94 Identities=24% Similarity=0.487 Sum_probs=80.1
Q ss_pred ccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC---cceEEEecccccchhhhccCcccCCCCCCeEEEE
Q psy9102 109 KNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD---KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVR 185 (277)
Q Consensus 109 ~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~ 185 (277)
++|++. ..+++++|.||++||++|+.+ .+.|.++++++++ .+.++.+|++..+.+++.|+|.+ +|+++++
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~----~Pt~~l~ 79 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKL-EPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRG----YPTIKLL 79 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhh-ChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCcc----ccEEEEE
Confidence 455653 335799999999999999999 5999999999853 38899999999999999999998 9999988
Q ss_pred cCCCceeeecCCCCHHHHHHHHHHH
Q psy9102 186 AEDGKKYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 186 ~~~~~~~~~~g~~~~~~l~~fi~~~ 210 (277)
+++ ....+.|..+.+.|.+|+++.
T Consensus 80 ~~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 80 KGD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred cCC-CceeecCCCCHHHHHHHHHhh
Confidence 754 567788999999999999864
No 47
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.63 E-value=3.4e-15 Score=113.31 Aligned_cols=95 Identities=26% Similarity=0.435 Sum_probs=81.0
Q ss_pred ecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc--chhhhccCcccCCCCCCeEEEEcCCCc-ee
Q psy9102 116 TNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF--QHELNEFGFDYVPSDKPLVFVRAEDGK-KY 192 (277)
Q Consensus 116 ~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~~~~~P~i~~~~~~~~-~~ 192 (277)
...+++++|+||++||++|+.+ .+.+.+++++|.+.+.|+.||++.. ..++..|+|.+ +|++++++.+|+ ..
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~-~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~----iPt~v~~~~~G~~v~ 91 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEM-APDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG----IPHFVFLDREGNEEG 91 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHh-HHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC----CCEEEEECCCCCEEE
Confidence 3567899999999999999999 5999999999988788888877654 46789999998 999999976665 45
Q ss_pred eecCCCCHHHHHHHHHHHhcCCC
Q psy9102 193 AMKDEFSVENLESFLTKVVAGEV 215 (277)
Q Consensus 193 ~~~g~~~~~~l~~fi~~~~~~~~ 215 (277)
.+.|..+.+.|.++|+.++.+.-
T Consensus 92 ~~~G~~~~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 92 QSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCC
Confidence 67898999999999999997653
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.62 E-value=9.4e-16 Score=109.22 Aligned_cols=96 Identities=31% Similarity=0.530 Sum_probs=83.3
Q ss_pred eecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhc--CCcceEEEecccccchhhhccCcccCCCCCCeEE
Q psy9102 106 AVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGF--ADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVF 183 (277)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~ 183 (277)
++.++|.+.+.+.+ +++|+||++||++|+.+ .+.+.++++.+ .+.+.|+.+|++.+..+++.|+|.. +|+++
T Consensus 3 l~~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~----~Pt~~ 76 (101)
T cd02961 3 LTDDNFDELVKDSK-DVLVEFYAPWCGHCKAL-APEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG----YPTIK 76 (101)
T ss_pred ccHHHHHHHHhCCC-cEEEEEECCCCHHHHhh-hHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC----CCEEE
Confidence 45667777665554 99999999999999999 69999999999 4679999999999999999999998 99999
Q ss_pred EEcCC-CceeeecCCCCHHHHHHHH
Q psy9102 184 VRAED-GKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 184 ~~~~~-~~~~~~~g~~~~~~l~~fi 207 (277)
+++++ ....++.|..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCCCcCHHHHHhhC
Confidence 99877 4577888989999998874
No 49
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.61 E-value=3.3e-15 Score=108.87 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=80.3
Q ss_pred CCeEEeec-ccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCC
Q psy9102 101 GPVKVAVA-KNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDK 179 (277)
Q Consensus 101 ~~i~~~~~-~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~ 179 (277)
+.+..++. ++|.+.+. .+++++|+||++||++|+.+ .+.+.++++++.+ +.|+.||+++++.+++.|+|.. +
T Consensus 4 g~v~~i~~~~~~~~~i~-~~~~vvV~f~a~~c~~C~~~-~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~----v 76 (113)
T cd02989 4 GKYREVSDEKEFFEIVK-SSERVVCHFYHPEFFRCKIM-DKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKV----L 76 (113)
T ss_pred CCeEEeCCHHHHHHHHh-CCCcEEEEEECCCCccHHHH-HHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCcc----C
Confidence 34555555 67777664 44799999999999999999 7999999999986 9999999999999999999998 9
Q ss_pred CeEEEEcCCCceeeecC--------CCCHHHHHHHH
Q psy9102 180 PLVFVRAEDGKKYAMKD--------EFSVENLESFL 207 (277)
Q Consensus 180 P~i~~~~~~~~~~~~~g--------~~~~~~l~~fi 207 (277)
||+++|+++....++.| ..+.+++..|+
T Consensus 77 Pt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 77 PTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99999986654444433 45566666654
No 50
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.61 E-value=2.4e-15 Score=106.86 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=80.2
Q ss_pred eeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCcee
Q psy9102 113 EVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKY 192 (277)
Q Consensus 113 ~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~ 192 (277)
..+.+.+++++++||++||+.|+.+ .+.+.++++++.+++.++.+|+++.+++...+++.+ +|++++++++....
T Consensus 7 ~~~~~~~~~vlv~f~a~~C~~C~~~-~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~----vPt~~i~~~g~~v~ 81 (97)
T cd02949 7 KLYHESDRLILVLYTSPTCGPCRTL-KPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMG----TPTVQFFKDKELVK 81 (97)
T ss_pred HHHHhCCCeEEEEEECCCChhHHHH-HHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCee----ccEEEEEECCeEEE
Confidence 3445677899999999999999999 699999999998889999999999999999999998 99999998655567
Q ss_pred eecCCCCHHHHHHHHH
Q psy9102 193 AMKDEFSVENLESFLT 208 (277)
Q Consensus 193 ~~~g~~~~~~l~~fi~ 208 (277)
++.|..+.++|.+|++
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 7889899999998874
No 51
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.59 E-value=5.4e-15 Score=112.66 Aligned_cols=103 Identities=15% Similarity=0.297 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCeEEeecccceeeeec-CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC-cceEEEecccccchhhhc
Q psy9102 92 SEPVPEDNSGPVKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD-KFTFAISAKDDFQHELNE 169 (277)
Q Consensus 92 s~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~~~~~~~~~ 169 (277)
+++.+.. .+.+..++.++|++.+.. .+++++|.||++||++|+.+ .+.+.++++++.+ .+.|+.||+++++++++.
T Consensus 20 ~~~~~~~-~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l-~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~ 97 (152)
T cd02962 20 PQPLYMG-PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNF-APVFAELSLKYNNNNLKFGKIDIGRFPNVAEK 97 (152)
T ss_pred CCCccCC-CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHH-HHHHHHHHHHcccCCeEEEEEECCCCHHHHHH
Confidence 3334433 367788999999987754 45689999999999999999 6999999999985 499999999999999999
Q ss_pred cCcccC--CCCCCeEEEEcCCCceeeecC
Q psy9102 170 FGFDYV--PSDKPLVFVRAEDGKKYAMKD 196 (277)
Q Consensus 170 ~~i~~~--~~~~P~i~~~~~~~~~~~~~g 196 (277)
|+|... -.++||+++|+.+....++.|
T Consensus 98 ~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 98 FRVSTSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred cCceecCCcCCCCEEEEEECCEEEEEEec
Confidence 998630 023899999986655556654
No 52
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.59 E-value=5.1e-15 Score=108.16 Aligned_cols=99 Identities=26% Similarity=0.395 Sum_probs=79.6
Q ss_pred CeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC---cceEEEecccc--cchhhhccCcccCC
Q psy9102 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD---KFTFAISAKDD--FQHELNEFGFDYVP 176 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~---~i~~~~vd~~~--~~~~~~~~~i~~~~ 176 (277)
.+.+++.++|++.+.+.+++++|.||++||++|+.+ .+.|.++++.+++ .+.|+.+||+. +..+++.|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~-~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~-- 78 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAF-APTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG-- 78 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHH-hHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC--
Confidence 467888999999998888899999999999999999 6999999998864 48999999864 567899999998
Q ss_pred CCCCeEEEEcCCCce----eeecCC-CCHHHHHH
Q psy9102 177 SDKPLVFVRAEDGKK----YAMKDE-FSVENLES 205 (277)
Q Consensus 177 ~~~P~i~~~~~~~~~----~~~~g~-~~~~~l~~ 205 (277)
+|++++|+++... ..+.|. +..+++++
T Consensus 79 --~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 79 --YPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred --CCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 9999999866522 134443 55555544
No 53
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.59 E-value=4.8e-15 Score=131.39 Aligned_cols=106 Identities=21% Similarity=0.352 Sum_probs=89.7
Q ss_pred CCCeEEeecccceeeee--cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccccc-hhh-hccCccc
Q psy9102 100 SGPVKVAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDFQ-HEL-NEFGFDY 174 (277)
Q Consensus 100 ~~~i~~~~~~~~~~~~~--~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~~-~~~-~~~~i~~ 174 (277)
...|..++.+||+..+. +.+++++|.||++||++|+.+ .+.|.++|++|++. +.|+.||++.+. .++ +.|+|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m-~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAM-EASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHH-HHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 45788899999999874 567899999999999999999 69999999999875 899999998764 344 6899998
Q ss_pred CCCCCCeEEEEcCCC-ceeeec-CCCCHHHHHHHHHHH
Q psy9102 175 VPSDKPLVFVRAEDG-KKYAMK-DEFSVENLESFLTKV 210 (277)
Q Consensus 175 ~~~~~P~i~~~~~~~-~~~~~~-g~~~~~~l~~fi~~~ 210 (277)
+||+++|++++ ....|. |.++.+.|..||+.+
T Consensus 429 ----~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 ----FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ----cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99998888664 456676 589999999999854
No 54
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.59 E-value=7.1e-15 Score=105.56 Aligned_cols=90 Identities=34% Similarity=0.565 Sum_probs=77.9
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC-CceeeecC-
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED-GKKYAMKD- 196 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~-~~~~~~~g- 196 (277)
++++++.|+++||++|+.+ .+.+.++|++|++++.|++||+++++.++..||+.. ..+|++++++.. +.++.+.+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~-~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~--~~~P~~~~~~~~~~~k~~~~~~ 88 (103)
T cd02982 12 GKPLLVLFYNKDDSESEEL-RERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKE--EDLPVIAIINLSDGKKYLMPEE 88 (103)
T ss_pred CCCEEEEEEcCChhhHHHH-HHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCCh--hhCCEEEEEecccccccCCCcc
Confidence 5899999999999999999 799999999999999999999999999999999982 239999888863 45665554
Q ss_pred CCCHHHHHHHHHHHh
Q psy9102 197 EFSVENLESFLTKVV 211 (277)
Q Consensus 197 ~~~~~~l~~fi~~~~ 211 (277)
..+.++|.+||.+++
T Consensus 89 ~~~~~~l~~fi~~~~ 103 (103)
T cd02982 89 ELTAESLEEFVEDFL 103 (103)
T ss_pred ccCHHHHHHHHHhhC
Confidence 459999999998763
No 55
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.58 E-value=4.6e-15 Score=105.33 Aligned_cols=92 Identities=15% Similarity=0.289 Sum_probs=75.2
Q ss_pred cceeeeecC-CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC
Q psy9102 110 NFDEVVTNN-EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED 188 (277)
Q Consensus 110 ~~~~~~~~~-~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~ 188 (277)
+|++.+... +++++|.||++||++|+.+ .+.|.++++++...+.++.+|+++.+.++..|++.. +||+++++.+
T Consensus 4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~-~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~----~Pt~~~~~~g 78 (97)
T cd02984 4 EFEELLKSDASKLLVLHFWAPWAEPCKQM-NQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITA----VPTFVFFRNG 78 (97)
T ss_pred HHHHHHhhCCCCEEEEEEECCCCHHHHHH-hHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCcc----ccEEEEEECC
Confidence 445545444 5899999999999999999 699999999976679999999999999999999998 9999998854
Q ss_pred CceeeecCCCCHHHHHHHH
Q psy9102 189 GKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 189 ~~~~~~~g~~~~~~l~~fi 207 (277)
....+..| .+.+.|.+.|
T Consensus 79 ~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEEEeC-CCHHHHHHhh
Confidence 44445566 6777777665
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.58 E-value=6.1e-15 Score=130.68 Aligned_cols=106 Identities=21% Similarity=0.364 Sum_probs=90.6
Q ss_pred CCCeEEeecccceeeee--cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEeccc-ccchhhh-ccCccc
Q psy9102 100 SGPVKVAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKD-DFQHELN-EFGFDY 174 (277)
Q Consensus 100 ~~~i~~~~~~~~~~~~~--~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~-~~~~~~~-~~~i~~ 174 (277)
...+..++.++|++++. +.+++++|+||++||++|+.| .+.|.+++++|.+. +.|+.+|++ .+..++. .|+|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m-~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAM-EASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHH-HHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 34678899999998774 577899999999999999999 69999999999875 999999999 6677775 699998
Q ss_pred CCCCCCeEEEEcCCC-ceeeecC-CCCHHHHHHHHHHH
Q psy9102 175 VPSDKPLVFVRAEDG-KKYAMKD-EFSVENLESFLTKV 210 (277)
Q Consensus 175 ~~~~~P~i~~~~~~~-~~~~~~g-~~~~~~l~~fi~~~ 210 (277)
+||+++|+++. ....|.| .++.++|..||+.+
T Consensus 423 ----~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 ----FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ----eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999887654 4567764 79999999999864
No 57
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.57 E-value=8.2e-15 Score=105.46 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=73.7
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHH---HHHHhhcCCcceEEEecccc----cchhhhccCcccCCCCCCeEEEEcC-C
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRI---LKVAKGFADKFTFAISAKDD----FQHELNEFGFDYVPSDKPLVFVRAE-D 188 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~---~~la~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~~~~~P~i~~~~~-~ 188 (277)
+.+++++|.||++||++|+.+ .+.+ .++++.+++.+.++.+|+++ ...+++.|++.+ +||++++++ +
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~----~Pti~~~~~~~ 83 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVN-EKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG----PPTYLFYGPGG 83 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHH-HHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCC----CCEEEEECCCC
Confidence 566899999999999999999 5666 57888888779999999987 467889999998 999999985 4
Q ss_pred C-ceeeecCCCCHHHHHHHHH
Q psy9102 189 G-KKYAMKDEFSVENLESFLT 208 (277)
Q Consensus 189 ~-~~~~~~g~~~~~~l~~fi~ 208 (277)
| ...++.|..+.++|.++|+
T Consensus 84 g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 84 EPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCcccccccCHHHHHHHhC
Confidence 4 4677889999999988873
No 58
>KOG4277|consensus
Probab=99.57 E-value=1.6e-14 Score=117.63 Aligned_cols=87 Identities=23% Similarity=0.398 Sum_probs=79.5
Q ss_pred ccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc---ceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecC
Q psy9102 120 KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK---FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKD 196 (277)
Q Consensus 120 ~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~---i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g 196 (277)
..|+|.||||||++|+++ +|+|.++..++++. +.++..||+..+.++.+|||++ ||||.+++++ ..+.|.|
T Consensus 44 diW~VdFYAPWC~HCKkL-ePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqG----YPTIk~~kgd-~a~dYRG 117 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKL-EPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQG----YPTIKFFKGD-HAIDYRG 117 (468)
T ss_pred CeEEEEeechhhhhcccc-cchhHHhCcchhhcCCceeecccccccchhhHhhhccCC----CceEEEecCC-eeeecCC
Confidence 579999999999999999 89999999998875 8899999999999999999998 9999999865 4888999
Q ss_pred CCCHHHHHHHHHHHhc
Q psy9102 197 EFSVENLESFLTKVVA 212 (277)
Q Consensus 197 ~~~~~~l~~fi~~~~~ 212 (277)
.++.+.|..|..+...
T Consensus 118 ~R~Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAA 133 (468)
T ss_pred CccHHHHHHHHHhccc
Confidence 9999999999988654
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.56 E-value=1.3e-14 Score=113.74 Aligned_cols=104 Identities=22% Similarity=0.326 Sum_probs=86.0
Q ss_pred CCCCeEEeec-ccceeeeecCC--ccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccC
Q psy9102 99 NSGPVKVAVA-KNFDEVVTNNE--KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYV 175 (277)
Q Consensus 99 ~~~~i~~~~~-~~~~~~~~~~~--~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~ 175 (277)
..+.+..++. .+|...+...+ .+++|+||++||++|+.+ .+.|.+||.+|.. +.|+.||++.. .++..|+|..
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m-~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~- 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAAL-NSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDA- 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHH-HHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCC-
Confidence 3577888888 99999886654 499999999999999999 7999999999975 99999999987 7889999998
Q ss_pred CCCCCeEEEEcCCCceeeecC-------CCCHHHHHHHHHH
Q psy9102 176 PSDKPLVFVRAEDGKKYAMKD-------EFSVENLESFLTK 209 (277)
Q Consensus 176 ~~~~P~i~~~~~~~~~~~~~g-------~~~~~~l~~fi~~ 209 (277)
+||+++|.++..+..+.| .++.+.|..|+..
T Consensus 136 ---vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 ---LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred ---CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 999999986554434432 5677788877754
No 60
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.56 E-value=1.5e-14 Score=103.16 Aligned_cols=90 Identities=11% Similarity=0.142 Sum_probs=72.1
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCc-ee----
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK-KY---- 192 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~-~~---- 192 (277)
.+++++|.|+++||++|+.+ .|.+.++|++|++.+.|+.||+++.+++++.|+|+. .||++++.++.. ..
T Consensus 13 ~~klVVVdF~a~WC~pCk~m-dp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~a----mPtfvffkngkh~~~d~gt 87 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQL-DDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISY----IPSTIFFFNGQHMKVDYGS 87 (114)
T ss_pred CCCEEEEEEeCCCChhHHHH-HHHHHHHHHHccCceEEEEEeccccHHHHHhcCcee----CcEEEEEECCcEEEEecCC
Confidence 36899999999999999999 899999999998779999999999999999999998 999987764321 22
Q ss_pred ----eecCC-CCHHHHHHHHHHHhc
Q psy9102 193 ----AMKDE-FSVENLESFLTKVVA 212 (277)
Q Consensus 193 ----~~~g~-~~~~~l~~fi~~~~~ 212 (277)
.+++. -+.+++++-++-...
T Consensus 88 ~~~~k~~~~~~~k~~~idi~e~~yr 112 (114)
T cd02986 88 PDHTKFVGSFKTKQDFIDLIEVIYR 112 (114)
T ss_pred CCCcEEEEEcCchhHHHHHHHHHHc
Confidence 22222 244677777765543
No 61
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.56 E-value=1.9e-14 Score=104.94 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=77.3
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCc--eeeec
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK--KYAMK 195 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~--~~~~~ 195 (277)
.+..++|.||++||++|+.+ .+.+.+++..+ +++.|..+|+++++.++..|++.. +||+++++++++ ..++.
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~-~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~----vPt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVT-KQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVER----VPTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred CCeEEEEEeCCCCCCChHHH-HHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCc----CCEEEEEeCCeecceEEEE
Confidence 34678899999999999999 79999999887 569999999999999999999998 999999986543 33788
Q ss_pred CCCCHHHHHHHHHHHhc
Q psy9102 196 DEFSVENLESFLTKVVA 212 (277)
Q Consensus 196 g~~~~~~l~~fi~~~~~ 212 (277)
|..+..++.+||+.+++
T Consensus 95 G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 95 GLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecCchHHHHHHHHHHHh
Confidence 98888999999998764
No 62
>PTZ00051 thioredoxin; Provisional
Probab=99.51 E-value=4.6e-14 Score=100.35 Aligned_cols=88 Identities=19% Similarity=0.355 Sum_probs=72.6
Q ss_pred ccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC
Q psy9102 109 KNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED 188 (277)
Q Consensus 109 ~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~ 188 (277)
++|.. +.+.+++++|+||++||++|+.+ .+.+.++++++.+ +.|+.+|++++..+++.|++.+ +|++++++.+
T Consensus 9 ~~~~~-~~~~~~~vli~f~~~~C~~C~~~-~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~~g 81 (98)
T PTZ00051 9 AEFES-TLSQNELVIVDFYAEWCGPCKRI-APFYEECSKEYTK-MVFVKVDVDELSEVAEKENITS----MPTFKVFKNG 81 (98)
T ss_pred HHHHH-HHhcCCeEEEEEECCCCHHHHHH-hHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCce----eeEEEEEeCC
Confidence 34444 34567899999999999999999 6999999998876 9999999999999999999998 9999988766
Q ss_pred CceeeecCCCCHHHHH
Q psy9102 189 GKKYAMKDEFSVENLE 204 (277)
Q Consensus 189 ~~~~~~~g~~~~~~l~ 204 (277)
.....+.| ...++|.
T Consensus 82 ~~~~~~~G-~~~~~~~ 96 (98)
T PTZ00051 82 SVVDTLLG-ANDEALK 96 (98)
T ss_pred eEEEEEeC-CCHHHhh
Confidence 55667777 4555554
No 63
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.50 E-value=1.3e-13 Score=102.57 Aligned_cols=92 Identities=17% Similarity=0.292 Sum_probs=75.9
Q ss_pred cCC-ccEEEEEecCCChhhhhhhHHHHH---HHHhhcCCcceEEEeccccc-------------chhhhccCcccCCCCC
Q psy9102 117 NNE-KDVLVEFYAPWCGHCTNYWRNRIL---KVAKGFADKFTFAISAKDDF-------------QHELNEFGFDYVPSDK 179 (277)
Q Consensus 117 ~~~-~~~~v~F~~~~c~~c~~~~~~~~~---~la~~~~~~i~~~~vd~~~~-------------~~~~~~~~i~~~~~~~ 179 (277)
..+ ++++|.||++||++|+.+ .+.+. ++.+.+++.+.++.+|++.. ..++..|++.+ +
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~----~ 85 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKL-KRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF----T 85 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHH-HHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc----c
Confidence 455 899999999999999998 46664 56667766788999998764 56789999998 9
Q ss_pred CeEEEEcCC-Cc-eeeecCCCCHHHHHHHHHHHhcC
Q psy9102 180 PLVFVRAED-GK-KYAMKDEFSVENLESFLTKVVAG 213 (277)
Q Consensus 180 P~i~~~~~~-~~-~~~~~g~~~~~~l~~fi~~~~~~ 213 (277)
||+++++++ |+ ..++.|..+.+.+.++|+.++++
T Consensus 86 Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 86 PTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred cEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999999876 55 55788989999999999988764
No 64
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.47 E-value=2.3e-13 Score=95.02 Aligned_cols=90 Identities=27% Similarity=0.487 Sum_probs=76.3
Q ss_pred ceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCc
Q psy9102 111 FDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK 190 (277)
Q Consensus 111 ~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~ 190 (277)
|...+.+. ++++|+||++||+.|+.+ .+.+.++++. .+.+.++.+|++....+++.|++.. +|++++++++..
T Consensus 3 ~~~~~~~~-~~~ll~~~~~~C~~C~~~-~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~----~P~~~~~~~g~~ 75 (93)
T cd02947 3 FEELIKSA-KPVVVDFWAPWCGPCKAI-APVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRS----IPTFLFFKNGKE 75 (93)
T ss_pred hHHHHhcC-CcEEEEEECCCChhHHHh-hHHHHHHHHH-CCCceEEEEECCCChhHHHhcCccc----ccEEEEEECCEE
Confidence 34434334 899999999999999999 6899999888 5569999999999999999999998 999999887665
Q ss_pred eeeecCCCCHHHHHHHH
Q psy9102 191 KYAMKDEFSVENLESFL 207 (277)
Q Consensus 191 ~~~~~g~~~~~~l~~fi 207 (277)
...+.|..+.+.|.+||
T Consensus 76 ~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 76 VDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEecCCCHHHHHHHh
Confidence 67778888888988887
No 65
>KOG0912|consensus
Probab=99.47 E-value=1.9e-13 Score=111.45 Aligned_cols=98 Identities=22% Similarity=0.371 Sum_probs=81.9
Q ss_pred ccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcC-----CcceEEEecccccchhhhccCcccCCCCCCeEE
Q psy9102 109 KNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA-----DKFTFAISAKDDFQHELNEFGFDYVPSDKPLVF 183 (277)
Q Consensus 109 ~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~-----~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~ 183 (277)
.|++.. .+++..++|.|||.||+.++.+ .|.|++.|..|+ +++.++.|||+.+..++.+|.|.. |||+-
T Consensus 4 ~N~~~i-l~s~elvfv~FyAdWCrFSq~L-~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~K----yPTlK 77 (375)
T KOG0912|consen 4 ENIDSI-LDSNELVFVNFYADWCRFSQML-KPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINK----YPTLK 77 (375)
T ss_pred ccHHHh-hccceEEeeeeehhhchHHHHH-hHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcccc----Cceee
Confidence 445443 4557899999999999999998 699999988775 459999999999999999999998 99994
Q ss_pred -EEcCCCceeeecCCCCHHHHHHHHHHHhc
Q psy9102 184 -VRAEDGKKYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 184 -~~~~~~~~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
+.++.-....|.|.++.+.|.+||++.++
T Consensus 78 vfrnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 78 VFRNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred eeeccchhhhhhccchhHHHHHHHHHHHhc
Confidence 44433335578899999999999999876
No 66
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.46 E-value=2e-13 Score=108.38 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=83.6
Q ss_pred CCCCeEEeecccceeeeecCC--ccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCC
Q psy9102 99 NSGPVKVAVAKNFDEVVTNNE--KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVP 176 (277)
Q Consensus 99 ~~~~i~~~~~~~~~~~~~~~~--~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~ 176 (277)
..+.+..++..+|...+...+ .+|+|.||++||++|+.+ .+.|.+||.+|.. +.|+.||++.. ...|++..
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m-~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~-- 152 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLL-NQHLSELARKFPD-TKFVKIISTQC---IPNYPDKN-- 152 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHH-HHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCC--
Confidence 467899999999998776543 489999999999999999 7999999999975 99999998753 57899998
Q ss_pred CCCCeEEEEcCCCceeeecC-------CCCHHHHHHHHHH
Q psy9102 177 SDKPLVFVRAEDGKKYAMKD-------EFSVENLESFLTK 209 (277)
Q Consensus 177 ~~~P~i~~~~~~~~~~~~~g-------~~~~~~l~~fi~~ 209 (277)
+||+++|+++..+..+.| .++.+.|..++..
T Consensus 153 --lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 153 --LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred --CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999999987655545544 5677777777653
No 67
>KOG0908|consensus
Probab=99.45 E-value=2.8e-13 Score=107.61 Aligned_cols=98 Identities=19% Similarity=0.322 Sum_probs=84.4
Q ss_pred ccceeeee-cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcC
Q psy9102 109 KNFDEVVT-NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE 187 (277)
Q Consensus 109 ~~~~~~~~-~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~ 187 (277)
..|...+. ...+.++|.|++.||++|+.. .|.|..++.+|.+ ..|+.||+++-...+..+||.. .||+++|.+
T Consensus 10 ~df~~~ls~ag~k~v~Vdfta~wCGPCk~I-aP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~a----mPTFiff~n 83 (288)
T KOG0908|consen 10 SDFQRELSAAGGKLVVVDFTASWCGPCKRI-APIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNA----MPTFIFFRN 83 (288)
T ss_pred HHHHHhhhccCceEEEEEEEecccchHHhh-hhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCccc----CceEEEEec
Confidence 44544443 344789999999999999999 7999999999987 8999999999999999999998 999999997
Q ss_pred CCceeeecCCCCHHHHHHHHHHHhcC
Q psy9102 188 DGKKYAMKDEFSVENLESFLTKVVAG 213 (277)
Q Consensus 188 ~~~~~~~~g~~~~~~l~~fi~~~~~~ 213 (277)
+.++..+.| .++..|++.|.++++.
T Consensus 84 g~kid~~qG-Ad~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 84 GVKIDQIQG-ADASGLEEKVAKYAST 108 (288)
T ss_pred CeEeeeecC-CCHHHHHHHHHHHhcc
Confidence 777777776 8899999999998763
No 68
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.42 E-value=1.2e-12 Score=89.73 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=70.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHH
Q psy9102 122 VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVE 201 (277)
Q Consensus 122 ~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~ 201 (277)
.+..|+++||++|+.+ .+.+.+++++++..+.++.||+++++..++.||+.+ +|++++ + |+ .++.|..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~-~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~----vPt~~~-~--g~-~~~~G~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAA-KRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMA----VPAIVI-N--GD-VEFIGAPTKE 72 (82)
T ss_pred EEEEEECCCCcchHHH-HHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCcc----CCEEEE-C--CE-EEEecCCCHH
Confidence 4678999999999999 699999999998889999999999999999999998 999986 3 33 4678888999
Q ss_pred HHHHHHHHHh
Q psy9102 202 NLESFLTKVV 211 (277)
Q Consensus 202 ~l~~fi~~~~ 211 (277)
+|.+++++.+
T Consensus 73 ~l~~~l~~~~ 82 (82)
T TIGR00411 73 ELVEAIKKRL 82 (82)
T ss_pred HHHHHHHhhC
Confidence 9999988653
No 69
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.41 E-value=8.4e-13 Score=97.37 Aligned_cols=104 Identities=10% Similarity=0.088 Sum_probs=74.9
Q ss_pred CCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc-----------hhhhc
Q psy9102 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ-----------HELNE 169 (277)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~-----------~~~~~ 169 (277)
..+..++.+++.+.+ ++++.++|+|+++||++|+.+ .|.|.+++++ .++.+..||.+.+. .+.+.
T Consensus 6 ~~~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~-~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 6 KGLEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKF-SGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred ccceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHH-hHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 445566667777765 445789999999999999999 7999999998 34667777776432 33344
Q ss_pred cCcccCCCCCCeEEEEcCCCceeeecC-CCCHHHHHHHHH
Q psy9102 170 FGFDYVPSDKPLVFVRAEDGKKYAMKD-EFSVENLESFLT 208 (277)
Q Consensus 170 ~~i~~~~~~~P~i~~~~~~~~~~~~~g-~~~~~~l~~fi~ 208 (277)
|++...-.++||+++++.+....+..| ..+.++|.+|+.
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 543211123999999997766667777 567899998874
No 70
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.37 E-value=1.2e-12 Score=95.37 Aligned_cols=93 Identities=14% Similarity=0.304 Sum_probs=70.5
Q ss_pred ccceeeeecC-CccEEEEEec-------CCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc-------chhhhccCcc
Q psy9102 109 KNFDEVVTNN-EKDVLVEFYA-------PWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF-------QHELNEFGFD 173 (277)
Q Consensus 109 ~~~~~~~~~~-~~~~~v~F~~-------~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~-------~~~~~~~~i~ 173 (277)
++|.+.+.+. +++++|.||| +||++|+.+ .|.+.+++.++++.+.|+.||+++. ..+...++|.
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~-~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~ 88 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKA-EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT 88 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhh-chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc
Confidence 3455555433 5799999999 999999999 6999999999997799999999763 4788899998
Q ss_pred -cCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHH
Q psy9102 174 -YVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 174 -~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi 207 (277)
+ +||+++++.+++... ..=.+.+.+..|.
T Consensus 89 ~~----iPT~~~~~~~~~l~~-~~c~~~~~~~~~~ 118 (119)
T cd02952 89 TG----VPTLLRWKTPQRLVE-DECLQADLVEMFF 118 (119)
T ss_pred cC----CCEEEEEcCCceecc-hhhcCHHHHHHhh
Confidence 8 999999975543222 1224555665554
No 71
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.32 E-value=3.6e-12 Score=92.44 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=44.1
Q ss_pred CCCCeEecchhcHHHHh--hcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 228 NSGPVKVAVAKNFDEVV--TNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 228 ~~~~v~~l~~~~f~~~v--~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
..+.|..|+++||++.+ .+.++.++|+||||||++|+++.|.|+++|+.+
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~ 58 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKL 58 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 34668899999999874 567889999999999999999999999999864
No 72
>KOG0910|consensus
Probab=99.25 E-value=6.9e-12 Score=93.12 Aligned_cols=48 Identities=40% Similarity=0.723 Sum_probs=43.9
Q ss_pred CCeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 230 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 230 ~~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
..+..++...|++.|.+++.+|+|+|||+|||+|+.+.|++++++.+|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~ 90 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEY 90 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhh
Confidence 346678889999999999999999999999999999999999999875
No 73
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.23 E-value=1.8e-11 Score=89.67 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=61.5
Q ss_pred ecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc-hhhhccCcccCCCCCCeEEEEcCCCcee--
Q psy9102 116 TNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ-HELNEFGFDYVPSDKPLVFVRAEDGKKY-- 192 (277)
Q Consensus 116 ~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~-~~~~~~~i~~~~~~~P~i~~~~~~~~~~-- 192 (277)
...+++++|.||++||++|+.+ .+.+.+.+........|+.+|++... .....|++.+ ..+||+++++++|+..
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~-~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g--~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKAL-KPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDG--GYIPRILFLDPSGDVHPE 92 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHH-HHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCC--CccceEEEECCCCCCchh
Confidence 3567899999999999999999 68888876654444456666666554 3446777764 3399999998777643
Q ss_pred --eecCCCCHHHHHHHHHH
Q psy9102 193 --AMKDEFSVENLESFLTK 209 (277)
Q Consensus 193 --~~~g~~~~~~l~~fi~~ 209 (277)
...|..+.+....++..
T Consensus 93 ~~~~~~~~~~~~f~~~~~~ 111 (117)
T cd02959 93 IINKKGNPNYKYFYSSAAQ 111 (117)
T ss_pred hccCCCCccccccCCCHHH
Confidence 23344444444444433
No 74
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.23 E-value=1.8e-11 Score=87.93 Aligned_cols=47 Identities=36% Similarity=0.775 Sum_probs=43.2
Q ss_pred CeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 231 ~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.+..++.++|++.+.+++++++|.||||||++|+++.|.|+++++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~ 48 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARAL 48 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 46788999999999888889999999999999999999999999864
No 75
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.22 E-value=5.2e-11 Score=86.69 Aligned_cols=86 Identities=28% Similarity=0.536 Sum_probs=63.2
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHHH---HHHhhcCCcceEEEeccccc--------------------chhhhccCcc
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRIL---KVAKGFADKFTFAISAKDDF--------------------QHELNEFGFD 173 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~~---~la~~~~~~i~~~~vd~~~~--------------------~~~~~~~~i~ 173 (277)
..+++++++|+++||+.|+.+ .+.+. ++...+++++.++.++++.. ..+++.+||.
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKL-EKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHH-HHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCEEEEEEECCCCHHHHHH-HHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 456899999999999999998 46666 46667766688888887643 2477889999
Q ss_pred cCCCCCCeEEEEcCCCc-eeeecCCCCHHHHHHHH
Q psy9102 174 YVPSDKPLVFVRAEDGK-KYAMKDEFSVENLESFL 207 (277)
Q Consensus 174 ~~~~~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi 207 (277)
+ +||+++++++|+ ...+.|-.+.++|.+++
T Consensus 82 g----tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 G----TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp S----SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred c----cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 8 999999997776 55788999999998865
No 76
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.21 E-value=1.3e-10 Score=104.78 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=74.5
Q ss_pred eeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC-cceEEEec----------------------------ccc
Q psy9102 112 DEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD-KFTFAISA----------------------------KDD 162 (277)
Q Consensus 112 ~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd----------------------------~~~ 162 (277)
..+.++.+++++|+|||+||++|+.++ |.|.+++++++. .+.++.|. ++.
T Consensus 49 ~~v~lskGKpVvV~FWATWCppCk~em-P~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~ 127 (521)
T PRK14018 49 ASVYLKKDKPTLIKFWASWCPLCLSEL-GETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN 127 (521)
T ss_pred ceeeccCCCEEEEEEEcCCCHHHHHHH-HHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc
Confidence 344556789999999999999999995 999999999874 35555442 234
Q ss_pred cchhhhccCcccCCCCCCeEEEEcCCCc-eeeecCCCCHHHHHHHHHHH
Q psy9102 163 FQHELNEFGFDYVPSDKPLVFVRAEDGK-KYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 163 ~~~~~~~~~i~~~~~~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~ 210 (277)
+..+.+.|+|.+ +|++++++++|+ +..+.|..+.++|.++|+..
T Consensus 128 ~~~lak~fgV~g----iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 128 GGTLAQSLNISV----YPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred cHHHHHHcCCCC----cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 456778899988 999988877776 45778999999999999944
No 77
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.21 E-value=2.7e-11 Score=86.51 Aligned_cols=46 Identities=28% Similarity=0.647 Sum_probs=41.2
Q ss_pred CeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 231 ~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.+..|++++|++.+.+ ++.++|+||||||++|+++.|.|+++|+++
T Consensus 2 ~~~~l~~~~f~~~v~~-~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~ 47 (101)
T cd03003 2 EIVTLDRGDFDAAVNS-GEIWFVNFYSPRCSHCHDLAPTWREFAKEM 47 (101)
T ss_pred CeEEcCHhhHHHHhcC-CCeEEEEEECCCChHHHHhHHHHHHHHHHh
Confidence 3678899999999855 589999999999999999999999999874
No 78
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.17 E-value=4.6e-11 Score=85.63 Aligned_cols=47 Identities=74% Similarity=1.367 Sum_probs=43.4
Q ss_pred CeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 231 ~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+|..|++++|++.+.+.+++++|+||+|||++|+++.|.|+++++.+
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~ 47 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKL 47 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHh
Confidence 47889999999999888899999999999999999999999999764
No 79
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.16 E-value=7.6e-10 Score=92.50 Aligned_cols=187 Identities=17% Similarity=0.245 Sum_probs=123.6
Q ss_pred CcchhhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCC-C-CcccCCCCCCHHHHHHHHH
Q psy9102 2 AKTGTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED-G-KKYAMKDEFSVENLESFLT 79 (277)
Q Consensus 2 ~~~~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~-~-~~y~~~g~~~~~~i~~fi~ 79 (277)
|+.+.++.+++|.++|..|++.|.|+++.++.. ++++|++. .- +-+|.|-. . ...+ ..+.+.++|.+||+
T Consensus 173 Fk~~~s~~yk~FeeAAe~F~p~IkFfAtfd~~v---Ak~L~lK~---ne-v~fyepF~~~pi~ip-~~p~~e~e~~~fi~ 244 (383)
T PF01216_consen 173 FKSEDSEHYKEFEEAAEHFQPYIKFFATFDKKV---AKKLGLKL---NE-VDFYEPFMDEPITIP-GKPYTEEELVEFIE 244 (383)
T ss_dssp -SSTTSHHHHHHHHHHHHCTTTSEEEEE-SHHH---HHHHT-ST---T--EEEE-TTSSSEEEES-SSS--HHHHHHHHH
T ss_pred eCCCCcHHHHHHHHHHHhhcCceeEEEEecchh---hhhcCccc---cc-eeeeccccCCCccCC-CCCCCHHHHHHHHH
Confidence 345567799999999999999999999999999 99999984 44 77787733 3 4442 44578999999999
Q ss_pred HHhcCCCCccccCCCCCCCCCCCeEEeeccc-ceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc--ceEE
Q psy9102 80 KVVAGEVDPYIKSEPVPEDNSGPVKVAVAKN-FDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK--FTFA 156 (277)
Q Consensus 80 ~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~--i~~~ 156 (277)
.+..|.++. +. ..+ |+-.--+-+..++|.|.....+...+++ ..+.++|+...+. +.++
T Consensus 245 ~h~rptlrk------l~-----------~~~m~e~Wedd~~g~hIvaFaee~dpdG~efl-eilk~va~~nt~np~Lsiv 306 (383)
T PF01216_consen 245 EHKRPTLRK------LR-----------PEDMFETWEDDIDGIHIVAFAEEEDPDGFEFL-EILKQVARDNTDNPDLSIV 306 (383)
T ss_dssp HT-S-SEEE-------------------GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHH-HHHHHHHHHCTT-TT--EE
T ss_pred HhchhHhhh------CC-----------hhhhhhhhcccCCCceEEEEecCCCCchHHHH-HHHHHHHHhcCcCCceeEE
Confidence 999987666 43 223 2222233457789999988888888885 8999999987664 9999
Q ss_pred Eecccccchhh----hccCcccCCCCCCeEEEEcCC---CceeeecC---CCCHHHHHHHHHHHhcCCCCC
Q psy9102 157 ISAKDDFQHEL----NEFGFDYVPSDKPLVFVRAED---GKKYAMKD---EFSVENLESFLTKVVAGEVDP 217 (277)
Q Consensus 157 ~vd~~~~~~~~----~~~~i~~~~~~~P~i~~~~~~---~~~~~~~g---~~~~~~l~~fi~~~~~~~~~~ 217 (277)
+||-+..+-+. +.|||.- . -|.|-+.+-. +....+.+ ..+.+.|.+||++.++|++..
T Consensus 307 wIDPD~fPllv~yWE~tF~Idl--~-~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 307 WIDPDDFPLLVPYWEKTFGIDL--S-RPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp EE-GGG-HHHHHHHHHHHTT-T--T-S-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred EECCCCCchhHHHHHhhcCccc--c-CCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 99999887654 6689985 2 5999666633 32334432 347899999999999998654
No 80
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.16 E-value=1.7e-10 Score=77.70 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=57.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCC-CCHHH
Q psy9102 124 VEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDE-FSVEN 202 (277)
Q Consensus 124 v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~-~~~~~ 202 (277)
|.||++||++|+.+ .+.+.++++++..++.++.|| +...+..||+.+ +|++++ +|+.. +.|. .+.+.
T Consensus 3 i~~~a~~C~~C~~~-~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~----vPti~i---~G~~~-~~G~~~~~~~ 70 (76)
T TIGR00412 3 IQIYGTGCANCQMT-EKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTA----TPGVAV---DGELV-IMGKIPSKEE 70 (76)
T ss_pred EEEECCCCcCHHHH-HHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCc----CCEEEE---CCEEE-EEeccCCHHH
Confidence 67999999999999 699999999998888998888 234467899998 999988 34333 6674 45577
Q ss_pred HHHHH
Q psy9102 203 LESFL 207 (277)
Q Consensus 203 l~~fi 207 (277)
|.+++
T Consensus 71 l~~~l 75 (76)
T TIGR00412 71 IKEIL 75 (76)
T ss_pred HHHHh
Confidence 77765
No 81
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.15 E-value=6.2e-11 Score=85.81 Aligned_cols=46 Identities=52% Similarity=1.001 Sum_probs=42.7
Q ss_pred eEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 232 v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
|..++.++|++.+.+++++++|.||||||++|+++.|.|+++++.+
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~ 47 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKEL 47 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHh
Confidence 6689999999999888899999999999999999999999999764
No 82
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.15 E-value=7.2e-11 Score=86.19 Aligned_cols=47 Identities=36% Similarity=0.840 Sum_probs=43.4
Q ss_pred CeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 231 ~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++..+++++|++.+++++++++|.||||||++|+++.|.|++++..|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~ 48 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDL 48 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHH
Confidence 47789999999999888899999999999999999999999999753
No 83
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.15 E-value=1.9e-10 Score=106.20 Aligned_cols=98 Identities=15% Similarity=0.341 Sum_probs=77.2
Q ss_pred cccceeeee---cCCccEEEEEecCCChhhhhhhHHHH---HHHHhhcCCcceEEEeccccc----chhhhccCcccCCC
Q psy9102 108 AKNFDEVVT---NNEKDVLVEFYAPWCGHCTNYWRNRI---LKVAKGFADKFTFAISAKDDF----QHELNEFGFDYVPS 177 (277)
Q Consensus 108 ~~~~~~~~~---~~~~~~~v~F~~~~c~~c~~~~~~~~---~~la~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~~~ 177 (277)
.+++++.+. ..+++++|+||++||++|+.+ ++.. .++.+.+++ +.++.+|++++ .+++++|++.+
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~-e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g--- 534 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEF-EKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLG--- 534 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHH-HHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCC---
Confidence 344555443 346899999999999999998 4543 467777765 88999998854 46789999998
Q ss_pred CCCeEEEEcCCCce---eeecCCCCHHHHHHHHHHHh
Q psy9102 178 DKPLVFVRAEDGKK---YAMKDEFSVENLESFLTKVV 211 (277)
Q Consensus 178 ~~P~i~~~~~~~~~---~~~~g~~~~~~l~~fi~~~~ 211 (277)
+|++++++++|+. .++.|..+.+++.+++++..
T Consensus 535 -~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 535 -LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred -CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 9999999877654 57789999999999998753
No 84
>KOG1731|consensus
Probab=99.14 E-value=5.4e-11 Score=105.24 Aligned_cols=110 Identities=23% Similarity=0.361 Sum_probs=91.3
Q ss_pred CCCCCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcC---CcceEEEecccc--cchhhhccCc
Q psy9102 98 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA---DKFTFAISAKDD--FQHELNEFGF 172 (277)
Q Consensus 98 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~---~~i~~~~vd~~~--~~~~~~~~~i 172 (277)
+..+.|..++.++|...+..+.+..+|.||++||++|+.+ .|.|+++|+... .-+.++.|||.. |..+|..|+|
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~F-APtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V 114 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAF-APTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV 114 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhc-chHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC
Confidence 3458899999999999999998899999999999999999 799999998765 448899999974 5679999999
Q ss_pred ccCCCCCCeEEEEcCCCce----eeecCCCCHHHHHHHHHHHhc
Q psy9102 173 DYVPSDKPLVFVRAEDGKK----YAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 173 ~~~~~~~P~i~~~~~~~~~----~~~~g~~~~~~l~~fi~~~~~ 212 (277)
+. +|++.+++.+... ..+.|.....++.+++...+.
T Consensus 115 ~~----~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 115 SG----YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred CC----CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 98 9999999877443 233456667788888776654
No 85
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.14 E-value=1.6e-10 Score=85.09 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=66.2
Q ss_pred ecCCccEEEEEecCCChhhhhhhHHHHH--HHHhhcCCcceEEEecccccchhhh--------ccCcccCCCCCCeEEEE
Q psy9102 116 TNNEKDVLVEFYAPWCGHCTNYWRNRIL--KVAKGFADKFTFAISAKDDFQHELN--------EFGFDYVPSDKPLVFVR 185 (277)
Q Consensus 116 ~~~~~~~~v~F~~~~c~~c~~~~~~~~~--~la~~~~~~i~~~~vd~~~~~~~~~--------~~~i~~~~~~~P~i~~~ 185 (277)
...+++++|.|+++||+.|+.|-...+. ++++.+..++.++.+|.++.+.+.+ .||+.+ +|+++++
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G----~Pt~vfl 87 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG----WPLNVFL 87 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC----CCEEEEE
Confidence 4567999999999999999998322344 6777776679999999988776654 257777 9999999
Q ss_pred cCCCceeeec------CCCCHHHHHHHHHHH
Q psy9102 186 AEDGKKYAMK------DEFSVENLESFLTKV 210 (277)
Q Consensus 186 ~~~~~~~~~~------g~~~~~~l~~fi~~~ 210 (277)
+++|+...-. ...+...+.++++.+
T Consensus 88 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 88 TPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 9888754221 134445677776654
No 86
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.14 E-value=5.2e-10 Score=85.57 Aligned_cols=88 Identities=15% Similarity=0.260 Sum_probs=62.9
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccc----------cchhh-hcc---CcccCCCCCCeEEE
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDD----------FQHEL-NEF---GFDYVPSDKPLVFV 184 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~----------~~~~~-~~~---~i~~~~~~~P~i~~ 184 (277)
+...+|+||++||++|++. .|.+.+++++|+-.+..+.+|... ..... ..| ++.. +|+.++
T Consensus 50 ~~~~lvnFWAsWCppCr~e-~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~----iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQF-APVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV----TPATFL 124 (153)
T ss_pred CCCEEEEEECCCChhHHHH-HHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC----CCeEEE
Confidence 3567999999999999999 499999999985434444444221 01222 334 6666 999999
Q ss_pred EcCCCce-e-eecCCCCHHHHHHHHHHHh
Q psy9102 185 RAEDGKK-Y-AMKDEFSVENLESFLTKVV 211 (277)
Q Consensus 185 ~~~~~~~-~-~~~g~~~~~~l~~fi~~~~ 211 (277)
++++|.. + ...|..+.+++.+.+..++
T Consensus 125 ID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred EeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 9877653 3 4679999999988887653
No 87
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.12 E-value=2.3e-10 Score=82.91 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=80.9
Q ss_pred EeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhh---cCCcceEEEecccccchhhhccCcccCCCCCCe
Q psy9102 105 VAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKG---FADKFTFAISAKDDFQHELNEFGFDYVPSDKPL 181 (277)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~---~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~ 181 (277)
+++.+|+.. +.+++.+..++|+.+. .-... .+.+.++|++ +++++.|+.+|.+.....++.||++. ...|.
T Consensus 3 e~t~e~~~~-~~~~~~~~~~l~f~~~--~~~~~-~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~--~~~P~ 76 (111)
T cd03072 3 EITFENAEE-LTEEGLPFLILFHDKD--DLESL-KEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTP--ADLPV 76 (111)
T ss_pred ccccccHHH-HhcCCCCeEEEEecch--HHHHH-HHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCH--hHCCE
Confidence 445555543 3455566666666332 22333 6899999999 99999999999999888999999996 57999
Q ss_pred EEEEcCCC-ceee-ecCCCCHHHHHHHHHHHhcCC
Q psy9102 182 VFVRAEDG-KKYA-MKDEFSVENLESFLTKVVAGE 214 (277)
Q Consensus 182 i~~~~~~~-~~~~-~~g~~~~~~l~~fi~~~~~~~ 214 (277)
+++.+.++ .+|. +.+.++.+.|.+|++++++|+
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 98887554 5787 778999999999999999875
No 88
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.11 E-value=4.5e-10 Score=94.20 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=70.4
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccc---------cchhhhccCcccCCCCCCeEEEEcC-
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDD---------FQHELNEFGFDYVPSDKPLVFVRAE- 187 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~---------~~~~~~~~~i~~~~~~~P~i~~~~~- 187 (277)
.+++++|+||++||++|+.+ .+.+.+++++|.-.+..+.+|... +..+++.+||.. +|++++++.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~-~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~----vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQ-APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT----VPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHH-hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc----CCeEEEEECC
Confidence 35799999999999999999 599999999997445555555432 245778999988 999999887
Q ss_pred CCceee-ecCCCCHHHHHHHHHHHhc
Q psy9102 188 DGKKYA-MKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 188 ~~~~~~-~~g~~~~~~l~~fi~~~~~ 212 (277)
++.... ..|..+.++|.+.+.....
T Consensus 240 ~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 240 PNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 454443 3488999999999987754
No 89
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.11 E-value=1.3e-09 Score=81.24 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=70.2
Q ss_pred hhhhhHHHHHHHHhhcCCc-ceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceee-ecCCCCHHHHHHHHHHHh
Q psy9102 134 CTNYWRNRILKVAKGFADK-FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYA-MKDEFSVENLESFLTKVV 211 (277)
Q Consensus 134 c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~-~~g~~~~~~l~~fi~~~~ 211 (277)
+...+...+.++|++|+++ +.|+++|.++...+.+.||+.. .++|++++++..+.+|. +.|.++.++|.+|+++++
T Consensus 38 ~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~--~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 38 CRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG--FGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc--cCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 4434468999999999999 9999999999988999999975 56999988886544777 789999999999999999
Q ss_pred cCCCC
Q psy9102 212 AGEVD 216 (277)
Q Consensus 212 ~~~~~ 216 (277)
+|++.
T Consensus 116 ~Gkl~ 120 (130)
T cd02983 116 YGRGP 120 (130)
T ss_pred cCCcc
Confidence 99874
No 90
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.11 E-value=5.9e-08 Score=81.38 Aligned_cols=214 Identities=12% Similarity=0.167 Sum_probs=140.2
Q ss_pred HHHHHHHHhcC--CceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC-CcccCCCCCCHHHHHHHHHHHhcCCCC
Q psy9102 11 NRILKVAKGFA--DKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKDEFSVENLESFLTKVVAGEVD 87 (277)
Q Consensus 11 ~~f~~~A~~~~--~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~-~~y~~~g~~~~~~i~~fi~~~~~~~~~ 87 (277)
+.+-++|.|.- ..|.||.+|..+-.++++++|+... ++ +.+|+ ++. ..| +|.++.+.|..||.+....-+.
T Consensus 76 E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~--~S-iyVfk-d~~~IEy--dG~~saDtLVeFl~dl~edPVe 149 (383)
T PF01216_consen 76 ELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEE--GS-IYVFK-DGEVIEY--DGERSADTLVEFLLDLLEDPVE 149 (383)
T ss_dssp HHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--ST--TE-EEEEE-TTEEEEE---S--SHHHHHHHHHHHHSSSEE
T ss_pred HHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcccc--Cc-EEEEE-CCcEEEe--cCccCHHHHHHHHHHhcccchh
Confidence 33556666553 3699999999999999999999974 33 77777 333 889 9999999999999999876433
Q ss_pred ccccCCCCCCCCCCCeEEeecccceeeeec-CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchh
Q psy9102 88 PYIKSEPVPEDNSGPVKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHE 166 (277)
Q Consensus 88 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~ 166 (277)
. ++++.=...+.+ ...+.+|-|+.+..+. .+ ..|.++|..|...|.|..+= ++.+
T Consensus 150 i-----------------In~~~e~~~Fe~ied~~klIGyFk~~~s~--~y--k~FeeAAe~F~p~IkFfAtf---d~~v 205 (383)
T PF01216_consen 150 I-----------------INNKHELKAFERIEDDIKLIGYFKSEDSE--HY--KEFEEAAEHFQPYIKFFATF---DKKV 205 (383)
T ss_dssp E-----------------E-SHHHHHHHHH--SS-EEEEE-SSTTSH--HH--HHHHHHHHHCTTTSEEEEE----SHHH
T ss_pred h-----------------hcChhhhhhhhhcccceeEEEEeCCCCcH--HH--HHHHHHHHhhcCceeEEEEe---cchh
Confidence 3 333221111111 2246677766653222 22 57889999999998887644 5688
Q ss_pred hhccCcccCCCCCCeEEEEcCC-CceeeecC-CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhc-HHHH
Q psy9102 167 LNEFGFDYVPSDKPLVFVRAED-GKKYAMKD-EFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKN-FDEV 243 (277)
Q Consensus 167 ~~~~~i~~~~~~~P~i~~~~~~-~~~~~~~g-~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~-f~~~ 243 (277)
+++++++ .-.+-+|.+= .++....| +.+.++|.+||+++.. ++.++|..++ |+.+
T Consensus 206 Ak~L~lK-----~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r-----------------ptlrkl~~~~m~e~W 263 (383)
T PF01216_consen 206 AKKLGLK-----LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR-----------------PTLRKLRPEDMFETW 263 (383)
T ss_dssp HHHHT-S-----TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S------------------SEEE--GGGHHHHH
T ss_pred hhhcCcc-----ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhch-----------------hHhhhCChhhhhhhh
Confidence 8999996 5567666642 34555554 5678899999999865 6789999988 5666
Q ss_pred hhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 244 VTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 244 v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
-.+-+.-++|.|...--+.-.+|..++.++|+.
T Consensus 264 edd~~g~hIvaFaee~dpdG~efleilk~va~~ 296 (383)
T PF01216_consen 264 EDDIDGIHIVAFAEEEDPDGFEFLEILKQVARD 296 (383)
T ss_dssp HSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHH
T ss_pred cccCCCceEEEEecCCCCchHHHHHHHHHHHHh
Confidence 666677899999999999999999999999975
No 91
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.09 E-value=2e-10 Score=82.04 Aligned_cols=46 Identities=37% Similarity=0.854 Sum_probs=42.7
Q ss_pred eEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 232 v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
|..++.++|++.+.++++.++|+||++||++|+.+.|.|+++++.+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~ 46 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEY 46 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHT
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccc
Confidence 4678999999999887899999999999999999999999999865
No 92
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.09 E-value=1.6e-10 Score=83.52 Aligned_cols=45 Identities=33% Similarity=0.727 Sum_probs=40.2
Q ss_pred CeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 231 ~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
.|..+++++|++.+ +.++.++|.||||||++|+++.|.|+++++.
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~ 46 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAK 46 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHH
Confidence 47789999999987 5568999999999999999999999999874
No 93
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.09 E-value=1.7e-10 Score=83.11 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=35.8
Q ss_pred hhcHHHHhhc-CCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 237 AKNFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 237 ~~~f~~~v~~-~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.+.|++.+.. +++.++|.|||+||++|++|.|.|++||.++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~ 43 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDV 43 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 4678888764 6789999999999999999999999999864
No 94
>PHA02278 thioredoxin-like protein
Probab=99.08 E-value=1.5e-10 Score=82.59 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=34.3
Q ss_pred hhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 237 ~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
.+.|.+.+ +.++.++|+|||||||+|+.+.|.+++++++
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~ 42 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQES 42 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhh
Confidence 46788887 4578999999999999999999999999865
No 95
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.07 E-value=2e-10 Score=83.22 Aligned_cols=47 Identities=30% Similarity=0.679 Sum_probs=41.4
Q ss_pred CeEecchhcHHHHhh--cCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 231 PVKVAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 231 ~v~~l~~~~f~~~v~--~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.|..++.++|+.++. +.+++++|.||+|||++|+++.|.|+++++.+
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~ 50 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKL 50 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 367789999999984 45789999999999999999999999999754
No 96
>PHA02125 thioredoxin-like protein
Probab=99.07 E-value=7.3e-10 Score=74.51 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=52.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecC-CCCHH
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKD-EFSVE 201 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g-~~~~~ 201 (277)
+++||++||++|+.+ .+.|.+++ +.++.||+++...++..|+|.+ +||++ . +....++.| ..+..
T Consensus 2 iv~f~a~wC~~Ck~~-~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~----~PT~~--~-g~~~~~~~G~~~~~~ 67 (75)
T PHA02125 2 IYLFGAEWCANCKMV-KPMLANVE------YTYVDVDTDEGVELTAKHHIRS----LPTLV--N-TSTLDRFTGVPRNVA 67 (75)
T ss_pred EEEEECCCCHhHHHH-HHHHHHHh------heEEeeeCCCCHHHHHHcCCce----eCeEE--C-CEEEEEEeCCCCcHH
Confidence 689999999999998 68876653 4578899999999999999998 99987 2 222345666 23445
Q ss_pred HHHH
Q psy9102 202 NLES 205 (277)
Q Consensus 202 ~l~~ 205 (277)
+|++
T Consensus 68 ~l~~ 71 (75)
T PHA02125 68 ELKE 71 (75)
T ss_pred HHHH
Confidence 5554
No 97
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.06 E-value=4.1e-10 Score=85.94 Aligned_cols=57 Identities=25% Similarity=0.510 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCeEecchhcHHHHhhc-CCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 220 KSEPVPEDNSGPVKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 220 ks~~~p~~~~~~v~~l~~~~f~~~v~~-~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.++|.+.. ...+..++.++|++.+.. .++.++|+||||||++|+++.|.|+++++++
T Consensus 19 ~~~~~~~~-~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~ 76 (152)
T cd02962 19 APQPLYMG-PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKY 76 (152)
T ss_pred hCCCccCC-CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHc
Confidence 34555443 356788999999998854 4578999999999999999999999999764
No 98
>KOG0912|consensus
Probab=99.06 E-value=6.6e-09 Score=85.30 Aligned_cols=203 Identities=14% Similarity=0.179 Sum_probs=138.6
Q ss_pred hhHHHHHHHHHHHhcC-----CceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC--CcccCCCCCCHHHHHHHH
Q psy9102 6 TNYWRNRILKVAKGFA-----DKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG--KKYAMKDEFSVENLESFL 78 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~-----~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~--~~y~~~g~~~~~~i~~fi 78 (277)
++-+.+.|.++|..++ +++.+|.+||+....++.+|.|..| |+ +.+++++.= ..| .|.++++.|.+||
T Consensus 28 Sq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~Ky--PT-lKvfrnG~~~~rEY--Rg~RsVeaL~efi 102 (375)
T KOG0912|consen 28 SQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKY--PT-LKVFRNGEMMKREY--RGQRSVEALIEFI 102 (375)
T ss_pred HHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccC--ce-eeeeeccchhhhhh--ccchhHHHHHHHH
Confidence 3667889999998775 5689999999999999999999965 44 778886432 689 9999999999999
Q ss_pred HHHhcCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEE-
Q psy9102 79 TKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAI- 157 (277)
Q Consensus 79 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~- 157 (277)
+..+...+.+ +..- +++..+...+++.++.+|-....+.- ..+.++|.-++++..|..
T Consensus 103 ~kq~s~~i~E------f~sl----------~~l~n~~~p~K~~vIgyF~~kdspey-----~~~~kva~~lr~dc~f~V~ 161 (375)
T KOG0912|consen 103 EKQLSDPINE------FESL----------DQLQNLDIPSKRTVIGYFPSKDSPEY-----DNLRKVASLLRDDCVFLVG 161 (375)
T ss_pred HHHhccHHHH------HHhH----------HHHHhhhccccceEEEEeccCCCchH-----HHHHHHHHHHhhccEEEee
Confidence 9988776555 2110 11222222344566666765555543 467789999998755532
Q ss_pred -ecccccchhhhccCcccCCCCCCeEEEEcCCCc-e-eeecCCC-CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeE
Q psy9102 158 -SAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK-K-YAMKDEF-SVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVK 233 (277)
Q Consensus 158 -vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~-~-~~~~g~~-~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~ 233 (277)
-|... . .+. ++.+ +++++++.. . ..|.|.+ +.+.+.+||.+-.- +-|+
T Consensus 162 ~gD~~~------~--~~~--~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcv-----------------pLVR 213 (375)
T KOG0912|consen 162 FGDLLK------P--HEP--PGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCV-----------------PLVR 213 (375)
T ss_pred cccccc------C--CCC--CCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcch-----------------hhhh
Confidence 22211 1 111 2244 344454432 2 2577855 57899999987542 4588
Q ss_pred ecchhcHHHHhhcCCCcEEEEEECCCCHHH
Q psy9102 234 VAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 263 (277)
Q Consensus 234 ~l~~~~f~~~v~~~~~~~lV~f~apwC~~c 263 (277)
++|-+|-+++..+ +.+.+|.|+.+----.
T Consensus 214 EiTFeN~EELtEE-GlPflILf~~kdD~~s 242 (375)
T KOG0912|consen 214 EITFENAEELTEE-GLPFLILFRKKDDKES 242 (375)
T ss_pred hhhhccHHHHhhc-CCceEEEEecCCcccH
Confidence 9999999999866 6899999998765443
No 99
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.05 E-value=2.8e-10 Score=81.57 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=36.8
Q ss_pred chhcHHHHhhcC-CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 236 VAKNFDEVVTNN-EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 236 ~~~~f~~~v~~~-~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.++|++.+.+. ++.++|.|||+||++|+++.|.|+++++++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~ 44 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC 44 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC
Confidence 357788888654 789999999999999999999999999875
No 100
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.04 E-value=3.7e-10 Score=80.59 Aligned_cols=43 Identities=35% Similarity=0.780 Sum_probs=37.6
Q ss_pred CeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 231 ~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
.|..+++++|++.+.. .++|.||||||++|+++.|.|+++++.
T Consensus 2 ~v~~l~~~~f~~~~~~---~~lv~f~a~wC~~C~~~~p~~~~l~~~ 44 (101)
T cd02994 2 NVVELTDSNWTLVLEG---EWMIEFYAPWCPACQQLQPEWEEFADW 44 (101)
T ss_pred ceEEcChhhHHHHhCC---CEEEEEECCCCHHHHHHhHHHHHHHHh
Confidence 4678999999987743 389999999999999999999999875
No 101
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.04 E-value=9.1e-10 Score=83.31 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=55.4
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC--------cceEEEecccccc-------------------------
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD--------KFTFAISAKDDFQ------------------------- 164 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~--------~i~~~~vd~~~~~------------------------- 164 (277)
.+++++|+|||+||++|++.+ |.|.++.+++++ .+.++.|+.++..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~-P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFA-PKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred CCCEEEEEEECCCChhHHHHH-HHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 358999999999999999995 999988776643 3677777765321
Q ss_pred hhhhccCcccCCCCCCeEEEEcCCCceeeecC
Q psy9102 165 HELNEFGFDYVPSDKPLVFVRAEDGKKYAMKD 196 (277)
Q Consensus 165 ~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g 196 (277)
.+...|++.+ +|+.++++++|++..-.|
T Consensus 103 ~l~~~y~v~~----iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 103 ELEAQFSVEE----LPTVVVLKPDGDVLAANA 130 (146)
T ss_pred HHHHHcCCCC----CCEEEEECCCCcEEeeCh
Confidence 2445677766 999999998887665443
No 102
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.04 E-value=2.3e-09 Score=84.26 Aligned_cols=88 Identities=23% Similarity=0.502 Sum_probs=72.5
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc----------------------cchhhhccCccc
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD----------------------FQHELNEFGFDY 174 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~----------------------~~~~~~~~~i~~ 174 (277)
.+++++|+||++||++|+.. .+.+.++++++++. +.++.|+++. ...+.+.||+..
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~-~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKE-MPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHH-HHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 45789999999999999998 58999999999865 7777777642 345678899987
Q ss_pred CCCCCCeEEEEcCCCcee-eecCCCCHHHHHHHHHHH
Q psy9102 175 VPSDKPLVFVRAEDGKKY-AMKDEFSVENLESFLTKV 210 (277)
Q Consensus 175 ~~~~~P~i~~~~~~~~~~-~~~g~~~~~~l~~fi~~~ 210 (277)
+|++++++.+|+.. .+.|..+.+++.++++++
T Consensus 139 ----~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 139 ----LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred ----cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99999888787754 668899999999998864
No 103
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.03 E-value=2.2e-09 Score=84.44 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=66.1
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccc-----------------------ccchhhhccCccc
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKD-----------------------DFQHELNEFGFDY 174 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~-----------------------~~~~~~~~~~i~~ 174 (277)
.+++++|+||++||++|+.+ .+.+.+++++ .+.++.|+.+ ....+.+.|++.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~-~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAE-HPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHH-HHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 46899999999999999998 4888887654 2445544432 2234456678876
Q ss_pred CCCCCCeEEEEcCCCc-eeeecCCCCHHHHHHHHHHHhc
Q psy9102 175 VPSDKPLVFVRAEDGK-KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 175 ~~~~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
+|+.++++.+|+ .+.+.|..+.+++.+++++++.
T Consensus 138 ----~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 138 ----APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred ----CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 998888877776 5677899999999999998874
No 104
>PRK09381 trxA thioredoxin; Provisional
Probab=99.03 E-value=5.2e-10 Score=81.01 Aligned_cols=48 Identities=29% Similarity=0.746 Sum_probs=43.4
Q ss_pred CCeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 230 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 230 ~~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
..|..+++++|++.+.+.++.++|+||+|||++|+++.|.|+++++.+
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~ 50 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY 50 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 457788999999888787899999999999999999999999999864
No 105
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.02 E-value=2.7e-09 Score=84.84 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=66.7
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc-----------------------hhhhccCccc
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ-----------------------HELNEFGFDY 174 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~-----------------------~~~~~~~i~~ 174 (277)
.+++++|+||++||++|++.+ +.+.+++++ + +.++.|+.++.. .+...||+.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~-p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEH-QYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHH-HHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 568999999999999999984 888888653 3 666666643321 1234577776
Q ss_pred CCCCCCeEEEEcCCCc-eeeecCCCCHHHHHHHHHHHhc
Q psy9102 175 VPSDKPLVFVRAEDGK-KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 175 ~~~~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
+|+.++++++|+ .+.+.|..+.+.+...++.++.
T Consensus 143 ----~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 143 ----APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred ----CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 999888887776 5677899999999999998875
No 106
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.01 E-value=1.8e-09 Score=80.37 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=59.5
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecc-----------------------cccchhhhccCcccC
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAK-----------------------DDFQHELNEFGFDYV 175 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~-----------------------~~~~~~~~~~~i~~~ 175 (277)
+++++|+||++||++|+.+ .+.+.++++.+. +.++.|+. +....+++.|++..
T Consensus 25 gk~vvv~F~a~~C~~C~~~-~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~- 100 (127)
T cd03010 25 GKPYLLNVWASWCAPCREE-HPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG- 100 (127)
T ss_pred CCEEEEEEEcCcCHHHHHH-HHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC-
Confidence 5799999999999999998 589999988863 55554442 33455677789987
Q ss_pred CCCCCeEEEEcCCCc-eeeecCCCCHHHH
Q psy9102 176 PSDKPLVFVRAEDGK-KYAMKDEFSVENL 203 (277)
Q Consensus 176 ~~~~P~i~~~~~~~~-~~~~~g~~~~~~l 203 (277)
+|+.++++++|+ ...+.|.++.+.|
T Consensus 101 ---~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 101 ---VPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred ---CCeEEEECCCceEEEEEeccCChHhc
Confidence 998888877776 5677788876654
No 107
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.01 E-value=5.6e-10 Score=90.56 Aligned_cols=49 Identities=31% Similarity=0.801 Sum_probs=43.3
Q ss_pred CCCeEecchhcHHHHhhcC----CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 229 SGPVKVAVAKNFDEVVTNN----EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 229 ~~~v~~l~~~~f~~~v~~~----~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
...+..+++++|++.++.+ +++++|+||||||++|+++.|.|+++++++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~ 81 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKAL 81 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHc
Confidence 3568899999999998653 579999999999999999999999999864
No 108
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.01 E-value=1.4e-09 Score=76.70 Aligned_cols=67 Identities=27% Similarity=0.553 Sum_probs=53.1
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcC--CcceEEEeccccc-------------------------chhhhccC
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA--DKFTFAISAKDDF-------------------------QHELNEFG 171 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~--~~i~~~~vd~~~~-------------------------~~~~~~~~ 171 (277)
+++++|+||++||++|+.. .+.+.++.++|+ +.+.++.|..++. ..+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~-~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKE-LPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHH-HHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHH-HHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 5789999999999999999 599999999999 5688887777642 23567788
Q ss_pred cccCCCCCCeEEEEcCCCc
Q psy9102 172 FDYVPSDKPLVFVRAEDGK 190 (277)
Q Consensus 172 i~~~~~~~P~i~~~~~~~~ 190 (277)
+.. +|++++++++|+
T Consensus 80 i~~----iP~~~lld~~G~ 94 (95)
T PF13905_consen 80 ING----IPTLVLLDPDGK 94 (95)
T ss_dssp -TS----SSEEEEEETTSB
T ss_pred CCc----CCEEEEECCCCC
Confidence 887 999999988775
No 109
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.00 E-value=5.8e-10 Score=81.33 Aligned_cols=48 Identities=38% Similarity=0.528 Sum_probs=42.8
Q ss_pred CCeEecchhcHHHHhhcCC--CcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 230 GPVKVAVAKNFDEVVTNNE--KDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 230 ~~v~~l~~~~f~~~v~~~~--~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.+..++.++|.+.+.+.+ +.++|.||+|||++|+++.|.|+++|.+|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~ 53 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKY 53 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC
Confidence 5677888999999997763 89999999999999999999999999875
No 110
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.00 E-value=7.3e-10 Score=79.25 Aligned_cols=43 Identities=21% Similarity=0.716 Sum_probs=37.4
Q ss_pred ecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 234 VAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 234 ~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
..+.++|++.+. ++++++|+||||||++|+++.|.+++++.++
T Consensus 4 i~~~~~~~~~i~-~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~ 46 (102)
T cd02948 4 INNQEEWEELLS-NKGLTVVDVYQEWCGPCKAVVSLFKKIKNEL 46 (102)
T ss_pred ccCHHHHHHHHc-cCCeEEEEEECCcCHhHHHHhHHHHHHHHHc
Confidence 356788999875 5789999999999999999999999998764
No 111
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.00 E-value=5.9e-10 Score=79.36 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=33.5
Q ss_pred hcHHHHhh-cCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 238 KNFDEVVT-NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 238 ~~f~~~v~-~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.++.+++. ..++.++|.||||||++|+++.|.|++++++|
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~ 47 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMF 47 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh
Confidence 44555553 56788999999999999999999999999864
No 112
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.00 E-value=8.6e-10 Score=78.86 Aligned_cols=46 Identities=46% Similarity=0.902 Sum_probs=41.9
Q ss_pred eEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 232 v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
|..+++++|++.+.+.++.++|.||+|||++|+++.|.|.++++.+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~ 47 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKAL 47 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 5678999999999887888999999999999999999999998764
No 113
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.00 E-value=1.1e-09 Score=71.94 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=49.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~ 184 (277)
++.|+++||++|+.+ .+.+.+++..+. .+.+..+|+++++++...+|+.+ +|++++
T Consensus 3 v~~f~~~~C~~C~~~-~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~----vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDA-VQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMS----VPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHH-HHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcc----cCEEEE
Confidence 678999999999999 689999987754 49999999999999999999988 999977
No 114
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.00 E-value=5.6e-09 Score=77.78 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHHHhcCCc-eEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCCCccc-CCCCCCHHHHHHHHHHHh
Q psy9102 5 GTNYWRNRILKVAKGFADK-FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYA-MKDEFSVENLESFLTKVV 82 (277)
Q Consensus 5 ~~~~~~~~f~~~A~~~~~~-~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~~~y~-~~g~~~~~~i~~fi~~~~ 82 (277)
+.+++.+.|.++|++++++ +.|+++|.++...+.+.|||++. .+|++++.+.++.+|. +.|+++.++|.+|+.+++
T Consensus 38 ~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~--~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 38 CRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGF--GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCcc--CCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 5588999999999999999 99999999999889999999865 6787766653323675 689999999999999999
Q ss_pred cCCCCc
Q psy9102 83 AGEVDP 88 (277)
Q Consensus 83 ~~~~~~ 88 (277)
.+++..
T Consensus 116 ~Gkl~~ 121 (130)
T cd02983 116 YGRGPT 121 (130)
T ss_pred cCCccc
Confidence 998755
No 115
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.99 E-value=3.7e-09 Score=76.45 Aligned_cols=78 Identities=55% Similarity=1.039 Sum_probs=66.4
Q ss_pred chhhHHHHHHHHHHHhcC-CceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCCCcccCCCCC-CHHHHHHHHHHH
Q psy9102 4 TGTNYWRNRILKVAKGFA-DKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEF-SVENLESFLTKV 81 (277)
Q Consensus 4 ~~~~~~~~~f~~~A~~~~-~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~~~y~~~g~~-~~~~i~~fi~~~ 81 (277)
++.++|.+.|.++|+.+| +++.|+.+|..+....++.||++......|++++.+.++.+|.+.+++ +.++|.+|++++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 456899999999999999 799999999999888899999997410279888886444788878889 999999999876
No 116
>KOG0907|consensus
Probab=98.99 E-value=5.2e-10 Score=79.92 Aligned_cols=37 Identities=41% Similarity=0.887 Sum_probs=32.0
Q ss_pred HHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 241 DEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 241 ~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
......+++.++|+|||+|||+|+.+.|.+++||.+|
T Consensus 14 ~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y 50 (106)
T KOG0907|consen 14 LSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKY 50 (106)
T ss_pred HHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHC
Confidence 3444555799999999999999999999999999886
No 117
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.99 E-value=2.8e-09 Score=77.19 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHHHHh---cCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC-Cccc-CCCCCCHHHHHHH
Q psy9102 3 KTGTNYWRNRILKVAKG---FADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYA-MKDEFSVENLESF 77 (277)
Q Consensus 3 ~~~~~~~~~~f~~~A~~---~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~-~~y~-~~g~~~~~~i~~f 77 (277)
+++.+++.+.|.++|++ +++++.|+.+|.++....++.+|+++. +.|++++.+.++ .+|. +.+.++.++|.+|
T Consensus 26 ~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~--~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~F 103 (111)
T cd03072 26 KDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPA--DLPVIAIDSFRHMYLFPDFEDVYVPGKLKQF 103 (111)
T ss_pred chHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHh--HCCEEEEEcchhcCcCCCCccccCHHHHHHH
Confidence 45678999999999999 999999999999999889999999975 589888887555 7887 6788999999999
Q ss_pred HHHHhcCC
Q psy9102 78 LTKVVAGE 85 (277)
Q Consensus 78 i~~~~~~~ 85 (277)
++++..++
T Consensus 104 v~~~~~Gk 111 (111)
T cd03072 104 VLDLHSGK 111 (111)
T ss_pred HHHHhcCC
Confidence 99998763
No 118
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.98 E-value=1.8e-09 Score=80.82 Aligned_cols=70 Identities=19% Similarity=0.390 Sum_probs=53.9
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC---cceEEEeccccc------------------------chhhhcc
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD---KFTFAISAKDDF------------------------QHELNEF 170 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~---~i~~~~vd~~~~------------------------~~~~~~~ 170 (277)
.+++++|+||++||++|+.+ .+.+.++.+++++ .+.++.|+.+.. ..+++.|
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~-~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAF-TPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred CCcEEEEEEECCCChHHHHH-hHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 35799999999999999998 4899998888864 355554554422 2456789
Q ss_pred CcccCCCCCCeEEEEcCCCcee
Q psy9102 171 GFDYVPSDKPLVFVRAEDGKKY 192 (277)
Q Consensus 171 ~i~~~~~~~P~i~~~~~~~~~~ 192 (277)
|+.. +|++++++++|+..
T Consensus 96 ~v~~----~P~~~lid~~G~i~ 113 (131)
T cd03009 96 KIEG----IPTLIILDADGEVV 113 (131)
T ss_pred CCCC----CCEEEEECCCCCEE
Confidence 9988 99999999888654
No 119
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.98 E-value=3e-09 Score=77.71 Aligned_cols=92 Identities=18% Similarity=0.118 Sum_probs=73.4
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHHH--HHHhhcCCcceEEEecccc--cchhhhccCcccCCCCCCeEEEEcC-CCc-
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRIL--KVAKGFADKFTFAISAKDD--FQHELNEFGFDYVPSDKPLVFVRAE-DGK- 190 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~~--~la~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~~~~~P~i~~~~~-~~~- 190 (277)
..+++++|+|+++||+.|+.+-+..|. ++.+.++.++.+..+|.+. ...++..|++.+ +|+++++++ +|+
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~----~P~~~~i~~~~g~~ 90 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDK----YPHIAIIDPRTGEV 90 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccC----CCeEEEEeCccCcE
Confidence 456899999999999999998434454 5777777777788888763 456788899988 999988887 565
Q ss_pred eeeecCCCCHHHHHHHHHHHhc
Q psy9102 191 KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 191 ~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
..+..|..+++.+..-+++...
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHHh
Confidence 5678899999999998887754
No 120
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.97 E-value=2.2e-09 Score=80.50 Aligned_cols=72 Identities=19% Similarity=0.400 Sum_probs=54.9
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc---ceEEEecccccc-------------------------hhhhc
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK---FTFAISAKDDFQ-------------------------HELNE 169 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~---i~~~~vd~~~~~-------------------------~~~~~ 169 (277)
.++.++|.||++||++|+.++ +.+.+++++++++ +.++.|+.+... .+.+.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~-p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFT-PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred CCCEEEEEEECCCCchHHHHH-HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 458999999999999999984 8999998888753 556555554321 23456
Q ss_pred cCcccCCCCCCeEEEEcCCCceeee
Q psy9102 170 FGFDYVPSDKPLVFVRAEDGKKYAM 194 (277)
Q Consensus 170 ~~i~~~~~~~P~i~~~~~~~~~~~~ 194 (277)
|++.+ +|++++++++|+....
T Consensus 95 ~~v~~----iPt~~lid~~G~iv~~ 115 (132)
T cd02964 95 FKVEG----IPTLVVLKPDGDVVTT 115 (132)
T ss_pred cCCCC----CCEEEEECCCCCEEch
Confidence 88987 9999999988865543
No 121
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.96 E-value=1.1e-09 Score=78.09 Aligned_cols=44 Identities=41% Similarity=0.970 Sum_probs=38.9
Q ss_pred eEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 232 v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+..+++++|++.+.++ .++|.|||+||++|+++.|.|+++++++
T Consensus 2 ~~~l~~~~f~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~~~~~~ 45 (102)
T cd03005 2 VLELTEDNFDHHIAEG--NHFVKFFAPWCGHCKRLAPTWEQLAKKF 45 (102)
T ss_pred eeECCHHHHHHHhhcC--CEEEEEECCCCHHHHHhCHHHHHHHHHH
Confidence 5678999999999664 4999999999999999999999998763
No 122
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.3e-10 Score=90.63 Aligned_cols=48 Identities=42% Similarity=0.840 Sum_probs=41.7
Q ss_pred CCeEecchhcHHHHhhc-C-CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 230 GPVKVAVAKNFDEVVTN-N-EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 230 ~~v~~l~~~~f~~~v~~-~-~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
..|..+|..||++.|.. + .++|+|+||+|||++|+++.|.+++|+.+|
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~ 72 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEY 72 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHh
Confidence 34889999999988743 3 359999999999999999999999999865
No 123
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.94 E-value=4.9e-09 Score=75.80 Aligned_cols=72 Identities=56% Similarity=1.038 Sum_probs=63.7
Q ss_pred hHHHHHHHHhhcC-CcceEEEecccccchhhhccCcccCCCC--CCeEEEEcCCCceeeecCCC-CHHHHHHHHHHHh
Q psy9102 138 WRNRILKVAKGFA-DKFTFAISAKDDFQHELNEFGFDYVPSD--KPLVFVRAEDGKKYAMKDEF-SVENLESFLTKVV 211 (277)
Q Consensus 138 ~~~~~~~la~~~~-~~i~~~~vd~~~~~~~~~~~~i~~~~~~--~P~i~~~~~~~~~~~~~g~~-~~~~l~~fi~~~~ 211 (277)
|.+.+.++|++|+ +++.|+.+|.++....++.||++. .+ .|++++++.++++|++.+.. +.++|.+|+++++
T Consensus 36 ~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~--~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 36 WRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDF--SGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred HHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCc--ccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence 4689999999999 799999999999888999999996 56 99999888656788888889 9999999999863
No 124
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.93 E-value=1.1e-08 Score=100.68 Aligned_cols=90 Identities=20% Similarity=0.297 Sum_probs=72.3
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEec-----c----------------------cccchhhhc
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISA-----K----------------------DDFQHELNE 169 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd-----~----------------------~~~~~~~~~ 169 (277)
.+++++|+|||+||++|+.. .|.|.+++++|+++ +.++.|. . +....+.+.
T Consensus 419 kGK~vll~FWAsWC~pC~~e-~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHV-LPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhH-hHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 46899999999999999998 59999999999876 6666663 1 112345577
Q ss_pred cCcccCCCCCCeEEEEcCCCc-eeeecCCCCHHHHHHHHHHHhc
Q psy9102 170 FGFDYVPSDKPLVFVRAEDGK-KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 170 ~~i~~~~~~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
|++.+ +|++++++++|+ ..++.|....+.|.++++..+.
T Consensus 498 ~~V~~----iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSS----WPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCc----cceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 88887 999999987776 4567898999999999988764
No 125
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.92 E-value=1.6e-09 Score=76.48 Aligned_cols=40 Identities=33% Similarity=0.625 Sum_probs=35.0
Q ss_pred hcHHHHhhcC-CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 238 KNFDEVVTNN-EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 238 ~~f~~~v~~~-~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++|++.+.++ ++.++|.||||||++|+++.|.|++++..+
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~ 41 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEY 41 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHh
Confidence 4688888655 689999999999999999999999998764
No 126
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.92 E-value=1.3e-09 Score=79.12 Aligned_cols=44 Identities=20% Similarity=0.515 Sum_probs=37.3
Q ss_pred ecchhcHHHHhh--cCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 234 VAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 234 ~l~~~~f~~~v~--~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.++.++|++.+. +.+++++|.||||||++|+++.|.|+++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~ 53 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQEL 53 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHH
Confidence 457788987653 35789999999999999999999999998864
No 127
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.91 E-value=2.3e-09 Score=76.79 Aligned_cols=46 Identities=57% Similarity=1.075 Sum_probs=41.4
Q ss_pred eEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 232 v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+..+++++|++.+.+.++.++|.||++||++|+++.|.|+++++.+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~ 47 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVF 47 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHh
Confidence 4578899999998887789999999999999999999999999763
No 128
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.89 E-value=9.1e-09 Score=76.05 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=61.1
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecc---------------------cccchhhhccCcccCCC
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAK---------------------DDFQHELNEFGFDYVPS 177 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~---------------------~~~~~~~~~~~i~~~~~ 177 (277)
+++++|.||++||++|+.+ .+.+.++++++. +..+.+|- +.+..+++.|++.+
T Consensus 20 ~k~~vl~F~~~~C~~C~~~-~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~--- 93 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFT-SPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV--- 93 (123)
T ss_pred CCEEEEEEECCcChhhhhh-ChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc---
Confidence 4799999999999999999 488888887743 22222221 23456888999988
Q ss_pred CCCeEEEEcCCCceeeecCCCCHHHHHH
Q psy9102 178 DKPLVFVRAEDGKKYAMKDEFSVENLES 205 (277)
Q Consensus 178 ~~P~i~~~~~~~~~~~~~g~~~~~~l~~ 205 (277)
+|++++++++|..+...|..+.++|.+
T Consensus 94 -~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 94 -TPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred -ccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 999999987776667888888888865
No 129
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.88 E-value=2.9e-09 Score=79.77 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=36.8
Q ss_pred chhcHHHHhh-cCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 236 VAKNFDEVVT-NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 236 ~~~~f~~~v~-~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.+.|++.+. ..++.++|.|||+||++|+++.|.++++|+++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~ 52 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETI 52 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 4688888886 45789999999999999999999999999864
No 130
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.88 E-value=1.9e-08 Score=78.50 Aligned_cols=85 Identities=13% Similarity=0.190 Sum_probs=63.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc-------------chhhhccCcccCCCCCCeEEEEcCCC
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF-------------QHELNEFGFDYVPSDKPLVFVRAEDG 189 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~-------------~~~~~~~~i~~~~~~~P~i~~~~~~~ 189 (277)
+|+||++||++|++. .+.+.+++++|+ +.++.|+.+.. ..+...||+.. ..+|+.++++.+|
T Consensus 73 lV~FwaswCp~C~~e-~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~--~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQF-DPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIP--VATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHH-HHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCC--CCCCeEEEEeCCC
Confidence 778999999999999 599999999985 44444444322 12345677410 2399999999888
Q ss_pred ce-e-eecCCCCHHHHHHHHHHHhc
Q psy9102 190 KK-Y-AMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 190 ~~-~-~~~g~~~~~~l~~fi~~~~~ 212 (277)
+. + .+.|..+.++|.+.+...+.
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHh
Confidence 76 3 47899999999999988875
No 131
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.87 E-value=1.2e-08 Score=73.74 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=60.1
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcC-CcceEEEeccccc-----------------------chhhhccCccc
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA-DKFTFAISAKDDF-----------------------QHELNEFGFDY 174 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~-~~i~~~~vd~~~~-----------------------~~~~~~~~i~~ 174 (277)
+++++|.||++||+.|+.. .+.+.++.+++. ..+.++.|+++.. ..+.+.|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAE-MPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHH-hHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 5799999999999999998 589999999996 3488888888775 66788899987
Q ss_pred CCCCCCeEEEEcCCCce-eeecC
Q psy9102 175 VPSDKPLVFVRAEDGKK-YAMKD 196 (277)
Q Consensus 175 ~~~~~P~i~~~~~~~~~-~~~~g 196 (277)
+|++++++++|+. +.+.|
T Consensus 98 ----~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 ----LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ----cceEEEECCCCcEEEEecC
Confidence 9999999877753 44443
No 132
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.87 E-value=3.7e-09 Score=94.23 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=43.9
Q ss_pred CCCeEecchhcHHHHhh--cCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 229 SGPVKVAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 229 ~~~v~~l~~~~f~~~v~--~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+..|..|+.+||+..+. +.++.+||+||||||++|++|.|.|+++|++|
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~ 400 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKL 400 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHh
Confidence 45788999999999984 56789999999999999999999999999864
No 133
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.84 E-value=4.6e-09 Score=75.15 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=34.7
Q ss_pred hcHHHHhhcC-CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 238 KNFDEVVTNN-EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 238 ~~f~~~v~~~-~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.|++.+.+. ++.++|.|+|+||++|++|.|.++++|.+|
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~ 43 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDL 43 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHc
Confidence 5677777544 799999999999999999999999999864
No 134
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.84 E-value=7.1e-08 Score=89.49 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEc--C-CC-CcccCCCCCCHHHHHHHHHHHh
Q psy9102 7 NYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRA--E-DG-KKYAMKDEFSVENLESFLTKVV 82 (277)
Q Consensus 7 ~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~--~-~~-~~y~~~g~~~~~~i~~fi~~~~ 82 (277)
.+..+.++++| ++.++|.+-..+..+...+.+.|||. ..|.+.+.. + .. .+| .|-..-.++..||...+
T Consensus 382 ~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~----~~P~~~i~~~~~~~~~i~f--~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 382 AELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKIT----KLPTVALLDDDGNYTGLKF--HGVPSGHELNSFILALY 454 (555)
T ss_pred HHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCC----cCCEEEEEeCCCcccceEE--EecCccHhHHHHHHHHH
Confidence 45555556666 44578888888877777789999998 467666542 2 12 777 78777788888888877
Q ss_pred cCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCccE-EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccc
Q psy9102 83 AGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDV-LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKD 161 (277)
Q Consensus 83 ~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~ 161 (277)
.-.-... .+.+.. .+.+..-++++ +-.|.+++|+.|... ...+.+++.+..+ |..-.+|..
T Consensus 455 ~~~~~~~----~l~~~~------------~~~i~~~~~~~~i~v~~~~~C~~Cp~~-~~~~~~~~~~~~~-i~~~~i~~~ 516 (555)
T TIGR03143 455 NAAGPGQ----PLGEEL------------LEKIKKITKPVNIKIGVSLSCTLCPDV-VLAAQRIASLNPN-VEAEMIDVS 516 (555)
T ss_pred HhcCCCC----CCCHHH------------HHHHHhcCCCeEEEEEECCCCCCcHHH-HHHHHHHHHhCCC-ceEEEEECc
Confidence 5432220 022111 11223333554 556789999999998 5788888888664 999999999
Q ss_pred ccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHH
Q psy9102 162 DFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 162 ~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi 207 (277)
.+++++++|+|.+ +|++++-. ...+.|..+.+++..+|
T Consensus 517 ~~~~~~~~~~v~~----vP~~~i~~----~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 517 HFPDLKDEYGIMS----VPAIVVDD----QQVYFGKKTIEEMLELI 554 (555)
T ss_pred ccHHHHHhCCcee----cCEEEECC----EEEEeeCCCHHHHHHhh
Confidence 9999999999998 99999843 23356888999998876
No 135
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.83 E-value=4.6e-09 Score=76.80 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=43.9
Q ss_pred CCCeEecchhcHHHHhhcCCCcEEEEEECCCCHH--Hh--hhhHHHHHHHhhC
Q psy9102 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGH--CK--KLTPVYEEVGEKA 277 (277)
Q Consensus 229 ~~~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~--c~--~~~p~~~~la~~~ 277 (277)
...|..++++||++.+.+++..++|.|+++||++ |+ ++.|++.++|.++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~ 60 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQV 60 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHH
Confidence 3568889999999999999999999999999976 99 8999999999864
No 136
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.83 E-value=2.4e-08 Score=69.26 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=59.6
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCH
Q psy9102 121 DVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSV 200 (277)
Q Consensus 121 ~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~ 200 (277)
..+..|+++||++|... .+.+.+++..+.+ +.+..+|.++.+.++..|||.+ +|++++ + |+ ..+.|..+.
T Consensus 14 v~i~~F~~~~C~~C~~~-~~~~~~l~~~~~~-i~~~~vd~~~~~e~a~~~~V~~----vPt~vi-d--G~-~~~~G~~~~ 83 (89)
T cd03026 14 INFETYVSLSCHNCPDV-VQALNLMAVLNPN-IEHEMIDGALFQDEVEERGIMS----VPAIFL-N--GE-LFGFGRMTL 83 (89)
T ss_pred EEEEEEECCCCCCcHHH-HHHHHHHHHHCCC-ceEEEEEhHhCHHHHHHcCCcc----CCEEEE-C--CE-EEEeCCCCH
Confidence 36778899999999998 6899999988764 9999999999999999999998 999976 3 33 233576665
Q ss_pred HHHH
Q psy9102 201 ENLE 204 (277)
Q Consensus 201 ~~l~ 204 (277)
+++.
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 5543
No 137
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.83 E-value=1.5e-08 Score=73.89 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=33.2
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEe
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAIS 158 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~v 158 (277)
+++++|.||++||++|+.+ .+.+.++++++.+.+.++.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~-~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKL-LPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred CCeEEEEEECCCCcchHhH-hHHHHHHHHHhcCCcEEEEE
Confidence 6899999999999999998 58999999888776665555
No 138
>PLN02309 5'-adenylylsulfate reductase
Probab=98.82 E-value=6.1e-09 Score=92.81 Aligned_cols=50 Identities=34% Similarity=0.676 Sum_probs=44.4
Q ss_pred CCCCeEecchhcHHHHhh--cCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 228 NSGPVKVAVAKNFDEVVT--NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 228 ~~~~v~~l~~~~f~~~v~--~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++..|..|+.++|++++. +.++.+||+||||||++|++|.|.|+++|++|
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~ 394 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKL 394 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHh
Confidence 345788999999999874 56789999999999999999999999999864
No 139
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.82 E-value=2.8e-08 Score=73.32 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=77.1
Q ss_pred ccceeeeecCCccEEEEEecCC--ChhhhhhhHHHHHHHHhhcCC-cceEEEecccccchhhhccCcccCCCCCCeEEEE
Q psy9102 109 KNFDEVVTNNEKDVLVEFYAPW--CGHCTNYWRNRILKVAKGFAD-KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVR 185 (277)
Q Consensus 109 ~~~~~~~~~~~~~~~v~F~~~~--c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~ 185 (277)
.+++.++.. ....+++|-..- ++.+... .-++.+++++|.+ ++.++.||+++++.++..|||.+ +||+++|
T Consensus 25 ~~~~~~~~~-~~~~vl~~~gdp~r~~E~~D~-avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~s----iPTLl~F 98 (132)
T PRK11509 25 SRLDDWLTQ-APDGVVLLSSDPKRTPEVSDN-PVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR----FPATLVF 98 (132)
T ss_pred ccHHHHHhC-CCcEEEEeCCCCCcCCccccH-HHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCcc----CCEEEEE
Confidence 444554433 344554443221 5556665 4688899999985 59999999999999999999998 9999999
Q ss_pred cCCCceeeecCCCCHHHHHHHHHHHhcC
Q psy9102 186 AEDGKKYAMKDEFSVENLESFLTKVVAG 213 (277)
Q Consensus 186 ~~~~~~~~~~g~~~~~~l~~fi~~~~~~ 213 (277)
+++...-...|..+.+.+.++|+.+++.
T Consensus 99 kdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 99 TGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred ECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 9777677888999999999999999874
No 140
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.81 E-value=8.6e-09 Score=73.74 Aligned_cols=45 Identities=40% Similarity=0.902 Sum_probs=39.4
Q ss_pred eEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 232 v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+..+++.+|++.+.++ +.++|.|||+||++|+++.|.++++++.+
T Consensus 2 ~~~l~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~~~~~~~~~~~ 46 (104)
T cd02997 2 VVHLTDEDFRKFLKKE-KHVLVMFYAPWCGHCKKMKPEFTKAATEL 46 (104)
T ss_pred eEEechHhHHHHHhhC-CCEEEEEECCCCHHHHHhCHHHHHHHHHH
Confidence 5678899999988664 59999999999999999999999998753
No 141
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.80 E-value=9.4e-09 Score=74.83 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=40.1
Q ss_pred CCeEecch-hcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 230 GPVKVAVA-KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 230 ~~v~~l~~-~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.+..++. +.|.+.+.+ +..++|.||+|||++|+++.|.+++|++++
T Consensus 4 g~v~~i~~~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~ 51 (113)
T cd02989 4 GKYREVSDEKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKH 51 (113)
T ss_pred CCeEEeCCHHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHc
Confidence 45666666 889988865 478999999999999999999999999864
No 142
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.78 E-value=3.1e-08 Score=79.48 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=67.5
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc-----------cchhhhccCccc-----------
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD-----------FQHELNEFGFDY----------- 174 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~-----------~~~~~~~~~i~~----------- 174 (277)
.+++++|.||++||++|+..+ +.|.++.++|+++ +.++.|++++ ...+++.+++..
T Consensus 38 kGkvvlv~fwAswC~~C~~e~-p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHV-DQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHH-HHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 368999999999999999874 8999999999875 8888887531 123344444421
Q ss_pred ---------------------CCCCCC---eEEEEcCCCce-eeecCCCCHHHHHHHHHHHhc
Q psy9102 175 ---------------------VPSDKP---LVFVRAEDGKK-YAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 175 ---------------------~~~~~P---~i~~~~~~~~~-~~~~g~~~~~~l~~fi~~~~~ 212 (277)
....+| +.++++.+|++ .++.|..+.+.|.+.|+.+++
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 001122 56777877764 466788888999999998876
No 143
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.77 E-value=2.3e-08 Score=73.68 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=46.1
Q ss_pred ecCCccEEEEEecCCChhhhhhhHHHHH--HHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCc
Q psy9102 116 TNNEKDVLVEFYAPWCGHCTNYWRNRIL--KVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK 190 (277)
Q Consensus 116 ~~~~~~~~v~F~~~~c~~c~~~~~~~~~--~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~ 190 (277)
...+|+++|+|++.||++|+.|-+..+. ++.+..+.++..+.++.+....-....| .+ +|+++|++++|+
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~----vPtivFld~~g~ 91 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QY----VPRIMFVDPSLT 91 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cc----cCeEEEECCCCC
Confidence 3567999999999999999999333333 4555554455555666543322222233 33 999999998875
No 144
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.76 E-value=1.4e-08 Score=79.64 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=43.0
Q ss_pred CCCeEecch-hcHHHHhhcCC--CcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 229 SGPVKVAVA-KNFDEVVTNNE--KDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 229 ~~~v~~l~~-~~f~~~v~~~~--~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
-+.+..++. ++|.+.+.+++ ..++|.||+|||++|+.+.|.|++||..|
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~ 112 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY 112 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC
Confidence 467888888 99999997654 48999999999999999999999999875
No 145
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.75 E-value=8e-08 Score=78.61 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=68.6
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc-----------cchhh-hccCccc------C--C
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD-----------FQHEL-NEFGFDY------V--P 176 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~-----------~~~~~-~~~~i~~------~--~ 176 (277)
.+++++|.||++||++|...+ +.|.++.++|+++ +.++.|+++. ...++ +.+++.. . .
T Consensus 98 kGK~vvl~FwAswCp~c~~e~-p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNY-SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHH-HHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 458999999999999999984 8999999999876 7887777631 11222 2333321 0 0
Q ss_pred ----------------------CCCCeEEEEcCCCc-eeeecCCCCHHHHHHHHHHHhc
Q psy9102 177 ----------------------SDKPLVFVRAEDGK-KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 177 ----------------------~~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
...|+.++++.+|+ +.++.|..+.++|.+.|+.+++
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 12478888888887 5577898999999999998874
No 146
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.75 E-value=1.1e-07 Score=88.34 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=105.7
Q ss_pred ceeeeecCCcc-EEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCC
Q psy9102 111 FDEVVTNNEKD-VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG 189 (277)
Q Consensus 111 ~~~~~~~~~~~-~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~ 189 (277)
+...+.+-.++ .++.|+.+.|..|..+ ...+++++ .+.++|.+...|...+...++.|++.. .|++.+.+.++
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~-~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~----~P~~~i~~~~~ 430 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAEL-QSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITK----LPTVALLDDDG 430 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHH-HHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCc----CCEEEEEeCCC
Confidence 33444444566 4667888889999998 67777877 666789998889888888999999987 99998886444
Q ss_pred c--eeeecCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhcHHHHhhcCCCcE-EEEEECCCCHHHhhh
Q psy9102 190 K--KYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDV-LVEFYAPWCGHCKKL 266 (277)
Q Consensus 190 ~--~~~~~g~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~f~~~v~~~~~~~-lV~f~apwC~~c~~~ 266 (277)
+ ..+|.|-..-.++..||..++. -| +.-..|..+..+.+ .+-++++ +-.|.+|+|+.|.+.
T Consensus 431 ~~~~i~f~g~P~G~Ef~s~i~~i~~-------~~--------~~~~~l~~~~~~~i-~~~~~~~~i~v~~~~~C~~Cp~~ 494 (555)
T TIGR03143 431 NYTGLKFHGVPSGHELNSFILALYN-------AA--------GPGQPLGEELLEKI-KKITKPVNIKIGVSLSCTLCPDV 494 (555)
T ss_pred cccceEEEecCccHhHHHHHHHHHH-------hc--------CCCCCCCHHHHHHH-HhcCCCeEEEEEECCCCCCcHHH
Confidence 3 4688888888899999998875 11 11224544555444 4444565 446689999999999
Q ss_pred hHHHHHHHhh
Q psy9102 267 TPVYEEVGEK 276 (277)
Q Consensus 267 ~p~~~~la~~ 276 (277)
...+++++..
T Consensus 495 ~~~~~~~~~~ 504 (555)
T TIGR03143 495 VLAAQRIASL 504 (555)
T ss_pred HHHHHHHHHh
Confidence 9999888764
No 147
>smart00594 UAS UAS domain.
Probab=98.74 E-value=4.4e-08 Score=72.34 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=66.6
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHHH--HHHhhcCCcceEEEeccccc--chhhhccCcccCCCCCCeEEEEcCCC-c-
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRIL--KVAKGFADKFTFAISAKDDF--QHELNEFGFDYVPSDKPLVFVRAEDG-K- 190 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~~--~la~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~~~~~P~i~~~~~~~-~- 190 (277)
..+|+++|+|+++||+.|..+-+..|. ++.+.++.++.+..+|.... ..++..|++++ +|++++++..+ .
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~----~P~~~~l~~~~g~~ 100 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDS----FPYVAIVDPRTGQR 100 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCC----CCEEEEEecCCCce
Confidence 456899999999999999998444454 56666766777777776643 45789999988 99998887554 2
Q ss_pred ----eeeecCCCCHHHHHHHH
Q psy9102 191 ----KYAMKDEFSVENLESFL 207 (277)
Q Consensus 191 ----~~~~~g~~~~~~l~~fi 207 (277)
..+..|..++++|..++
T Consensus 101 ~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 101 VIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred eEEEeccccCCCCHHHHHHhh
Confidence 33667999999998876
No 148
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.74 E-value=5.6e-08 Score=72.26 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=54.5
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEeccc---------------------------ccchhhhc
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKD---------------------------DFQHELNE 169 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~---------------------------~~~~~~~~ 169 (277)
.+++++|+||+.||++|...+ +.+.++.++|+++ +.++.|... ....+.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~-p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTL-PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 458999999999999999984 9999999999864 666666431 01234455
Q ss_pred cCcccCCCCCCeEEEEcCCCc-eeeecC
Q psy9102 170 FGFDYVPSDKPLVFVRAEDGK-KYAMKD 196 (277)
Q Consensus 170 ~~i~~~~~~~P~i~~~~~~~~-~~~~~g 196 (277)
|++.. +|+.++++.+|+ .+.+.|
T Consensus 101 ~~v~~----~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 101 YGNQY----WPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hCCCc----CCeEEEECCCCcEEEEEec
Confidence 77766 999999987776 344444
No 149
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.73 E-value=1.5e-08 Score=72.08 Aligned_cols=42 Identities=60% Similarity=1.219 Sum_probs=37.5
Q ss_pred cchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 235 AVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 235 l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
|++++|++.+. .++.++|+||++||++|+++.|.|++++..+
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~ 42 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKEL 42 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHh
Confidence 56789999987 6789999999999999999999999998754
No 150
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.72 E-value=1.1e-07 Score=75.77 Aligned_cols=90 Identities=22% Similarity=0.240 Sum_probs=62.0
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccc------------------ccchhhhccCcccCCCCC
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKD------------------DFQHELNEFGFDYVPSDK 179 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~------------------~~~~~~~~~~i~~~~~~~ 179 (277)
.+++++|+||++||++|+..+ +.+.++.+++..++.++..|.. ....+.+.|++.. +
T Consensus 73 ~gk~vvl~F~atwCp~C~~~l-p~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~----~ 147 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLF-PIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK----I 147 (189)
T ss_pred CCCEEEEEEECCCChhHHHHH-HHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc----c
Confidence 458999999999999999984 8898888765544544442210 1224456778876 9
Q ss_pred CeEEEEcCCCceeeecCC-CCHHHHHHHHHHHhcC
Q psy9102 180 PLVFVRAEDGKKYAMKDE-FSVENLESFLTKVVAG 213 (277)
Q Consensus 180 P~i~~~~~~~~~~~~~g~-~~~~~l~~fi~~~~~~ 213 (277)
|+.++++++|+.. +.|. .+.+.+.+.++....|
T Consensus 148 P~~~lID~~G~I~-~~g~~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 148 PYGVLLDQDGKIR-AKGLTNTREHLESLLEADREG 181 (189)
T ss_pred ceEEEECCCCeEE-EccCCCCHHHHHHHHHHHHcC
Confidence 9999988888543 3453 3556777777765443
No 151
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.72 E-value=2.2e-08 Score=79.60 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=43.7
Q ss_pred CCCCeEecchhcHHHHhhcCC--CcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 228 NSGPVKVAVAKNFDEVVTNNE--KDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 228 ~~~~v~~l~~~~f~~~v~~~~--~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.-+.|..++.++|...|.+++ ..++|.||++||++|+.|.|.|++||..|
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~ 131 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKF 131 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHC
Confidence 347899999999998876554 48999999999999999999999999875
No 152
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.71 E-value=2.4e-08 Score=70.56 Aligned_cols=40 Identities=30% Similarity=0.841 Sum_probs=35.7
Q ss_pred hhcHHHHhhcC-CCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 237 AKNFDEVVTNN-EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 237 ~~~f~~~v~~~-~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
.++|++.+.+. ++.++|.||+|||++|+++.|.|+++++.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~ 42 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKE 42 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHH
Confidence 56788888765 68999999999999999999999999876
No 153
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.69 E-value=1.8e-08 Score=72.23 Aligned_cols=39 Identities=56% Similarity=1.159 Sum_probs=33.3
Q ss_pred hhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 237 ~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+++|++.. + ++.++|.||||||++|+++.|.|+++++++
T Consensus 6 ~~~~~~~~-~-~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~ 44 (104)
T cd03000 6 DDSFKDVR-K-EDIWLVDFYAPWCGHCKKLEPVWNEVGAEL 44 (104)
T ss_pred hhhhhhhc-c-CCeEEEEEECCCCHHHHhhChHHHHHHHHH
Confidence 57888753 3 578999999999999999999999998763
No 154
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.68 E-value=1.3e-07 Score=67.47 Aligned_cols=75 Identities=36% Similarity=0.603 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcC-CCCcccCCCC-CCHHHHHHHHHHH
Q psy9102 5 GTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE-DGKKYAMKDE-FSVENLESFLTKV 81 (277)
Q Consensus 5 ~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~-~~~~y~~~g~-~~~~~i~~fi~~~ 81 (277)
+++.+.+.|.++|+++++++.|+.+|.++.+++++.+||... ..|++++.+. +|.+|.+.++ .+.++|.+||.++
T Consensus 26 ~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~--~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 26 ESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEE--DLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred hHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChh--hCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 368899999999999999999999999999999999999943 4676665543 3555544544 5999999999875
No 155
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.68 E-value=3.1e-08 Score=67.80 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=48.3
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHH-H--HHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcC
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRI-L--KVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE 187 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~-~--~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~ 187 (277)
..+++++|+|+++||+.|+.+ ...+ . ++.+.+..++.++.+|.+.........+ .+ +|+++++++
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l-~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~----~P~~~~ldp 82 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKL-EREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QG----YPTFFFLDP 82 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHH-HHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CS----SSEEEEEET
T ss_pred HcCCCEEEEEECCCCHhHHHH-HHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-cc----CCEEEEeCC
Confidence 567999999999999999998 4444 2 4555466679999999976655443222 55 999988763
No 156
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.68 E-value=3.6e-08 Score=72.66 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=37.9
Q ss_pred eEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 232 v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
+..++.+.|.+.+.+ ++..+|+|+++||++|+++.|.+++++++
T Consensus 8 ~~~it~~~~~~~i~~-~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~ 51 (122)
T TIGR01295 8 LEVTTVVRALEALDK-KETATFFIGRKTCPYCRKFSGTLSGVVAQ 51 (122)
T ss_pred ceecCHHHHHHHHHc-CCcEEEEEECCCChhHHHHhHHHHHHHHh
Confidence 456777888888855 56799999999999999999999999875
No 157
>PRK10996 thioredoxin 2; Provisional
Probab=98.67 E-value=4.6e-08 Score=73.98 Aligned_cols=46 Identities=33% Similarity=0.952 Sum_probs=40.0
Q ss_pred CCeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 230 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 230 ~~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
+.+..++.++|++.+.+ ++.++|.||++||++|+++.|.|+++++.
T Consensus 35 ~~~i~~~~~~~~~~i~~-~k~vvv~F~a~wC~~C~~~~~~l~~l~~~ 80 (139)
T PRK10996 35 GEVINATGETLDKLLQD-DLPVVIDFWAPWCGPCRNFAPIFEDVAAE 80 (139)
T ss_pred CCCEEcCHHHHHHHHhC-CCeEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 44666889999988754 78999999999999999999999999875
No 158
>KOG0911|consensus
Probab=98.67 E-value=5.8e-08 Score=76.75 Aligned_cols=148 Identities=12% Similarity=0.153 Sum_probs=92.8
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCC
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDE 197 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~ 197 (277)
..+..++.||++||.+|+++ .+.+..+++.++ .+.|+.++.++.+.++..+.+.. .|++.++..+.+.-+..|.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~-~~v~~~~~~~~~-~~~~~k~~a~~~~eis~~~~v~~----vp~~~~~~~~~~v~~l~~~ 89 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQM-DQVFDHLAEYFK-NAQFLKLEAEEFPEISNLIAVEA----VPYFVFFFLGEKVDRLSGA 89 (227)
T ss_pred ccchhhhhhhhhhhhhhhhH-HHHHHHHHHhhh-hheeeeehhhhhhHHHHHHHHhc----Cceeeeeecchhhhhhhcc
Confidence 56789999999999999999 688889988884 49999999999999999999988 9999776544445555553
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEe--cchhcHHHHhhcCCCcEEEEE-----ECCCCHHHhhhhHHH
Q psy9102 198 FSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKV--AVAKNFDEVVTNNEKDVLVEF-----YAPWCGHCKKLTPVY 270 (277)
Q Consensus 198 ~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~--l~~~~f~~~v~~~~~~~lV~f-----~apwC~~c~~~~p~~ 270 (277)
........ +........ ........+......... .-.+..++.++. .-++.| -.|.||+++++..++
T Consensus 90 ~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a---~~v~lFmKG~p~~P~CGFS~~~v~iL 164 (227)
T KOG0911|consen 90 DPPFLVSK-VEKLAESGS-ASLGMGLSTTIRETQTTNETDLDNRLEKLVKA---KPVMLFMKGTPEEPKCGFSRQLVGIL 164 (227)
T ss_pred CcHHHHHH-HHHhhhhcc-cccCCCCCcchhcccccchhhHHHHHHHhccc---CeEEEEecCCCCcccccccHHHHHHH
Confidence 33332222 222211111 111111111100000000 022344444433 233344 489999999999999
Q ss_pred HHHHhh
Q psy9102 271 EEVGEK 276 (277)
Q Consensus 271 ~~la~~ 276 (277)
+..+..
T Consensus 165 ~~~nV~ 170 (227)
T KOG0911|consen 165 QSHNVN 170 (227)
T ss_pred HHcCCC
Confidence 987654
No 159
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.64 E-value=4.6e-08 Score=69.36 Aligned_cols=43 Identities=44% Similarity=1.013 Sum_probs=37.9
Q ss_pred cchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 235 AVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 235 l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|.+.+.+.++.++|.||++||++|+++.|.|+++++.+
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~ 43 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEY 43 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHh
Confidence 3567899988887789999999999999999999999998653
No 160
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.62 E-value=2.9e-07 Score=70.85 Aligned_cols=92 Identities=15% Similarity=0.269 Sum_probs=63.8
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc-----------cchhhhc-cCccc----------
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD-----------FQHELNE-FGFDY---------- 174 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~-----------~~~~~~~-~~i~~---------- 174 (277)
.+++++|.||++||++|+..+ +.+.++.++|+++ +.++.|++.. ...+++. +++..
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~-~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNY-RALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhH-HHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 357899999999999999885 8999999999864 7888777521 1223322 33221
Q ss_pred ------------CCCCCCe----EEEEcCCCc-eeeecCCCCHHHHHHHHHHH
Q psy9102 175 ------------VPSDKPL----VFVRAEDGK-KYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 175 ------------~~~~~P~----i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~ 210 (277)
....+|+ .++++++|+ ...+.|..+.+.|.+.|+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 0023676 677777776 45677888888888887764
No 161
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.62 E-value=2.7e-07 Score=70.35 Aligned_cols=77 Identities=25% Similarity=0.412 Sum_probs=57.5
Q ss_pred CCccEEEEEecC-CChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc---------------------cchhhhccCcc-
Q psy9102 118 NEKDVLVEFYAP-WCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD---------------------FQHELNEFGFD- 173 (277)
Q Consensus 118 ~~~~~~v~F~~~-~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~---------------------~~~~~~~~~i~- 173 (277)
.+++++|.||++ ||++|+..+ +.+.++++.|+++ +.++.|..+. ...+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~-p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKEL-PYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHH-HHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhh-hhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 468999999999 999999984 8999999887765 6666555432 23466778876
Q ss_pred --------cCCCCCCeEEEEcCCCce-eeecCCCC
Q psy9102 174 --------YVPSDKPLVFVRAEDGKK-YAMKDEFS 199 (277)
Q Consensus 174 --------~~~~~~P~i~~~~~~~~~-~~~~g~~~ 199 (277)
. +|++++++++|++ +...|...
T Consensus 106 ~~~~~~~~~----~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFG----IPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSS----SSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCe----ecEEEEEECCCEEEEEEeCCCC
Confidence 5 9999988888864 44445443
No 162
>PTZ00051 thioredoxin; Provisional
Probab=98.61 E-value=8.7e-08 Score=67.77 Aligned_cols=41 Identities=37% Similarity=0.934 Sum_probs=34.6
Q ss_pred chhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 236 VAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 236 ~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.+.|++.+ +.++.++|.||++||++|+++.|.|+++++++
T Consensus 7 ~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~ 47 (98)
T PTZ00051 7 SQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY 47 (98)
T ss_pred CHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc
Confidence 456777766 45689999999999999999999999998753
No 163
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.61 E-value=5.5e-07 Score=70.61 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=69.6
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC-cceEEEecccc-----------------------------cchhh
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD-KFTFAISAKDD-----------------------------FQHEL 167 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~~-----------------------------~~~~~ 167 (277)
.+++++++||++||+.|...+ +.+.++.++|++ .+.++.|..+. ...+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~-~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIE-DRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 457899999999999999884 899999999974 47777776542 12345
Q ss_pred hccCcccCCCCCCeEEEEcCCCceeee----------cCCCCHHHHHHHHHHHhcCC
Q psy9102 168 NEFGFDYVPSDKPLVFVRAEDGKKYAM----------KDEFSVENLESFLTKVVAGE 214 (277)
Q Consensus 168 ~~~~i~~~~~~~P~i~~~~~~~~~~~~----------~g~~~~~~l~~fi~~~~~~~ 214 (277)
+.||+.. .|++++++++|+.... .+..+.+++.+.|+..+.|+
T Consensus 103 ~~~~v~~----~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 103 KAYGAAC----TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHcCCCc----CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 5778876 8999999988864321 12346788999999999865
No 164
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.61 E-value=8.2e-08 Score=68.79 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=39.0
Q ss_pred ecchhcHHHHhhcCCCcEEEEEECCC--CHHHhhhhHHHHHHHhhC
Q psy9102 234 VAVAKNFDEVVTNNEKDVLVEFYAPW--CGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 234 ~l~~~~f~~~v~~~~~~~lV~f~apw--C~~c~~~~p~~~~la~~~ 277 (277)
.++..||++.+ +.+..++|.||++| |++|+.+.|.|+++|++|
T Consensus 14 ~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~ 58 (111)
T cd02965 14 RVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAF 58 (111)
T ss_pred ccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHC
Confidence 57889999888 66789999999997 999999999999999875
No 165
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.60 E-value=1.2e-06 Score=69.26 Aligned_cols=113 Identities=16% Similarity=0.275 Sum_probs=92.5
Q ss_pred HHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC-CceeeecCC-CCHHHHHHHHHHHhcCCCCC
Q psy9102 140 NRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED-GKKYAMKDE-FSVENLESFLTKVVAGEVDP 217 (277)
Q Consensus 140 ~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~-~~~~~~~g~-~~~~~l~~fi~~~~~~~~~~ 217 (277)
..|.++|+.+.+.+.|+.+. +..+++.+++. .|+++++++. ++...|.|. ++.+.|.+||....-
T Consensus 10 ~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~-----~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~----- 76 (184)
T PF13848_consen 10 EIFEEAAEKLKGDYQFGVTF---NEELAKKYGIK-----EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF----- 76 (184)
T ss_dssp HHHHHHHHHHTTTSEEEEEE----HHHHHHCTCS-----SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS-----
T ss_pred HHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCC-----CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcc-----
Confidence 68899999999889999887 56788889997 6999888863 457888887 899999999998754
Q ss_pred CCCCCCCCCCCCCCeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 218 YIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 218 ~~ks~~~p~~~~~~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.|..++.+|+..+.......+++.|...-......+...++++|+.+
T Consensus 77 ------------P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 124 (184)
T PF13848_consen 77 ------------PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKF 124 (184)
T ss_dssp ------------TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCT
T ss_pred ------------ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhc
Confidence 568899999999987653334777887777788899999999998754
No 166
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.58 E-value=7.6e-08 Score=70.18 Aligned_cols=42 Identities=29% Similarity=0.623 Sum_probs=35.9
Q ss_pred chhcHHHHhhcC-CCcEEEEEEC-------CCCHHHhhhhHHHHHHHhhC
Q psy9102 236 VAKNFDEVVTNN-EKDVLVEFYA-------PWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 236 ~~~~f~~~v~~~-~~~~lV~f~a-------pwC~~c~~~~p~~~~la~~~ 277 (277)
+.++|.+.+.+. +++++|.||| +||++|+.+.|.+++++.++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~ 57 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAA 57 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHC
Confidence 457788888654 5799999999 99999999999999998764
No 167
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.58 E-value=6.6e-08 Score=73.32 Aligned_cols=39 Identities=33% Similarity=0.687 Sum_probs=33.0
Q ss_pred hcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 238 ~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
..|++.+ +.++.++|.|||+||++|+++.|.|+++++.|
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~ 49 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKY 49 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHh
Confidence 4566654 55789999999999999999999999998764
No 168
>KOG1731|consensus
Probab=98.57 E-value=1.5e-08 Score=90.09 Aligned_cols=50 Identities=30% Similarity=0.757 Sum_probs=46.5
Q ss_pred CCCCeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 228 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 228 ~~~~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.+++|..|+.+||...+..+.+..+|.||+.|||||++++|.|+++|+++
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl 86 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDL 86 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHH
Confidence 45789999999999999998889999999999999999999999999863
No 169
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.56 E-value=1.1e-07 Score=67.20 Aligned_cols=43 Identities=56% Similarity=1.151 Sum_probs=37.9
Q ss_pred ecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 234 VAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 234 ~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.++.++|.+.+.+.+ .++|+||++||++|+++.|.|+++++.+
T Consensus 2 ~l~~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~ 44 (101)
T cd02961 2 ELTDDNFDELVKDSK-DVLVEFYAPWCGHCKALAPEYEKLAKEL 44 (101)
T ss_pred cccHHHHHHHHhCCC-cEEEEEECCCCHHHHhhhHHHHHHHHHh
Confidence 467889999987765 9999999999999999999999998753
No 170
>PLN02412 probable glutathione peroxidase
Probab=98.52 E-value=7.9e-07 Score=69.41 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc--------cch----hhhccCccc--------C-
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD--------FQH----ELNEFGFDY--------V- 175 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~--------~~~----~~~~~~i~~--------~- 175 (277)
.+++++|.||++||++|+..+ +.|.++.++|+++ +.++.|.++. ... +++.++++. .
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~-~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNY-KELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHH-HHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 358999999999999999763 8999999999976 8888777531 111 123323321 0
Q ss_pred ---------------------CCCCCeEEEEcCCCc-eeeecCCCCHHHHHHHHHHHhc
Q psy9102 176 ---------------------PSDKPLVFVRAEDGK-KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 176 ---------------------~~~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
-...|+.++++.+|+ ...+.|..+.++|...|+.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 011478888887777 4566789999999999988875
No 171
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.50 E-value=1.7e-07 Score=67.76 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=37.7
Q ss_pred eEecchhcHHHHhhcCCCcEEEEEEC--CCCH---HHhhhhHHHHHHHh
Q psy9102 232 VKVAVAKNFDEVVTNNEKDVLVEFYA--PWCG---HCKKLTPVYEEVGE 275 (277)
Q Consensus 232 v~~l~~~~f~~~v~~~~~~~lV~f~a--pwC~---~c~~~~p~~~~la~ 275 (277)
+..|+..||++.|.+ .+.+||.||| |||+ +|++++|.+.+.+.
T Consensus 3 ~v~L~~~nF~~~v~~-~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~ 50 (116)
T cd03007 3 CVDLDTVTFYKVIPK-FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD 50 (116)
T ss_pred eeECChhhHHHHHhc-CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC
Confidence 567999999999865 5789999999 9999 99999999987653
No 172
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.50 E-value=2.9e-07 Score=82.85 Aligned_cols=86 Identities=17% Similarity=0.336 Sum_probs=68.4
Q ss_pred ccEEEEEecCCChhhhhhhHHHHH--HHHhhcCCcceEEEecccccc----hhhhccCcccCCCCCCeEEEEcCCCc-ee
Q psy9102 120 KDVLVEFYAPWCGHCTNYWRNRIL--KVAKGFADKFTFAISAKDDFQ----HELNEFGFDYVPSDKPLVFVRAEDGK-KY 192 (277)
Q Consensus 120 ~~~~v~F~~~~c~~c~~~~~~~~~--~la~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~~~~~P~i~~~~~~~~-~~ 192 (277)
+||+|+|||+||-.||.+-+..+. ++..+..+ +...++|.+++. .+.++||+-+ .|++++|+++|+ ..
T Consensus 475 ~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G----~P~~~ff~~~g~e~~ 549 (569)
T COG4232 475 KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFG----VPTYLFFGPQGSEPE 549 (569)
T ss_pred CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCC----CCEEEEECCCCCcCc
Confidence 599999999999999988333443 44555555 889999998764 4678899988 999999996654 55
Q ss_pred eecCCCCHHHHHHHHHHH
Q psy9102 193 AMKDEFSVENLESFLTKV 210 (277)
Q Consensus 193 ~~~g~~~~~~l~~fi~~~ 210 (277)
...|.++.+.+.+++++.
T Consensus 550 ~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 550 ILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCcceecHHHHHHHHHHh
Confidence 578999999999999875
No 173
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.49 E-value=4.5e-07 Score=69.66 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecc
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAK 160 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~ 160 (277)
.+++++|.||++||+ |...+ +.|.++.++|+++ +.++.|.+
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~-p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQY-EGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHH-HHHHHHHHHhcCCCEEEEEecc
Confidence 358999999999999 99985 8999999999764 77777754
No 174
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.49 E-value=1.4e-07 Score=67.51 Aligned_cols=38 Identities=32% Similarity=0.560 Sum_probs=30.0
Q ss_pred hcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHH---HHHHhh
Q psy9102 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVY---EEVGEK 276 (277)
Q Consensus 238 ~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~---~~la~~ 276 (277)
+.|++.+ +.+++++|+||+|||++|+++.|.+ .++++.
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~ 42 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAA 42 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHH
Confidence 4566665 4468999999999999999999887 456543
No 175
>KOG0914|consensus
Probab=98.46 E-value=1.8e-07 Score=73.34 Aligned_cols=91 Identities=16% Similarity=0.307 Sum_probs=72.4
Q ss_pred CCeEEe-ecccceeee-ecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccccchhhhccCcccCC-
Q psy9102 101 GPVKVA-VAKNFDEVV-TNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDFQHELNEFGFDYVP- 176 (277)
Q Consensus 101 ~~i~~~-~~~~~~~~~-~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~~~~~~~~~i~~~~- 176 (277)
+.+... +++.+++.. .+....|+|-|++-|.+.|... .|.+.+|+.+|... +.|++||+...++.+.+|+|+.-+
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~-spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~ 202 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRF-SPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPG 202 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhccc-ccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcc
Confidence 345555 444444443 3455689999999999999999 79999999999876 999999999999999999998533
Q ss_pred -CCCCeEEEEcCCCcee
Q psy9102 177 -SDKPLVFVRAEDGKKY 192 (277)
Q Consensus 177 -~~~P~i~~~~~~~~~~ 192 (277)
.++||++++.++.+.-
T Consensus 203 srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKEVS 219 (265)
T ss_pred cccCCeEEEEccchhhh
Confidence 6899999888665543
No 176
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.46 E-value=2.3e-07 Score=67.93 Aligned_cols=32 Identities=31% Similarity=0.761 Sum_probs=28.0
Q ss_pred hhcCCCcEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 244 VTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 244 v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
..+.+++++|.|||+||++|+.+.|.+.+++.
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~ 46 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKE 46 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHH
Confidence 34567899999999999999999999998754
No 177
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.45 E-value=1.3e-06 Score=68.62 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=58.7
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceE------EEecccc-----------------------------c
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTF------AISAKDD-----------------------------F 163 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~------~~vd~~~-----------------------------~ 163 (277)
++.++|.|||.||++|+.. .|.+.+++.+ + +.+ ..||.++ .
T Consensus 59 GKV~lvn~~Aswc~~c~~e-~P~l~~l~~~--~-~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXN-ASLIDAIKAA--K-FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCEEEEEEEecCCChhhcc-chHHHHHHHc--C-CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 6899999999999999998 6999988653 1 333 3334332 2
Q ss_pred chhhhccCcccCCCCCCeE-EEEcCCCc-eeeecCCCCHHHHHHHH
Q psy9102 164 QHELNEFGFDYVPSDKPLV-FVRAEDGK-KYAMKDEFSVENLESFL 207 (277)
Q Consensus 164 ~~~~~~~~i~~~~~~~P~i-~~~~~~~~-~~~~~g~~~~~~l~~fi 207 (277)
......||+.+ +|+. ++++++|+ .+...|.++.+++.+.+
T Consensus 135 g~v~~~~gv~~----~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNS----EDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCC----CCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 23445677776 9876 78898887 55778999988887743
No 178
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.45 E-value=3.2e-07 Score=64.83 Aligned_cols=38 Identities=24% Similarity=0.626 Sum_probs=33.3
Q ss_pred HHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 240 FDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 240 f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++..+.+.++.++|+||++||+.|+.+.|.++++++++
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~ 42 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEF 42 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHh
Confidence 45667778899999999999999999999999998753
No 179
>KOG4277|consensus
Probab=98.44 E-value=1e-05 Score=66.83 Aligned_cols=216 Identities=16% Similarity=0.177 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHhcCC---ceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC-CcccCCCCCCHHHHHHHHHHHh
Q psy9102 7 NYWRNRILKVAKGFAD---KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKDEFSVENLESFLTKVV 82 (277)
Q Consensus 7 ~~~~~~f~~~A~~~~~---~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~-~~y~~~g~~~~~~i~~fi~~~~ 82 (277)
+.+.+.+.++.-.+++ -++.+..|+..++.+++++||++ +|++.+..++. ..| .|+++.+.|.+|.....
T Consensus 59 KkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqG----YPTIk~~kgd~a~dY--RG~R~Kd~iieFAhR~a 132 (468)
T KOG4277|consen 59 KKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQG----YPTIKFFKGDHAIDY--RGGREKDAIIEFAHRCA 132 (468)
T ss_pred ccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCC----CceEEEecCCeeeec--CCCccHHHHHHHHHhcc
Confidence 5566778888777754 38999999999999999999997 47666664444 777 99999999999999999
Q ss_pred cCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccc
Q psy9102 83 AGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDD 162 (277)
Q Consensus 83 ~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~ 162 (277)
.+.+.+ +|++.. .|.++ ....++.+|+|.....|. ...+.+.|.+ ++.++..=. .
T Consensus 133 ~aiI~p------i~enQ~---------~fehl-q~Rhq~ffVf~Gtge~PL-----~d~fidAASe---~~~~a~FfS-a 187 (468)
T KOG4277|consen 133 AAIIEP------INENQI---------EFEHL-QARHQPFFVFFGTGEGPL-----FDAFIDAASE---KFSVARFFS-A 187 (468)
T ss_pred cceeee------cChhHH---------HHHHH-hhccCceEEEEeCCCCcH-----HHHHHHHhhh---heeeeeeec-c
Confidence 888887 775421 22222 233478888887554332 2455555544 233332221 1
Q ss_pred cchhh-hccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhcHH
Q psy9102 163 FQHEL-NEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFD 241 (277)
Q Consensus 163 ~~~~~-~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~f~ 241 (277)
...++ ..-..+. .|++++++.+ .+.....-+.+.|..||++-.= | .....++-++
T Consensus 188 seeVaPe~~~~ke----mpaV~VFKDe--tf~i~de~dd~dLseWinRERf------------~-----~fLa~dgflL- 243 (468)
T KOG4277|consen 188 SEEVAPEENDAKE----MPAVAVFKDE--TFEIEDEGDDEDLSEWINRERF------------P-----GFLAADGFLL- 243 (468)
T ss_pred ccccCCcccchhh----ccceEEEccc--eeEEEecCchhHHHHHHhHhhc------------c-----chhhcccchH-
Confidence 22233 2223344 8999888854 3443345567799999975321 0 0111222222
Q ss_pred HHhhcCCCcEEEEEECC-----CCHHHhhhhHHHHHHHhhC
Q psy9102 242 EVVTNNEKDVLVEFYAP-----WCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 242 ~~v~~~~~~~lV~f~ap-----wC~~c~~~~p~~~~la~~~ 277 (277)
..+.+++|.|.+..-.. ...+.+.+..+.+++|++|
T Consensus 244 ~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~ 284 (468)
T KOG4277|consen 244 AEIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDL 284 (468)
T ss_pred HHhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHH
Confidence 22344555554444322 2345667777777777654
No 180
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.39 E-value=1.5e-06 Score=72.38 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=73.4
Q ss_pred CCCeEEee-cccceeeeecCC--ccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCC
Q psy9102 100 SGPVKVAV-AKNFDEVVTNNE--KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVP 176 (277)
Q Consensus 100 ~~~i~~~~-~~~~~~~~~~~~--~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~ 176 (277)
.+.+.+++ ++.|...+...+ ..|+|+||.+.++.|..| ...|..||.+|.. +.|+.|..+.-+ ....|.+..
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~m-n~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~-- 198 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIM-NSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKN-- 198 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHH-HHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC--
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHH-HHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccC--
Confidence 46778885 477887775443 479999999999999999 7999999999998 999999987654 678899988
Q ss_pred CCCCeEEEEcCCCceeeec-------CCCCHHHHHHHHHHH
Q psy9102 177 SDKPLVFVRAEDGKKYAMK-------DEFSVENLESFLTKV 210 (277)
Q Consensus 177 ~~~P~i~~~~~~~~~~~~~-------g~~~~~~l~~fi~~~ 210 (277)
+||+++|.++...-.+. ..++..+|..|+..+
T Consensus 199 --LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 --LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp ---SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred --CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999654333322 267778888888764
No 181
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.33 E-value=3.6e-06 Score=66.73 Aligned_cols=93 Identities=15% Similarity=0.280 Sum_probs=61.7
Q ss_pred CccE-EEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEeccccc--------c---hh-hhccCccc----------
Q psy9102 119 EKDV-LVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDF--------Q---HE-LNEFGFDY---------- 174 (277)
Q Consensus 119 ~~~~-~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~--------~---~~-~~~~~i~~---------- 174 (277)
++++ ++.+|++||++|+..+ +.+.++.++|+++ +.++.|+++.. . .. .+.+|++.
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~-p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHY-TQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCcEEEEEEECCCCCchHHHH-HHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 4654 4566999999999885 8999999999865 88877765310 0 11 12222211
Q ss_pred C----------------------CCCCCe---EEEEcCCCc-eeeecCCCCHHHHHHHHHHHhc
Q psy9102 175 V----------------------PSDKPL---VFVRAEDGK-KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 175 ~----------------------~~~~P~---i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
. -..+|+ .++++++|+ +.++.|..+.+.+.+.|..+++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 0 013684 477777776 4566788888888888887764
No 182
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.32 E-value=2.8e-06 Score=61.23 Aligned_cols=65 Identities=25% Similarity=0.496 Sum_probs=55.5
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccc-ccchhhhccC--cccCCCCCCeEEEEcCC
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKD-DFQHELNEFG--FDYVPSDKPLVFVRAED 188 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~-~~~~~~~~~~--i~~~~~~~P~i~~~~~~ 188 (277)
++++++.||++||++|+.+ .+.+.++++++...+.+..+|.. ........|+ +.. +|++.++..+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAE-APLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRS----IPTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcCcCHHHHhh-chhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhcc----CCeEEEEeCc
Confidence 5789999999999999999 59999999999977899999986 6778888888 776 8998755543
No 183
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.31 E-value=2.6e-06 Score=56.45 Aligned_cols=69 Identities=19% Similarity=0.412 Sum_probs=50.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccch----hhhccCcccCCCCCCeEEEEcCCCceeeecCCC
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH----ELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEF 198 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~ 198 (277)
+..|+++||++|+.+ .+.|.+ ..+.+..+|++.++. +.+.+|+.. +|++++. ++. +.| .
T Consensus 2 i~lf~~~~C~~C~~~-~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~----vP~~~~~---~~~--~~g-~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA-KEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRG----VPVIVIG---HKI--IVG-F 64 (74)
T ss_pred EEEEcCCCChhHHHH-HHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCc----ccEEEEC---CEE--Eee-C
Confidence 468999999999988 455544 137888888877654 445688887 9999874 332 555 6
Q ss_pred CHHHHHHHHH
Q psy9102 199 SVENLESFLT 208 (277)
Q Consensus 199 ~~~~l~~fi~ 208 (277)
+.+.|.++++
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 8888888763
No 184
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.30 E-value=7.3e-07 Score=68.24 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=27.0
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++..+|+|||+||++|++..|.+++++++|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~ 79 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF 79 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 456799999999999999999999999864
No 185
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.28 E-value=8e-07 Score=67.32 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
++.++|+|||+||++|+++.|.+.++.++
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~ 53 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVR 53 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHH
Confidence 58999999999999999999999987653
No 186
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.27 E-value=3.2e-06 Score=59.58 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcC-CC-CcccCCCCCCHHHHHHHHHHH
Q psy9102 6 TNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE-DG-KKYAMKDEFSVENLESFLTKV 81 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~-~~-~~y~~~g~~~~~~i~~fi~~~ 81 (277)
.....++|.++|..+|+++.|+++...+. .+.++++. +. +++|++. ++ ..| +|+.+.++|.+||..+
T Consensus 29 ~~~~~~~f~~~A~~~r~~~~F~~~~~~~~---~~~~~~~~---~~-i~l~~~~~~~~~~y--~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 29 ESEEYKTFEKVAESLRDDYGFGHTSDKEV---AKKLKVKP---GS-VVLFKPFEEEPVEY--DGEFTEESLVEFIKDN 97 (97)
T ss_pred CcHHHHHHHHHHHhcccCCeEEEEChHHH---HHHcCCCC---Cc-eEEeCCcccCCccC--CCCCCHHHHHHHHHhC
Confidence 34678999999999999999999998877 77788774 44 8888874 44 779 9999999999999753
No 187
>KOG0913|consensus
Probab=98.26 E-value=4.2e-07 Score=72.29 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=83.8
Q ss_pred CCeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCC-cceEEEecccccchhhhccCcccCCCCC
Q psy9102 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFAD-KFTFAISAKDDFQHELNEFGFDYVPSDK 179 (277)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~~~~~ 179 (277)
+.+..++.+|+..+.. ..+++.|++|||+.|+.+ .+.+...|.-=.+ .+.++.||++.++.+.-.|-+.. +
T Consensus 24 s~~~~~~eenw~~~l~---gewmi~~~ap~~psc~~~-~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta----L 95 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT---GEWMIEFGAPWCPSCSDL-IPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA----L 95 (248)
T ss_pred ceeEEecccchhhhhc---hHHHHHhcCCCCccccch-HHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe----c
Confidence 3678888888887542 479999999999999998 6888877765444 38899999999999988888987 9
Q ss_pred CeEEEEcCCCceeeecCCCCHHHHHHHHHHHh
Q psy9102 180 PLVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211 (277)
Q Consensus 180 P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~ 211 (277)
|+|+-.. +|..-+|.|.++.++++.|+..-.
T Consensus 96 ptIYHvk-DGeFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 96 PTIYHVK-DGEFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred ceEEEee-ccccccccCcccchhHHHHHHhhh
Confidence 9997666 455778899999999999997644
No 188
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.25 E-value=8.3e-07 Score=64.58 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=29.1
Q ss_pred HHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 240 FDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 240 f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
|.+.+ ++++.++|.||++||++|+.+.|.+++++..
T Consensus 15 ~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~ 50 (113)
T cd02975 15 FFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSEL 50 (113)
T ss_pred HHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHh
Confidence 43433 3356788999999999999999999999865
No 189
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.22 E-value=1.3e-06 Score=63.58 Aligned_cols=29 Identities=34% Similarity=0.670 Sum_probs=26.8
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
++.++|.||++||++|++..|.++++++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~ 49 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARA 49 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHH
Confidence 68999999999999999999999998764
No 190
>PHA02125 thioredoxin-like protein
Probab=98.22 E-value=1.2e-06 Score=58.80 Aligned_cols=23 Identities=35% Similarity=0.856 Sum_probs=21.2
Q ss_pred EEEEECCCCHHHhhhhHHHHHHH
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVG 274 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la 274 (277)
+|+||+|||++|+++.|.|++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~ 24 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE 24 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh
Confidence 68999999999999999998775
No 191
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.20 E-value=5.5e-06 Score=59.30 Aligned_cols=67 Identities=21% Similarity=0.487 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEc-------CCC-CcccCCCCCCHHHHHH
Q psy9102 5 GTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRA-------EDG-KKYAMKDEFSVENLES 76 (277)
Q Consensus 5 ~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~-------~~~-~~y~~~g~~~~~~i~~ 76 (277)
......++|.++|..+|+++.|+++...+. .+.+++ . +. +++|+| +++ ..| +|+++.++|.+
T Consensus 29 ~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~---~~~~~~-~---~~-ivl~~p~~~~~k~de~~~~y--~g~~~~~~l~~ 98 (104)
T cd03069 29 EDSKLLSEFLKAADTLRESFRFAHTSDKQL---LEKYGY-G---EG-VVLFRPPRLSNKFEDSSVKF--DGDLDSSKIKK 98 (104)
T ss_pred CCchHHHHHHHHHHhhhhcCEEEEEChHHH---HHhcCC-C---Cc-eEEEechhhhcccCcccccc--cCcCCHHHHHH
Confidence 345788999999999999999999999988 788888 4 55 899954 344 668 99999999999
Q ss_pred HHHHH
Q psy9102 77 FLTKV 81 (277)
Q Consensus 77 fi~~~ 81 (277)
||..+
T Consensus 99 fi~~~ 103 (104)
T cd03069 99 FIREN 103 (104)
T ss_pred HHHhh
Confidence 99875
No 192
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.20 E-value=9.2e-06 Score=54.55 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=52.6
Q ss_pred ecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecC-CCCHHHHHH
Q psy9102 127 YAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKD-EFSVENLES 205 (277)
Q Consensus 127 ~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g-~~~~~~l~~ 205 (277)
++++|+.|..+ ...+.+++..+. +.+-.+|....+.+ .+||+.+ +|++++ + | ...+.| ..+.++|..
T Consensus 6 ~~~~C~~C~~~-~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~----vPalvI-n--g-~~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 6 FSPGCPYCPEL-VQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMS----VPALVI-N--G-KVVFVGRVPSKEELKE 73 (76)
T ss_dssp ECSSCTTHHHH-HHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SS----SSEEEE-T--T-EEEEESS--HHHHHHH
T ss_pred eCCCCCCcHHH-HHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCC----CCEEEE-C--C-EEEEEecCCCHHHHHH
Confidence 67789999988 588889888884 66677777655555 9999998 999966 3 3 456778 778889988
Q ss_pred HHH
Q psy9102 206 FLT 208 (277)
Q Consensus 206 fi~ 208 (277)
||+
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 193
>KOG2501|consensus
Probab=98.19 E-value=3e-06 Score=63.91 Aligned_cols=71 Identities=21% Similarity=0.363 Sum_probs=51.8
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-----ceEEEeccccc-----------------------chhhhcc
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-----FTFAISAKDDF-----------------------QHELNEF 170 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-----i~~~~vd~~~~-----------------------~~~~~~~ 170 (277)
++.+.++|.|.||++|+.+ .|.+.++.++.++. |.|+.-|-+.. .+++..|
T Consensus 33 gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDF-TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CcEEEEEEEEEECCchhhC-CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4889999999999999999 57777776666554 44444443321 2456788
Q ss_pred CcccCCCCCCeEEEEcCCCceeee
Q psy9102 171 GFDYVPSDKPLVFVRAEDGKKYAM 194 (277)
Q Consensus 171 ~i~~~~~~~P~i~~~~~~~~~~~~ 194 (277)
++.. +|++.+.+++|....-
T Consensus 112 ~v~~----iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 112 EVKG----IPALVILKPDGTVVTE 131 (157)
T ss_pred ccCc----CceeEEecCCCCEehH
Confidence 8988 9999998888865543
No 194
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.19 E-value=2.1e-06 Score=63.62 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=24.8
Q ss_pred HHHHhhcCCCcEEEEEECCCCHHHhhhhHHHH
Q psy9102 240 FDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYE 271 (277)
Q Consensus 240 f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~ 271 (277)
+++...++.++++|.|||+||++|+++.|.+.
T Consensus 6 ~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~ 37 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQPGCPYCDKLKRDYL 37 (125)
T ss_pred HHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhc
Confidence 33344343389999999999999999998774
No 195
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.18 E-value=7.8e-06 Score=60.22 Aligned_cols=73 Identities=26% Similarity=0.435 Sum_probs=53.9
Q ss_pred CCccEEEEEecC-CChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc---------------------cchhhhccCccc
Q psy9102 118 NEKDVLVEFYAP-WCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD---------------------FQHELNEFGFDY 174 (277)
Q Consensus 118 ~~~~~~v~F~~~-~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~---------------------~~~~~~~~~i~~ 174 (277)
.+++++|.||+. ||+.|...+ +.+.++.++|+.+ +.++.|..+. ...+.+.|++..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l-~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAEL-PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHH-HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccch-hHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 458999999999 999999884 8899999998854 7777776542 234566777771
Q ss_pred C--CCCCCeEEEEcCCCce
Q psy9102 175 V--PSDKPLVFVRAEDGKK 191 (277)
Q Consensus 175 ~--~~~~P~i~~~~~~~~~ 191 (277)
. ...+|++++++++|+.
T Consensus 103 ~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTTSEESEEEEEEETTSBE
T ss_pred ccCCceEeEEEEECCCCEE
Confidence 0 0138999888887753
No 196
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.16 E-value=3.2e-06 Score=58.33 Aligned_cols=37 Identities=49% Similarity=1.160 Sum_probs=32.1
Q ss_pred cHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 239 ~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
+|++.+.+. +.++|.||++||++|+++.|.++++++.
T Consensus 2 ~~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~ 38 (93)
T cd02947 2 EFEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE 38 (93)
T ss_pred chHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH
Confidence 567777665 8899999999999999999999998764
No 197
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.15 E-value=1.8e-06 Score=58.03 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=23.1
Q ss_pred EEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
|.||++||++|+.+.|.++++++++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~ 27 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEEL 27 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHc
Confidence 7899999999999999999998764
No 198
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.15 E-value=8.2e-06 Score=51.82 Aligned_cols=60 Identities=25% Similarity=0.461 Sum_probs=47.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhh---ccCcccCCCCCCeEEEEcCC
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELN---EFGFDYVPSDKPLVFVRAED 188 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~~~~~P~i~~~~~~ 188 (277)
++.|++.||+.|..+ .+.+.++ ......+.++.++++....... .+++.. +|++++++.+
T Consensus 1 l~~~~~~~c~~c~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQAL-RPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGG----VPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhh-hhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCcc----ccEEEEEeCC
Confidence 478999999999998 5788777 4444559999999988776554 677777 9999888865
No 199
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.14 E-value=1.4e-05 Score=64.73 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=63.4
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccc---------ccchhhhccCcccCCCCCCeEEEEcCCC
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKD---------DFQHELNEFGFDYVPSDKPLVFVRAEDG 189 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~---------~~~~~~~~~~i~~~~~~~P~i~~~~~~~ 189 (277)
++.-|++||.+.|+.|..+ .+.+..++++|.=.+..+.+|.. .+...++.+||.. +|++++.+.++
T Consensus 120 ~~~gL~~F~~~~C~~C~~~-~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~----~Pal~Lv~~~~ 194 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQ-APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV----TPALFLVNPNT 194 (215)
T ss_pred hCeEEEEEEcCCCchhHHH-HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc----CCEEEEEECCC
Confidence 4678999999999999999 69999999999644555555532 2456778899987 99998777655
Q ss_pred -ceeee-cCCCCHHHHHHH
Q psy9102 190 -KKYAM-KDEFSVENLESF 206 (277)
Q Consensus 190 -~~~~~-~g~~~~~~l~~f 206 (277)
+.++. .|.++.++|.+-
T Consensus 195 ~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CeEEEEeeecCCHHHHHHh
Confidence 45544 488888888763
No 200
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.7e-05 Score=59.26 Aligned_cols=92 Identities=16% Similarity=0.279 Sum_probs=70.0
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHHH---HHHhhcCCcceEEEecccc----------------cchhhhccCcccCCC
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRIL---KVAKGFADKFTFAISAKDD----------------FQHELNEFGFDYVPS 177 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~~---~la~~~~~~i~~~~vd~~~----------------~~~~~~~~~i~~~~~ 177 (277)
..++-.+++|.++.|..|.++ ...+. ++.+-+.+++.++.++++. ..++++.|++++
T Consensus 40 ~~~Kylllmfes~~C~yC~~~-KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs--- 115 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERF-KKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS--- 115 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHH-HHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc---
Confidence 345789999999999999998 33333 5666677778888887653 236889999998
Q ss_pred CCCeEEEEcCCCc-eeeecCCCCHHHHHHHHHHHhcC
Q psy9102 178 DKPLVFVRAEDGK-KYAMKDEFSVENLESFLTKVVAG 213 (277)
Q Consensus 178 ~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~~~~ 213 (277)
.|++++++++|+ .+...|-+.++++..-++-..+|
T Consensus 116 -tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 116 -TPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred -CceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999998876 56778989998877666555444
No 201
>PTZ00062 glutaredoxin; Provisional
Probab=98.11 E-value=2.6e-05 Score=62.48 Aligned_cols=139 Identities=10% Similarity=0.103 Sum_probs=82.8
Q ss_pred chhhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcE-EEEEcCCC-CcccCCCCCCHHHHHHHHHHH
Q psy9102 4 TGTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPL-VFVRAEDG-KKYAMKDEFSVENLESFLTKV 81 (277)
Q Consensus 4 ~~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~-~~~~~~~~-~~y~~~g~~~~~~i~~fi~~~ 81 (277)
+++.-+...+.++|+++ .++.|+.++.+ |+|.+ .|+ ++|+++.. .++ .| .+...|.+++..+
T Consensus 30 ~~C~~m~~vl~~l~~~~-~~~~F~~V~~d--------~~V~~----vPtfv~~~~g~~i~r~--~G-~~~~~~~~~~~~~ 93 (204)
T PTZ00062 30 PEYEQLMDVCNALVEDF-PSLEFYVVNLA--------DANNE----YGVFEFYQNSQLINSL--EG-CNTSTLVSFIRGW 93 (204)
T ss_pred cchHHHHHHHHHHHHHC-CCcEEEEEccc--------cCccc----ceEEEEEECCEEEeee--eC-CCHHHHHHHHHHH
Confidence 34677889999999999 78999999977 89996 465 44553333 555 54 5688899999887
Q ss_pred hcCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCccEEEEEe----cCCChhhhhhhHHHHHHHHhhcCCcceEEE
Q psy9102 82 VAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFY----APWCGHCTNYWRNRILKVAKGFADKFTFAI 157 (277)
Q Consensus 82 ~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~F~----~~~c~~c~~~~~~~~~~la~~~~~~i~~~~ 157 (277)
....... . ..+...+++ ++ .+++|+-- .|+|+.|+++ ...|.+. .+.+..
T Consensus 94 ~~~~~~~-------------~----~~~~v~~li-~~-~~Vvvf~Kg~~~~p~C~~C~~~-k~~L~~~------~i~y~~ 147 (204)
T PTZ00062 94 AQKGSSE-------------D----TVEKIERLI-RN-HKILLFMKGSKTFPFCRFSNAV-VNMLNSS------GVKYET 147 (204)
T ss_pred cCCCCHH-------------H----HHHHHHHHH-hc-CCEEEEEccCCCCCCChhHHHH-HHHHHHc------CCCEEE
Confidence 6542211 0 011122222 22 34444332 2789999987 4555542 366677
Q ss_pred ecccccchhhhccCcccCCCCCCeEEE
Q psy9102 158 SAKDDFQHELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 158 vd~~~~~~~~~~~~i~~~~~~~P~i~~ 184 (277)
+|+.+.+...+.+.-....+.+|.+++
T Consensus 148 ~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 148 YNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred EEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 787766544322211111123788776
No 202
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.10 E-value=1.6e-05 Score=60.00 Aligned_cols=82 Identities=17% Similarity=0.108 Sum_probs=56.1
Q ss_pred CccEEEEEe-cCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc---------------------cchhhhccCcccC
Q psy9102 119 EKDVLVEFY-APWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD---------------------FQHELNEFGFDYV 175 (277)
Q Consensus 119 ~~~~~v~F~-~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~---------------------~~~~~~~~~i~~~ 175 (277)
+++++|.|| +.||+.|...+ +.+.++.++++++ +.++.|..+. ...+.+.||+..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~-~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~- 100 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEA-CDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG- 100 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHH-HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc-
Confidence 578999999 58899999884 7888888888653 6666555432 234556677765
Q ss_pred CCCC---------CeEEEEcCCCc-eeeecCCCCHHHHHH
Q psy9102 176 PSDK---------PLVFVRAEDGK-KYAMKDEFSVENLES 205 (277)
Q Consensus 176 ~~~~---------P~i~~~~~~~~-~~~~~g~~~~~~l~~ 205 (277)
. |++++++++|+ .+.+.|....+.+.+
T Consensus 101 ---~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 101 ---EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred ---ccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 4 78888887775 445666555444443
No 203
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.07 E-value=3.8e-06 Score=62.88 Aligned_cols=29 Identities=41% Similarity=0.692 Sum_probs=26.5
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
++.++|.||++||++|++..|.+++++++
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~ 45 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEK 45 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHH
Confidence 58899999999999999999999988764
No 204
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.04 E-value=1.3e-05 Score=57.53 Aligned_cols=67 Identities=12% Similarity=0.225 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEc-------CCC-CcccCCCC-CCHHH-HH
Q psy9102 6 TNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRA-------EDG-KKYAMKDE-FSVEN-LE 75 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~-------~~~-~~y~~~g~-~~~~~-i~ 75 (277)
.....++|.++|..+|+++.|+++...+. .+.+++.. +. +++|+| +++ ..| +|. .+.++ |+
T Consensus 31 ~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~---~~~~~~~~---~~-vvl~rp~~~~~k~e~~~~~~--~~~~~~~~~~~~ 101 (107)
T cd03068 31 EDPAYQLYQDAANSLREDYKFHHTFDSEI---FKSLKVSP---GQ-LVVFQPEKFQSKYEPKSHVL--NKKDSTSEDELK 101 (107)
T ss_pred CCHHHHHHHHHHHhcccCCEEEEEChHHH---HHhcCCCC---Cc-eEEECcHHHhhhcCcceeee--eccccchHHHHH
Confidence 44678999999999999999999999877 77888885 33 888854 445 778 777 67756 99
Q ss_pred HHHHHH
Q psy9102 76 SFLTKV 81 (277)
Q Consensus 76 ~fi~~~ 81 (277)
+||.++
T Consensus 102 ~f~~~~ 107 (107)
T cd03068 102 DFFKEH 107 (107)
T ss_pred HHHhcC
Confidence 999764
No 205
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.04 E-value=1.2e-05 Score=61.55 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=51.3
Q ss_pred ecCCccEEEEEecCCChhhhhhhHHHHH--HHHhhcCCcceEEEecccccchhhhcc--------CcccCCCCCCeEEEE
Q psy9102 116 TNNEKDVLVEFYAPWCGHCTNYWRNRIL--KVAKGFADKFTFAISAKDDFQHELNEF--------GFDYVPSDKPLVFVR 185 (277)
Q Consensus 116 ~~~~~~~~v~F~~~~c~~c~~~~~~~~~--~la~~~~~~i~~~~vd~~~~~~~~~~~--------~i~~~~~~~P~i~~~ 185 (277)
...+|+++|.++.+||..|..|-+..|. ++|..++..+.-+.||.++.+++...| |..+ .|+.+|.
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gG----wPl~vfl 109 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGG----WPLTVFL 109 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS-------SSEEEEE
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCC----CCceEEE
Confidence 4567999999999999999998445665 688888888888999999988887776 5555 9999998
Q ss_pred cCCCcee
Q psy9102 186 AEDGKKY 192 (277)
Q Consensus 186 ~~~~~~~ 192 (277)
.++++.+
T Consensus 110 tPdg~p~ 116 (163)
T PF03190_consen 110 TPDGKPF 116 (163)
T ss_dssp -TTS-EE
T ss_pred CCCCCee
Confidence 8888754
No 206
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.03 E-value=0.0001 Score=68.01 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=90.8
Q ss_pred CcEEEEEcC--C-CCcccCCCCCCHHHHHHHHHHHhcCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCcc-EEEE
Q psy9102 50 KPLVFVRAE--D-GKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKD-VLVE 125 (277)
Q Consensus 50 ~P~~~~~~~--~-~~~y~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~v~ 125 (277)
.|.+.+..+ . |.+| .|-..-.++..||.....-.-... .+.+.....+ ..-+++ .+..
T Consensus 61 ~p~~~~~~~~~~~~i~f--~g~P~g~Ef~s~i~~i~~~~~~~~----~l~~~~~~~i------------~~~~~~~~i~~ 122 (517)
T PRK15317 61 KPSFSITRPGEDTGVRF--AGIPMGHEFTSLVLALLQVGGHPP----KLDQEVIEQI------------KALDGDFHFET 122 (517)
T ss_pred CCEEEEEcCCccceEEE--EecCccHHHHHHHHHHHHhcCCCC----CCCHHHHHHH------------HhcCCCeEEEE
Confidence 575555432 1 2777 887788889999988764321110 0222211112 222334 5888
Q ss_pred EecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHH
Q psy9102 126 FYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLES 205 (277)
Q Consensus 126 F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~ 205 (277)
|++++|++|... ...+.+++.... .|.+-.+|...++++++.|++.+ +|++++ + + ...+.|..+.+++.+
T Consensus 123 fv~~~Cp~Cp~~-v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~----VP~~~i-~--~-~~~~~g~~~~~~~~~ 192 (517)
T PRK15317 123 YVSLSCHNCPDV-VQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMA----VPTVFL-N--G-EEFGQGRMTLEEILA 192 (517)
T ss_pred EEcCCCCCcHHH-HHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcc----cCEEEE-C--C-cEEEecCCCHHHHHH
Confidence 999999999988 478888888655 59999999999999999999998 999987 3 2 234668888887777
Q ss_pred HHHH
Q psy9102 206 FLTK 209 (277)
Q Consensus 206 fi~~ 209 (277)
.+..
T Consensus 193 ~~~~ 196 (517)
T PRK15317 193 KLDT 196 (517)
T ss_pred HHhc
Confidence 7654
No 207
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.03 E-value=4.2e-05 Score=63.25 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=69.0
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc---------chhhhccCcccCCCCCCeEEEEcCC-
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF---------QHELNEFGFDYVPSDKPLVFVRAED- 188 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~---------~~~~~~~~i~~~~~~~P~i~~~~~~- 188 (277)
++.-+++||.+.|+.|.++ .+.+..++++|.=.+..+.+|..-. ...++.+|++. +|++++.+.+
T Consensus 150 ~~~gL~fFy~~~C~~C~~~-apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~----~Pal~Lv~~~t 224 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKM-APVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY----FPALYLVNPKS 224 (256)
T ss_pred hceeEEEEECCCCchhHHH-HHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc----CceEEEEECCC
Confidence 3578999999999999999 6999999999986666666665422 33678899988 9999777755
Q ss_pred Cceeee-cCCCCHHHHHHHHHHHhc
Q psy9102 189 GKKYAM-KDEFSVENLESFLTKVVA 212 (277)
Q Consensus 189 ~~~~~~-~g~~~~~~l~~fi~~~~~ 212 (277)
++.++. .|.++.++|.+-+...+.
T Consensus 225 ~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHHh
Confidence 445554 489999999887776654
No 208
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.02 E-value=4.5e-05 Score=59.87 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=61.0
Q ss_pred CCccEEEEEe-cCCChhhhhhhHHHHHHHHhhcCCc-ceEEEeccccc----------------------------chhh
Q psy9102 118 NEKDVLVEFY-APWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDF----------------------------QHEL 167 (277)
Q Consensus 118 ~~~~~~v~F~-~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~----------------------------~~~~ 167 (277)
.++.++|.|| +.||+.|...+ +.|.+++++|.+. +.++.|..+.. ..+.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l-~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEI-IAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHH-HHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 3578999999 89999999884 8999999998753 55555554321 1234
Q ss_pred hccCcccCC--CCCCeEEEEcCCCce-eeecC----CCCHHHHHHHHHHH
Q psy9102 168 NEFGFDYVP--SDKPLVFVRAEDGKK-YAMKD----EFSVENLESFLTKV 210 (277)
Q Consensus 168 ~~~~i~~~~--~~~P~i~~~~~~~~~-~~~~g----~~~~~~l~~fi~~~ 210 (277)
+.||+.... ...|+.++++++|+. +.+.+ ..+.+++.+.|+..
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 456664211 136789888888763 33322 34667788888765
No 209
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.01 E-value=5.7e-06 Score=61.75 Aligned_cols=29 Identities=41% Similarity=0.692 Sum_probs=26.2
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
++.++|.||++||++|+++.|.+.++.++
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~ 46 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEK 46 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHH
Confidence 57899999999999999999999988654
No 210
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.99 E-value=1.8e-05 Score=53.00 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=43.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhc-----cCcccCCCCCCeEEEEcCCCceeeecCC
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE-----FGFDYVPSDKPLVFVRAEDGKKYAMKDE 197 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~-----~~i~~~~~~~P~i~~~~~~~~~~~~~g~ 197 (277)
++.|+++||++|+++ .+.+.++. +.+-.+|+++....... +++.. +|+++ +++ |... ..
T Consensus 2 v~ly~~~~C~~C~~~-~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~----vP~i~-~~~-g~~l---~~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQL-MRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMT----VPTVK-FAD-GSFL---TN 65 (77)
T ss_pred EEEEECCCChhHHHH-HHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCce----eCEEE-ECC-CeEe---cC
Confidence 578999999999998 56666543 34446777666554444 36766 99985 443 3222 14
Q ss_pred CCHHHHHHHHH
Q psy9102 198 FSVENLESFLT 208 (277)
Q Consensus 198 ~~~~~l~~fi~ 208 (277)
.+..++.+.++
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 55556665553
No 211
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.99 E-value=3.2e-05 Score=55.07 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEc-CCC-CcccCCCCCCHHHHHHHHHHHh
Q psy9102 5 GTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRA-EDG-KKYAMKDEFSVENLESFLTKVV 82 (277)
Q Consensus 5 ~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~-~~~-~~y~~~g~~~~~~i~~fi~~~~ 82 (277)
......++|.++|..+|+++.|+++...+. .+.+++.. +. ++++++ +++ ..|. .|..+.+.|.+||..+.
T Consensus 30 ~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~---~~~~~~~~---~~-i~l~~~~~e~~~~y~-~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 30 EDSEHYKAFEEAAEEFHPYIKFFATFDSKV---AKKLGLKM---NE-VDFYEPFMEEPVTIP-DKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCHHHHHHHHHHHhhhcCCEEEEECcHHH---HHHcCCCC---Cc-EEEeCCCCCCCcccC-CCCCCHHHHHHHHHHhc
Confidence 345778899999999999999999999988 77888874 34 777765 455 6674 56789999999998753
No 212
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.97 E-value=2.8e-05 Score=53.59 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHhcCCceEEEEEcccc--hHHHhhhcCCCCCCCCCcEEEEEcCCC---CcccCCCCCCHHHHHHHHH
Q psy9102 5 GTNYWRNRILKVAKGFADKFTFAISAKDD--FQHELNEFGFDYVPSDKPLVFVRAEDG---KKYAMKDEFSVENLESFLT 79 (277)
Q Consensus 5 ~~~~~~~~f~~~A~~~~~~~~f~~~~~~~--~~~~~~~~~v~~~~~~~P~~~~~~~~~---~~y~~~g~~~~~~i~~fi~ 79 (277)
+....++.|.++|+..+|.-..+++||++ ...||+++.|.+..+|.|..+.+-.+| ..| +...+..+|..|+.
T Consensus 32 ~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdY--dR~~t~kSmv~Flr 109 (112)
T cd03067 32 SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEY--NRQLTFKSMVAFLR 109 (112)
T ss_pred hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCccccc--cchhhHHHHHHHhh
Confidence 34677899999999999999999999997 677999999995433455445443355 778 88899999999997
Q ss_pred HH
Q psy9102 80 KV 81 (277)
Q Consensus 80 ~~ 81 (277)
+.
T Consensus 110 DP 111 (112)
T cd03067 110 DP 111 (112)
T ss_pred CC
Confidence 64
No 213
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.97 E-value=9.2e-06 Score=60.27 Aligned_cols=30 Identities=27% Similarity=0.727 Sum_probs=27.3
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|+||++||++|++..|.++++++.+
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~ 54 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG 54 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999998653
No 214
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.96 E-value=9.7e-06 Score=73.61 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=29.5
Q ss_pred hcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 245 TNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 245 ~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.+.+++++|+|||+||++|+++.|.+++|++++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~ 85 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDA 85 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999998753
No 215
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.96 E-value=0.00018 Score=66.43 Aligned_cols=133 Identities=13% Similarity=0.165 Sum_probs=90.7
Q ss_pred CcEEEEEc-CC--CCcccCCCCCCHHHHHHHHHHHhcCCCCccccCCCCCCCCCCCeEEeecccceeeeecCCcc-EEEE
Q psy9102 50 KPLVFVRA-ED--GKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKD-VLVE 125 (277)
Q Consensus 50 ~P~~~~~~-~~--~~~y~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~v~ 125 (277)
.|.+.+.. ++ |.+| .|-..-.++..||.....-.-.... +.+..... +..-+++ .+-.
T Consensus 62 ~p~~~~~~~~~~~~i~f--~g~P~g~Ef~s~i~~i~~~~~~~~~----l~~~~~~~------------~~~~~~~~~i~~ 123 (515)
T TIGR03140 62 KPSFTILRDGADTGIRF--AGIPGGHEFTSLVLAILQVGGHGPK----LDEGIIDR------------IRRLNGPLHFET 123 (515)
T ss_pred CCeEEEecCCcccceEE--EecCCcHHHHHHHHHHHHhcCCCCC----CCHHHHHH------------HHhcCCCeEEEE
Confidence 46555443 22 2777 7877888889999887643222200 22111111 2222233 5788
Q ss_pred EecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHH
Q psy9102 126 FYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLES 205 (277)
Q Consensus 126 F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~ 205 (277)
|.++.|++|... ...+.+++.... .|..-.+|...+++++++|++.+ +|++++-+ ...+.|..+.+++.+
T Consensus 124 f~~~~Cp~Cp~~-v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~----VP~~~i~~----~~~~~g~~~~~~~~~ 193 (515)
T TIGR03140 124 YVSLTCQNCPDV-VQALNQMALLNP-NISHTMIDGALFQDEVEALGIQG----VPAVFLNG----EEFHNGRMDLAELLE 193 (515)
T ss_pred EEeCCCCCCHHH-HHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcc----cCEEEECC----cEEEecCCCHHHHHH
Confidence 999999999988 478888888766 48898999999999999999998 99998732 234568888887777
Q ss_pred HHHHH
Q psy9102 206 FLTKV 210 (277)
Q Consensus 206 fi~~~ 210 (277)
.+...
T Consensus 194 ~l~~~ 198 (515)
T TIGR03140 194 KLEET 198 (515)
T ss_pred HHhhc
Confidence 66554
No 216
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.95 E-value=1.7e-05 Score=54.06 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=39.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccch-----hhhccCcccCCCCCCeEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH-----ELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~-----~~~~~~i~~~~~~~P~i~~ 184 (277)
++.|+++||++|+.+ .+.+.++. ..+.+.+..+|.+.... +.+.+|+.. +|++++
T Consensus 1 V~~f~~~~Cp~C~~~-~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~----vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKA-KEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRT----VPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHH-HHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCC----CCeEEE
Confidence 468999999999998 57777765 33446777777654432 445567776 999865
No 217
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.94 E-value=8.1e-05 Score=58.07 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=33.7
Q ss_pred CCccEEEEEecCC-ChhhhhhhHHHHHHHHhhcCCcceEEEeccc
Q psy9102 118 NEKDVLVEFYAPW-CGHCTNYWRNRILKVAKGFADKFTFAISAKD 161 (277)
Q Consensus 118 ~~~~~~v~F~~~~-c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~ 161 (277)
.+++++|.||+.| |++|...+ +.|.++++++. .+.++.|..+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~-~~l~~~~~~~~-~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSV-RKFNQEAAELD-NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHH-HHHHHHHHHcC-CcEEEEEeCC
Confidence 3578999999999 99999984 89999999885 3666656554
No 218
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.93 E-value=6.3e-05 Score=59.84 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=60.3
Q ss_pred CCccEEEEEe-cCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc-------------------------cchhhhcc
Q psy9102 118 NEKDVLVEFY-APWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD-------------------------FQHELNEF 170 (277)
Q Consensus 118 ~~~~~~v~F~-~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~-------------------------~~~~~~~~ 170 (277)
.+++++|.|| +.||+.|...+ +.|.++.++|+++ +.++.|..+. ...+++.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el-~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTEL-EDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHH-HHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 3578999999 99999999884 8888888888643 4444444321 22455677
Q ss_pred CcccCC--CCCCeEEEEcCCCcee-ee--c--CCCCHHHHHHHHHHH
Q psy9102 171 GFDYVP--SDKPLVFVRAEDGKKY-AM--K--DEFSVENLESFLTKV 210 (277)
Q Consensus 171 ~i~~~~--~~~P~i~~~~~~~~~~-~~--~--g~~~~~~l~~fi~~~ 210 (277)
|+.... ...|+.++++.+|++. .+ . .....+++.+.|+..
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 775211 1258889998887633 22 1 135777888877543
No 219
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.93 E-value=1.2e-05 Score=63.86 Aligned_cols=29 Identities=24% Similarity=0.658 Sum_probs=26.6
Q ss_pred CCCcEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 247 ~~~~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
.++.++|+||++||++|++..|.+.++++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~ 95 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSA 95 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998864
No 220
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.90 E-value=0.00011 Score=60.57 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=69.7
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc---------hhhhccCcccCCCCCCeEEEEcCCC
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ---------HELNEFGFDYVPSDKPLVFVRAEDG 189 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~---------~~~~~~~i~~~~~~~P~i~~~~~~~ 189 (277)
+..-|++||.+.|+.|.++ .+++..++++|.=.+.-+.+|..-.+ ..++.+|+.. +|++++.+.++
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~-aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~----~PAl~Lv~~~t 217 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQL-AQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY----FPALMLVDPKS 217 (248)
T ss_pred hcceEEEEECCCCchhHHH-HHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc----cceEEEEECCC
Confidence 3578999999999999999 69999999999876777777753322 2446789987 99998777654
Q ss_pred -ceeee-cCCCCHHHHHHHHHHHhcC
Q psy9102 190 -KKYAM-KDEFSVENLESFLTKVVAG 213 (277)
Q Consensus 190 -~~~~~-~g~~~~~~l~~fi~~~~~~ 213 (277)
+.++. .|.++.++|.+-+...+.+
T Consensus 218 ~~~~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 218 GSVRPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHHhc
Confidence 45544 4889999998888776653
No 221
>KOG2603|consensus
Probab=97.88 E-value=9.9e-05 Score=61.47 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=84.4
Q ss_pred CCCeEEeecccceeeeecCCc--cEEEEEecCC----ChhhhhhhHHHHHHHHhhcCC--------cceEEEecccccch
Q psy9102 100 SGPVKVAVAKNFDEVVTNNEK--DVLVEFYAPW----CGHCTNYWRNRILKVAKGFAD--------KFTFAISAKDDFQH 165 (277)
Q Consensus 100 ~~~i~~~~~~~~~~~~~~~~~--~~~v~F~~~~----c~~c~~~~~~~~~~la~~~~~--------~i~~~~vd~~~~~~ 165 (277)
..+|-.+++++|.+++....+ .++|+|.|.. |+-|++. ..++.-+|+.++. ++-|..||.++.++
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~-~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQA-EEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhH-HHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 467888999999999886555 4788888654 9999999 5899989887752 48899999999999
Q ss_pred hhhccCcccCCCCCCeEEEEc-CCCcee---eec---CCCCHHHHHHHHHHHhc
Q psy9102 166 ELNEFGFDYVPSDKPLVFVRA-EDGKKY---AMK---DEFSVENLESFLTKVVA 212 (277)
Q Consensus 166 ~~~~~~i~~~~~~~P~i~~~~-~~~~~~---~~~---g~~~~~~l~~fi~~~~~ 212 (277)
..+.+++.. +|+++++. +.+.+. .+. -....+++.+|+++..+
T Consensus 118 ~Fq~l~ln~----~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 118 VFQQLNLNN----VPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred HHHHhcccC----CCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 999999998 99999885 333322 111 13458899999998765
No 222
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.87 E-value=1.3e-05 Score=67.42 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=28.3
Q ss_pred CCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 247 ~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.++.+||.||++||++|+++.|++++++++|
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y 195 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY 195 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHc
Confidence 3678999999999999999999999999864
No 223
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.87 E-value=9.5e-05 Score=53.85 Aligned_cols=90 Identities=12% Similarity=0.026 Sum_probs=65.6
Q ss_pred cCCccEEEEEecC----CChhhhhhhHHHHHHHHhhcCCcceEEEeccccc--chhhhccCcccCCCCCCeEEEEc---C
Q psy9102 117 NNEKDVLVEFYAP----WCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF--QHELNEFGFDYVPSDKPLVFVRA---E 187 (277)
Q Consensus 117 ~~~~~~~v~F~~~----~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~~~~~P~i~~~~---~ 187 (277)
+..|.++|++|++ ||..|+..+.. .++.+-++.++.+...|++.. .+++..+++.. +|+++++. +
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~--~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~----~P~~~~l~~~~~ 88 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA--PEVIEYINTRMLFWACSVAKPEGYRVSQALRERT----YPFLAMIMLKDN 88 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC--HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCC----CCEEEEEEecCC
Confidence 4568999999999 88999765211 145555556677777887644 35778899988 99997773 2
Q ss_pred CCc-eeeecCCCCHHHHHHHHHHHhc
Q psy9102 188 DGK-KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 188 ~~~-~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
... ..+..|..++++|...++...+
T Consensus 89 ~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 89 RMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred ceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 222 4578899999999999887764
No 224
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.86 E-value=7e-05 Score=55.62 Aligned_cols=85 Identities=15% Similarity=0.323 Sum_probs=46.9
Q ss_pred ccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCC
Q psy9102 120 KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFS 199 (277)
Q Consensus 120 ~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~ 199 (277)
...++.|..+|||.|...+ |.+.++++.-.+ +.+-.+.-+++..+...|-..+ ...+|++++++.+++....-|+ -
T Consensus 42 ~~~ilvi~e~WCgD~~~~v-P~l~kiae~~p~-i~~~~i~rd~~~el~~~~lt~g-~~~IP~~I~~d~~~~~lg~wge-r 117 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNV-PVLAKIAEANPN-IEVRIILRDENKELMDQYLTNG-GRSIPTFIFLDKDGKELGRWGE-R 117 (129)
T ss_dssp -EEEEEE--TT-HHHHHHH-HHHHHHHHH-TT-EEEEEE-HHHHHHHTTTTTT-S-S--SSEEEEE-TT--EEEEEES-S
T ss_pred CcEEEEEECCCchhHHHHH-HHHHHHHHhCCC-CeEEEEEecCChhHHHHHHhCC-CeecCEEEEEcCCCCEeEEEcC-C
Confidence 4578889999999999995 999999998653 6666666666666665542211 1349999999877654432232 3
Q ss_pred HHHHHHHHH
Q psy9102 200 VENLESFLT 208 (277)
Q Consensus 200 ~~~l~~fi~ 208 (277)
+..+.+++.
T Consensus 118 P~~~~~~~~ 126 (129)
T PF14595_consen 118 PKEVQELVD 126 (129)
T ss_dssp -HHHH----
T ss_pred CHHHhhccc
Confidence 344444443
No 225
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.86 E-value=0.00012 Score=57.86 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=76.9
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEeccccc-----------chhhh-ccCcccCCCCCCeEEE
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDF-----------QHELN-EFGFDYVPSDKPLVFV 184 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~-----------~~~~~-~~~i~~~~~~~P~i~~ 184 (277)
.+++++|.|+|+||+.|+++ +.|.++.++|+++ +.++.+.|.+. ..+++ .+|++ +|.+.-
T Consensus 24 ~GKvvLVvf~AS~C~~~~q~--~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-----Fpv~~k 96 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQY--EQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-----FPMFSK 96 (183)
T ss_pred CCCEEEEEEEeCCCCCcHHH--HHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-----ceeEEE
Confidence 35899999999999999875 7999999999865 88888877431 23443 56765 775533
Q ss_pred EcCCCceeeecCCCCHHHHHHHHHHHhcCCCCCC---CCCCCCCCCCCCCeEecchhcHHHHhhcCCCcEEEEEECCCCH
Q psy9102 185 RAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPY---IKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCG 261 (277)
Q Consensus 185 ~~~~~~~~~~~g~~~~~~l~~fi~~~~~~~~~~~---~ks~~~p~~~~~~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~ 261 (277)
.+-+| .....|-+|+..-......+. ..........++....-..=||.+++-+.+. .+|..|+|...
T Consensus 97 ~dvnG--------~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G-~vv~r~~~~~~ 167 (183)
T PRK10606 97 IEVNG--------EGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDG-QVIQRFSPDMT 167 (183)
T ss_pred EccCC--------CCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCC-cEEEEECCCCC
Confidence 33332 222344555554332110000 0000000000000011234678888766443 56677778776
Q ss_pred HH-hhhhHHHHHH
Q psy9102 262 HC-KKLTPVYEEV 273 (277)
Q Consensus 262 ~c-~~~~p~~~~l 273 (277)
+- ..+.+.++++
T Consensus 168 p~~~~i~~~i~~~ 180 (183)
T PRK10606 168 PEDPIVMESIKLA 180 (183)
T ss_pred CCHHHHHHHHHHH
Confidence 53 2355555544
No 226
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.86 E-value=1.4e-05 Score=62.41 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=24.3
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+|.||++||++|++..|.+.+++++|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~ 98 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY 98 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc
Confidence 88899999999999999999999875
No 227
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.83 E-value=0.00029 Score=50.72 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=71.6
Q ss_pred CeEEeecccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHH-hhc--CCcceEEEecccc-----cchhhhccCcc
Q psy9102 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVA-KGF--ADKFTFAISAKDD-----FQHELNEFGFD 173 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la-~~~--~~~i~~~~vd~~~-----~~~~~~~~~i~ 173 (277)
....++.-+|++.|... +.++|.|=... +.-.+ +..|.++| +.. .+.+.++.|-+.. |.+++++|++.
T Consensus 5 G~v~LD~~tFdKvi~kf-~~~LVKFD~ay-PyGeK--hd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKF-KYVLVKFDVAY-PYGEK--HDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp TSEEESTTHHHHHGGGS-SEEEEEEEESS---CHH--HHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred ceeeccceehhheeccC-ceEEEEEeccC-CCcch--HHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 45678888999988655 88999995432 22222 46888888 333 2349999988764 45688999998
Q ss_pred cCCCCCCeEEEEcCC-Cceeee--cCCCCHHHHHHHHHHHh
Q psy9102 174 YVPSDKPLVFVRAED-GKKYAM--KDEFSVENLESFLTKVV 211 (277)
Q Consensus 174 ~~~~~~P~i~~~~~~-~~~~~~--~g~~~~~~l~~fi~~~~ 211 (277)
. +.+|.+.++.++ ....++ .|+++.++|+.|+....
T Consensus 81 k--e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 81 K--EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp C--CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred c--ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 7 679999777744 346666 88999999999998753
No 228
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.82 E-value=2.8e-05 Score=57.25 Aligned_cols=41 Identities=29% Similarity=0.589 Sum_probs=31.5
Q ss_pred cchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 235 AVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 235 l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
+.++.+.....+ ++.++|.||++||++|+.+.|.+.++++.
T Consensus 8 ~~g~~~~~~~~~-~k~~vl~F~~~~C~~C~~~~~~l~~~~~~ 48 (123)
T cd03011 8 LDGEQFDLESLS-GKPVLVYFWATWCPVCRFTSPTVNQLAAD 48 (123)
T ss_pred CCCCEeeHHHhC-CCEEEEEEECCcChhhhhhChHHHHHHhh
Confidence 344444444333 48999999999999999999999988764
No 229
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.80 E-value=1.8e-05 Score=51.60 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.6
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
++.|+++||++|+++.+.+++++..
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~ 27 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL 27 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh
Confidence 6789999999999999999999754
No 230
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.80 E-value=0.00013 Score=53.91 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHhcCC-ceEEEEEcccchHHHhhhcCCCCCCCCCc-EEEEEcCCC-CcccCCCCCCHHHHHHHHHHH
Q psy9102 5 GTNYWRNRILKVAKGFAD-KFTFAISAKDDFQHELNEFGFDYVPSDKP-LVFVRAEDG-KKYAMKDEFSVENLESFLTKV 81 (277)
Q Consensus 5 ~~~~~~~~f~~~A~~~~~-~~~f~~~~~~~~~~~~~~~~v~~~~~~~P-~~~~~~~~~-~~y~~~g~~~~~~i~~fi~~~ 81 (277)
|+....-.+.++|++|.+ ++.|+.+|.++.+.++.+|||.+ .| +++|++++- ... .|-.+.+++.+||..+
T Consensus 50 E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~s----iPTLl~FkdGk~v~~i--~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 50 EVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR----FPATLVFTGGNYRGVL--NGIHPWAELINLMRGL 123 (132)
T ss_pred ccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCcc----CCEEEEEECCEEEEEE--eCcCCHHHHHHHHHHH
Confidence 355667788999999974 59999999999999999999996 56 455553222 455 7888999999999988
Q ss_pred hcCC
Q psy9102 82 VAGE 85 (277)
Q Consensus 82 ~~~~ 85 (277)
+...
T Consensus 124 L~~~ 127 (132)
T PRK11509 124 VEPQ 127 (132)
T ss_pred hcCc
Confidence 8653
No 231
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.79 E-value=0.00011 Score=55.84 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=32.2
Q ss_pred ccEEEEE-ecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc
Q psy9102 120 KDVLVEF-YAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD 162 (277)
Q Consensus 120 ~~~~v~F-~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~ 162 (277)
++++|.| ++.||+.|+..+ +.+.++.+++++. +.++.|..+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~-~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYL-RALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHH-HHHHHHHHHHHhcCeEEEEEeCCC
Confidence 5565565 599999999984 8999999998643 7777777653
No 232
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.79 E-value=0.00012 Score=51.39 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=62.2
Q ss_pred ecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC-Cceeee
Q psy9102 116 TNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED-GKKYAM 194 (277)
Q Consensus 116 ~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~-~~~~~~ 194 (277)
......++|-|+..++... ...|.++|+.+++.+.|+.+. +..+.+.+++. .|++.++.+. .....|
T Consensus 14 ~~~~~~~vvg~f~~~~~~~----~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-----~~~i~l~~~~~~~~~~y 81 (97)
T cd02981 14 LDKDDVVVVGFFKDEESEE----YKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-----PGSVVLFKPFEEEPVEY 81 (97)
T ss_pred hccCCeEEEEEECCCCcHH----HHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-----CCceEEeCCcccCCccC
Confidence 3455788888998888743 368889999999889998877 44666667665 6888777643 445668
Q ss_pred cCCCCHHHHHHHHHH
Q psy9102 195 KDEFSVENLESFLTK 209 (277)
Q Consensus 195 ~g~~~~~~l~~fi~~ 209 (277)
.|..+.+.|.+||..
T Consensus 82 ~g~~~~~~l~~fi~~ 96 (97)
T cd02981 82 DGEFTEESLVEFIKD 96 (97)
T ss_pred CCCCCHHHHHHHHHh
Confidence 898899999999864
No 233
>KOG1672|consensus
Probab=97.78 E-value=9.5e-05 Score=57.34 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=78.4
Q ss_pred CCeEEee-cccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCC
Q psy9102 101 GPVKVAV-AKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDK 179 (277)
Q Consensus 101 ~~i~~~~-~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~ 179 (277)
+.+.++. ...|-..+..+ .-|++.||-+.-..|+-| ...|+.||+.+-+ ..|+.||+...+=++.+++|+. +
T Consensus 66 G~y~ev~~Ekdf~~~~~kS-~kVVcHFY~~~f~RCKim-DkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkV----L 138 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKS-EKVVCHFYRPEFFRCKIM-DKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKV----L 138 (211)
T ss_pred ceEEEeccHHHHHHHhhcC-ceEEEEEEcCCCcceehH-HHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeE----e
Confidence 4455554 56666666555 568899999999999998 7899999999988 8999999999888999999998 9
Q ss_pred CeEEEEcCCCceeeecC--------CCCHHHHHHHHH
Q psy9102 180 PLVFVRAEDGKKYAMKD--------EFSVENLESFLT 208 (277)
Q Consensus 180 P~i~~~~~~~~~~~~~g--------~~~~~~l~~fi~ 208 (277)
|+++++.++..+..+.| +++.+.|..-|-
T Consensus 139 P~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~ 175 (211)
T KOG1672|consen 139 PTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA 175 (211)
T ss_pred eeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence 99999987655544443 456666655543
No 234
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.77 E-value=0.00032 Score=64.80 Aligned_cols=125 Identities=10% Similarity=0.106 Sum_probs=82.9
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCC-ceeeecCC
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKDE 197 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~-~~~~~~g~ 197 (277)
.+++-+.++...|+.|..+ ...+++++.. .++|.+...+.. .. .|++.+...+. ...+|.|-
T Consensus 18 ~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~-s~~i~~~~~~~~-----------~~----~p~~~~~~~~~~~~i~f~g~ 80 (517)
T PRK15317 18 ERPIELVASLDDSEKSAEL-KELLEEIASL-SDKITVEEDSLD-----------VR----KPSFSITRPGEDTGVRFAGI 80 (517)
T ss_pred CCCEEEEEEeCCCchHHHH-HHHHHHHHHh-CCceEEEEccCC-----------CC----CCEEEEEcCCccceEEEEec
Confidence 3555555555579999998 5677776654 355666432211 22 89997765332 24688898
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhcHHHHhhcCCCc-EEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 198 FSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKD-VLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 198 ~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~f~~~v~~~~~~-~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
..-.++..||..++. -+ +.-..|++++.+.+ .+-+++ .+..|++|.|++|.+....++++|..
T Consensus 81 P~g~Ef~s~i~~i~~-------~~--------~~~~~l~~~~~~~i-~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 81 PMGHEFTSLVLALLQ-------VG--------GHPPKLDQEVIEQI-KALDGDFHFETYVSLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred CccHHHHHHHHHHHH-------hc--------CCCCCCCHHHHHHH-HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh
Confidence 888999999998875 11 12234555555444 333344 57799999999999999999988753
No 235
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.77 E-value=0.00014 Score=49.41 Aligned_cols=78 Identities=21% Similarity=0.413 Sum_probs=57.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCC--ceeeecCCCCH
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG--KKYAMKDEFSV 200 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~--~~~~~~g~~~~ 200 (277)
+++|+.+.|.-|..+ ...+.+++.... +.+-.||+++++.+..+||.. +|.+.+-+..+ ......+.++.
T Consensus 2 l~l~~k~~C~LC~~a-~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~~-----IPVl~~~~~~~~~~~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEA-KEILEEVAAEFP--FELEEVDIDEDPELFEKYGYR-----IPVLHIDGIRQFKEQEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHH-HHHHHHCCTTST--CEEEEEETTTTHHHHHHSCTS-----TSEEEETT-GGGCTSEEEESSB-H
T ss_pred EEEEcCCCCChHHHH-HHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcCC-----CCEEEEcCcccccccceeCCCCCH
Confidence 678999999999988 566666544433 888899999999999999986 99987755221 13344568999
Q ss_pred HHHHHHHH
Q psy9102 201 ENLESFLT 208 (277)
Q Consensus 201 ~~l~~fi~ 208 (277)
+.|.+||+
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999985
No 236
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.76 E-value=0.00027 Score=56.05 Aligned_cols=93 Identities=11% Similarity=0.005 Sum_probs=63.4
Q ss_pred CCccEEEEEe-cCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc-------------------------cchhhhcc
Q psy9102 118 NEKDVLVEFY-APWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD-------------------------FQHELNEF 170 (277)
Q Consensus 118 ~~~~~~v~F~-~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~-------------------------~~~~~~~~ 170 (277)
.++++++.|| +.||+.|...+ +.|.++.++|.+. +.++.|..+. ...+++.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el-~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTEL-GDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHH-HHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 3578999999 99999999885 7888888888643 4444444332 23566778
Q ss_pred CcccCCCCC--CeEEEEcCCCcee-ee----cCCCCHHHHHHHHHHHh
Q psy9102 171 GFDYVPSDK--PLVFVRAEDGKKY-AM----KDEFSVENLESFLTKVV 211 (277)
Q Consensus 171 ~i~~~~~~~--P~i~~~~~~~~~~-~~----~g~~~~~~l~~fi~~~~ 211 (277)
|+.....+. |+.++++++|++. .+ ...++.+++.+.|+.+-
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 874211225 9999999888632 21 22468889988887654
No 237
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.76 E-value=3e-05 Score=57.44 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=27.7
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|.||++||++|++..|.++++.++|
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~ 52 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKY 52 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHc
Confidence 579999999999999999999999998865
No 238
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.74 E-value=3.5e-05 Score=60.50 Aligned_cols=29 Identities=31% Similarity=0.778 Sum_probs=26.5
Q ss_pred CCCcEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 247 ~~~~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
.++.++|.||++||++|+++.|.++++++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~ 90 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAK 90 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998865
No 239
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.71 E-value=0.0003 Score=56.67 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=61.6
Q ss_pred CccEEE-EEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc---------------------------cchhhhc
Q psy9102 119 EKDVLV-EFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD---------------------------FQHELNE 169 (277)
Q Consensus 119 ~~~~~v-~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~---------------------------~~~~~~~ 169 (277)
++.+++ .|++.||+.|...+ +.|.++.++|+++ +.++.|.++. ...+++.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El-~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEF-IAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHH-HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 455555 57899999999884 7888888888643 5555544431 1235566
Q ss_pred cCcccCC--CCCCeEEEEcCCCcee-e----ecCCCCHHHHHHHHHHHhc
Q psy9102 170 FGFDYVP--SDKPLVFVRAEDGKKY-A----MKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 170 ~~i~~~~--~~~P~i~~~~~~~~~~-~----~~g~~~~~~l~~fi~~~~~ 212 (277)
||+.... ..+|++++++++|++. . ..+.++.+++...|+.+..
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 6763100 1379999999888642 1 2346899999999887654
No 240
>KOG3414|consensus
Probab=97.69 E-value=0.00043 Score=49.76 Aligned_cols=93 Identities=13% Similarity=0.220 Sum_probs=72.3
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeE-EEEcCCCceeee--
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLV-FVRAEDGKKYAM-- 194 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i-~~~~~~~~~~~~-- 194 (277)
..+.+++.|...|.+.|.+| ...+.+++....+-..++.+|+++.+.+.+.|++.. .|++ +||++...+..+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~m-D~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~----p~tvmfFfn~kHmkiD~gt 96 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKM-DELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYD----PPTVMFFFNNKHMKIDLGT 96 (142)
T ss_pred cceEEEEEecCCCCchHhhH-HHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccC----CceEEEEEcCceEEEeeCC
Confidence 45789999999999999999 688889999999888888999999999999999997 7887 566654433322
Q ss_pred ------cCC-CCHHHHHHHHHHHhcCCC
Q psy9102 195 ------KDE-FSVENLESFLTKVVAGEV 215 (277)
Q Consensus 195 ------~g~-~~~~~l~~fi~~~~~~~~ 215 (277)
++. -+.+++++.++-...|..
T Consensus 97 gdn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 97 GDNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred CCCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 222 356678888877665543
No 241
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.68 E-value=0.00012 Score=50.24 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=52.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc----hhhhccC--cccCCCCCCeEEEEcCCCceeeec
Q psy9102 122 VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ----HELNEFG--FDYVPSDKPLVFVRAEDGKKYAMK 195 (277)
Q Consensus 122 ~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~----~~~~~~~--i~~~~~~~P~i~~~~~~~~~~~~~ 195 (277)
.++.|+.+||+.|+++ ...|.+++.++.+ +.+..+|++..+ .+....| ... +|+|++ + |+. -
T Consensus 2 ~v~iy~~~~C~~C~~a-~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~----vP~ifi-~--g~~---i 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRA-KELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVET----VPQIFV-D--QKH---I 69 (85)
T ss_pred EEEEEeCCCChhHHHH-HHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCc----CCEEEE-C--CEE---E
Confidence 4678999999999999 5888888877644 888888887643 3333344 244 999875 3 222 1
Q ss_pred CCCCHHHHHHHHHHHh
Q psy9102 196 DEFSVENLESFLTKVV 211 (277)
Q Consensus 196 g~~~~~~l~~fi~~~~ 211 (277)
-..++|.++++..+
T Consensus 70 --gg~~~~~~~~~~~~ 83 (85)
T PRK11200 70 --GGCTDFEAYVKENL 83 (85)
T ss_pred --cCHHHHHHHHHHhc
Confidence 24567888877665
No 242
>PRK15000 peroxidase; Provisional
Probab=97.67 E-value=0.00033 Score=56.24 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=62.1
Q ss_pred CCccEEEEEecC-CChhhhhhhHHHHHHHHhhcCCc-ceEEEeccccc----------------------------chhh
Q psy9102 118 NEKDVLVEFYAP-WCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDF----------------------------QHEL 167 (277)
Q Consensus 118 ~~~~~~v~F~~~-~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~----------------------------~~~~ 167 (277)
.++++++.||+. ||+.|...+ +.|.+++++|+++ +.++.|.++.. ..++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El-~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSEL-IAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHH-HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 467999999995 899999984 8899999998753 55555544421 1344
Q ss_pred hccCcccCC--CCCCeEEEEcCCCcee-eecC----CCCHHHHHHHHHHHh
Q psy9102 168 NEFGFDYVP--SDKPLVFVRAEDGKKY-AMKD----EFSVENLESFLTKVV 211 (277)
Q Consensus 168 ~~~~i~~~~--~~~P~i~~~~~~~~~~-~~~g----~~~~~~l~~fi~~~~ 211 (277)
+.||+.... ..+|+.++++++|+.. .+.+ .++.+++.+.++.+.
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 456665100 1388999999888633 2222 468888888887643
No 243
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.66 E-value=0.00044 Score=53.06 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=32.6
Q ss_pred CCccEEEEEecC-CChhhhhhhHHHHHHHHhhcCCc-ceEEEeccc
Q psy9102 118 NEKDVLVEFYAP-WCGHCTNYWRNRILKVAKGFADK-FTFAISAKD 161 (277)
Q Consensus 118 ~~~~~~v~F~~~-~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~ 161 (277)
.+++++|.||+. ||+.|... .+.+.++.++++++ +.++.|..+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~-~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQ-ACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHH-HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457899999976 68889987 37888888888654 767666654
No 244
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.66 E-value=0.00024 Score=51.70 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=43.6
Q ss_pred CCccEEEEEec-------CCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc-------hhhh--ccCcccCCCCCCe
Q psy9102 118 NEKDVLVEFYA-------PWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ-------HELN--EFGFDYVPSDKPL 181 (277)
Q Consensus 118 ~~~~~~v~F~~-------~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~-------~~~~--~~~i~~~~~~~P~ 181 (277)
.+++++|+|++ +||+.|... .|.+.+.-....+...++.|.+..-+ .+-. .+++++ +||
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~a-ep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~----IPT 92 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAA-EPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKG----IPT 92 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHH-HHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---S----SSE
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHH-HHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeee----cce
Confidence 44688888874 599999999 68888877776666888877764322 1222 588988 999
Q ss_pred EEEEcCC
Q psy9102 182 VFVRAED 188 (277)
Q Consensus 182 i~~~~~~ 188 (277)
++-+..+
T Consensus 93 Li~~~~~ 99 (119)
T PF06110_consen 93 LIRWETG 99 (119)
T ss_dssp EEECTSS
T ss_pred EEEECCC
Confidence 9988765
No 245
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.65 E-value=3.9e-05 Score=52.29 Aligned_cols=26 Identities=46% Similarity=0.802 Sum_probs=22.2
Q ss_pred hcCCCcEEEEEECCCCHHHhhhhHHH
Q psy9102 245 TNNEKDVLVEFYAPWCGHCKKLTPVY 270 (277)
Q Consensus 245 ~~~~~~~lV~f~apwC~~c~~~~p~~ 270 (277)
.+.++++||+|+++||++|+.|...+
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHT
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHH
Confidence 45579999999999999999986554
No 246
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.64 E-value=5.5e-05 Score=54.29 Aligned_cols=30 Identities=37% Similarity=0.781 Sum_probs=27.2
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|+||++||++|+...+.+.++.+++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~ 48 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEY 48 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHh
Confidence 689999999999999999999999987653
No 247
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.63 E-value=0.00038 Score=52.96 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=32.2
Q ss_pred ccEEEEEe-cCCChhhhhhhHHHHHHHHhhcCCc-ceEEEeccc
Q psy9102 120 KDVLVEFY-APWCGHCTNYWRNRILKVAKGFADK-FTFAISAKD 161 (277)
Q Consensus 120 ~~~~v~F~-~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~ 161 (277)
++++|.|| +.||+.|...+ +.+.++.++++++ +.++.|..+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~-~~l~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKEL-CALRDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHH-HHHHHHHHHHHhCCCEEEEecCC
Confidence 67788887 99999999884 8999999998743 666666543
No 248
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.62 E-value=0.0002 Score=49.45 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=70.1
Q ss_pred ccceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccc--cchhhhccCcccCCCCCCeEEEEc
Q psy9102 109 KNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDD--FQHELNEFGFDYVPSDKPLVFVRA 186 (277)
Q Consensus 109 ~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~~~~~P~i~~~~ 186 (277)
..|.+++ ...+.|+|+|..+.-..-..+ ..+.++|+..+|.-++++|||.. ...+|+++.+......-|..+..-
T Consensus 10 KdfKKLL-RTr~NVLvLy~ks~k~a~~~L--k~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 10 KDFKKLL-RTRNNVLVLYSKSAKSAEALL--KLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred HHHHHHH-hhcCcEEEEEecchhhHHHHH--HHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence 4566644 555789999987754444444 68999999999999999999986 567999999983112255554332
Q ss_pred CCCc-eeeecCCCCHHHHHHHHHH
Q psy9102 187 EDGK-KYAMKDEFSVENLESFLTK 209 (277)
Q Consensus 187 ~~~~-~~~~~g~~~~~~l~~fi~~ 209 (277)
.+|. --.|+...+..+|..|+++
T Consensus 87 KdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cCCCccccccchhhHHHHHHHhhC
Confidence 3444 3357778999999999875
No 249
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.62 E-value=6.7e-05 Score=59.76 Aligned_cols=30 Identities=30% Similarity=0.620 Sum_probs=26.7
Q ss_pred CCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 247 ~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
.+++++|.||++||++|++..|.+.++.+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~ 102 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARA 102 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHh
Confidence 357899999999999999999999988754
No 250
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.56 E-value=0.00022 Score=53.80 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=34.3
Q ss_pred CCccEEEEEecCCChh-hhhhhHHHHHHHHhhcCCc----ceEEEeccc
Q psy9102 118 NEKDVLVEFYAPWCGH-CTNYWRNRILKVAKGFADK----FTFAISAKD 161 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~-c~~~~~~~~~~la~~~~~~----i~~~~vd~~ 161 (277)
.+++++|.||++||++ |...+ +.+.++.++++++ +.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l-~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTL-ANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHH-HHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4579999999999998 99874 8899999888753 666666543
No 251
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.55 E-value=0.00034 Score=45.91 Aligned_cols=67 Identities=18% Similarity=0.379 Sum_probs=41.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhcc----CcccCCCCCCeEEEEcCCCceeeecCCC
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEF----GFDYVPSDKPLVFVRAEDGKKYAMKDEF 198 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~----~i~~~~~~~P~i~~~~~~~~~~~~~g~~ 198 (277)
++.|+++||++|..+ ...+.+. .+.+..+|++........+ +... +|++++.+ . .+. ..
T Consensus 2 v~l~~~~~c~~c~~~-~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~----vP~i~~~~---~--~i~-g~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKAT-KRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRS----VPVVVIGD---E--HLS-GF 64 (73)
T ss_pred EEEEeCCCChhHHHH-HHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcc----cCEEEECC---E--EEe-cC
Confidence 578999999999987 3555441 2666667776554433332 4555 99997622 1 233 36
Q ss_pred CHHHHHHH
Q psy9102 199 SVENLESF 206 (277)
Q Consensus 199 ~~~~l~~f 206 (277)
+.+.|+++
T Consensus 65 ~~~~l~~~ 72 (73)
T cd02976 65 RPDKLRAL 72 (73)
T ss_pred CHHHHHhh
Confidence 67777665
No 252
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.55 E-value=0.00011 Score=57.52 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=34.4
Q ss_pred CeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 231 ~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.+..++++.+.-... .++.++|.||++||++|++..+.+.+++++|
T Consensus 45 ~~~~~~g~~~~l~~~-~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~ 90 (173)
T PRK03147 45 VLTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKY 90 (173)
T ss_pred EeecCCCCEEeHHHc-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHh
Confidence 444556665532222 3578999999999999999999999998764
No 253
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.53 E-value=7.5e-05 Score=59.94 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=27.3
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|.|||+||++|++..|.++++.++|
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~ 68 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVF 68 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHH
Confidence 579999999999999999999999998764
No 254
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.51 E-value=0.00011 Score=55.79 Aligned_cols=30 Identities=43% Similarity=0.897 Sum_probs=27.0
Q ss_pred CCCcEEEEEECC-CCHHHhhhhHHHHHHHhh
Q psy9102 247 NEKDVLVEFYAP-WCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 247 ~~~~~lV~f~ap-wC~~c~~~~p~~~~la~~ 276 (277)
.++.++|.||++ ||++|+...|.+.++++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~ 57 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEK 57 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhh
Confidence 368899999999 999999999999999764
No 255
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.50 E-value=0.0001 Score=52.80 Aligned_cols=30 Identities=47% Similarity=1.026 Sum_probs=27.1
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|.||++||++|+.+.|.+.++++.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~ 61 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEY 61 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHh
Confidence 578899999999999999999999998764
No 256
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.50 E-value=0.00013 Score=53.92 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=24.9
Q ss_pred cHHHHh---hcCCCcEEEEEECCCCHHHhhhhHH
Q psy9102 239 NFDEVV---TNNEKDVLVEFYAPWCGHCKKLTPV 269 (277)
Q Consensus 239 ~f~~~v---~~~~~~~lV~f~apwC~~c~~~~p~ 269 (277)
+|++.+ .+.+|+++|.||+.||++|++|...
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKA 44 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHH
Confidence 455443 4568999999999999999999664
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.45 E-value=0.00011 Score=72.95 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=28.2
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|+|||+||++|++..|.+++++++|
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y 449 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKY 449 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHc
Confidence 689999999999999999999999999875
No 258
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.43 E-value=0.0011 Score=44.79 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC-CcccCCCCCCHHHHHHHHHHH
Q psy9102 6 TNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKDEFSVENLESFLTKV 81 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~-~~y~~~g~~~~~~i~~fi~~~ 81 (277)
++...+.+.++|+.++.++.+..+|..+.+.+++.+|+++ .|++++ +| ..+ .|..+.++|.+++...
T Consensus 14 C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~----vPt~~~---~g~~~~--~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 14 CPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMA----VPAIVI---NGDVEF--IGAPTKEELVEAIKKR 81 (82)
T ss_pred hHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCcc----CCEEEE---CCEEEE--ecCCCHHHHHHHHHhh
Confidence 4667888999999998889999999999999999999995 687776 44 556 7888999999998764
No 259
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.43 E-value=0.00014 Score=53.63 Aligned_cols=30 Identities=13% Similarity=0.426 Sum_probs=23.5
Q ss_pred hcHHHHhhcCCCcEEEEEECCCCHHHhhhhH
Q psy9102 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTP 268 (277)
Q Consensus 238 ~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p 268 (277)
+.+... .+.+|++||.|+|.||+.|+.|.+
T Consensus 6 eal~~A-k~~~KpVll~f~a~WC~~Ck~me~ 35 (124)
T cd02955 6 EAFEKA-RREDKPIFLSIGYSTCHWCHVMEH 35 (124)
T ss_pred HHHHHH-HHcCCeEEEEEccCCCHhHHHHHH
Confidence 334333 455789999999999999999965
No 260
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.43 E-value=0.001 Score=55.44 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=61.3
Q ss_pred CCccEEEEEe-cCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc----------------------------cchhh
Q psy9102 118 NEKDVLVEFY-APWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD----------------------------FQHEL 167 (277)
Q Consensus 118 ~~~~~~v~F~-~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~----------------------------~~~~~ 167 (277)
.++++++.|| +.||+.|...+ +.|.++.++|++. +.++.|.++. +..++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El-~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSEL-LGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHH-HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 3467888888 89999999885 8888888888643 4444333332 13456
Q ss_pred hccCcccC-CCCCCeEEEEcCCCcee-ee----cCCCCHHHHHHHHHHHh
Q psy9102 168 NEFGFDYV-PSDKPLVFVRAEDGKKY-AM----KDEFSVENLESFLTKVV 211 (277)
Q Consensus 168 ~~~~i~~~-~~~~P~i~~~~~~~~~~-~~----~g~~~~~~l~~fi~~~~ 211 (277)
+.||+... ....|+.++++++|++. .+ ...++.+++.+.|+.+.
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 67777410 01379999999888632 22 23568888888887654
No 261
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.43 E-value=0.00013 Score=59.94 Aligned_cols=30 Identities=23% Similarity=0.159 Sum_probs=27.5
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|+||++||++|+...|.+++|.++|
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~ 128 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKY 128 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHH
Confidence 589999999999999999999999998764
No 262
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.43 E-value=0.00099 Score=53.69 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=58.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc---------------------------cchhhhccCcc
Q psy9102 122 VLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD---------------------------FQHELNEFGFD 173 (277)
Q Consensus 122 ~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~---------------------------~~~~~~~~~i~ 173 (277)
+++.|++.||+.|...+ +.|.+++++|++. +.++.|.++. ...+++.||+.
T Consensus 29 vlf~~pa~~cp~C~~el-~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 29 ILFSHPADFTPVCTTEL-GAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEecCCCCCcCHHHH-HHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45577899999999984 8899999998754 5555555442 12456677775
Q ss_pred cC----CCCCCeEEEEcCCCcee-eecC----CCCHHHHHHHHHHHh
Q psy9102 174 YV----PSDKPLVFVRAEDGKKY-AMKD----EFSVENLESFLTKVV 211 (277)
Q Consensus 174 ~~----~~~~P~i~~~~~~~~~~-~~~g----~~~~~~l~~fi~~~~ 211 (277)
.. +...|++++++++|+.. ...+ .++.+++.+.|+.+.
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 21 11245688888887632 2222 467788888887653
No 263
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.41 E-value=0.00038 Score=52.66 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=34.9
Q ss_pred CCccEEEEEecCC-ChhhhhhhHHHHHHHHhhcCCcceEEEeccc
Q psy9102 118 NEKDVLVEFYAPW-CGHCTNYWRNRILKVAKGFADKFTFAISAKD 161 (277)
Q Consensus 118 ~~~~~~v~F~~~~-c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~ 161 (277)
.++++++.||+.| |++|+..+ +.|.++.+++++ +.++.|..+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~-~~l~~~~~~~~~-~~vi~Is~d 67 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQT-KRFNKEAAKLDN-TVVLTISAD 67 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHH-HHHHHHHHhcCC-CEEEEEECC
Confidence 3578999999999 69999984 899999999875 777777765
No 264
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.40 E-value=0.00014 Score=55.87 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=26.8
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|.|+|+||++|++-.|.+.++.++|
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~ 51 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHREL 51 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHH
Confidence 578999999999999999999999987764
No 265
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.39 E-value=0.00094 Score=50.13 Aligned_cols=43 Identities=23% Similarity=0.229 Sum_probs=33.9
Q ss_pred CCccEEEEEe-cCCChhhhhhhHHHHHHHHhhcCC-cceEEEeccc
Q psy9102 118 NEKDVLVEFY-APWCGHCTNYWRNRILKVAKGFAD-KFTFAISAKD 161 (277)
Q Consensus 118 ~~~~~~v~F~-~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~ 161 (277)
.+++++|.|| +.||+.|... .+.+.++.++++. .+.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~-~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTE-LCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4688999999 7899999998 4899999988853 3666666654
No 266
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.38 E-value=0.00039 Score=47.76 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=48.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc----hhhhccCc--ccCCCCCCeEEEEcCCCceeeecC
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ----HELNEFGF--DYVPSDKPLVFVRAEDGKKYAMKD 196 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~----~~~~~~~i--~~~~~~~P~i~~~~~~~~~~~~~g 196 (277)
++.|+.+||++|.++ ...|.++..++.+ +.+..+|++... .+....|- .. +|++++ ++ +. -
T Consensus 2 V~vys~~~Cp~C~~a-k~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~t----VP~ifi-~g--~~---i- 68 (86)
T TIGR02183 2 VVIFGRPGCPYCVRA-KQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVET----VPQIFV-DE--KH---V- 68 (86)
T ss_pred EEEEeCCCCccHHHH-HHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCC----cCeEEE-CC--EE---e-
Confidence 678999999999998 5777776655444 677777776432 34444553 34 999965 32 11 2
Q ss_pred CCCHHHHHHHHHHHh
Q psy9102 197 EFSVENLESFLTKVV 211 (277)
Q Consensus 197 ~~~~~~l~~fi~~~~ 211 (277)
-..++|.+++++..
T Consensus 69 -gG~~dl~~~~~~~~ 82 (86)
T TIGR02183 69 -GGCTDFEQLVKENF 82 (86)
T ss_pred -cCHHHHHHHHHhcc
Confidence 23468888877654
No 267
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.37 E-value=0.0024 Score=59.02 Aligned_cols=126 Identities=11% Similarity=0.092 Sum_probs=81.9
Q ss_pred ccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCC-ceeeecCCC
Q psy9102 120 KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKDEF 198 (277)
Q Consensus 120 ~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~-~~~~~~g~~ 198 (277)
+++-+.++...|+.|..+ ...+++++.. .++|.+...+.+ ... .|++.+..++. ...+|.|-.
T Consensus 19 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~-s~ki~~~~~~~~----------~~~----~p~~~~~~~~~~~~i~f~g~P 82 (515)
T TIGR03140 19 NPVTLVLSAGSHEKSKEL-LELLDEIASL-SDKISLTQNTAD----------TLR----KPSFTILRDGADTGIRFAGIP 82 (515)
T ss_pred CCEEEEEEeCCCchhHHH-HHHHHHHHHh-CCCeEEEEecCC----------cCC----CCeEEEecCCcccceEEEecC
Confidence 455444444468999988 5666676554 456766443311 123 89997764332 246888988
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 199 SVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 199 ~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
.-.++..||..++. -| +.-..|++++.+.+-.-.+...+-.|++|-|++|.+....+.+++..
T Consensus 83 ~g~Ef~s~i~~i~~-------~~--------~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~ 145 (515)
T TIGR03140 83 GGHEFTSLVLAILQ-------VG--------GHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL 145 (515)
T ss_pred CcHHHHHHHHHHHH-------hc--------CCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 88899999998875 11 12234555555544322233457899999999999999888888753
No 268
>PLN02412 probable glutathione peroxidase
Probab=97.35 E-value=0.00017 Score=56.20 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=27.1
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|+||++||++|++..|.+.++.++|
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~ 58 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKY 58 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 588999999999999999899999998764
No 269
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.35 E-value=0.00024 Score=66.18 Aligned_cols=35 Identities=26% Similarity=0.690 Sum_probs=27.8
Q ss_pred chhcHHHHhh---cCCCcEEEEEECCCCHHHhhhhHHH
Q psy9102 236 VAKNFDEVVT---NNEKDVLVEFYAPWCGHCKKLTPVY 270 (277)
Q Consensus 236 ~~~~f~~~v~---~~~~~~lV~f~apwC~~c~~~~p~~ 270 (277)
+.+.+++.+. +.+++++|+|||+||++|+.+.+..
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~ 496 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYT 496 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHh
Confidence 4566777664 3468999999999999999998764
No 270
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.33 E-value=0.00016 Score=48.22 Aligned_cols=25 Identities=24% Similarity=0.797 Sum_probs=22.2
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
++.|+++||++|+++.+.|.+++..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~ 26 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAA 26 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCc
Confidence 5789999999999999999987654
No 271
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.26 E-value=0.0015 Score=52.98 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=60.2
Q ss_pred CccE-EEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc---------------------------cchhhhc
Q psy9102 119 EKDV-LVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD---------------------------FQHELNE 169 (277)
Q Consensus 119 ~~~~-~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~---------------------------~~~~~~~ 169 (277)
++++ ++.|++.||+.|...+ +.|.++..+|+.. +.++.|.++. ...+++.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El-~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEF-VEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHH-HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4554 5678899999999884 7899999888643 5555555442 1235566
Q ss_pred cCcccCC---CCCCeEEEEcCCCcee-e--e--cCCCCHHHHHHHHHHH
Q psy9102 170 FGFDYVP---SDKPLVFVRAEDGKKY-A--M--KDEFSVENLESFLTKV 210 (277)
Q Consensus 170 ~~i~~~~---~~~P~i~~~~~~~~~~-~--~--~g~~~~~~l~~fi~~~ 210 (277)
||+.... ...|++++++++|++. . + ...++.+++.+.|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 7763100 1379999999888632 1 1 2246788888888765
No 272
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.25 E-value=0.002 Score=53.63 Aligned_cols=83 Identities=17% Similarity=0.340 Sum_probs=57.0
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecc-----c--------------------------------
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAK-----D-------------------------------- 161 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~-----~-------------------------------- 161 (277)
.+.+++.|+.+.|++|++++ +.+.++.+. +++.+..+.. +
T Consensus 117 ak~~I~vFtDp~CpyC~kl~-~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFW-QQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCeEEEEEECCCChhHHHHH-HHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 45789999999999999994 666654443 2233222210 0
Q ss_pred -------------ccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHH
Q psy9102 162 -------------DFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLT 208 (277)
Q Consensus 162 -------------~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~ 208 (277)
++..+.+.+|+++ .|++++.+++|......|-...++|.+.+.
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~G----TPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANA----TPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCC----CCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 0112556789988 999999987787667788888888887763
No 273
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.22 E-value=0.0031 Score=45.52 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=49.7
Q ss_pred HHHHHHHHH-Hh--cCCceEEEEEcccc-----hHHHhhhcCCCCCCCCCc-EEEEEcC-CC-CcccCCCCCCHHHHHHH
Q psy9102 9 WRNRILKVA-KG--FADKFTFAISAKDD-----FQHELNEFGFDYVPSDKP-LVFVRAE-DG-KKYAMKDEFSVENLESF 77 (277)
Q Consensus 9 ~~~~f~~~A-~~--~~~~~~f~~~~~~~-----~~~~~~~~~v~~~~~~~P-~~~~~~~-~~-~~y~~~g~~~~~~i~~f 77 (277)
-+++|.++| +. -.+++.++.+-.++ ..+|.++|||... .+| +.+|..+ ++ ..|+.+|+++.++|..|
T Consensus 37 Khd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke--~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~f 114 (126)
T PF07912_consen 37 KHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE--DFPVIYLFVGDKEEPVRYPFDGDVTADNLQRF 114 (126)
T ss_dssp HHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC--C-SEEEEEESSTTSEEEE-TCS-S-HHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc--cCCEEEEecCCCCCCccCCccCCccHHHHHHH
Confidence 356788888 33 34679998887765 4678999999885 689 4555532 23 77777899999999999
Q ss_pred HHHHhc
Q psy9102 78 LTKVVA 83 (277)
Q Consensus 78 i~~~~~ 83 (277)
+..+..
T Consensus 115 vk~~t~ 120 (126)
T PF07912_consen 115 VKSNTG 120 (126)
T ss_dssp HHHTSS
T ss_pred HHhCCC
Confidence 998864
No 274
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.18 E-value=0.0067 Score=42.50 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=69.3
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc--ceEEEecccccchhh----hccCcccCCCCCCeEEEEc---CC
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK--FTFAISAKDDFQHEL----NEFGFDYVPSDKPLVFVRA---ED 188 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~--i~~~~vd~~~~~~~~----~~~~i~~~~~~~P~i~~~~---~~ 188 (277)
.+..+++.|-.+..+...+++ +.+.++|+++.+. +.|+.||-+..+-+. +.|+|.-. -|.|-+.+ ++
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl-~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~---~PqIGVV~vtdad 94 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFL-EILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLF---RPQIGVVNVTDAD 94 (120)
T ss_pred cCCceEEEEeccCCccHHHHH-HHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccC---CCceeeEeccccc
Confidence 346788999988888888884 8999999998864 999999999988765 56888752 57775554 44
Q ss_pred CceeeecCC---CCHHHHHHHHHHHh
Q psy9102 189 GKKYAMKDE---FSVENLESFLTKVV 211 (277)
Q Consensus 189 ~~~~~~~g~---~~~~~l~~fi~~~~ 211 (277)
+..+...+. .+.++|.+||++.+
T Consensus 95 SvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 95 SVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ceeEecccccccCcHHHHHHHHHhhC
Confidence 545666553 78899999998764
No 275
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.18 E-value=0.0017 Score=41.08 Aligned_cols=51 Identities=18% Similarity=0.293 Sum_probs=34.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchh----hhccCcccCCCCCCeEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHE----LNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~~~~~P~i~~ 184 (277)
++.|+.+||++|+.. ...|.+ . .+.+..+|++..+.. .+..|... +|++++
T Consensus 1 V~vy~~~~C~~C~~~-~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~----~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKA-KEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRT----VPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHH-HHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSS----SSEEEE
T ss_pred cEEEEcCCCcCHHHH-HHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCc----cCEEEE
Confidence 578999999999987 454433 2 266777777765432 23347777 999987
No 276
>PRK13189 peroxiredoxin; Provisional
Probab=97.15 E-value=0.0026 Score=51.99 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=60.0
Q ss_pred CCccEE-EEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc---------------------------cchhhh
Q psy9102 118 NEKDVL-VEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD---------------------------FQHELN 168 (277)
Q Consensus 118 ~~~~~~-v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~---------------------------~~~~~~ 168 (277)
.+++++ +.|++.||+.|...+ +.|.+++++|++. +.++.|.++. ...+++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl-~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEF-VAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHH-HHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 345454 466799999999884 7888888888643 4444444331 123556
Q ss_pred ccCcccC---CCCCCeEEEEcCCCcee-e----ecCCCCHHHHHHHHHHHh
Q psy9102 169 EFGFDYV---PSDKPLVFVRAEDGKKY-A----MKDEFSVENLESFLTKVV 211 (277)
Q Consensus 169 ~~~i~~~---~~~~P~i~~~~~~~~~~-~----~~g~~~~~~l~~fi~~~~ 211 (277)
.||+... ...+|++++++++|++. . ....++.+++...|+.+.
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 6776520 12478899999888642 1 224567888888887654
No 277
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.14 E-value=0.00036 Score=54.91 Aligned_cols=28 Identities=11% Similarity=0.028 Sum_probs=26.5
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
+|.++|+|||.||++|++-.|.+++|+.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~ 86 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKA 86 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHH
Confidence 7899999999999999999999999975
No 278
>KOG3425|consensus
Probab=97.12 E-value=0.0026 Score=45.51 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=47.2
Q ss_pred ccEEEEEec--------CCChhhhhhhHHHHHHHHhhcCCcceEEEecccccch-------hhhccCc-ccCCCCCCeEE
Q psy9102 120 KDVLVEFYA--------PWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH-------ELNEFGF-DYVPSDKPLVF 183 (277)
Q Consensus 120 ~~~~v~F~~--------~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~-------~~~~~~i-~~~~~~~P~i~ 183 (277)
+.++|+|++ +|||.|.+. +|.+.+.-+....++.|+.|++.+-+. +....++ +. +||++
T Consensus 26 ~~ifvlF~gskd~~tGqSWCPdCV~A-EPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~----vPTLl 100 (128)
T KOG3425|consen 26 KTIFVLFLGSKDDTTGQSWCPDCVAA-EPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTA----VPTLL 100 (128)
T ss_pred ceEEEEEecccCCCCCCcCCchHHHh-hHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceee----cceee
Confidence 347777763 689999999 799999888888889999999875432 3344455 44 99997
Q ss_pred EEcC
Q psy9102 184 VRAE 187 (277)
Q Consensus 184 ~~~~ 187 (277)
=+++
T Consensus 101 rw~~ 104 (128)
T KOG3425|consen 101 RWKR 104 (128)
T ss_pred EEcC
Confidence 7764
No 279
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.10 E-value=0.0042 Score=42.06 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=49.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhh---ccCcccCCCCCCeEEEEcCCCceeeecCCCC
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELN---EFGFDYVPSDKPLVFVRAEDGKKYAMKDEFS 199 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~ 199 (277)
+..|+.+||++|... ...|.+ ++ +.|-.+|+++.+.... ..|... +|++++-+ . ... .++
T Consensus 3 v~lYt~~~Cp~C~~a-k~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g~~~----vPvv~i~~---~--~~~-Gf~ 65 (81)
T PRK10329 3 ITIYTRNDCVQCHAT-KRAMES-----RG-FDFEMINVDRVPEAAETLRAQGFRQ----LPVVIAGD---L--SWS-GFR 65 (81)
T ss_pred EEEEeCCCCHhHHHH-HHHHHH-----CC-CceEEEECCCCHHHHHHHHHcCCCC----cCEEEECC---E--EEe-cCC
Confidence 568999999999987 445433 23 8888888887665432 334444 99997622 1 233 589
Q ss_pred HHHHHHHHHHHhc
Q psy9102 200 VENLESFLTKVVA 212 (277)
Q Consensus 200 ~~~l~~fi~~~~~ 212 (277)
.+.|.+.+...+.
T Consensus 66 ~~~l~~~~~~~~~ 78 (81)
T PRK10329 66 PDMINRLHPAPHA 78 (81)
T ss_pred HHHHHHHHHhhhh
Confidence 9999998876653
No 280
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.09 E-value=0.003 Score=51.36 Aligned_cols=92 Identities=10% Similarity=0.116 Sum_probs=60.0
Q ss_pred CCccEEE-EEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEeccccc---------------------------chhhh
Q psy9102 118 NEKDVLV-EFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDF---------------------------QHELN 168 (277)
Q Consensus 118 ~~~~~~v-~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~---------------------------~~~~~ 168 (277)
.++++++ .|++.||+.|...+ +.|.+++.+|+.. +.++.|.++.. ..+++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl-~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEF-YSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHH-HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 3466555 66799999999985 8899999998643 55554444421 23445
Q ss_pred ccCcccC---CCCCCeEEEEcCCCceee-e----cCCCCHHHHHHHHHHH
Q psy9102 169 EFGFDYV---PSDKPLVFVRAEDGKKYA-M----KDEFSVENLESFLTKV 210 (277)
Q Consensus 169 ~~~i~~~---~~~~P~i~~~~~~~~~~~-~----~g~~~~~~l~~fi~~~ 210 (277)
.||+... ....|+.++++++|++.. . .-.++.+++...|+.+
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 6676310 123688899998886322 1 2246888988888765
No 281
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.05 E-value=0.0015 Score=44.07 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=35.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc-----hhhhccCcccCCCCCCeEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ-----HELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~~~~~P~i~~ 184 (277)
++.|+++||+.|+.+ ...+.++.- .+.+..++..... .+.+..|... +|++++
T Consensus 2 v~~y~~~~Cp~C~~~-~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~----~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRA-KSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRT----VPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHH-HHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCC----CCeEEE
Confidence 578999999999988 566666544 3556666665442 2334456666 999754
No 282
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.00 E-value=0.00067 Score=53.72 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=24.4
Q ss_pred CCcE-EEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDV-LVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~-lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.+ ++.++|+||++|++..|.++++.++|
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~ 70 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQY 70 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 4544 55669999999999999999998764
No 283
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.98 E-value=0.0031 Score=41.58 Aligned_cols=66 Identities=15% Similarity=0.319 Sum_probs=43.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhcc---CcccCCCCCCeEEEEcCCCceeeecCCCCH
Q psy9102 124 VEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEF---GFDYVPSDKPLVFVRAEDGKKYAMKDEFSV 200 (277)
Q Consensus 124 v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~ 200 (277)
..|+.++|+.|+.. ...|.+ ..+.+-.+|+++++.....+ |... +|++++-+ + . .-|..++
T Consensus 2 ~ly~~~~Cp~C~~a-k~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~----vP~v~~~g-~---~-~~~G~~~ 65 (72)
T TIGR02194 2 TVYSKNNCVQCKMT-KKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQ----VPVIVADG-D---L-SWSGFRP 65 (72)
T ss_pred EEEeCCCCHHHHHH-HHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcc----cCEEEECC-C---c-EEeccCH
Confidence 57889999999987 455543 23777788888766554443 6555 99986633 1 1 2334777
Q ss_pred HHHHH
Q psy9102 201 ENLES 205 (277)
Q Consensus 201 ~~l~~ 205 (277)
+.|.+
T Consensus 66 ~~~~~ 70 (72)
T TIGR02194 66 DKLKA 70 (72)
T ss_pred HHHHh
Confidence 77765
No 284
>KOG2501|consensus
Probab=96.93 E-value=0.00049 Score=52.08 Aligned_cols=28 Identities=36% Similarity=0.720 Sum_probs=24.5
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
++-+.++|-|-||++|++|.|++.++-.
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe 60 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYE 60 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHH
Confidence 4789999999999999999999877654
No 285
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.90 E-value=0.0061 Score=48.94 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=57.1
Q ss_pred CccEEEEEec-CCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccc----------------------------cchhhh
Q psy9102 119 EKDVLVEFYA-PWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDD----------------------------FQHELN 168 (277)
Q Consensus 119 ~~~~~v~F~~-~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~----------------------------~~~~~~ 168 (277)
+++++|.||+ .||+.|...+ ..+.+++++|++. +.++.|.++. ...+++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~-~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEI-IQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHH-HHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 5788889995 7799999874 7888888888754 5555555442 123556
Q ss_pred ccCcccCC--CCCCeEEEEcCCCcee-ee----cCCCCHHHHHHHHHHH
Q psy9102 169 EFGFDYVP--SDKPLVFVRAEDGKKY-AM----KDEFSVENLESFLTKV 210 (277)
Q Consensus 169 ~~~i~~~~--~~~P~i~~~~~~~~~~-~~----~g~~~~~~l~~fi~~~ 210 (277)
.||+.... ..+|+.++++++|+.. .. ...++.+++.+.|...
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 67774211 1368888899887632 21 1234555666655543
No 286
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.86 E-value=0.0013 Score=45.47 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=23.9
Q ss_pred EEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 251 VLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 251 ~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
.+..|++|||++|+.+.+.+++++..+
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~ 41 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLN 41 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHC
Confidence 567889999999999999999998753
No 287
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.82 E-value=0.0012 Score=49.70 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=27.1
Q ss_pred CCCcEEEEEECCCCHH-HhhhhHHHHHHHhhC
Q psy9102 247 NEKDVLVEFYAPWCGH-CKKLTPVYEEVGEKA 277 (277)
Q Consensus 247 ~~~~~lV~f~apwC~~-c~~~~p~~~~la~~~ 277 (277)
.++.++|.||++||++ |.+..+.++++...|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~ 52 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQL 52 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHh
Confidence 3578999999999998 999999999987654
No 288
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.82 E-value=0.0021 Score=47.76 Aligned_cols=40 Identities=18% Similarity=0.553 Sum_probs=25.7
Q ss_pred hhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 237 ~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
.+....+........++.|..+|||.|.+..|.+.++|+.
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~ 69 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEA 69 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHh
Confidence 3434433333445688889999999999999999999864
No 289
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.80 E-value=0.007 Score=49.79 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=54.7
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEe----------------------------------------
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAIS---------------------------------------- 158 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~v---------------------------------------- 158 (277)
++..++.|+.+.|++|+++ ++.+.++.+. + +.+..+
T Consensus 107 ~k~~I~vFtDp~CpyCkkl-~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKL-HEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCEEEEEEECCCChHHHHH-HHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 4678999999999999999 5777765431 1 222111
Q ss_pred ----cccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHHHH
Q psy9102 159 ----AKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 159 ----d~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 210 (277)
++.++..+++.+||++ .|++++-+ |+. ..|..+.+.|.++|+..
T Consensus 183 ~c~~~v~~~~~la~~lgi~g----TPtiv~~~--G~~--~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQG----TPAIVLSN--GTL--VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCcc----ccEEEEcC--CeE--eeCCCCHHHHHHHHHHc
Confidence 1112345678899988 99999544 333 37888999999998754
No 290
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.78 E-value=0.0081 Score=42.60 Aligned_cols=89 Identities=11% Similarity=0.121 Sum_probs=58.0
Q ss_pred cceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcC-C
Q psy9102 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE-D 188 (277)
Q Consensus 110 ~~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~-~ 188 (277)
+.+.++...+..++|-|+..--.. . ...|.++|..+++...|+... ...+...+++. .|++++++. +
T Consensus 10 ~~e~~~~~~~~~~Vvg~f~~~~~~---~-~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-----~~~i~l~~~~~ 77 (102)
T cd03066 10 ELQAFENIEDDIKLIGYFKSEDSE---H-YKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-----MNEVDFYEPFM 77 (102)
T ss_pred HHHHHhcccCCeEEEEEECCCCCH---H-HHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-----CCcEEEeCCCC
Confidence 344544313344445555443332 2 368889999998889997655 33556677775 788988864 3
Q ss_pred Cceeee-cCCCCHHHHHHHHHHH
Q psy9102 189 GKKYAM-KDEFSVENLESFLTKV 210 (277)
Q Consensus 189 ~~~~~~-~g~~~~~~l~~fi~~~ 210 (277)
.....| .|..+.+.|.+||...
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHh
Confidence 334457 7788999999999754
No 291
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.78 E-value=0.0017 Score=47.49 Aligned_cols=30 Identities=30% Similarity=0.689 Sum_probs=26.8
Q ss_pred CCCcEEEEEECC-CCHHHhhhhHHHHHHHhh
Q psy9102 247 NEKDVLVEFYAP-WCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 247 ~~~~~lV~f~ap-wC~~c~~~~p~~~~la~~ 276 (277)
.++.++|.||+. ||++|+...+.+.++..+
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~ 54 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKK 54 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhh
Confidence 358999999999 999999999999998765
No 292
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.76 E-value=0.0087 Score=42.38 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=56.2
Q ss_pred ccceeeeec-CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccch----hhhccCcccCCCCCCeEE
Q psy9102 109 KNFDEVVTN-NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH----ELNEFGFDYVPSDKPLVF 183 (277)
Q Consensus 109 ~~~~~~~~~-~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~~~~~P~i~ 183 (277)
++++.++.. .+++++++=++..|+-+...+ ..|++......+.+.++.+|+-+... ++..|||.. .-|.++
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~-~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H---eSPQ~i 83 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMAL-REFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH---ESPQVI 83 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHH-HHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-------SSEEE
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHH-HHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc---CCCcEE
Confidence 344444433 346777777899999999885 78888888887779999999987654 678899996 489998
Q ss_pred EEcCCCceeee-cCCCCHHHHH
Q psy9102 184 VRAEDGKKYAM-KDEFSVENLE 204 (277)
Q Consensus 184 ~~~~~~~~~~~-~g~~~~~~l~ 204 (277)
+++++.-++.- -..++.++|+
T Consensus 84 li~~g~~v~~aSH~~It~~~lk 105 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEALK 105 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH-
T ss_pred EEECCEEEEECccccCCHHhcC
Confidence 88865434432 2467777663
No 293
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.75 E-value=0.0089 Score=43.74 Aligned_cols=91 Identities=12% Similarity=0.230 Sum_probs=65.3
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCe-EE-EEcCCCce---
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPL-VF-VRAEDGKK--- 191 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~-i~-~~~~~~~~--- 191 (277)
..++.+++.|...|.+.|.++ ...+.++|.+.++-..++.+|.++.+.+.+.|.+. -|. ++ ||++....
T Consensus 18 e~drvvViRFG~d~d~~Cm~m-DeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-----dP~tvmFF~rnkhm~vD~ 91 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQM-DEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-----DPCTVMFFFRNKHMMVDF 91 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHH-HHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS------SSEEEEEEETTEEEEEES
T ss_pred cCceEEEEEeCCCCCccHHHH-HHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-----CCeEEEEEecCeEEEEEe
Confidence 356889999999999999999 68889999999988889999999999999999997 675 44 44533222
Q ss_pred -----eeecCCC-CHHHHHHHHHHHhcC
Q psy9102 192 -----YAMKDEF-SVENLESFLTKVVAG 213 (277)
Q Consensus 192 -----~~~~g~~-~~~~l~~fi~~~~~~ 213 (277)
...++.+ +.+++.+-++-...|
T Consensus 92 GtgnnnKin~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 92 GTGNNNKINWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp SSSSSSSBCS--SCHHHHHHHHHHHHHH
T ss_pred cCCCccEEEEEcCcHHHHHHHHHHHHHH
Confidence 2233323 467777777765443
No 294
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.70 E-value=0.001 Score=43.70 Aligned_cols=23 Identities=30% Similarity=0.765 Sum_probs=19.8
Q ss_pred EEEEECCCCHHHhhhhHHHHHHH
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVG 274 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la 274 (277)
+..|+++||++|+++.+.|++.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~ 24 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKG 24 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCC
Confidence 46899999999999999988753
No 295
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.69 E-value=0.0023 Score=48.50 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=23.3
Q ss_pred CcEEEEE-ECCCCHHHhhhhHHHHHHHhhC
Q psy9102 249 KDVLVEF-YAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 249 ~~~lV~f-~apwC~~c~~~~p~~~~la~~~ 277 (277)
+.++|.| +++||++|+...|.+.++.++|
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~ 53 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPEL 53 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHH
Confidence 5566655 5999999999999999987653
No 296
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.68 E-value=0.0044 Score=40.25 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=33.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhh----hccCcccCCCCCCeEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL----NEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~----~~~~i~~~~~~~P~i~~ 184 (277)
++.|+++||+.|+.+ ...|.+.. +.+..+|+....... +..|... +|++++
T Consensus 2 v~ly~~~~Cp~C~~~-~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~----~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRA-KRLLESLG------IEFEEIDILEDGELREELKELSGWPT----VPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHH-HHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCC----cCEEEE
Confidence 568899999999988 45555432 667777877655432 2234444 887754
No 297
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.67 E-value=0.0049 Score=41.49 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=35.5
Q ss_pred ccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc---hhhhccCcccCCCCCCeEEE
Q psy9102 120 KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ---HELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 120 ~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~~~~~P~i~~ 184 (277)
..-+++|+.+||+.|++. ...|.+. .+.+..+|++... .+....|... +|.+++
T Consensus 7 ~~~V~ly~~~~Cp~C~~a-k~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~----vP~i~i 63 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKA-KATLKEK------GYDFEEIPLGNDARGRSLRAVTGATT----VPQVFI 63 (79)
T ss_pred CCCEEEEECCCCHhHHHH-HHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCC----cCeEEE
Confidence 455778999999999988 4555432 2666667766542 2333456655 999965
No 298
>KOG3170|consensus
Probab=96.59 E-value=0.017 Score=45.29 Aligned_cols=123 Identities=17% Similarity=0.257 Sum_probs=81.9
Q ss_pred HHHHHHhcCCCCccccCCCCCCCCCCCeEEeecccceeeeec--CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcc
Q psy9102 76 SFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTN--NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKF 153 (277)
Q Consensus 76 ~fi~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i 153 (277)
.|++.+....+.+.-.. ......+.|..+++..|...|.. .+-+|+|..|...-+.|.-+ ...|..+|.+|.. +
T Consensus 68 rfLE~YR~kRl~E~r~~--~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll-~~~l~~la~kfp~-i 143 (240)
T KOG3170|consen 68 RFLEMYRIKRLAEWRAT--AEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALL-SHHLQSLACKFPQ-I 143 (240)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHH-HHHHHHHhhcCCc-c
Confidence 36666665544441111 11123577899999999988854 34578999999999999988 6899999999998 8
Q ss_pred eEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeee------cC-CCCHHHHHHHHHH
Q psy9102 154 TFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAM------KD-EFSVENLESFLTK 209 (277)
Q Consensus 154 ~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~------~g-~~~~~~l~~fi~~ 209 (277)
.|+.+-... . ...|-=. .+||+++|..+..+-.+ -| ..+.+++..++-+
T Consensus 144 KFVki~at~--c-IpNYPe~----nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 144 KFVKIPATT--C-IPNYPES----NLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eEEeccccc--c-cCCCccc----CCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 888766432 1 1223333 39999988765433222 22 4567788777754
No 299
>KOG0914|consensus
Probab=96.50 E-value=0.003 Score=50.10 Aligned_cols=48 Identities=29% Similarity=0.509 Sum_probs=38.7
Q ss_pred CCeEec-chhcHHHHh-hcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 230 GPVKVA-VAKNFDEVV-TNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 230 ~~v~~l-~~~~f~~~v-~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
..++.+ .++.+++.. .+....|+|.|||.|.+.|+.+.|.|.+|+..|
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~ky 173 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKY 173 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHh
Confidence 467777 456666555 445578999999999999999999999999875
No 300
>PHA03050 glutaredoxin; Provisional
Probab=96.50 E-value=0.0055 Score=43.96 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=33.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc-------chhhhccCcccCCCCCCeEEE
Q psy9102 122 VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF-------QHELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 122 ~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~-------~~~~~~~~i~~~~~~~P~i~~ 184 (277)
-++.|..+|||+|++. ...|.+..-+.. .+..+|+++. ..+.+.-|.+. +|+|++
T Consensus 14 ~V~vys~~~CPyC~~a-k~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~t----VP~IfI 75 (108)
T PHA03050 14 KVTIFVKFTCPFCRNA-LDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRT----VPRIFF 75 (108)
T ss_pred CEEEEECCCChHHHHH-HHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCC----cCEEEE
Confidence 4778999999999988 456555432222 3444555431 12334445555 999966
No 301
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.45 E-value=0.01 Score=47.52 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=48.8
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEe----------------------------------------
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAIS---------------------------------------- 158 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~v---------------------------------------- 158 (277)
.+..++.|+.+.|++|+++ .+.+.+. .+.+.+..+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~-~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKL-EKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHHH-HHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 4789999999999999998 4665541 111211111
Q ss_pred -----cccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHH
Q psy9102 159 -----AKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 159 -----d~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi 207 (277)
+++++..+++.+||.+ +|++++-+ |.. ..|..+.++|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~g----tPtii~~~--G~~--~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNG----TPTIVLAD--GRV--VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCc----ccEEEECC--CeE--ecCCCCHHHHHhhC
Confidence 1112335677889988 99998433 323 46777788887764
No 302
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.38 E-value=0.012 Score=38.85 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=34.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccch----hhhccCcccCCCCCCeEEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH----ELNEFGFDYVPSDKPLVFVR 185 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~~~~~P~i~~~ 185 (277)
++.|+.+||+.|+++ ...|.+ ..+.+..+|+.+.+. +.+..|-.. +|++++-
T Consensus 3 v~ly~~~~C~~C~ka-~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~----vP~v~i~ 58 (73)
T cd03027 3 VTIYSRLGCEDCTAV-RLFLRE------KGLPYVEINIDIFPERKAELEERTGSSV----VPQIFFN 58 (73)
T ss_pred EEEEecCCChhHHHH-HHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCC----cCEEEEC
Confidence 568899999999988 444444 236777788876654 333344444 8998663
No 303
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.38 E-value=0.0087 Score=42.22 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=31.5
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccch---h----hhccCcccCCCCCCeEEE
Q psy9102 121 DVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH---E----LNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 121 ~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~---~----~~~~~i~~~~~~~P~i~~ 184 (277)
.-++.|..+||++|.++ ...|.+. + +.+..+|++..+. + .+..|... +|.|++
T Consensus 8 ~~Vvvysk~~Cp~C~~a-k~~L~~~----~--i~~~~vdid~~~~~~~~~~~l~~~tg~~t----vP~Vfi 67 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVV-KRLLLTL----G--VNPAVHEIDKEPAGKDIENALSRLGCSPA----VPAVFV 67 (99)
T ss_pred CCEEEEECCCCHHHHHH-HHHHHHc----C--CCCEEEEcCCCccHHHHHHHHHHhcCCCC----cCeEEE
Confidence 34678999999999988 4555443 2 4444555554422 2 12234444 899854
No 304
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.35 E-value=0.0038 Score=48.65 Aligned_cols=30 Identities=10% Similarity=0.299 Sum_probs=26.9
Q ss_pred CCcEEEEEECCC-CHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPW-CGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apw-C~~c~~~~p~~~~la~~~ 277 (277)
++.++|.||+.| |++|.+..|.|++++++|
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~ 74 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAEL 74 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHc
Confidence 578999999999 999999999999988764
No 305
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.35 E-value=0.0036 Score=47.51 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=24.8
Q ss_pred CcEEEEEE-CCCCHHHhhhhHHHHHHHhhC
Q psy9102 249 KDVLVEFY-APWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 249 ~~~lV~f~-apwC~~c~~~~p~~~~la~~~ 277 (277)
+.++|.|| ++||+.|.+..|.++++.++|
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~ 58 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELF 58 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHH
Confidence 67888887 999999999999999887653
No 306
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.32 E-value=0.0081 Score=40.30 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=33.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhc----cCcccCCCCCCeEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE----FGFDYVPSDKPLVFV 184 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~----~~i~~~~~~~P~i~~ 184 (277)
++.|+.+||+.|.+. ...|.+. .+.+-.+|++..+...+. .|... +|++++
T Consensus 1 v~ly~~~~Cp~C~~a-~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~----vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRA-KALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRT----VPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHH-HHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCC----cCEEEE
Confidence 357899999999988 4555542 255666676665544333 35444 999855
No 307
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.29 E-value=0.013 Score=38.68 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=33.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhh----ccCcccCCCCCCeEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELN----EFGFDYVPSDKPLVFV 184 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~----~~~i~~~~~~~P~i~~ 184 (277)
+++|+.+||+.|... ...|.+. .+.+..+|++.++...+ ..|.. ..+|++++
T Consensus 2 i~ly~~~~Cp~C~~a-k~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~---~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRA-KALLDKK------GVDYEEIDVDGDPALREEMINRSGGR---RTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHH-HHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCC---CccCEEEE
Confidence 568899999999987 4555441 26677777776544333 23443 13998865
No 308
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.28 E-value=0.0043 Score=46.81 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCcEEEEEECCC-CHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPW-CGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apw-C~~c~~~~p~~~~la~~~ 277 (277)
++.++|.||+.| |++|+...|.+.++.++|
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~ 56 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKL 56 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc
Confidence 578999999998 699999999999988764
No 309
>KOG0913|consensus
Probab=96.19 E-value=0.00086 Score=53.76 Aligned_cols=42 Identities=29% Similarity=0.661 Sum_probs=36.8
Q ss_pred CeEecchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 231 ~v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
.++.++++|+..++ ...++++|+||||+-|+...|.|+..|.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~ 66 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFAT 66 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCC
Confidence 57788899999887 4579999999999999999999988763
No 310
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.09 E-value=0.0051 Score=48.16 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCcEEEEEE-CCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFY-APWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~-apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|.|| +.||++|....+.+.+++++|
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~ 59 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEF 59 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 478999999 899999999999999988764
No 311
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.00 E-value=0.024 Score=39.06 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=42.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc--------------------------------chhhhcc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF--------------------------------QHELNEF 170 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~--------------------------------~~~~~~~ 170 (277)
++.|+++.|++|..+ .+.+.++.....+++.+......-. ......+
T Consensus 1 i~~f~d~~Cp~C~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLF-EPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhh-hHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 367999999999999 5888888766677666655543211 1244667
Q ss_pred CcccCCCCCCeEEEEc
Q psy9102 171 GFDYVPSDKPLVFVRA 186 (277)
Q Consensus 171 ~i~~~~~~~P~i~~~~ 186 (277)
|+.+ +|++++.+
T Consensus 80 g~~g----~Pt~v~~~ 91 (98)
T cd02972 80 GVTG----TPTFVVNG 91 (98)
T ss_pred CCCC----CCEEEECC
Confidence 8877 99998866
No 312
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.00 E-value=0.0057 Score=39.88 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEECCCCHHHhhhhHHHHHHH
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVG 274 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la 274 (277)
++.|+++||++|.++.+.+++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~ 24 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERG 24 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCC
Confidence 57899999999999999888754
No 313
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.92 E-value=0.028 Score=36.91 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=40.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccch---hhhccCcccCCCCCCeEEEEcCCCceeeecCCCC
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH---ELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFS 199 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~---~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~ 199 (277)
+++|..+||+.|.+. ...|.+. .+.+..+|++.... +....|... +|.+++ ++ +. -| .
T Consensus 3 v~lys~~~Cp~C~~a-k~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~----vP~ifi-~g--~~---ig--g 63 (72)
T cd03029 3 VSLFTKPGCPFCARA-KAALQEN------GISYEEIPLGKDITGRSLRAVTGAMT----VPQVFI-DG--EL---IG--G 63 (72)
T ss_pred EEEEECCCCHHHHHH-HHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCC----cCeEEE-CC--EE---Ee--C
Confidence 678999999999988 4555532 26666677665442 222245555 999854 42 22 12 3
Q ss_pred HHHHHHHH
Q psy9102 200 VENLESFL 207 (277)
Q Consensus 200 ~~~l~~fi 207 (277)
.++|.+|+
T Consensus 64 ~~~l~~~l 71 (72)
T cd03029 64 SDDLEKYF 71 (72)
T ss_pred HHHHHHHh
Confidence 56777665
No 314
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.90 E-value=0.0066 Score=48.21 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=26.0
Q ss_pred CCcEEEEEE-CCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFY-APWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~-apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|.|| +.||+.|..-.|.|.++..+|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~ 61 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAEL 61 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHH
Confidence 578999999 999999999999998877653
No 315
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.89 E-value=0.0072 Score=37.64 Aligned_cols=22 Identities=59% Similarity=1.304 Sum_probs=20.0
Q ss_pred EEEEECCCCHHHhhhhHHHHHH
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEV 273 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~l 273 (277)
++.|++.||++|+++.+.+.++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~ 22 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL 22 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH
Confidence 4789999999999999999876
No 316
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.89 E-value=0.026 Score=40.20 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=55.9
Q ss_pred CCeEEeecccceeeeecCCccEEEEEecCCChhhhhhh--HHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCC
Q psy9102 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYW--RNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSD 178 (277)
Q Consensus 101 ~~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~~--~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~ 178 (277)
..+..++..+++.++.. +...+ .|.+..|.-+.+.. .-++=||.+.|.+.+..+.++-.....+...||+..
T Consensus 9 ~g~~~vd~~~ld~~l~~-~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~---- 82 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAA-PGDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRR---- 82 (107)
T ss_dssp -TEEEE-CCCHHHHHHC-CSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TS----
T ss_pred cCCeeechhhHHHHHhC-CCcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCcc----
Confidence 45677788888887644 34444 44444443333320 225558999999998888888777788999999998
Q ss_pred CCeEEEEcCCC
Q psy9102 179 KPLVFVRAEDG 189 (277)
Q Consensus 179 ~P~i~~~~~~~ 189 (277)
.|+++++..+.
T Consensus 83 ~PaLvf~R~g~ 93 (107)
T PF07449_consen 83 WPALVFFRDGR 93 (107)
T ss_dssp SSEEEEEETTE
T ss_pred CCeEEEEECCE
Confidence 99999998653
No 317
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.81 E-value=0.0092 Score=40.14 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=24.1
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
....++.|..+||++|++.+..|++.+-.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 45668899999999999999999876543
No 318
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.78 E-value=0.0081 Score=38.95 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
++.|+++||++|+++.+.|.+.+-
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i 25 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGI 25 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC
Confidence 568999999999999999988653
No 319
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=95.75 E-value=0.0091 Score=44.68 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCCcEEEEEE-CCCCHHHhhhhHHHHHHHhhC
Q psy9102 247 NEKDVLVEFY-APWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 247 ~~~~~lV~f~-apwC~~c~~~~p~~~~la~~~ 277 (277)
.++.++|.|| +.||+.|....|.+.++..+|
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~ 52 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEF 52 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHH
Confidence 4678999999 889999999999999887653
No 320
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.029 Score=37.82 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=33.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc-----hhhhcc-CcccCCCCCCeEEEEc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ-----HELNEF-GFDYVPSDKPLVFVRA 186 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~-----~~~~~~-~i~~~~~~~P~i~~~~ 186 (277)
++.|..++||+|++. +..|.+ ..+.+..++++... ...+.. |.+. +|.|++-+
T Consensus 3 v~iyt~~~CPyC~~a-k~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~t----vP~I~i~~ 61 (80)
T COG0695 3 VTIYTKPGCPYCKRA-KRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRT----VPQIFIGG 61 (80)
T ss_pred EEEEECCCCchHHHH-HHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCC----cCEEEECC
Confidence 567899999999988 454442 22566666665544 223333 5655 99998844
No 321
>KOG2640|consensus
Probab=95.73 E-value=0.0086 Score=50.20 Aligned_cols=87 Identities=18% Similarity=0.347 Sum_probs=63.0
Q ss_pred ccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCC
Q psy9102 120 KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFS 199 (277)
Q Consensus 120 ~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~ 199 (277)
-.+-+.||+.||+..+.. ++.+.-....|..--.++.=+....+.+...+|+.. .|++.+.+..- ...+-|.++
T Consensus 77 ~~vs~~fy~s~C~fsr~~-~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~----~ps~~~~n~t~-~~~~~~~r~ 150 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAV-RPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHS----EPSNLMLNQTC-PASYRGERD 150 (319)
T ss_pred CcccccchhcccCccccc-CcccchhhhhccccccccHHHHhhcccchhcccccc----CCcceeecccc-chhhccccc
Confidence 367788999999988877 677665556666322333222223466788999988 99998887543 556778999
Q ss_pred HHHHHHHHHHHhc
Q psy9102 200 VENLESFLTKVVA 212 (277)
Q Consensus 200 ~~~l~~fi~~~~~ 212 (277)
..+|.+|..+++.
T Consensus 151 l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 151 LASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999998874
No 322
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.63 E-value=0.012 Score=44.04 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=25.0
Q ss_pred CCcEEEEEE-CCCCHHHhhhhHHHHHHHhh
Q psy9102 248 EKDVLVEFY-APWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 248 ~~~~lV~f~-apwC~~c~~~~p~~~~la~~ 276 (277)
++.++|.|| +.||+.|....|.+.++..+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~ 52 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEE 52 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHH
Confidence 578999999 68999999999998888764
No 323
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.62 E-value=0.2 Score=40.80 Aligned_cols=88 Identities=14% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHhcCCCCccccCCCCCCCCCCCeEEeecccceeee--ecCCccEEEEEecCCChhhhhhhHHHHHHHH
Q psy9102 69 FSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVV--TNNEKDVLVEFYAPWCGHCTNYWRNRILKVA 146 (277)
Q Consensus 69 ~~~~~i~~fi~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la 146 (277)
+|.+.++.-..-...........-.+. .+..+..+++++...+. .+.++|.++.|.+-.||+-..-+ ..|.+++
T Consensus 53 fT~~~lk~vw~~~~ldl~~~a~~G~~A---Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l-~~f~~l~ 128 (237)
T PF00837_consen 53 FTLESLKAVWKVMWLDLFKEAKLGGPA---PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKL-DAFKRLV 128 (237)
T ss_pred hhHHHHHHHHHHHHHHcccceeCCCCC---CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHH-HHHHHHH
Confidence 466666555544444433332222222 24677788887743332 35679999999999999988774 8999999
Q ss_pred hhcCCcceEEEecc
Q psy9102 147 KGFADKFTFAISAK 160 (277)
Q Consensus 147 ~~~~~~i~~~~vd~ 160 (277)
++|.+...|+.|-+
T Consensus 129 ~~f~d~adFl~VYI 142 (237)
T PF00837_consen 129 EDFSDVADFLIVYI 142 (237)
T ss_pred HHhhhhhheehhhH
Confidence 99998756665544
No 324
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.60 E-value=0.01 Score=37.47 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
++.|..+||++|++....|++.+-
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i 24 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGI 24 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTB
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCC
Confidence 478999999999999999987653
No 325
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.60 E-value=0.12 Score=36.72 Aligned_cols=79 Identities=15% Similarity=0.331 Sum_probs=51.7
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcC-------CCce
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE-------DGKK 191 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~-------~~~~ 191 (277)
+..++|-|+..--.. + ...|.++|..+++...|+.... ..+...+++ . |+++++.+ +...
T Consensus 18 ~~~~Vvg~f~~~~~~---~-~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~-~-----~~ivl~~p~~~~~k~de~~ 84 (104)
T cd03069 18 DDASVVGFFEDEDSK---L-LSEFLKAADTLRESFRFAHTSD---KQLLEKYGY-G-----EGVVLFRPPRLSNKFEDSS 84 (104)
T ss_pred CCcEEEEEEcCCCch---H-HHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC-C-----CceEEEechhhhcccCccc
Confidence 345555555543332 2 3688899999988899987663 355667766 3 45655532 1223
Q ss_pred eeecCCCCHHHHHHHHHHH
Q psy9102 192 YAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 192 ~~~~g~~~~~~l~~fi~~~ 210 (277)
..|.|..+.+.|.+||...
T Consensus 85 ~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 85 VKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccccCcCCHHHHHHHHHhh
Confidence 4578888999999999753
No 326
>PRK10638 glutaredoxin 3; Provisional
Probab=95.32 E-value=0.039 Score=37.39 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=32.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchh----hhccCcccCCCCCCeEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHE----LNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~~~~~P~i~~ 184 (277)
++.|..+||++|.+. ...|.+. .+.+..+|++..+.. .+..|... +|++++
T Consensus 4 v~ly~~~~Cp~C~~a-~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~----vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRA-KALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTT----VPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHH-HHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCC----cCEEEE
Confidence 567889999999987 4555442 266667777665432 23334444 898855
No 327
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.31 E-value=0.03 Score=38.69 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=28.1
Q ss_pred CCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhh----hccCcccCCCCCCeEEE
Q psy9102 129 PWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL----NEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 129 ~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~----~~~~i~~~~~~~P~i~~ 184 (277)
+||+.|.+. ...|.+.. +.+..+|+...+.+. +..|-.. +|.+++
T Consensus 21 ~~Cp~C~~a-k~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~t----vP~vfi 69 (90)
T cd03028 21 PRCGFSRKV-VQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPT----FPQLYV 69 (90)
T ss_pred CCCcHHHHH-HHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCC----CCEEEE
Confidence 799999987 45554432 566677776554433 3334444 899855
No 328
>smart00594 UAS UAS domain.
Probab=95.29 E-value=0.027 Score=41.32 Aligned_cols=31 Identities=0% Similarity=0.009 Sum_probs=23.6
Q ss_pred hcHHHHh---hcCCCcEEEEEECCCCHHHhhhhH
Q psy9102 238 KNFDEVV---TNNEKDVLVEFYAPWCGHCKKLTP 268 (277)
Q Consensus 238 ~~f~~~v---~~~~~~~lV~f~apwC~~c~~~~p 268 (277)
.+|++.+ ...+|.++|+|+++||..|+.+..
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r 47 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNR 47 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHH
Confidence 3555443 445689999999999999998754
No 329
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.25 E-value=0.017 Score=40.76 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.9
Q ss_pred cEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 250 DVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 250 ~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
+-++.|..|||++|.+....|.+++..
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~ 34 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVN 34 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 457889999999999999999887643
No 330
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.24 E-value=0.042 Score=38.55 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhh----hccCcccCCCCCCeEEEE
Q psy9102 129 PWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL----NEFGFDYVPSDKPLVFVR 185 (277)
Q Consensus 129 ~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~----~~~~i~~~~~~~P~i~~~ 185 (277)
+||++|.+. ...|.+. .+.+..+|+..++... +..|... +|.+++-
T Consensus 25 ~~Cp~C~~a-k~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~t----vP~vfi~ 74 (97)
T TIGR00365 25 PQCGFSARA-VQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPT----IPQLYVK 74 (97)
T ss_pred CCCchHHHH-HHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCC----CCEEEEC
Confidence 899999988 4555543 2566677876655433 2234333 8888663
No 331
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.09 E-value=0.053 Score=39.49 Aligned_cols=38 Identities=29% Similarity=0.667 Sum_probs=28.1
Q ss_pred hcHHHHhh---cCCCcEEEEEEC-------CCCHHHhhhhHHHHHHHh
Q psy9102 238 KNFDEVVT---NNEKDVLVEFYA-------PWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 238 ~~f~~~v~---~~~~~~lV~f~a-------pwC~~c~~~~p~~~~la~ 275 (277)
+.|.+.+. +.++.++|.|++ +||+.|.+..|.+++.-.
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~ 53 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFK 53 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHH
Confidence 44555553 355789999974 599999999999987643
No 332
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.02 E-value=0.1 Score=37.30 Aligned_cols=87 Identities=9% Similarity=0.197 Sum_probs=53.0
Q ss_pred ceeeeecCCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC--
Q psy9102 111 FDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED-- 188 (277)
Q Consensus 111 ~~~~~~~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~-- 188 (277)
.+.++...+..++|-|+...-.. . ...|.++|..+++...|+.... ..+...+++. .|.++++.+.
T Consensus 11 le~f~~~~~~~~VVG~F~~~~~~---~-~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~-----~~~vvl~rp~~~ 78 (107)
T cd03068 11 VQEFLRDGDDVIIIGVFSGEEDP---A-YQLYQDAANSLREDYKFHHTFD---SEIFKSLKVS-----PGQLVVFQPEKF 78 (107)
T ss_pred HHHHHhcCCCEEEEEEECCCCCH---H-HHHHHHHHHhcccCCEEEEECh---HHHHHhcCCC-----CCceEEECcHHH
Confidence 33433333144444454443221 2 3688899999998899977653 3566777776 5667666332
Q ss_pred -----CceeeecCC-CCHHH-HHHHHHH
Q psy9102 189 -----GKKYAMKDE-FSVEN-LESFLTK 209 (277)
Q Consensus 189 -----~~~~~~~g~-~~~~~-l~~fi~~ 209 (277)
.....|.|. .+.++ |.+||++
T Consensus 79 ~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 79 QSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhhcCcceeeeeccccchHHHHHHHHhc
Confidence 123456766 56656 9999975
No 333
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.98 E-value=0.056 Score=40.87 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=30.8
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecc
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAK 160 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~ 160 (277)
.+..++.|+.++|++|+.+ .+.+.++...+. ++.+...+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~-~~~l~~~~~~~~-~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKL-APELEKLLKEDP-DVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHh-hHHHHHHHHHCC-CceEEEEeC
Confidence 3678899999999999999 588888877765 455555443
No 334
>PHA03050 glutaredoxin; Provisional
Probab=94.95 E-value=0.023 Score=40.76 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=22.4
Q ss_pred cEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 250 DVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 250 ~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
.-++.|..|||++|++....|.+++.
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i 38 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSF 38 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC
Confidence 45888999999999999999988753
No 335
>PF13728 TraF: F plasmid transfer operon protein
Probab=94.81 E-value=0.03 Score=45.46 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=27.5
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.-|+.||.+.|++|.++.|+++.++++|
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y 149 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY 149 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh
Confidence 567899999999999999999999999875
No 336
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.75 E-value=0.029 Score=51.33 Aligned_cols=36 Identities=28% Similarity=0.648 Sum_probs=27.2
Q ss_pred ecchh-cHHHHhhcC-CCcEEEEEECCCCHHHhhhhHH
Q psy9102 234 VAVAK-NFDEVVTNN-EKDVLVEFYAPWCGHCKKLTPV 269 (277)
Q Consensus 234 ~l~~~-~f~~~v~~~-~~~~lV~f~apwC~~c~~~~p~ 269 (277)
.++.. .+++.+.++ .++++|+|||.||--||.+.+.
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~ 495 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKY 495 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhh
Confidence 33333 667776554 3599999999999999998765
No 337
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.60 E-value=0.09 Score=40.24 Aligned_cols=41 Identities=22% Similarity=0.511 Sum_probs=33.8
Q ss_pred ccEEEEEecCCChhhhhhhHHHHHHHHhhc--CCcceEEEeccc
Q psy9102 120 KDVLVEFYAPWCGHCTNYWRNRILKVAKGF--ADKFTFAISAKD 161 (277)
Q Consensus 120 ~~~~v~F~~~~c~~c~~~~~~~~~~la~~~--~~~i~~~~vd~~ 161 (277)
+.+++.|++..|++|..+ .+.+.++.+++ .+++.|...+..
T Consensus 13 ~~~v~~f~d~~Cp~C~~~-~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKF-HEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp SEEEEEEE-TTSHHHHHH-HHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CeEEEEEECCCCHhHHHH-HHHHhhhhhhccCCCceEEEEEEcc
Confidence 578999999999999999 58888988888 778888877763
No 338
>PRK10824 glutaredoxin-4; Provisional
Probab=94.57 E-value=0.056 Score=39.13 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=25.7
Q ss_pred CCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEE
Q psy9102 129 PWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 129 ~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~ 184 (277)
|||+.|++. ...|..+. +.+..+|+.....+...+.-....+.+|.|++
T Consensus 28 p~Cpyc~~a-k~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 28 PSCGFSAQA-VQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred CCCchHHHH-HHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 699999988 45555542 33444555544443322211111123777766
No 339
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.56 E-value=0.031 Score=36.80 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.8
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
++.|+.|||++|++....|++.+-
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi 26 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGL 26 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCC
Confidence 678999999999999999987654
No 340
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=94.50 E-value=0.39 Score=33.87 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhcCC--ceEEEEEcccchHHH----hhhcCCCCCCCCCcEEEEEc---CCCCcccCCCC---CCHHHH
Q psy9102 7 NYWRNRILKVAKGFAD--KFTFAISAKDDFQHE----LNEFGFDYVPSDKPLVFVRA---EDGKKYAMKDE---FSVENL 74 (277)
Q Consensus 7 ~~~~~~f~~~A~~~~~--~~~f~~~~~~~~~~~----~~~~~v~~~~~~~P~~~~~~---~~~~~y~~~g~---~~~~~i 74 (277)
-+|++.++++|+.+.+ ++.|++||.++++-+ -+.|||.- ..|.+-+.+ .++.=|.+++. .+.++|
T Consensus 36 ~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl---~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~L 112 (120)
T cd03074 36 YEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDL---FRPQIGVVNVTDADSVWMEMDDDEDLPTAEEL 112 (120)
T ss_pred HHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCccc---CCCceeeEecccccceeEecccccccCcHHHH
Confidence 6789999999998864 699999999997554 45689887 467444443 22344555544 689999
Q ss_pred HHHHHHH
Q psy9102 75 ESFLTKV 81 (277)
Q Consensus 75 ~~fi~~~ 81 (277)
.+||.+.
T Consensus 113 e~WiedV 119 (120)
T cd03074 113 EDWIEDV 119 (120)
T ss_pred HHHHHhh
Confidence 9999875
No 341
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.28 E-value=0.042 Score=43.59 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=26.2
Q ss_pred CCcEEEEEE-CCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFY-APWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~-apwC~~c~~~~p~~~~la~~~ 277 (277)
++.+++.|| +.||+.|..-.+.|.++..+|
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f 61 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEEL 61 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 468999999 999999999999999887764
No 342
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.23 E-value=0.093 Score=40.89 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=35.0
Q ss_pred CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccc
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKD 161 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~ 161 (277)
.+..++.|+...|++|+.+ ++.+.++.+++.+++.+..+...
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~-~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNF-EPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCcEEEEEECCCCcchhhh-hHHHHHHHHhCCCCceEEEcCCc
Confidence 4688999999999999999 78999888888877777655543
No 343
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=94.12 E-value=0.054 Score=41.34 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=23.5
Q ss_pred CCcEEEEEECC-CCHHHhhhhHHHHHHHhh
Q psy9102 248 EKDVLVEFYAP-WCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 248 ~~~~lV~f~ap-wC~~c~~~~p~~~~la~~ 276 (277)
++.++|.||+. ||+.|....+.+.++.++
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~ 59 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDE 59 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 57899999975 788899888888877664
No 344
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.03 E-value=0.045 Score=36.04 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
++.|..+||++|.+.+..|++.+-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i 25 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGV 25 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC
Confidence 568899999999999999987653
No 345
>KOG3425|consensus
Probab=94.01 E-value=0.13 Score=37.05 Aligned_cols=38 Identities=34% Similarity=0.741 Sum_probs=28.1
Q ss_pred hcHHHHhhc--CCCcEEEEEE--------CCCCHHHhhhhHHHHHHHh
Q psy9102 238 KNFDEVVTN--NEKDVLVEFY--------APWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 238 ~~f~~~v~~--~~~~~lV~f~--------apwC~~c~~~~p~~~~la~ 275 (277)
+.|++.+.+ +++-++|.|+ .+||+.|.+..|.+.+.-+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk 60 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALK 60 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHH
Confidence 556666532 2345999997 4699999999999987654
No 346
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.94 E-value=0.05 Score=36.76 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.1
Q ss_pred EEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 251 VLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 251 ~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
.++.|..+||++|.+.+..|++.+-
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI 26 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGF 26 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCC
Confidence 3678999999999999999987654
No 347
>KOG1752|consensus
Probab=93.85 E-value=0.24 Score=35.11 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=33.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhc-c-CcccCCCCCCeEEE
Q psy9102 122 VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNE-F-GFDYVPSDKPLVFV 184 (277)
Q Consensus 122 ~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~-~-~i~~~~~~~P~i~~ 184 (277)
-+|.|..+||+.|..+ +..|.+ +.....++.+|-..+..-.+. + .+.+ .+.+|.+++
T Consensus 15 ~VVifSKs~C~~c~~~-k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg-~~tvP~vFI 73 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRA-KELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTG-QRTVPNVFI 73 (104)
T ss_pred CEEEEECCcCchHHHH-HHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcC-CCCCCEEEE
Confidence 4567999999999986 444444 555566677776654432211 1 1121 123888877
No 348
>KOG3171|consensus
Probab=93.81 E-value=0.19 Score=40.07 Aligned_cols=102 Identities=16% Similarity=0.260 Sum_probs=72.3
Q ss_pred CeEEe-ecccceeeeecC--CccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCC
Q psy9102 102 PVKVA-VAKNFDEVVTNN--EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSD 178 (277)
Q Consensus 102 ~i~~~-~~~~~~~~~~~~--~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~ 178 (277)
.|+++ +++.|...+-.. ...++|..|.+.-..|..+ ...+.=||.+|.- +.|..+-.+ +-.....|....
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gceal-n~~~~cLAAeyP~-vKFckikss-~~gas~~F~~n~---- 211 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEAL-NSSLTCLAAEYPI-VKFCKIKSS-NTGASDRFSLNV---- 211 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHH-hhhHHHhhccCCc-eeEEEeeec-cccchhhhcccC----
Confidence 34444 456676655332 2368889999999999999 6888899999997 999988865 334457788877
Q ss_pred CCeEEEEcCCCcee---e----ecCCCCHHHHHHHHHHH
Q psy9102 179 KPLVFVRAEDGKKY---A----MKDEFSVENLESFLTKV 210 (277)
Q Consensus 179 ~P~i~~~~~~~~~~---~----~~g~~~~~~l~~fi~~~ 210 (277)
+|++.||+++...- . +-.++....|..|++.+
T Consensus 212 lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 212 LPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred CceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999664321 1 12255666778888765
No 349
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.67 E-value=0.068 Score=34.99 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 251 VLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 251 ~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
-+++|..+||++|.+.+..|++.+-
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i 26 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGI 26 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCC
Confidence 3678999999999999999887654
No 350
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.40 E-value=0.36 Score=31.99 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC-CcccCCC-CCCHHHHHHHHH
Q psy9102 6 TNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKD-EFSVENLESFLT 79 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~-~~y~~~g-~~~~~~i~~fi~ 79 (277)
++...+..++++..+. +..-.++..+.+.+ .+|||. ..|++++. | ..| .| -.+.++|.+||+
T Consensus 13 C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~----~vPalvIn---g~~~~--~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 13 CPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVM----SVPALVIN---GKVVF--VGRVPSKEELKELLE 76 (76)
T ss_dssp HHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-S----SSSEEEET---TEEEE--ESS--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCC----CCCEEEEC---CEEEE--EecCCCHHHHHHHhC
Confidence 4677888889999883 66666666666666 999999 57888664 5 677 78 578899999874
No 351
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=93.04 E-value=0.099 Score=43.24 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=27.3
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.-|+.||.+-|++|.++.|++..++++|
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y 172 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY 172 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh
Confidence 458899999999999999999999999875
No 352
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=92.84 E-value=0.27 Score=35.06 Aligned_cols=68 Identities=22% Similarity=0.354 Sum_probs=42.6
Q ss_pred hHHHHHHH---HHHHhcCCceEEEEEcccch--------------------HHHhhhcCCCCCCCCCcEEEEEcCCC-Cc
Q psy9102 7 NYWRNRIL---KVAKGFADKFTFAISAKDDF--------------------QHELNEFGFDYVPSDKPLVFVRAEDG-KK 62 (277)
Q Consensus 7 ~~~~~~f~---~~A~~~~~~~~f~~~~~~~~--------------------~~~~~~~~v~~~~~~~P~~~~~~~~~-~~ 62 (277)
..+.+++. +++..+++++.++.++.... ..+...+||.+ +|++++.+.+| ..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g----tPt~~~~d~~G~~v 96 (112)
T PF13098_consen 21 KKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG----TPTIVFLDKDGKIV 96 (112)
T ss_dssp HHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S----SSEEEECTTTSCEE
T ss_pred HHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc----cCEEEEEcCCCCEE
Confidence 34444444 45666665666666666532 34788999995 79888887667 34
Q ss_pred ccCCCCCCHHHHHHHH
Q psy9102 63 YAMKDEFSVENLESFL 78 (277)
Q Consensus 63 y~~~g~~~~~~i~~fi 78 (277)
+.+.|-.+.++|.+++
T Consensus 97 ~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 97 YRIPGYLSPEELLKML 112 (112)
T ss_dssp EEEESS--HHHHHHHH
T ss_pred EEecCCCCHHHHHhhC
Confidence 4448989999998875
No 353
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.68 E-value=0.086 Score=34.58 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEECCCCHHHhhhhHHHHHHHh
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~ 275 (277)
..|..++|++|++....|++.+-
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i 24 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGI 24 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCC
Confidence 57889999999999999987654
No 354
>PRK15000 peroxidase; Provisional
Probab=92.61 E-value=0.11 Score=41.63 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=29.1
Q ss_pred hcHHHHhhcCCCcEEEEEECC-CCHHHhhhhHHHHHHHhhC
Q psy9102 238 KNFDEVVTNNEKDVLVEFYAP-WCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 238 ~~f~~~v~~~~~~~lV~f~ap-wC~~c~~~~p~~~~la~~~ 277 (277)
.++.+.. .++.++|.||+. ||+.|..-.+.|.+++.+|
T Consensus 26 ~~l~~~~--~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f 64 (200)
T PRK15000 26 FNFKQHT--NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEF 64 (200)
T ss_pred eeHHHHh--CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 4444433 247899999995 9999999999999887764
No 355
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.46 E-value=0.29 Score=43.95 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=25.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ 164 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~ 164 (277)
++.|+.+||++|.+. +..|.+. + +.+..+|+++.+
T Consensus 4 V~vys~~~Cp~C~~a-K~~L~~~-----g-i~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLA-KSWFGAN-----D-IPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHH-HHHHHHC-----C-CCeEEEECCCCh
Confidence 678999999999987 4444442 2 777778887555
No 356
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=92.42 E-value=0.13 Score=42.77 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.-||.||..-|++|.++.|++..++++|
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y 179 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY 179 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh
Confidence 458899999999999999999999999875
No 357
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.28 Score=45.95 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=57.2
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHHH--HHHhhcCCcceEEEecccccchhhhccC-----cccCCCCCCeEEEEcCCC
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRIL--KVAKGFADKFTFAISAKDDFQHELNEFG-----FDYVPSDKPLVFVRAEDG 189 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~~--~la~~~~~~i~~~~vd~~~~~~~~~~~~-----i~~~~~~~P~i~~~~~~~ 189 (277)
..++|+++-...+||--|..|-+..|. ++|.-++..+.-++||-++-+++.+.|. +++ ..+-|.-+|..+++
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG-~GGWPLtVfLTPd~ 119 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITG-QGGWPLTVFLTPDG 119 (667)
T ss_pred HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhcc-CCCCceeEEECCCC
Confidence 456999999999999999998555666 7889898889999999988877655543 111 13589777777677
Q ss_pred cee
Q psy9102 190 KKY 192 (277)
Q Consensus 190 ~~~ 192 (277)
+++
T Consensus 120 kPF 122 (667)
T COG1331 120 KPF 122 (667)
T ss_pred cee
Confidence 754
No 358
>PRK10638 glutaredoxin 3; Provisional
Probab=92.32 E-value=0.13 Score=34.72 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
++.|..+||++|++....+++.+-
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi 27 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGV 27 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC
Confidence 567889999999999999887654
No 359
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.19 E-value=0.11 Score=36.36 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=16.7
Q ss_pred CCCCHHHhhhhHHHHHHHhh
Q psy9102 257 APWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 257 apwC~~c~~~~p~~~~la~~ 276 (277)
+|||++|.+....|.+++-.
T Consensus 24 ~~~Cp~C~~ak~lL~~~~i~ 43 (97)
T TIGR00365 24 FPQCGFSARAVQILKACGVP 43 (97)
T ss_pred CCCCchHHHHHHHHHHcCCC
Confidence 39999999999999887543
No 360
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=91.94 E-value=0.16 Score=40.51 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHH
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEE 272 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~ 272 (277)
.+..++.|+.|.|++|+++.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 5789999999999999999988875
No 361
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=91.69 E-value=0.14 Score=39.36 Aligned_cols=33 Identities=12% Similarity=0.438 Sum_probs=21.1
Q ss_pred cchhcHHHHhhcCCCcEEEEEECCCCHHHhhhhH
Q psy9102 235 AVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTP 268 (277)
Q Consensus 235 l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p 268 (277)
...+.|+.. .+.+|++||.++.+||+.|..|..
T Consensus 25 w~~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 25 WGEEALEKA-KKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp SSHHHHHHH-HHHT--EEEEEE-TT-HHHHHHHH
T ss_pred CCHHHHHHH-HhcCCcEEEEEEecCCcchhhhcc
Confidence 334556555 344799999999999999998763
No 362
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=2.6 Score=32.28 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=53.8
Q ss_pred CCccEEEEEe-cCCChhhhhhhHHHHHHHHhhcCCc-ceEEEeccc---------------------ccchhhhccCccc
Q psy9102 118 NEKDVLVEFY-APWCGHCTNYWRNRILKVAKGFADK-FTFAISAKD---------------------DFQHELNEFGFDY 174 (277)
Q Consensus 118 ~~~~~~v~F~-~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~---------------------~~~~~~~~~~i~~ 174 (277)
.+++++++|| ..+.+-|... .-.|++...+|+.. ..++-|..+ ....+++.||+-.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~E-a~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTE-ACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred cCCcEEEEECCCCCCCcchHH-HHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 4568999999 4557778766 36777777777653 333333332 2345677777743
Q ss_pred CC--------CCCCeEEEEcCCCc-eeeecC---CCCHHHHHHHHHHH
Q psy9102 175 VP--------SDKPLVFVRAEDGK-KYAMKD---EFSVENLESFLTKV 210 (277)
Q Consensus 175 ~~--------~~~P~i~~~~~~~~-~~~~~g---~~~~~~l~~fi~~~ 210 (277)
.. ...++.++++.+|. .+.+.. .-..+++.+.+.++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 10 13456778887775 333422 23445666666554
No 363
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=91.48 E-value=1.8 Score=30.58 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=54.1
Q ss_pred ccEEEEEecCCCh-hhhhhhHHHHHHHHhhc----C--Cc----ceEEEecccccchhhhccCcccCCCCCCeEEEEc-C
Q psy9102 120 KDVLVEFYAPWCG-HCTNYWRNRILKVAKGF----A--DK----FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRA-E 187 (277)
Q Consensus 120 ~~~~v~F~~~~c~-~c~~~~~~~~~~la~~~----~--~~----i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~-~ 187 (277)
.|.+|+|...-.. .-+.. ++.++.+|+++ + ++ +-|+..|.+-...+....++. ...|.+++.+ +
T Consensus 15 ~p~lvlf~D~Edeg~l~~A-~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~---d~~P~LviLDip 90 (116)
T cd03071 15 GPCLVLFVDSEDEGESEAA-KQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLP---EAAPLLTILDMS 90 (116)
T ss_pred CceEEEEecccchhhHHHH-HHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCC---ccCceEEEEecc
Confidence 5788888744322 34444 46666666543 2 21 445555544444455555665 3488887766 3
Q ss_pred CCceeeec-CCCCHHHHHHHHHHHh
Q psy9102 188 DGKKYAMK-DEFSVENLESFLTKVV 211 (277)
Q Consensus 188 ~~~~~~~~-g~~~~~~l~~fi~~~~ 211 (277)
...+|... ..+|.+.+.+|+.+++
T Consensus 91 ~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 91 ARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ccceEeCchHhcCHHHHHHHHHHhh
Confidence 34455543 5899999999999986
No 364
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=91.35 E-value=0.17 Score=34.81 Aligned_cols=19 Identities=26% Similarity=0.777 Sum_probs=16.3
Q ss_pred CCCHHHhhhhHHHHHHHhh
Q psy9102 258 PWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 258 pwC~~c~~~~p~~~~la~~ 276 (277)
|||++|++.+..|++....
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~ 39 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVD 39 (90)
T ss_pred CCCcHHHHHHHHHHHcCCC
Confidence 8999999999999887543
No 365
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=91.25 E-value=0.29 Score=40.24 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=24.5
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
++.+++.|..|.|++|+++.+.+.++.+
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence 5678999999999999999999988753
No 366
>PRK10824 glutaredoxin-4; Provisional
Probab=91.01 E-value=0.2 Score=36.23 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.4
Q ss_pred CCCHHHhhhhHHHHHHHhh
Q psy9102 258 PWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 258 pwC~~c~~~~p~~~~la~~ 276 (277)
|||++|++...+|..++..
T Consensus 28 p~Cpyc~~ak~lL~~~~i~ 46 (115)
T PRK10824 28 PSCGFSAQAVQALSACGER 46 (115)
T ss_pred CCCchHHHHHHHHHHcCCC
Confidence 7999999999999887644
No 367
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.89 E-value=0.36 Score=38.95 Aligned_cols=41 Identities=17% Similarity=0.393 Sum_probs=32.8
Q ss_pred CccEEEEEecCCChhhhhhhHHHH---HHHHhhcCCcceEEEecc
Q psy9102 119 EKDVLVEFYAPWCGHCTNYWRNRI---LKVAKGFADKFTFAISAK 160 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~c~~~~~~~~---~~la~~~~~~i~~~~vd~ 160 (277)
+++.+|.|++..|++|..+ ++.+ ..+.+.+.+.+.++.+..
T Consensus 37 ~~~~VvEffdy~CphC~~~-~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQF-EEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHh-cccccchHHHHHhCCCCCeEEEecc
Confidence 3677999999999999998 5655 678888887777776654
No 368
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=0.23 Score=33.42 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
++.|..|||++|.+....|.+.+-.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~ 27 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVD 27 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCC
Confidence 5688999999999999998876543
No 369
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=90.61 E-value=0.25 Score=41.35 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=24.9
Q ss_pred CCcEEEEEE-CCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFY-APWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~-apwC~~c~~~~p~~~~la~~~ 277 (277)
++.+++.|| +.||+.|..-.+.|.++..+|
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef 128 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEF 128 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 467888887 899999999999998887654
No 370
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=89.96 E-value=1.8 Score=30.99 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=44.9
Q ss_pred HHHHhcCCceEEEEEccc--chHHHhhhcCCCCCCCCCcEEEEEcC-CC-CcccCCCCCCHHHHHHHHHHHhc
Q psy9102 15 KVAKGFADKFTFAISAKD--DFQHELNEFGFDYVPSDKPLVFVRAE-DG-KKYAMKDEFSVENLESFLTKVVA 83 (277)
Q Consensus 15 ~~A~~~~~~~~f~~~~~~--~~~~~~~~~~v~~~~~~~P~~~~~~~-~~-~~y~~~g~~~~~~i~~fi~~~~~ 83 (277)
++.+.++.++.+..+|.. +...++..|++.+ +|++++... +| ..+.+.|..+.+++.+-+.....
T Consensus 44 ~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~----~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 44 SVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDK----YPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred HHHHHHHhCEEEEEecCCCccHHHHHHHhCccC----CCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 455555556777777765 4556889999995 675555544 56 44455899999999888877643
No 371
>PRK13191 putative peroxiredoxin; Provisional
Probab=89.05 E-value=0.35 Score=39.31 Aligned_cols=30 Identities=7% Similarity=0.029 Sum_probs=24.1
Q ss_pred CCcEEE-EEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLV-EFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV-~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++| .|++.||+.|..-.+.|.+++.+|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef 63 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEF 63 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHH
Confidence 455554 678999999999999999888764
No 372
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=89.00 E-value=0.38 Score=38.55 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCcEEEEEE-CCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFY-APWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~-apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++|.|| +.||.+|....+.+.+++++|
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f 66 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRF 66 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHH
Confidence 568888999 478999988778888877654
No 373
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=88.41 E-value=0.49 Score=34.35 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.1
Q ss_pred hcCCCcEEEEEECC----CCHHHhhh
Q psy9102 245 TNNEKDVLVEFYAP----WCGHCKKL 266 (277)
Q Consensus 245 ~~~~~~~lV~f~ap----wC~~c~~~ 266 (277)
++..|.++|++|++ ||.+|+..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~ 39 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNT 39 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHH
Confidence 45679999999999 99999876
No 374
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=88.33 E-value=0.65 Score=38.69 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.3
Q ss_pred CCCcEEEEEECCCCHHHhhhhHHHHHHH
Q psy9102 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVG 274 (277)
Q Consensus 247 ~~~~~lV~f~apwC~~c~~~~p~~~~la 274 (277)
+.+.+++.|..|.|++|+++.+.+.++.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~ 143 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWV 143 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHh
Confidence 3567899999999999999988876643
No 375
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=87.48 E-value=0.56 Score=33.24 Aligned_cols=76 Identities=12% Similarity=0.028 Sum_probs=39.3
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc----hhhhccCcccCCCCCCeEEEEcCCCceeee-----
Q psy9102 124 VEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ----HELNEFGFDYVPSDKPLVFVRAEDGKKYAM----- 194 (277)
Q Consensus 124 v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~----- 194 (277)
..|+.++|+.|++. ...|.+. .+.|-.+|+.+.+ .+.+..+..+ .+.--+++..+..++-
T Consensus 2 ~iY~~~~C~~c~ka-~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~----~~~~~li~~~~~~~~~l~~~~ 70 (105)
T cd02977 2 TIYGNPNCSTSRKA-LAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLG----LGVEDLFNTRGTPYRKLGLAD 70 (105)
T ss_pred EEEECCCCHHHHHH-HHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcC----CCHHHHHhcCCchHHHcCCcc
Confidence 57899999999987 3444431 2556566665432 2222222222 2222333434433322
Q ss_pred cCCCCHHHHHHHHHHH
Q psy9102 195 KDEFSVENLESFLTKV 210 (277)
Q Consensus 195 ~g~~~~~~l~~fi~~~ 210 (277)
...++.+++.+++.+.
T Consensus 71 ~~~ls~~e~~~~l~~~ 86 (105)
T cd02977 71 KDELSDEEALELMAEH 86 (105)
T ss_pred ccCCCHHHHHHHHHhC
Confidence 1346667777776653
No 376
>KOG0908|consensus
Probab=87.31 E-value=2.3 Score=34.95 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC---CcccCCCCCCHHHHHHHHHHHh
Q psy9102 6 TNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG---KKYAMKDEFSVENLESFLTKVV 82 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~---~~y~~~g~~~~~~i~~fi~~~~ 82 (277)
++...+.|..+|.+| .+..|..+|.++.+..+..+||.. .||.++.. +| ..+ +| .+...|+.-|..+.
T Consensus 36 Ck~IaP~Fs~lankY-p~aVFlkVdVd~c~~taa~~gV~a----mPTFiff~-ng~kid~~--qG-Ad~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 36 CKRIAPIFSDLANKY-PGAVFLKVDVDECRGTAATNGVNA----MPTFIFFR-NGVKIDQI--QG-ADASGLEEKVAKYA 106 (288)
T ss_pred HHhhhhHHHHhhhhC-cccEEEEEeHHHhhchhhhcCccc----CceEEEEe-cCeEeeee--cC-CCHHHHHHHHHHHh
Confidence 467889999999999 789999999999999999999995 67666552 44 444 44 67778888888887
Q ss_pred cCC
Q psy9102 83 AGE 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 107 sts 109 (288)
T KOG0908|consen 107 STS 109 (288)
T ss_pred ccC
Confidence 653
No 377
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=87.19 E-value=1.1 Score=37.57 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=36.5
Q ss_pred CCCeEecc-hhcHHHHhhcCC--CcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 229 SGPVKVAV-AKNFDEVVTNNE--KDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 229 ~~~v~~l~-~~~f~~~v~~~~--~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
-+.|..++ ++.|.+.|.+.+ ..|+|-||.|.+.-|..|-..|..||..|
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky 175 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY 175 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC
Confidence 35687775 588988886543 46889999999999999999999999876
No 378
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=86.55 E-value=0.45 Score=36.23 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.3
Q ss_pred CCcEEEEEECCCCHHHh
Q psy9102 248 EKDVLVEFYAPWCGHCK 264 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~ 264 (277)
++.++|+|||+||+--+
T Consensus 22 Gk~vvl~fwatwC~C~~ 38 (152)
T cd00340 22 GKVLLIVNVASKCGFTP 38 (152)
T ss_pred CCEEEEEEEcCCCCchH
Confidence 58999999999998443
No 379
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=86.47 E-value=2.1 Score=30.35 Aligned_cols=64 Identities=13% Similarity=0.245 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcccchHH----HhhhcCCCCCCCCCc-EEEEEcCCC-CcccC-CCCCCHHHHH
Q psy9102 7 NYWRNRILKVAKGFADKFTFAISAKDDFQH----ELNEFGFDYVPSDKP-LVFVRAEDG-KKYAM-KDEFSVENLE 75 (277)
Q Consensus 7 ~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~----~~~~~~v~~~~~~~P-~~~~~~~~~-~~y~~-~g~~~~~~i~ 75 (277)
..-.+.|++.+....+++.++.++.-+.+. +++.+||.= .+| +++++ +| ..|.- +..++.++|+
T Consensus 35 ~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H---eSPQ~ili~--~g~~v~~aSH~~It~~~lk 105 (105)
T PF11009_consen 35 AMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH---ESPQVILIK--NGKVVWHASHWDITAEALK 105 (105)
T ss_dssp HHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-------SSEEEEEE--TTEEEEEEEGGG-SHHHH-
T ss_pred HHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc---CCCcEEEEE--CCEEEEECccccCCHHhcC
Confidence 344567888888776669999999887643 688999998 689 66666 55 56632 2356777663
No 380
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=85.76 E-value=1.4 Score=33.74 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=33.3
Q ss_pred CccEEEEEe-cCCChhhhhh-hHHHHHHHHhhcCCc-c-eEEEeccccc---chhhhccCc
Q psy9102 119 EKDVLVEFY-APWCGHCTNY-WRNRILKVAKGFADK-F-TFAISAKDDF---QHELNEFGF 172 (277)
Q Consensus 119 ~~~~~v~F~-~~~c~~c~~~-~~~~~~~la~~~~~~-i-~~~~vd~~~~---~~~~~~~~i 172 (277)
++++++.|| ..||+.|... + ..|.+...+|+.. . .++.|..+.. ..+++.+++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~-~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHL-PGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHH-HHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 356666666 7889999975 5 6788888888643 3 3555554422 335555555
No 381
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=85.48 E-value=2.6 Score=27.61 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=42.0
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHhh-cCCcceEEEecccccchhhhccCcccCCCCCCeEEE
Q psy9102 122 VLVEFYAPWCGHCTNYWRNRILKVAKG-FADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 122 ~~v~F~~~~c~~c~~~~~~~~~~la~~-~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~ 184 (277)
.+.+|-+...+.+...+ ..+.++-++ +.+.+.+-.||+.+++.+++.++|-. .||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai-~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivA----tPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERAL-QNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVA----TPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHH-HHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEE----echhhh
Confidence 34455555556666664 455554444 46679999999999999999999988 999753
No 382
>PRK13189 peroxiredoxin; Provisional
Probab=84.95 E-value=0.68 Score=37.81 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=23.4
Q ss_pred CCcEE-EEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVL-VEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~l-V~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.++ +.|++.||+.|....+.|.+++.+|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef 65 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEF 65 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 45454 4667999999999888888887664
No 383
>KOG2603|consensus
Probab=84.81 E-value=4.4 Score=34.45 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCC--------ceEEEEEcccchHHHhhhcCCCCCCCCCc-EEEEEcCCC-----Cccc-CCCCCCHH
Q psy9102 8 YWRNRILKVAKGFAD--------KFTFAISAKDDFQHELNEFGFDYVPSDKP-LVFVRAEDG-----KKYA-MKDEFSVE 72 (277)
Q Consensus 8 ~~~~~f~~~A~~~~~--------~~~f~~~~~~~~~~~~~~~~v~~~~~~~P-~~~~~~~~~-----~~y~-~~g~~~~~ 72 (277)
...++|.-+|..++. ++-|+.+|-++.+...+.+++. ..| +++|.|..| ..++ -+-....|
T Consensus 81 ~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln----~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae 156 (331)
T KOG2603|consen 81 QAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLN----NVPHLVLFSPAKGNKKRSDQMDQQDLGFEAE 156 (331)
T ss_pred hHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhccc----CCCeEEEeCCCccccccCccchhhhcchhHH
Confidence 345889999987762 5889999999999999999999 567 555656444 1221 02235699
Q ss_pred HHHHHHHHHhcCCCC
Q psy9102 73 NLESFLTKVVAGEVD 87 (277)
Q Consensus 73 ~i~~fi~~~~~~~~~ 87 (277)
+|.+|+++...-.+.
T Consensus 157 ~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 157 QIAQFVADRTKVNVR 171 (331)
T ss_pred HHHHHHHHhhhheee
Confidence 999999998765554
No 384
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=84.32 E-value=1 Score=36.32 Aligned_cols=22 Identities=32% Similarity=0.895 Sum_probs=19.2
Q ss_pred CcEEEEEECCCCHHHhhhhHHH
Q psy9102 249 KDVLVEFYAPWCGHCKKLTPVY 270 (277)
Q Consensus 249 ~~~lV~f~apwC~~c~~~~p~~ 270 (277)
++.+|.|++.-|+||.++.|.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccc
Confidence 5679999999999999988755
No 385
>KOG2792|consensus
Probab=82.60 E-value=11 Score=31.39 Aligned_cols=90 Identities=16% Similarity=0.262 Sum_probs=55.9
Q ss_pred CccEEEEEecCCChh-hhhhhHHHHHHHHhhcCCc------ceEEEeccccc--------------------------ch
Q psy9102 119 EKDVLVEFYAPWCGH-CTNYWRNRILKVAKGFADK------FTFAISAKDDF--------------------------QH 165 (277)
Q Consensus 119 ~~~~~v~F~~~~c~~-c~~~~~~~~~~la~~~~~~------i~~~~vd~~~~--------------------------~~ 165 (277)
+++++++|.-+.||. |-..+ ..|..+.++...+ =.|+.+|-+.. .+
T Consensus 139 Gkw~LiYFGFThCPDICPdEL-eKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDEL-EKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred cceEEEEecccCCCCcChHHH-HHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 488999998888876 65442 4444444544433 26888886422 34
Q ss_pred hhhccCcccCCCCCC-----------eE--EEEcCCCceeeecC-CCCHHHHHHHHHHHh
Q psy9102 166 ELNEFGFDYVPSDKP-----------LV--FVRAEDGKKYAMKD-EFSVENLESFLTKVV 211 (277)
Q Consensus 166 ~~~~~~i~~~~~~~P-----------~i--~~~~~~~~~~~~~g-~~~~~~l~~fi~~~~ 211 (277)
+|+.|.|.. ..-| +| ++++++|+...+-| ..+.+++.+-|....
T Consensus 218 vak~yRVYf--s~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 218 VAKKYRVYF--STGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhEEee--ccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 555555543 1112 33 45577887777666 678888888877654
No 386
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=82.31 E-value=3.3 Score=31.44 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=33.0
Q ss_pred EEEEecC------CChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhh----hccCcccCCCCCCeEEEE
Q psy9102 123 LVEFYAP------WCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL----NEFGFDYVPSDKPLVFVR 185 (277)
Q Consensus 123 ~v~F~~~------~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~----~~~~i~~~~~~~P~i~~~ 185 (277)
+|.|+.+ +|+.|..+ +..|... .|.+-.+|++...... +.++-......+|.|++-
T Consensus 2 VvlYttsl~giR~t~~~C~~a-k~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~ 67 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNV-RAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVD 67 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHH-HHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEEC
Confidence 4566667 89999987 4555442 2677778887654433 333331001238888763
No 387
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=82.28 E-value=5.6 Score=32.63 Aligned_cols=77 Identities=13% Similarity=0.211 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhcHHHHh--hcCCCcEEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 198 FSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVV--TNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 198 ~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~f~~~v--~~~~~~~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
.|.+.+..-.....-+-.++.....+.| +++|..+++++...+. .+++++.+|+|.+--|++-+.-.+.|+++++
T Consensus 53 fT~~~lk~vw~~~~ldl~~~a~~G~~AP---ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~ 129 (237)
T PF00837_consen 53 FTLESLKAVWKVMWLDLFKEAKLGGPAP---NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVE 129 (237)
T ss_pred hhHHHHHHHHHHHHHHcccceeCCCCCC---CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHH
Confidence 4455554444333222222223334444 3678888888743332 3558999999998889999999999999988
Q ss_pred hC
Q psy9102 276 KA 277 (277)
Q Consensus 276 ~~ 277 (277)
+|
T Consensus 130 ~f 131 (237)
T PF00837_consen 130 DF 131 (237)
T ss_pred Hh
Confidence 76
No 388
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=81.98 E-value=5.7 Score=27.11 Aligned_cols=73 Identities=10% Similarity=-0.002 Sum_probs=50.9
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHH-HhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCC
Q psy9102 121 DVLVEFYAPWCGHCTNYWRNRILKV-AKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFS 199 (277)
Q Consensus 121 ~~~v~F~~~~c~~c~~~~~~~~~~l-a~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~ 199 (277)
.++=+|.+..-+.++..+ ..+.++ ...+.+...+-.||+.+++.+++.+.|-. .||++=..+.. .-+..|+++
T Consensus 4 ~~LrLyvag~~p~S~~ai-~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvA----TPtLIK~~P~P-~rriiGdls 77 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRAL-KTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILA----TPTLSKILPPP-VRKIIGDLS 77 (87)
T ss_pred EEEEEEEeCCCchHHHHH-HHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEE----ecHHhhcCCCC-cceeecccc
Confidence 345566666667777664 455554 44567778899999999999999999988 99975433332 345567665
No 389
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=81.83 E-value=2.4 Score=33.18 Aligned_cols=34 Identities=21% Similarity=0.565 Sum_probs=26.2
Q ss_pred EEecCCChhhhhhhHHHHHHHHhhcCCcceEEEec
Q psy9102 125 EFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISA 159 (277)
Q Consensus 125 ~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd 159 (277)
+|+.|.|+.|-.. ++.+.++..+|.+++.+-.|=
T Consensus 2 ~F~dPlc~~C~~~-E~~l~kl~~~~~~~i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGF-EPELRKLKEEYGNKIEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHH-HHHHHHHHHHS-TTEEEEEEE
T ss_pred eeeCCCChHHHHh-HHHHHHHHHHcCCcEEEEEEE
Confidence 6999999999999 799999999999986554443
No 390
>KOG0911|consensus
Probab=81.70 E-value=18 Score=29.33 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC
Q psy9102 7 NYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG 60 (277)
Q Consensus 7 ~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~ 60 (277)
+-....+..+|+.+ .++.|+.++...++.+++.+.+... |+ .+.+.....
T Consensus 33 ~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~v--p~-~~~~~~~~~ 82 (227)
T KOG0911|consen 33 KQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAV--PY-FVFFFLGEK 82 (227)
T ss_pred hhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcC--ce-eeeeecchh
Confidence 44556788888888 8899999999999999999999963 33 444543334
No 391
>PHA03075 glutaredoxin-like protein; Provisional
Probab=81.69 E-value=1.8 Score=31.04 Aligned_cols=30 Identities=20% Similarity=0.526 Sum_probs=23.2
Q ss_pred ccEEEEEecCCChhhhhhhHHHHHHHHhhcC
Q psy9102 120 KDVLVEFYAPWCGHCTNYWRNRILKVAKGFA 150 (277)
Q Consensus 120 ~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~ 150 (277)
+.++++|..|-|+.|+.. ...+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~-s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESI-SEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHH-HHHHHHhhcccc
Confidence 568999999999999987 566656555553
No 392
>KOG1752|consensus
Probab=80.35 E-value=1.5 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=21.3
Q ss_pred cEEEEEECCCCHHHhhhhHHHHHHH
Q psy9102 250 DVLVEFYAPWCGHCKKLTPVYEEVG 274 (277)
Q Consensus 250 ~~lV~f~apwC~~c~~~~p~~~~la 274 (277)
.-+|.|..+||..|.++..+|.++.
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~ 38 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLG 38 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCC
Confidence 4577899999999999999988754
No 393
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=80.16 E-value=1.5 Score=28.28 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=18.4
Q ss_pred EEEECCCCHHHhhhhHHHHHHHh
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~ 275 (277)
+.|+.+||++|++.+-.+++.+-
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl 24 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI 24 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC
Confidence 46789999999998887776543
No 394
>PRK09301 circadian clock protein KaiB; Provisional
Probab=79.89 E-value=6.9 Score=27.60 Aligned_cols=74 Identities=8% Similarity=-0.001 Sum_probs=52.3
Q ss_pred ccEEEEEecCCChhhhhhhHHHHHHH-HhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCC
Q psy9102 120 KDVLVEFYAPWCGHCTNYWRNRILKV-AKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEF 198 (277)
Q Consensus 120 ~~~~v~F~~~~c~~c~~~~~~~~~~l-a~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~ 198 (277)
..++=+|.+..-+..+..+ ..+.++ ...+.+...+-.||+.+++.+++.++|-. .||++=.-+.. .-+..|++
T Consensus 6 ~~~LrLyVag~tp~S~~ai-~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvA----TPTLIK~~P~P-~rriiGDl 79 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRAL-KTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILA----TPTLAKILPPP-VRKIIGDL 79 (103)
T ss_pred eEEEEEEEeCCCchHHHHH-HHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEE----ecHHhhcCCCC-cceeeccc
Confidence 3566667777777777664 455554 44566778899999999999999999988 99975433332 44566766
Q ss_pred C
Q psy9102 199 S 199 (277)
Q Consensus 199 ~ 199 (277)
+
T Consensus 80 s 80 (103)
T PRK09301 80 S 80 (103)
T ss_pred c
Confidence 5
No 395
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=77.59 E-value=16 Score=23.87 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=34.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccc----hhhhccCcccCCCCCCeEEEEcCCCceeeecCCCC
Q psy9102 124 VEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQ----HELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFS 199 (277)
Q Consensus 124 v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~ 199 (277)
.+|+.++|+.|.+. .-.+.+ .+ +.+-.+++.... ++.+.-+. ..+|++..- +++.. -..
T Consensus 3 ~Ly~~~~sp~~~kv-~~~L~~-----~g-i~y~~~~v~~~~~~~~~~~~~~p~----~~vP~l~~~-~~~~~-----l~e 65 (77)
T cd03041 3 ELYEFEGSPFCRLV-REVLTE-----LE-LDVILYPCPKGSPKRDKFLEKGGK----VQVPYLVDP-NTGVQ-----MFE 65 (77)
T ss_pred eEecCCCCchHHHH-HHHHHH-----cC-CcEEEEECCCChHHHHHHHHhCCC----CcccEEEeC-CCCeE-----EEc
Confidence 46778899999976 222332 23 444334443221 22221122 348987542 22321 244
Q ss_pred HHHHHHHHHH
Q psy9102 200 VENLESFLTK 209 (277)
Q Consensus 200 ~~~l~~fi~~ 209 (277)
...|.+++++
T Consensus 66 s~~I~~yL~~ 75 (77)
T cd03041 66 SADIVKYLFK 75 (77)
T ss_pred HHHHHHHHHH
Confidence 5677777764
No 396
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=75.43 E-value=19 Score=23.29 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=37.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCC-cceEEEecccccchhhhccCcccCCCCCCeEEEEcC-CCceeeecCCCCH
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFAD-KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE-DGKKYAMKDEFSV 200 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~-~~~~~~~~g~~~~ 200 (277)
+.+|+.+.|+.|++. .-.+.+ ++ .+....+|......+ +.-+.. .+|++..-+. ++.. -...
T Consensus 2 i~Ly~~~~~p~c~kv-~~~L~~-----~gi~y~~~~~~~~~~~~~-~~~~~~----~vP~l~~~~~~~~~~-----l~eS 65 (77)
T cd03040 2 ITLYQYKTCPFCCKV-RAFLDY-----HGIPYEVVEVNPVSRKEI-KWSSYK----KVPILRVESGGDGQQ-----LVDS 65 (77)
T ss_pred EEEEEcCCCHHHHHH-HHHHHH-----CCCceEEEECCchhHHHH-HHhCCC----ccCEEEECCCCCccE-----EEcH
Confidence 356888899999987 333332 22 133333333221222 222222 3898876432 2321 1345
Q ss_pred HHHHHHHHHHh
Q psy9102 201 ENLESFLTKVV 211 (277)
Q Consensus 201 ~~l~~fi~~~~ 211 (277)
..|.+++++.+
T Consensus 66 ~~I~~yL~~~~ 76 (77)
T cd03040 66 SVIISTLKTYL 76 (77)
T ss_pred HHHHHHHHHHc
Confidence 67888887765
No 397
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=75.04 E-value=4.9 Score=28.79 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=22.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc
Q psy9102 124 VEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF 163 (277)
Q Consensus 124 v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~ 163 (277)
..|+.++|+.|++. ...|.+ ..+.|-.+|..+.
T Consensus 2 ~iY~~~~C~~c~ka-~~~L~~------~~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKA-KKWLDE------HGVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHH-HHHHHH------cCCceEEecccCC
Confidence 46889999999987 344443 1366666776544
No 398
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=74.92 E-value=29 Score=25.12 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=30.3
Q ss_pred hhhhccCcccCCCCCCeEEEEc-CCCceeeecCCCCHHHHHHHHHHH
Q psy9102 165 HELNEFGFDYVPSDKPLVFVRA-EDGKKYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 165 ~~~~~~~i~~~~~~~P~i~~~~-~~~~~~~~~g~~~~~~l~~fi~~~ 210 (277)
.+.+.|++.. .++ ++++.. .++.+.++..+.+.++|-..|...
T Consensus 68 ~lr~~l~~~~--~~f-~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 68 ALRKRLRIPP--GGF-TVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred HHHHHhCCCC--Cce-EEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 5667888764 333 444555 445577888899999999988765
No 399
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=74.11 E-value=5.2 Score=28.39 Aligned_cols=33 Identities=6% Similarity=0.045 Sum_probs=20.9
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc
Q psy9102 124 VEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF 163 (277)
Q Consensus 124 v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~ 163 (277)
..|+.|+|+.|++. ...|.+- .+.+-.+|..+.
T Consensus 2 ~iy~~~~C~~crka-~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKA-RKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHH-HHHHHHc------CCCeEEEecccC
Confidence 57899999999987 3333331 255555665543
No 400
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=73.36 E-value=11 Score=28.65 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=44.4
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEecccccc-----------hhh-hccCcccCCCCCCeEEE
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDFQ-----------HEL-NEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~~-----------~~~-~~~~i~~~~~~~P~i~~ 184 (277)
.++.++|.=.|+.|+.--+. ..|+.|.++|+++ +.++..-|.+.. .+| ..||++ +|.+--
T Consensus 24 ~GkVlLIVNtASkCGfTpQY--egLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVt-----Fp~f~K 96 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQY--EGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVT-----FPMFSK 96 (162)
T ss_pred CCcEEEEEEcccccCCcHhH--HHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCce-----eeeeeE
Confidence 45788888899999987776 6888899999987 777777776432 345 458887 776643
No 401
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=73.01 E-value=31 Score=24.54 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=39.0
Q ss_pred eEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC-CcccCC-CCCCHHHHHHHHHHHh
Q psy9102 24 FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMK-DEFSVENLESFLTKVV 82 (277)
Q Consensus 24 ~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~-~~y~~~-g~~~~~~i~~fi~~~~ 82 (277)
+-|+..++.-...|.+..|+.. ..|.+++-+-.. .+|-+. .++|.+.+.+|+.+++
T Consensus 58 ~f~~a~ede~tdsLRDf~nL~d---~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 58 LFFVAGEDDMTDSLRDYTNLPE---AAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred eeeeeccchHHHHHHHhcCCCc---cCceEEEEeccccceEeCchHhcCHHHHHHHHHHhh
Confidence 5555666665556777788886 678777775333 556433 4689999999999874
No 402
>KOG2507|consensus
Probab=72.08 E-value=31 Score=30.85 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=59.3
Q ss_pred CCccEEEEEecCCChhhhhhhH-HHHH--HHHhhcCCcceEEEeccccc--chhhhccCcccCCCCCCeEEEEcCCCcee
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWR-NRIL--KVAKGFADKFTFAISAKDDF--QHELNEFGFDYVPSDKPLVFVRAEDGKKY 192 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~-~~~~--~la~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~~~~~P~i~~~~~~~~~~ 192 (277)
.++.++|.|-+.......+| . -.|. .++......+..+.|+.... ..+..-|.+.. +|+++++...|...
T Consensus 17 ~kkalfVVyI~gddE~s~kl-~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~----vPs~ffIg~sGtpL 91 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKL-NRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVS----VPSIFFIGFSGTPL 91 (506)
T ss_pred cCCeEEEEEEecCchHhhHH-hhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhccccc----ccceeeecCCCcee
Confidence 45678888888777777766 2 1222 23344444466666665433 34566677766 99999999888755
Q ss_pred -eecCCCCHHHHHHHHHHHhc
Q psy9102 193 -AMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 193 -~~~g~~~~~~l~~fi~~~~~ 212 (277)
...|-.+.++|..-|++..-
T Consensus 92 evitg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 92 EVITGFVTADELASSIEKVWL 112 (506)
T ss_pred EEeeccccHHHHHHHHHHHHH
Confidence 45688888888877776543
No 403
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=71.93 E-value=4.1 Score=27.27 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=20.3
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
++.|..|.|+-|.+....++.++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~ 25 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA 25 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh
Confidence 678999999999999999998754
No 404
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=70.83 E-value=3.1 Score=26.70 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=18.3
Q ss_pred EEEECCCCHHHhhhhHHHHHHHh
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~ 275 (277)
..|+.|+|++|++..-.+.+.+-
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l 24 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI 24 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC
Confidence 36788999999998888776543
No 405
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=70.69 E-value=4.6 Score=26.36 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=19.1
Q ss_pred EEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
+..|+.+.|++|++.+-.+++.+-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi 25 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI 25 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC
Confidence 346888999999999888877653
No 406
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.57 E-value=11 Score=30.65 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=36.8
Q ss_pred hhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHHHHhcCCCCC
Q psy9102 165 HELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDP 217 (277)
Q Consensus 165 ~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~~~~~~ 217 (277)
..++..||++ +|+++| + ..+...|..+.+-+..-|++.++.+..+
T Consensus 175 ~~A~e~gI~g----VP~fv~---d-~~~~V~Gaq~~~v~~~al~~~~~~~~~~ 219 (225)
T COG2761 175 AAAQEMGIRG----VPTFVF---D-GKYAVSGAQPYDVLEDALRQLLAEKAEE 219 (225)
T ss_pred HHHHHCCCcc----CceEEE---c-CcEeecCCCCHHHHHHHHHHHHhccccc
Confidence 4568899998 999988 2 3777899999999999999998765433
No 407
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=69.90 E-value=8 Score=28.64 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=21.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF 163 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~ 163 (277)
+..|+.++|+.|++. ...|.+- .+.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~C~ka-~~~L~~~------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKA-KAWLEEH------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHH-HHHHHHc------CCCcEEeeccCC
Confidence 457889999999987 3333331 255666665544
No 408
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=69.55 E-value=10 Score=28.11 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=30.3
Q ss_pred cchhhhccCcccCCCCCCeEEEEcCCC-----------ceeeecCCCCHHHHHHHHH
Q psy9102 163 FQHELNEFGFDYVPSDKPLVFVRAEDG-----------KKYAMKDEFSVENLESFLT 208 (277)
Q Consensus 163 ~~~~~~~~~i~~~~~~~P~i~~~~~~~-----------~~~~~~g~~~~~~l~~fi~ 208 (277)
++.+.+.|+|+. +|++++..++. ......|..+.+.-.+.+.
T Consensus 60 dP~lF~~f~I~~----VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 60 DPQWFKQFDITA----VPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred ChHHHhhcCceE----cCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 578899999998 99999988653 2345567777665544444
No 409
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=68.91 E-value=3.6 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.7
Q ss_pred EEECCCCHHHhhhhHHHHHHHh
Q psy9102 254 EFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 254 ~f~apwC~~c~~~~p~~~~la~ 275 (277)
.|+.++|+.|++..-.++..+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i 24 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL 24 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC
Confidence 5788999999998888776543
No 410
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=68.68 E-value=9.4 Score=27.18 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=34.2
Q ss_pred EecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCc
Q psy9102 126 FYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK 190 (277)
Q Consensus 126 F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~ 190 (277)
||..+|+.|.... ..+... .-.+.+.|+.+.-.....+...++++. +..-+.+....+|.
T Consensus 2 ~YDg~C~lC~~~~-~~l~~~--d~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREV-RFLRRR--DRGGRLRFVDIQSEPDQALLASYGISP--EDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHH-HHHHhc--CCCCCEEEEECCChhhhhHHHhcCcCH--HHHcCeeEEecCCC
Confidence 7899999999773 444443 112447776664333444556778764 33555443333443
No 411
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=68.66 E-value=36 Score=23.56 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=45.1
Q ss_pred ccE-EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCC-ceeeecCC
Q psy9102 120 KDV-LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG-KKYAMKDE 197 (277)
Q Consensus 120 ~~~-~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~-~~~~~~g~ 197 (277)
+++ ++.|..+. ..|..+ ...+.++|.. .++|.+...+.. .. .|++.+..++. ...+|.|-
T Consensus 19 ~pV~l~~f~~~~-~~~~e~-~~ll~e~a~l-SdkI~~~~~~~~-----------~~----~P~~~i~~~~~~~gIrF~Gi 80 (94)
T cd02974 19 NPVELVASLDDS-EKSAEL-LELLEEIASL-SDKITLEEDNDD-----------ER----KPSFSINRPGEDTGIRFAGI 80 (94)
T ss_pred CCEEEEEEeCCC-cchHHH-HHHHHHHHHh-CCceEEEEecCC-----------CC----CCEEEEecCCCcccEEEEec
Confidence 444 44555554 888888 5666676654 345665433321 12 89998876542 24678887
Q ss_pred CCHHHHHHHHHHH
Q psy9102 198 FSVENLESFLTKV 210 (277)
Q Consensus 198 ~~~~~l~~fi~~~ 210 (277)
..-.++..||..+
T Consensus 81 P~GhEf~Slilai 93 (94)
T cd02974 81 PMGHEFTSLVLAL 93 (94)
T ss_pred CCchhHHHHHHHh
Confidence 7777888887654
No 412
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=68.30 E-value=4.3 Score=26.06 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=18.6
Q ss_pred EEEECCCCHHHhhhhHHHHHHHh
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~ 275 (277)
..|+.++|+.|++.+-.+++.+-
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi 24 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV 24 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC
Confidence 46788999999999888776654
No 413
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=67.83 E-value=8 Score=27.91 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=22.0
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc
Q psy9102 124 VEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF 163 (277)
Q Consensus 124 v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~ 163 (277)
..|+.++|+.|++. ...+.+ ..+.+-.+|..+.
T Consensus 2 ~iY~~~~C~~c~ka-~~~L~~------~~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKA-RRWLEA------NGIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHH-HHHHHH------cCCceEEEecCCC
Confidence 46889999999987 344443 1366666776554
No 414
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=67.70 E-value=4.8 Score=30.74 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=20.3
Q ss_pred CcEEEEEE-CCCCHHHhhh-hHHHHHHHhh
Q psy9102 249 KDVLVEFY-APWCGHCKKL-TPVYEEVGEK 276 (277)
Q Consensus 249 ~~~lV~f~-apwC~~c~~~-~p~~~~la~~ 276 (277)
+.+++.|| +-||+.|..- .+.|.+...+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~ 59 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADE 59 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHH
Confidence 45666665 8899999887 7777776654
No 415
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=67.60 E-value=31 Score=25.80 Aligned_cols=78 Identities=18% Similarity=0.372 Sum_probs=49.0
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCH
Q psy9102 121 DVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSV 200 (277)
Q Consensus 121 ~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~ 200 (277)
.-++.|++|.|+=|..- .+.++ -++ +.+-.+..+....+-+++||...-...=|.+ ++ -|...|..-.
T Consensus 26 ~~~~vyksPnCGCC~~w-~~~mk-----~~G-f~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V-I~----Gy~vEGHVPa 93 (149)
T COG3019 26 TEMVVYKSPNCGCCDEW-AQHMK-----ANG-FEVKVVETDDFLALKRRLGIPYEMQSCHTAV-IN----GYYVEGHVPA 93 (149)
T ss_pred eeEEEEeCCCCccHHHH-HHHHH-----hCC-cEEEEeecCcHHHHHHhcCCChhhccccEEE-Ec----CEEEeccCCH
Confidence 45678899999988743 23333 122 6666666666666667788874111133333 34 2345788999
Q ss_pred HHHHHHHHHH
Q psy9102 201 ENLESFLTKV 210 (277)
Q Consensus 201 ~~l~~fi~~~ 210 (277)
+.|..|+.+-
T Consensus 94 ~aI~~ll~~~ 103 (149)
T COG3019 94 EAIARLLAEK 103 (149)
T ss_pred HHHHHHHhCC
Confidence 9999998754
No 416
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=66.68 E-value=17 Score=25.02 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcC-CC--CcccCCCCCC
Q psy9102 9 WRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE-DG--KKYAMKDEFS 70 (277)
Q Consensus 9 ~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~-~~--~~y~~~g~~~ 70 (277)
=++.|+.+|.-++++..|.+.-.... - ...-. ..|+++|++. .. ..| .|+++
T Consensus 31 eY~~f~kvA~~lr~dC~F~v~~G~~~---~-~~~~~----~~~~i~frp~~~~~~~~y--~G~~t 85 (91)
T cd03070 31 EYDNFRKVANILRDDCSFLVGFGDVT---K-PERPP----GDNIIYFPPGHNAPDMVY--LGSLT 85 (91)
T ss_pred hHHHHHHHHHHHhhcCeEEEEecccc---c-cccCC----CCCeEEECCCCCCCceEE--ccCCC
Confidence 35679999999999988877766544 1 11111 2358889875 22 678 88873
No 417
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.18 E-value=4.3 Score=26.70 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.1
Q ss_pred EEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++|++--|+.|..+...++++.-.|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc
Confidence 6799999999999999988876543
No 418
>KOG3170|consensus
Probab=65.25 E-value=19 Score=28.70 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=41.4
Q ss_pred CCCeEecchhcHHHHhhcCC--CcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 229 SGPVKVAVAKNFDEVVTNNE--KDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 229 ~~~v~~l~~~~f~~~v~~~~--~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
-+.|..+++..|-+.|.+.+ .+|+|-.|...-+.|.-+...++.||-.|
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf 140 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF 140 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC
Confidence 46799999999988885543 46777889999999999999999999775
No 419
>KOG3414|consensus
Probab=64.53 E-value=39 Score=24.84 Aligned_cols=75 Identities=7% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC--Cccc------CCCCC-CHHHHHHHHH
Q psy9102 9 WRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG--KKYA------MKDEF-SVENLESFLT 79 (277)
Q Consensus 9 ~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~--~~y~------~~g~~-~~~~i~~fi~ 79 (277)
.-+.+..+|....+-..++.+|.++++.+.+.|++... ++ +++|.++.. ..+- +.+.+ +.+++.+-++
T Consensus 41 mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p--~t-vmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 41 MDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDP--PT-VMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIE 117 (142)
T ss_pred HHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCC--ce-EEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHH
Confidence 34567788888887789999999999999999999952 22 666665333 2221 02222 5677777777
Q ss_pred HHhcCCC
Q psy9102 80 KVVAGEV 86 (277)
Q Consensus 80 ~~~~~~~ 86 (277)
....+..
T Consensus 118 ~iyRga~ 124 (142)
T KOG3414|consen 118 TIYRGAR 124 (142)
T ss_pred HHHHhhh
Confidence 6665543
No 420
>PRK12559 transcriptional regulator Spx; Provisional
Probab=64.12 E-value=13 Score=27.51 Aligned_cols=34 Identities=9% Similarity=0.221 Sum_probs=21.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF 163 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~ 163 (277)
+..|+.++|+.|++. ...|.+- .+.+-.+|..+.
T Consensus 2 i~iY~~~~C~~crkA-~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKA-KAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHH-HHHHHHc------CCCeEEEEeeCC
Confidence 457899999999987 2333331 255555555443
No 421
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=63.58 E-value=5.2 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=18.2
Q ss_pred EEEECCCCHHHhhhhHHHHHHHh
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~ 275 (277)
..|+.++|++|.+.+-.+++++-
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi 25 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELEL 25 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCC
Confidence 46778999999998877776653
No 422
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=62.75 E-value=5.6 Score=25.61 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=18.8
Q ss_pred EEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~~ 276 (277)
..|+.|+|++|++..-.+++.+-.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~ 25 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE 25 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC
Confidence 468899999999888777766543
No 423
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=61.95 E-value=5.1 Score=25.70 Aligned_cols=22 Identities=14% Similarity=0.159 Sum_probs=17.5
Q ss_pred EEECCCCHHHhhhhHHHHHHHh
Q psy9102 254 EFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 254 ~f~apwC~~c~~~~p~~~~la~ 275 (277)
.++.++|++|++.+-.+...+-
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl 24 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI 24 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC
Confidence 5778899999998887776543
No 424
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=61.81 E-value=28 Score=28.02 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=33.2
Q ss_pred CCccEEEEEecCCChh-hhhhhHHHHHHHHhhcC----Cc--ceEEEeccccc-chhhhccCc
Q psy9102 118 NEKDVLVEFYAPWCGH-CTNYWRNRILKVAKGFA----DK--FTFAISAKDDF-QHELNEFGF 172 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~-c~~~~~~~~~~la~~~~----~~--i~~~~vd~~~~-~~~~~~~~i 172 (277)
.+++++|.|.=..|+. |-.++ ..+..+-++.. .+ +.|+.+|-+.. ++..+.|+.
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l-~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTL-AELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHH-HHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 4689999998777876 76653 44555444444 33 66677776543 445555555
No 425
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=61.27 E-value=18 Score=25.75 Aligned_cols=48 Identities=27% Similarity=0.325 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCc-EEEEE
Q psy9102 5 GTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKP-LVFVR 56 (277)
Q Consensus 5 ~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P-~~~~~ 56 (277)
|+....-.+=|+.+.|.+.+..+.+.......+...||+.. .| +++++
T Consensus 42 E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~----~PaLvf~R 90 (107)
T PF07449_consen 42 ETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRR----WPALVFFR 90 (107)
T ss_dssp TCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TS----SSEEEEEE
T ss_pred ccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCcc----CCeEEEEE
Confidence 34455556678888998889999999777888999999995 56 55555
No 426
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=60.08 E-value=70 Score=23.90 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=51.7
Q ss_pred CccEEEEEecCCCh----hhhhhhHHHHHHHHhhcCCcceEEEecccccc------------------hhhhccCcccCC
Q psy9102 119 EKDVLVEFYAPWCG----HCTNYWRNRILKVAKGFADKFTFAISAKDDFQ------------------HELNEFGFDYVP 176 (277)
Q Consensus 119 ~~~~~v~F~~~~c~----~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~------------------~~~~~~~i~~~~ 176 (277)
.|+.+|+.+++... .|+..+.. +++.+-+++++.+-.-|+.... ..+..++...
T Consensus 21 ~K~L~VYLH~~~~~~t~~Fc~~~L~s--e~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~-- 96 (136)
T cd02990 21 RKLLAIYLHHDESVLSNVFCSQLLCA--ESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ-- 96 (136)
T ss_pred cceEEEEEcCCCCccHHHHHHHHhcC--HHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC--
Confidence 47899999988753 45543211 1344444556555555655432 1234455666
Q ss_pred CCCCeEEEEcCC-Cc---eeeecCCCCHHHHHHHHHHHh
Q psy9102 177 SDKPLVFVRAED-GK---KYAMKDEFSVENLESFLTKVV 211 (277)
Q Consensus 177 ~~~P~i~~~~~~-~~---~~~~~g~~~~~~l~~fi~~~~ 211 (277)
+|.+.+.-.. +. .-+..|..+++++..-+....
T Consensus 97 --fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 97 --LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred --CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 9998555422 21 336689999999988777654
No 427
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=59.90 E-value=19 Score=25.78 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=21.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF 163 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~ 163 (277)
+..|+.++|+.|++. ...|.+. + +.+-.+|..+.
T Consensus 2 i~iY~~~~C~~c~ka-~~~L~~~-----g-i~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKA-KQWLEEH-----Q-IPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHH-HHHHHHC-----C-CceEEEecCCC
Confidence 346889999999987 3444431 2 45555665443
No 428
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=58.55 E-value=16 Score=27.45 Aligned_cols=36 Identities=22% Similarity=0.541 Sum_probs=27.4
Q ss_pred hhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHHH
Q psy9102 165 HELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTK 209 (277)
Q Consensus 165 ~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~ 209 (277)
..+...||.+ +|++++ +|+. +.|..+.++|.+.|++
T Consensus 127 ~~~~~~~i~~----tPt~~i---nG~~--~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 127 QLARQLGITG----TPTFFI---NGKY--VVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHT-SS----SSEEEE---TTCE--EETTTSHHHHHHHHHH
T ss_pred HHHHHcCCcc----ccEEEE---CCEE--eCCCCCHHHHHHHHcC
Confidence 4567889988 999998 3444 4678999999998874
No 429
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=57.89 E-value=20 Score=26.55 Aligned_cols=34 Identities=6% Similarity=0.210 Sum_probs=21.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF 163 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~ 163 (277)
+..|+.++|+.|++. ...|.+ ..+.+-.+|..+.
T Consensus 2 i~iY~~~~C~~crkA-~~~L~~------~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKA-KTWLNA------HQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHH-HHHHHH------cCCCeEEEECCCC
Confidence 357889999999987 233332 1255666665543
No 430
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.86 E-value=13 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.5
Q ss_pred cCCCcEEEEEECCCCHHHhhhhHH
Q psy9102 246 NNEKDVLVEFYAPWCGHCKKLTPV 269 (277)
Q Consensus 246 ~~~~~~lV~f~apwC~~c~~~~p~ 269 (277)
-.++..+++|-++.|..|.++...
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd 63 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKD 63 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHh
Confidence 346889999999999999998654
No 431
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=56.07 E-value=33 Score=26.68 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=30.3
Q ss_pred CCccEEEEEecCCChh-hhhhhHHHHHHHHhhcC---Cc--ceEEEeccccc-chhhhccCc
Q psy9102 118 NEKDVLVEFYAPWCGH-CTNYWRNRILKVAKGFA---DK--FTFAISAKDDF-QHELNEFGF 172 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~-c~~~~~~~~~~la~~~~---~~--i~~~~vd~~~~-~~~~~~~~i 172 (277)
.+++++|.|.-..|+. |-.++ ..+.++.+.+. .+ +.++.+|-... ++.+++|.-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l-~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~ 111 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTL-ANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAK 111 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHH-HHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHH-HHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHH
Confidence 4689999998888854 77652 44554444333 23 55566665432 444444443
No 432
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=53.11 E-value=59 Score=20.90 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=40.3
Q ss_pred EEecCCChhhhhhhHHHHHHHHhhcCC-cceEEEecccccch-hhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHH
Q psy9102 125 EFYAPWCGHCTNYWRNRILKVAKGFAD-KFTFAISAKDDFQH-ELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVEN 202 (277)
Q Consensus 125 ~F~~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd~~~~~~-~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~ 202 (277)
+|+.++|+.|++.+ ++-.+++ .+.+..++..+... +....+... +|++. .+ |... .+...
T Consensus 1 Ly~~~~Sp~~~kv~------~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~----vPvL~-~~--g~~l-----~dS~~ 62 (75)
T PF13417_consen 1 LYGFPGSPYSQKVR------LALEEKGIPYELVPVDPEEKRPEFLKLNPKGK----VPVLV-DD--GEVL-----TDSAA 62 (75)
T ss_dssp EEEETTSHHHHHHH------HHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSB----SSEEE-ET--TEEE-----ESHHH
T ss_pred CCCcCCChHHHHHH------HHHHHcCCeEEEeccCcccchhHHHhhccccc----ceEEE-EC--CEEE-----eCHHH
Confidence 46788999999872 3333333 24555555444322 333333333 99987 44 3222 35678
Q ss_pred HHHHHHHHhc
Q psy9102 203 LESFLTKVVA 212 (277)
Q Consensus 203 l~~fi~~~~~ 212 (277)
|.+++++...
T Consensus 63 I~~yL~~~~~ 72 (75)
T PF13417_consen 63 IIEYLEERYP 72 (75)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHHcC
Confidence 8888887654
No 433
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.65 E-value=24 Score=27.54 Aligned_cols=29 Identities=24% Similarity=0.603 Sum_probs=24.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADK 152 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~ 152 (277)
+.+|+.+.|+.|-.. .+.+.++.++|.+.
T Consensus 3 i~~~~D~~cp~c~~~-~~~l~~l~~~~~~~ 31 (193)
T cd03025 3 LYYFIDPLCGWCYGF-EPLLEKLKEEYGGG 31 (193)
T ss_pred EEEEECCCCchhhCc-hHHHHHHHHHhCCC
Confidence 567889999999998 58999999998433
No 434
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=50.92 E-value=19 Score=28.10 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=28.1
Q ss_pred chhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHH
Q psy9102 164 QHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLT 208 (277)
Q Consensus 164 ~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~ 208 (277)
...+..+|+.+ +|++++ +|+ +.+.|....+.|.+.|+
T Consensus 157 ~~~a~~~gv~G----vP~~vv---~g~-~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEARQLGVFG----VPTFVV---NGK-YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHTTCSS----SSEEEE---TTT-EEEESCSSHHHHHHHH-
T ss_pred HHHHHHcCCcc----cCEEEE---CCE-EEEECCCCHHHHHHHhC
Confidence 34567899998 999988 333 77889888888887763
No 435
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=50.00 E-value=56 Score=24.21 Aligned_cols=40 Identities=18% Similarity=0.479 Sum_probs=31.3
Q ss_pred hhcHHHHh-hcCCCcEEEEEECCCCHHHhhhhHHHHHHHhh
Q psy9102 237 AKNFDEVV-TNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276 (277)
Q Consensus 237 ~~~f~~~v-~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~ 276 (277)
+-..++.+ ...++.++|-|.-.|-+.|.++=.++.++|..
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~ 48 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEK 48 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHH
Confidence 45566666 44578899999999999999999999998864
No 436
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=49.14 E-value=30 Score=24.85 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=18.9
Q ss_pred cchhhhccCcccCCCCCCeEEEEcC
Q psy9102 163 FQHELNEFGFDYVPSDKPLVFVRAE 187 (277)
Q Consensus 163 ~~~~~~~~~i~~~~~~~P~i~~~~~ 187 (277)
++.+.++|+|+. +|++++.++
T Consensus 60 dP~~F~~y~I~~----VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITA----VPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceE----cCEEEEEcC
Confidence 588999999998 999998886
No 437
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=49.10 E-value=57 Score=23.28 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=33.8
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCc-ceEEEeccccc
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDF 163 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~-i~~~~vd~~~~ 163 (277)
.++.++|.=.|+.|+.-..+ ..|.+|.++|+++ +.++..-|.+.
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~qy--~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTKQY--KQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHHHH--HHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCcccc--HHHHHHHHHHhcCCeEEEeeehHHh
Confidence 45788888889999988854 6899999999864 77766666543
No 438
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=47.96 E-value=15 Score=24.79 Aligned_cols=53 Identities=6% Similarity=0.077 Sum_probs=38.6
Q ss_pred EecCCChhhhhhhHHHHHHHHhh-cCCcceEEEecccccchhhhccCcccCCCCCCeEE
Q psy9102 126 FYAPWCGHCTNYWRNRILKVAKG-FADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVF 183 (277)
Q Consensus 126 F~~~~c~~c~~~~~~~~~~la~~-~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~ 183 (277)
|-+..-+.+... ...+..+.+. ..+.+.+-.||+.+.+..++.++|-. .||++
T Consensus 3 yV~g~~~~s~~a-~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivA----tPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERA-IENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVA----TPTLI 56 (82)
T ss_dssp EESSBHHHHHHH-HHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEEC----HHHHH
T ss_pred EECCCChHHHHH-HHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeee----cceEe
Confidence 334434444555 3566666665 55669999999999999999999987 88875
No 439
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=46.16 E-value=44 Score=25.93 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=27.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCC-cceEEEec
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFAD-KFTFAISA 159 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~-~i~~~~vd 159 (277)
+.+|+..-||.|-.. .+.+.++.+.+.+ ++.+.-+.
T Consensus 2 i~~~~D~~Cp~cy~~-~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLA-SPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHH-HHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEeCCCHHHHHH-HHHHHHHHHHhcCCcEEEeccc
Confidence 678899999999998 6899999999944 24443333
No 440
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=45.80 E-value=27 Score=28.61 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=31.6
Q ss_pred cCCccEEEEEecCCChhhhhhhHHHHHHHHhhcC----CcceEEEeccc
Q psy9102 117 NNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA----DKFTFAISAKD 161 (277)
Q Consensus 117 ~~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~----~~i~~~~vd~~ 161 (277)
..+..++|.+-..+|..|... ...|+.|..++. ..|.|+.|+--
T Consensus 24 ~~G~VtvVALL~asc~~c~~q-a~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQ-ASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHH-HHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 345678888888899999975 356665554443 34999999954
No 441
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=43.33 E-value=28 Score=28.53 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=20.1
Q ss_pred CcEEEEEECCCCHHHhhhhHHHHHH
Q psy9102 249 KDVLVEFYAPWCGHCKKLTPVYEEV 273 (277)
Q Consensus 249 ~~~lV~f~apwC~~c~~~~p~~~~l 273 (277)
...++.|...-|++|+...|.+.+.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~ 109 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKK 109 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHH
Confidence 5688888899999998877777764
No 442
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=42.86 E-value=17 Score=28.41 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEEcccch
Q psy9102 8 YWRNRILKVAKGFADKFTFAISAKDDF 34 (277)
Q Consensus 8 ~~~~~f~~~A~~~~~~~~f~~~~~~~~ 34 (277)
...+.+.++...+..++.|-.+.....
T Consensus 13 ~~E~~l~kl~~~~~~~i~~~~i~~~~~ 39 (176)
T PF13743_consen 13 GFEPELRKLKEEYGNKIEFRFIPGGLM 39 (176)
T ss_dssp HHHHHHHHHHHHS-TTEEEEEEE--SS
T ss_pred HhHHHHHHHHHHcCCcEEEEEEEccch
Confidence 356778888888888887777766654
No 443
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=42.40 E-value=93 Score=23.28 Aligned_cols=66 Identities=21% Similarity=0.311 Sum_probs=42.9
Q ss_pred CCccEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCC
Q psy9102 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED 188 (277)
Q Consensus 118 ~~~~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~ 188 (277)
.+++-.|.+|...|+.|.... ..+.+ ..-.+.+.|+.+..+.........|+.. ...=++.+..++
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~v-rfLi~--~D~~~~i~f~~~q~e~g~~~l~~~~l~~--~~~~s~~~~~~g 70 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWV-RFLIR--RDQGGRIRFAALQSEPGQALLEAAGLDP--EDVDSVLLVEAG 70 (137)
T ss_pred CCCCCEEEEECCcchhHHHHH-HHHHH--hccCCcEEEEeccCchhhhHHhhcCCCh--hhhheeeEecCC
Confidence 446788889999999998652 33322 2233459999988877777778888864 322234444433
No 444
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=41.97 E-value=19 Score=22.84 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=17.5
Q ss_pred EEEECCCCHHHhhhhHHHHHHHh
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~ 275 (277)
..|+.+.|+.|.+..-.+++.+-
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~ 24 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI 24 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC
Confidence 35788999999988877766543
No 445
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=41.96 E-value=85 Score=21.00 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHhcC--CceEEEEEcccc
Q psy9102 6 TNYWRNRILKVAKGFA--DKFTFAISAKDD 33 (277)
Q Consensus 6 ~~~~~~~f~~~A~~~~--~~~~f~~~~~~~ 33 (277)
+...++.+.++.++++ +++.|+.+..++
T Consensus 16 c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~ 45 (95)
T PF13905_consen 16 CKKELPKLKELYKKYKKKDDVEFVFVSLDE 45 (95)
T ss_dssp HHHHHHHHHHHHHHHTTTTTEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 4556677777777776 567777766654
No 446
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=40.61 E-value=29 Score=23.44 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=19.2
Q ss_pred EEEEEECCCCHHHhhhhHHHHHHHh
Q psy9102 251 VLVEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 251 ~lV~f~apwC~~c~~~~p~~~~la~ 275 (277)
.+..|+.+.|++|++.+-.+++.+-
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl 42 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI 42 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC
Confidence 3566788899999998877776553
No 447
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.49 E-value=21 Score=25.01 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=16.8
Q ss_pred ECCCCHHHhhhhHHHHHHH
Q psy9102 256 YAPWCGHCKKLTPVYEEVG 274 (277)
Q Consensus 256 ~apwC~~c~~~~p~~~~la 274 (277)
-.|.||++.+...++..++
T Consensus 26 ~~P~CGFS~~~vqiL~~~g 44 (105)
T COG0278 26 EFPQCGFSAQAVQILSACG 44 (105)
T ss_pred CCCCCCccHHHHHHHHHcC
Confidence 3789999999999998876
No 448
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=39.88 E-value=34 Score=28.48 Aligned_cols=69 Identities=13% Similarity=0.243 Sum_probs=39.0
Q ss_pred CeEEeecccceeeeecCCccEEEEEecCCChhhhhh-hHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCC
Q psy9102 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNY-WRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKP 180 (277)
Q Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~v~F~~~~c~~c~~~-~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P 180 (277)
....+++.++ ...+|+.+++..+.||+.|... | ..+..| .+|.+ +.+.... +.. .... +..|
T Consensus 45 ~~~kvsn~d~----~~~Gk~~v~~igw~gCP~~A~~sW-~L~~AL-srfGn-~~l~~~~-S~~------~d~~---pn~P 107 (249)
T PF06053_consen 45 NFFKVSNQDL----APNGKPEVIFIGWEGCPYCAAESW-ALYIAL-SRFGN-FSLEYHY-SDP------YDNY---PNTP 107 (249)
T ss_pred ceeeecCccc----CCCCeeEEEEEecccCccchhhHH-HHHHHH-HhcCC-eeeEEee-cCc------ccCC---CCCC
Confidence 3444454443 3567899999999999999965 4 333333 34444 4222111 111 1121 3489
Q ss_pred eEEEEcC
Q psy9102 181 LVFVRAE 187 (277)
Q Consensus 181 ~i~~~~~ 187 (277)
++.|.+.
T Consensus 108 tl~F~~~ 114 (249)
T PF06053_consen 108 TLIFNNY 114 (249)
T ss_pred eEEEecC
Confidence 9888765
No 449
>KOG1672|consensus
Probab=39.41 E-value=66 Score=25.65 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=37.7
Q ss_pred CCeEecc-hhcHHHHhhcCCCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 230 GPVKVAV-AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 230 ~~v~~l~-~~~f~~~v~~~~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
+....+. +..|-+.+..+ ..+++-||-|--..|+-|-..++.||+.+
T Consensus 66 G~y~ev~~Ekdf~~~~~kS-~kVVcHFY~~~f~RCKimDkhLe~LAk~h 113 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVKKS-EKVVCHFYRPEFFRCKIMDKHLEILAKRH 113 (211)
T ss_pred ceEEEeccHHHHHHHhhcC-ceEEEEEEcCCCcceehHHHHHHHHHHhc
Confidence 3445554 67788887664 56999999999999999999999999864
No 450
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=38.41 E-value=38 Score=24.30 Aligned_cols=33 Identities=6% Similarity=0.137 Sum_probs=20.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDD 162 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~ 162 (277)
+..|+.|.|..|++. ...|.+- .+.+-.+|..+
T Consensus 2 i~iy~~p~C~~crkA-~~~L~~~------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQ-KALLEAA------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHH-HHHHHHc------CCCcEEeehhc
Confidence 457889999999987 3333331 25555555543
No 451
>KOG2640|consensus
Probab=38.36 E-value=8.2 Score=32.88 Aligned_cols=26 Identities=27% Similarity=0.687 Sum_probs=21.1
Q ss_pred CcEEEEEECCCCHHHhhhhHHHHHHH
Q psy9102 249 KDVLVEFYAPWCGHCKKLTPVYEEVG 274 (277)
Q Consensus 249 ~~~lV~f~apwC~~c~~~~p~~~~la 274 (277)
.++=+.||+.||++.+...|.++-..
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~ 102 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRS 102 (319)
T ss_pred CcccccchhcccCcccccCcccchhh
Confidence 45777899999999999888776544
No 452
>KOG3171|consensus
Probab=38.17 E-value=81 Score=25.58 Aligned_cols=73 Identities=15% Similarity=0.303 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHHHHhcCCceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCC--Ccc-----cCCCCCCHHHHHH
Q psy9102 4 TGTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG--KKY-----AMKDEFSVENLES 76 (277)
Q Consensus 4 ~~~~~~~~~f~~~A~~~~~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~--~~y-----~~~g~~~~~~i~~ 76 (277)
++++.+-....=+|..+ ..++|+.+..+... .-..|.... .|+++|..+.. -.| ++..++...++.+
T Consensus 172 ~gcealn~~~~cLAAey-P~vKFckikss~~g-as~~F~~n~----lP~LliYkgGeLIgNFv~va~qlgedffa~dle~ 245 (273)
T KOG3171|consen 172 KGCEALNSSLTCLAAEY-PIVKFCKIKSSNTG-ASDRFSLNV----LPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLES 245 (273)
T ss_pred chHHHHhhhHHHhhccC-CceeEEEeeecccc-chhhhcccC----CceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHH
Confidence 35677777888889888 78999999888652 134555564 47666664332 222 2345678888999
Q ss_pred HHHHHh
Q psy9102 77 FLTKVV 82 (277)
Q Consensus 77 fi~~~~ 82 (277)
|++.+-
T Consensus 246 FL~e~g 251 (273)
T KOG3171|consen 246 FLNEYG 251 (273)
T ss_pred HHHHcC
Confidence 998764
No 453
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=37.85 E-value=2.2e+02 Score=23.15 Aligned_cols=72 Identities=6% Similarity=0.129 Sum_probs=48.7
Q ss_pred eEEEEcCCCceeeecC----CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEecchhcHHHHhhcCCCcEEEEEE
Q psy9102 181 LVFVRAEDGKKYAMKD----EFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFY 256 (277)
Q Consensus 181 ~i~~~~~~~~~~~~~g----~~~~~~l~~fi~~~~~~~~~~~~ks~~~p~~~~~~v~~l~~~~f~~~v~~~~~~~lV~f~ 256 (277)
.+++...++.....+. +.+...+...+++++.. ..+|.+.+...-++...++.+++...+ .+.+.|+
T Consensus 84 ~vYIHT~~~~vI~v~p~~R~Prny~RFiGLmeqLlk~--------~~i~~~~~e~Ll~v~~~~l~d~l~~~~-~~~ill~ 154 (223)
T COG1756 84 RVYIHTRNDYVIEVNPETRLPRNYNRFIGLMEQLLKK--------GRIPSNGGETLLEVEKNPLTDLLPENN-KVTILLH 154 (223)
T ss_pred eEEEEecCCEEEEECCCccCCCCHHHHHHHHHHHHhc--------CCcCCCCCcEeeeeecCcHHHhccccC-ceEEEEc
Confidence 3455555554444432 67778888888888853 335544445666777888999987766 7888999
Q ss_pred CCCCH
Q psy9102 257 APWCG 261 (277)
Q Consensus 257 apwC~ 261 (277)
.+.|.
T Consensus 155 e~G~~ 159 (223)
T COG1756 155 EKGEL 159 (223)
T ss_pred CCCCc
Confidence 88765
No 454
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=37.35 E-value=75 Score=21.15 Aligned_cols=38 Identities=24% Similarity=0.634 Sum_probs=22.4
Q ss_pred cccCCCCCCeEEEEcCCCce---eeecCCCCHHHHHHHHHHH
Q psy9102 172 FDYVPSDKPLVFVRAEDGKK---YAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 172 i~~~~~~~P~i~~~~~~~~~---~~~~g~~~~~~l~~fi~~~ 210 (277)
++..+..-|++.+++.+|+. ... ..++.++|.+|+.+.
T Consensus 35 vk~i~G~~P~L~l~d~~g~~~E~i~i-~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 35 VKYIPGAPPELVLLDEDGEEVERINI-EKWKTDEIEEFLNEK 75 (78)
T ss_dssp EEEESS---EEEEE-SSS--SEEEE--SSSSHCHHHHHHHHH
T ss_pred EEEeCCCCCEEEEEcCCCCEEEEEEc-ccCCHHHHHHHHHHh
Confidence 33333447999999977652 233 468999999999864
No 455
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=34.63 E-value=65 Score=22.96 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=20.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc
Q psy9102 124 VEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF 163 (277)
Q Consensus 124 v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~ 163 (277)
..|+.+.|..|++.. ..+.+ . .+.+..+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~-~~L~~----~--~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNAL-ALLEE----A--GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHH-HHHHH----C--CCCeEEEecccC
Confidence 468899999999872 33333 1 255555665443
No 456
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.87 E-value=1.6e+02 Score=20.38 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=45.6
Q ss_pred EEEEecCC-Chhhhhh-----hHHHHH--HHHhhcCCc-ceEEEecccccc------hhhhccCcccCCCCCCeEEEEcC
Q psy9102 123 LVEFYAPW-CGHCTNY-----WRNRIL--KVAKGFADK-FTFAISAKDDFQ------HELNEFGFDYVPSDKPLVFVRAE 187 (277)
Q Consensus 123 ~v~F~~~~-c~~c~~~-----~~~~~~--~la~~~~~~-i~~~~vd~~~~~------~~~~~~~i~~~~~~~P~i~~~~~ 187 (277)
++.|.|.. |..|..+ . -.|. .+.++|.++ +.+-.||+...+ .++.+..-.. --+|.+++-+
T Consensus 7 l~VyGae~iCASCV~aPtsKdt-~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~de--y~YPlivved- 82 (106)
T COG4837 7 LVVYGAEVICASCVNAPTSKDT-YEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDE--YFYPLIVVED- 82 (106)
T ss_pred EEEecchhhhHHhcCCCcchhH-HHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhccc--ccceEEEEcc-
Confidence 44455544 8888765 1 1233 356788886 888888885322 2222211111 2378877744
Q ss_pred CCceeeecCCCCHHHHHHHHHHH
Q psy9102 188 DGKKYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 188 ~~~~~~~~g~~~~~~l~~fi~~~ 210 (277)
.+.-.|.....++-+++.+.
T Consensus 83 ---eiVaeGnprlKdiy~~m~d~ 102 (106)
T COG4837 83 ---EIVAEGNPRLKDIYRVMDDK 102 (106)
T ss_pred ---eEeecCCchHHHHHHHHHHh
Confidence 23335666677777776653
No 457
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=33.49 E-value=1.6e+02 Score=20.24 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=37.0
Q ss_pred Chhhhhh-----hHHHHH-HHHhhcCCc-ceEEEecccccch------hhhccCcccCCCCCCeEEEEcCCCceeeecCC
Q psy9102 131 CGHCTNY-----WRNRIL-KVAKGFADK-FTFAISAKDDFQH------ELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDE 197 (277)
Q Consensus 131 c~~c~~~-----~~~~~~-~la~~~~~~-i~~~~vd~~~~~~------~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~ 197 (277)
|..|..+ .-..|+ .|.++|.++ +.+-.||+...+. ++++..=.. --||.+++-+ .+.-.|.
T Consensus 9 CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede--~fYPlV~i~~----eiV~EGn 82 (93)
T PF07315_consen 9 CASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDE--LFYPLVVIND----EIVAEGN 82 (93)
T ss_dssp -GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTS--S-SSEEEETT----EEEEESS
T ss_pred chhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcc--cccceEEECC----EEEecCC
Confidence 8888766 001222 467899987 9999999875432 222211111 1278887743 3334566
Q ss_pred CCHHHHHHHHH
Q psy9102 198 FSVENLESFLT 208 (277)
Q Consensus 198 ~~~~~l~~fi~ 208 (277)
.....|-++++
T Consensus 83 p~LK~I~~~~e 93 (93)
T PF07315_consen 83 PQLKDIYEEME 93 (93)
T ss_dssp --HHHHHHHHH
T ss_pred ccHHHHHHhhC
Confidence 66667766653
No 458
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.80 E-value=2.6e+02 Score=22.35 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=29.9
Q ss_pred cchhhhccCcccCCC--CCCeEEEEcCCCcee-----eecCCCCHHHHHHHHHHHh
Q psy9102 163 FQHELNEFGFDYVPS--DKPLVFVRAEDGKKY-----AMKDEFSVENLESFLTKVV 211 (277)
Q Consensus 163 ~~~~~~~~~i~~~~~--~~P~i~~~~~~~~~~-----~~~g~~~~~~l~~fi~~~~ 211 (277)
...+++.||+-.... .+-.+++++++|... ...=.++.+++..-|+.+.
T Consensus 106 ~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 106 KGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred chhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 345778888864111 234567888887532 2222588888888777553
No 459
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=32.66 E-value=39 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=18.8
Q ss_pred cEEEEEECCCCHHHhhhhHHHHH
Q psy9102 250 DVLVEFYAPWCGHCKKLTPVYEE 272 (277)
Q Consensus 250 ~~lV~f~apwC~~c~~~~p~~~~ 272 (277)
--++.|++|.||=|..-...++.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~ 48 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA 48 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh
Confidence 35678999999999988877764
No 460
>KOG1364|consensus
Probab=32.54 E-value=80 Score=27.52 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=40.7
Q ss_pred cceEEEecccccchhhhccCcccCCCCCCeEEEEcCC-Cc-eeeecCCCCHHHHHHHHHHHhc
Q psy9102 152 KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED-GK-KYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 152 ~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~-~~-~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
.+..+..|.++...+...|.+.. +|.|+++++. |+ ..+..|.+.++++..=++++++
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~----~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISS----LPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred eEEEEeeccCCCCchhhheeccC----CceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 36666778777788889999988 9999888753 44 4455677777766655555554
No 461
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=31.73 E-value=1e+02 Score=21.82 Aligned_cols=30 Identities=20% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHH--hhcCCc
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVA--KGFADK 152 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la--~~~~~~ 152 (277)
+-.||.+-||.|++++...|..+. ..+.+.
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~ 34 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFPVWTYEKLSDI 34 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHHHHHHhhccce
Confidence 446788889999987555565532 455554
No 462
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=31.00 E-value=80 Score=22.57 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=20.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEeccccc
Q psy9102 124 VEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDF 163 (277)
Q Consensus 124 v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~ 163 (277)
..|+.+.|..|++. ...+.+ ..+.+..+|..+.
T Consensus 2 ~iy~~~~C~t~rkA-~~~L~~------~~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNT-LALLED------KGIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHH-HHHHHH------CCCCeEEEeccCC
Confidence 46889999999987 233333 1255555665443
No 463
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=30.60 E-value=43 Score=24.70 Aligned_cols=35 Identities=9% Similarity=0.252 Sum_probs=25.9
Q ss_pred chhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHH
Q psy9102 164 QHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 164 ~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi 207 (277)
...+..+||.+ +||+++- |+ .+.|..+.+.|.+.|
T Consensus 119 ~~~~~~~gi~g----tPt~~v~---g~--~~~G~~~~~~l~~~i 153 (154)
T cd03023 119 RQLARALGITG----TPAFIIG---DT--VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHcCCCc----CCeEEEC---CE--EecCCCCHHHHHHHh
Confidence 34567889988 9998873 32 457888888887765
No 464
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=30.52 E-value=2.1e+02 Score=20.61 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCC-ceE-EEEEcccchH-----------HHhhhcCCCCCCCCCcEEEEEcCCCCcccCCCCCCHHHHH
Q psy9102 9 WRNRILKVAKGFAD-KFT-FAISAKDDFQ-----------HELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLE 75 (277)
Q Consensus 9 ~~~~f~~~A~~~~~-~~~-f~~~~~~~~~-----------~~~~~~~v~~~~~~~P~~~~~~~~~~~y~~~g~~~~~~i~ 75 (277)
..+.+.+....+.. ++. |..+...... .+.+.|++.+. .+-++|+-.+.|.+......++.+.|-
T Consensus 28 q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~--~f~~vLiGKDG~vK~r~~~p~~~~~lf 105 (118)
T PF13778_consen 28 QLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPG--GFTVVLIGKDGGVKLRWPEPIDPEELF 105 (118)
T ss_pred HHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCC--ceEEEEEeCCCcEEEecCCCCCHHHHH
Confidence 34455554445543 344 4444444433 67889998864 343666665444333227889999999
Q ss_pred HHHHHH
Q psy9102 76 SFLTKV 81 (277)
Q Consensus 76 ~fi~~~ 81 (277)
..|...
T Consensus 106 ~~ID~M 111 (118)
T PF13778_consen 106 DTIDAM 111 (118)
T ss_pred HHHhCC
Confidence 888643
No 465
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.83 E-value=4.1e+02 Score=23.74 Aligned_cols=79 Identities=13% Similarity=0.251 Sum_probs=51.7
Q ss_pred cEEEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCH
Q psy9102 121 DVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSV 200 (277)
Q Consensus 121 ~~~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~ 200 (277)
..+=-|++-.|..|-... +.+.-+ .-++.+|.-..||..-.++-.+.-+|-. +||+++-.. .+ -.|.++.
T Consensus 118 ~~FETy~SltC~nCPDVV-QALN~m-svlNp~I~H~~IdGa~Fq~Evear~IMa----VPtvflnGe---~f-g~GRmtl 187 (520)
T COG3634 118 FHFETYFSLTCHNCPDVV-QALNLM-SVLNPRIKHTAIDGALFQDEVEARNIMA----VPTVFLNGE---EF-GQGRMTL 187 (520)
T ss_pred eeEEEEEEeeccCChHHH-HHHHHH-HhcCCCceeEEecchhhHhHHHhcccee----cceEEEcch---hh-cccceeH
Confidence 455556677799997652 444433 3455568888899887777777778887 999987431 11 2456677
Q ss_pred HHHHHHHHH
Q psy9102 201 ENLESFLTK 209 (277)
Q Consensus 201 ~~l~~fi~~ 209 (277)
++|..-|..
T Consensus 188 eeilaki~~ 196 (520)
T COG3634 188 EEILAKIDT 196 (520)
T ss_pred HHHHHHhcC
Confidence 766665543
No 466
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=59 Score=26.58 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=29.3
Q ss_pred hhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHHHHh
Q psy9102 165 HELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211 (277)
Q Consensus 165 ~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~ 211 (277)
.....+|+.+ .|++++-+. .+.|..+.++|.+.|...+
T Consensus 206 ~~a~~~gv~g----TPt~~v~~~-----~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNG----TPTFIVNGK-----LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCc----CCeEEECCe-----eecCCCCHHHHHHHHHHhh
Confidence 4567789988 999998663 5678888889988887643
No 467
>PF11539 DUF3228: Protein of unknown function (DUF3228); InterPro: IPR021610 This family of proteins has no known function. ; PDB: 2PD0_B 4FBD_B.
Probab=28.88 E-value=25 Score=27.68 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=17.5
Q ss_pred ecchhcHHHHhhcC---CCcEEEEEECCCCHH
Q psy9102 234 VAVAKNFDEVVTNN---EKDVLVEFYAPWCGH 262 (277)
Q Consensus 234 ~l~~~~f~~~v~~~---~~~~lV~f~apwC~~ 262 (277)
..+.+.|.+.+.+. ...-||.-|||.|.|
T Consensus 24 ~~~ke~F~~kvne~~~~~~~~l~dGYAPFCKH 55 (197)
T PF11539_consen 24 PCDKEEFVEKVNEIYKEGPAKLVDGYAPFCKH 55 (197)
T ss_dssp -S-HHHHHHHHHHHHHCCT--EEE-SSTTEEE
T ss_pred ccCHHHHHHHHHHHHhcCCCccccccCcceee
Confidence 36677777766443 455689999999976
No 468
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=28.66 E-value=2.6e+02 Score=21.54 Aligned_cols=47 Identities=11% Similarity=0.245 Sum_probs=32.0
Q ss_pred cccchhhhccCcccCCCCCCeEEEEcCCCc-eeeecCCCCHHHHHHHHHHH
Q psy9102 161 DDFQHELNEFGFDYVPSDKPLVFVRAEDGK-KYAMKDEFSVENLESFLTKV 210 (277)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~-~~~~~g~~~~~~l~~fi~~~ 210 (277)
+.+..+.+..++.. .--+|++.+.+|+ .+...|.++.+++.+++.-+
T Consensus 110 D~~G~~~~aW~L~~---~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 110 DSNGVVRKAWQLQE---ESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred cCCCceeccccCCC---CCceEEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 33445556666653 2346778887876 45567999999999988654
No 469
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=27.90 E-value=35 Score=25.38 Aligned_cols=14 Identities=21% Similarity=0.774 Sum_probs=10.5
Q ss_pred CCCCHHHhhhhHHH
Q psy9102 257 APWCGHCKKLTPVY 270 (277)
Q Consensus 257 apwC~~c~~~~p~~ 270 (277)
.+=||+|+|+.-.|
T Consensus 85 ~sPCG~CRQ~i~Ef 98 (134)
T COG0295 85 VSPCGACRQVLAEF 98 (134)
T ss_pred cCCcHHHHHHHHHh
Confidence 35699999976554
No 470
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=26.37 E-value=77 Score=22.95 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=12.9
Q ss_pred EEEEecCCChhhhhh
Q psy9102 123 LVEFYAPWCGHCTNY 137 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~ 137 (277)
+..|+.|.|..|++.
T Consensus 3 itiy~~p~C~t~rka 17 (117)
T COG1393 3 ITIYGNPNCSTCRKA 17 (117)
T ss_pred EEEEeCCCChHHHHH
Confidence 457889999999987
No 471
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=25.64 E-value=1.5e+02 Score=23.20 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=28.0
Q ss_pred cchhcHHHHhhcCC-CcEEEEEECCCCHHHhhhhHHHHHH
Q psy9102 235 AVAKNFDEVVTNNE-KDVLVEFYAPWCGHCKKLTPVYEEV 273 (277)
Q Consensus 235 l~~~~f~~~v~~~~-~~~lV~f~apwC~~c~~~~p~~~~l 273 (277)
-.+.++-+.+.+++ +++.||||-|.-..-.++...++.|
T Consensus 129 ~kEhtrikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tl 168 (191)
T PF09499_consen 129 TKEHTRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTL 168 (191)
T ss_pred hhHHHHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHH
Confidence 34566777776654 8999999999877776666666555
No 472
>PHA02151 hypothetical protein
Probab=25.44 E-value=46 Score=25.36 Aligned_cols=15 Identities=40% Similarity=1.037 Sum_probs=12.7
Q ss_pred CCCcEEEEEECCCCH
Q psy9102 247 NEKDVLVEFYAPWCG 261 (277)
Q Consensus 247 ~~~~~lV~f~apwC~ 261 (277)
.+.+.+|.||..||-
T Consensus 202 r~h~~~v~fy~kwct 216 (217)
T PHA02151 202 RNHDRYVHFYKKWCT 216 (217)
T ss_pred ccCceEEEEehhhcc
Confidence 357889999999995
No 473
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=25.39 E-value=3e+02 Score=20.83 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcC-CceEEEEEcccc-----------------------------hHHHhhhcCCCCCCCCCcEEEEEc
Q psy9102 8 YWRNRILKVAKGFA-DKFTFAISAKDD-----------------------------FQHELNEFGFDYVPSDKPLVFVRA 57 (277)
Q Consensus 8 ~~~~~f~~~A~~~~-~~~~f~~~~~~~-----------------------------~~~~~~~~~v~~~~~~~P~~~~~~ 57 (277)
..++.+.++++++. .++.|+.+..+. ...+.+.||+.. .|..++.+
T Consensus 42 ~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~----~P~~~lid 117 (171)
T cd02969 42 AIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAYGAAC----TPDFFLFD 117 (171)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHcCCCc----CCcEEEEC
Confidence 34566777777775 356666665431 123455777773 46444444
Q ss_pred CCC-CcccC---------CCCCCHHHHHHHHHHHhcCCCCc
Q psy9102 58 EDG-KKYAM---------KDEFSVENLESFLTKVVAGEVDP 88 (277)
Q Consensus 58 ~~~-~~y~~---------~g~~~~~~i~~fi~~~~~~~~~~ 88 (277)
.+| ..|.- .+..+.+++.+-|...+.+.-.+
T Consensus 118 ~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 118 PDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred CCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 455 55520 12346688999998888775444
No 474
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=25.11 E-value=37 Score=29.65 Aligned_cols=31 Identities=29% Similarity=0.584 Sum_probs=20.6
Q ss_pred eEecchhcHHHHhhcCCCcEEEEEECCCCHHHhh
Q psy9102 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKK 265 (277)
Q Consensus 232 v~~l~~~~f~~~v~~~~~~~lV~f~apwC~~c~~ 265 (277)
|.+-+++.-.+.. ..|.+|.-|.|-|++|+.
T Consensus 66 iVe~VG~gVt~vk---pGDhVI~~f~p~CG~C~~ 96 (366)
T COG1062 66 IVEAVGEGVTSVK---PGDHVILLFTPECGQCKF 96 (366)
T ss_pred EEEEecCCccccC---CCCEEEEcccCCCCCCch
Confidence 4444454444432 468899999999999864
No 475
>KOG1422|consensus
Probab=24.66 E-value=3.8e+02 Score=21.75 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=40.7
Q ss_pred CChhhhhhhHHHHHHHHhhcCCcceEEEecccccchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHHH
Q psy9102 130 WCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTK 209 (277)
Q Consensus 130 ~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~ 209 (277)
.|+.|++++ -.+. .+-. .+.+-.||...-+.......-.+ ..| ++.++.. +..+.+.|.+||++
T Consensus 20 dcpf~qr~~-m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~---~~P-~l~~d~~-------~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLF-MTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGG---KPP-VLKFDEK-------WVTDSDKIEEFLEE 83 (221)
T ss_pred CChhHHHHH-HHHH---HcCC-CceEEEeecCCCcHHHHhhCCCC---CCC-eEEeCCc-------eeccHHHHHHHHHH
Confidence 489998763 2222 2222 47788899888777664432222 244 4444532 24667788888888
Q ss_pred HhcC
Q psy9102 210 VVAG 213 (277)
Q Consensus 210 ~~~~ 213 (277)
.+.+
T Consensus 84 ~l~~ 87 (221)
T KOG1422|consen 84 KLPP 87 (221)
T ss_pred hcCC
Confidence 7753
No 476
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=23.39 E-value=60 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.067 Sum_probs=17.4
Q ss_pred EEEECCCCHHHhhhhHHHHHHHh
Q psy9102 253 VEFYAPWCGHCKKLTPVYEEVGE 275 (277)
Q Consensus 253 V~f~apwC~~c~~~~p~~~~la~ 275 (277)
..|+.+.|+.|++..-.+++++-
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl 24 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL 24 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC
Confidence 46788899999888777766654
No 477
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=22.98 E-value=2.1e+02 Score=18.21 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHHhcC--CceEEEEEcccchHHHhhhcCCCCCCCCCcEEEEEcCCCCcccCCCCCCHHHHHHHHHH
Q psy9102 5 GTNYWRNRILKVAKGFA--DKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTK 80 (277)
Q Consensus 5 ~~~~~~~~f~~~A~~~~--~~~~f~~~~~~~~~~~~~~~~v~~~~~~~P~~~~~~~~~~~y~~~g~~~~~~i~~fi~~ 80 (277)
+.+.+++.+++...... +++....+.|-.. |. ..|++++.+ .+..| +..+.+++.+.++.
T Consensus 15 G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~---C~---------~~P~v~i~~-~~~~y---~~v~~~~~~~il~~ 76 (77)
T cd02980 15 GAEELLEALEKELGIRGGDGRVTVERVGCLGA---CG---------LAPVVVVYP-DGVWY---GRVTPEDVEEIVEE 76 (77)
T ss_pred CHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCc---cc---------CCCEEEEeC-CCeEE---ccCCHHHHHHHHHh
Confidence 45677777877776543 4677777787777 64 568888885 33555 45788888887764
No 478
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=22.79 E-value=1.5e+02 Score=23.84 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=27.8
Q ss_pred cchhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHH
Q psy9102 163 FQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 163 ~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi 207 (277)
++.+.+.|+|+. +|++++.-. .......|.++...-.+.+
T Consensus 151 DP~lF~~F~I~~----VPafVv~C~-~~yD~I~GNIsl~~ALe~i 190 (212)
T PRK13730 151 DPTLFSQYGIRS----VPALVVFCS-QGYDIIRGNLRVGQALEKV 190 (212)
T ss_pred CHHHHHhcCCcc----ccEEEEEcC-CCCCEEEecccHHHHHHHH
Confidence 577889999998 999988753 2234566877766444333
No 479
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.51 E-value=78 Score=24.79 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=26.4
Q ss_pred chhhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHH
Q psy9102 164 QHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFL 207 (277)
Q Consensus 164 ~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi 207 (277)
...+...|+.+ +|++++- | .+...|..+.+.+.+.|
T Consensus 165 ~~~a~~~gv~G----~Pt~vv~---g-~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISG----VPFFVFN---G-KYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCc----CCEEEEC---C-eEeecCCCCHHHHHHHh
Confidence 34556789988 9999883 2 35578888888887655
No 480
>COG3411 Ferredoxin [Energy production and conversion]
Probab=22.46 E-value=1.9e+02 Score=18.44 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCceeeecCCCCHHHHHHHHHHHhc
Q psy9102 179 KPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 179 ~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
=|+++.|+.+ -.| +..+++....+++.++.
T Consensus 17 gPvl~vYpeg-vWY---~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEG-VWY---TRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCC-eeE---eccCHHHHHHHHHHHHh
Confidence 6888888854 333 46899999999999886
No 481
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=21.71 E-value=85 Score=19.95 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=16.1
Q ss_pred EEEEECCCCHHHhhhhHHHHHHH
Q psy9102 252 LVEFYAPWCGHCKKLTPVYEEVG 274 (277)
Q Consensus 252 lV~f~apwC~~c~~~~p~~~~la 274 (277)
+..|+.+.|+.|++..=.+++.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~ 24 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKG 24 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcC
Confidence 34566777888988877666554
No 482
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=21.28 E-value=4.4e+02 Score=21.18 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=44.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHhhcCCcceEEEecccc--c----------------chhhhccCcccCCCCCCeEEE
Q psy9102 123 LVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDD--F----------------QHELNEFGFDYVPSDKPLVFV 184 (277)
Q Consensus 123 ~v~F~~~~c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~--~----------------~~~~~~~~i~~~~~~~P~i~~ 184 (277)
+=+|++..|..|-.. ...|.+|+.+ . .+..+...++- . ......+|... ...|.+++
T Consensus 2 VELFTSQGCsSCPpA-D~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~--vYTPQ~vV 76 (202)
T PF06764_consen 2 VELFTSQGCSSCPPA-DRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRS--VYTPQVVV 76 (202)
T ss_dssp EEEEE-TT-TT-HHH-HHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S-----SSEEEE
T ss_pred eeEecCCCCCCCcHH-HHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCC--CcCCeEEE
Confidence 447889999999988 5778889888 3 34444444431 1 22445555554 34788877
Q ss_pred EcCCCceeeecCCCCHHHHHHHHHHHhc
Q psy9102 185 RAEDGKKYAMKDEFSVENLESFLTKVVA 212 (277)
Q Consensus 185 ~~~~~~~~~~~g~~~~~~l~~fi~~~~~ 212 (277)
-. ... .. ..+...+..-|.....
T Consensus 77 nG---~~~-~~-g~~~~~~~~ai~~~~~ 99 (202)
T PF06764_consen 77 NG---REH-RV-GSDRAAVEAAIQAARA 99 (202)
T ss_dssp TT---TEE-EE-TT-HHHHHHHHHHHHH
T ss_pred CC---eee-ee-ccCHHHHHHHHHHhhc
Confidence 33 222 22 4777888888887765
No 483
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=21.08 E-value=3.4e+02 Score=19.86 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=29.4
Q ss_pred ceEEEecccccch----------hhhccCcccCCCCCCeEEEEcCCCceeeecCCCCHHHHHHHHHHHh
Q psy9102 153 FTFAISAKDDFQH----------ELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211 (277)
Q Consensus 153 i~~~~vd~~~~~~----------~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~g~~~~~~l~~fi~~~~ 211 (277)
+.+.+-+..+++. +++.-|... +|.+++ +|+.+....-.+.++|.+|+.--.
T Consensus 41 v~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~----LPitlV---dGeiv~~G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 41 VEVERYNLAQNPQAFVENPEVNQLLQTEGAEA----LPITLV---DGEIVKTGRYPTNEELAEWLGISF 102 (123)
T ss_dssp -EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-----SEEEE---TTEEEEESS---HHHHHHHHT--G
T ss_pred ceEEEEccccCHHHHHhCHHHHHHHHHcCccc----CCEEEE---CCEEEEecCCCCHHHHHHHhCCCc
Confidence 8888888876643 445567776 998877 344554444578899999986443
No 484
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=20.92 E-value=1.1e+02 Score=25.55 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=21.9
Q ss_pred hcCCCcEEEEEECCCCHHHhhh-hHHHHHHH
Q psy9102 245 TNNEKDVLVEFYAPWCGHCKKL-TPVYEEVG 274 (277)
Q Consensus 245 ~~~~~~~lV~f~apwC~~c~~~-~p~~~~la 274 (277)
...+|..++...+-||+.|-+. .+++..|+
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALs 85 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALS 85 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHH
Confidence 3557899999999999999543 45555544
No 485
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=1.7e+02 Score=23.52 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=31.1
Q ss_pred chhhhccCcccCCCCCCeEEEEcCCCceeeec-C--CCCHHHHHHHHHHHh
Q psy9102 164 QHELNEFGFDYVPSDKPLVFVRAEDGKKYAMK-D--EFSVENLESFLTKVV 211 (277)
Q Consensus 164 ~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~-g--~~~~~~l~~fi~~~~ 211 (277)
..+++.+|+.+ +||+++.. +++.+... | -.+.+.+..++...+
T Consensus 164 r~l~~rlg~~G----fPTl~le~-ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAG----FPTLALER-NGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCC----CCeeeeee-CCceEeccCCcccCCcHHHHHHHHHHH
Confidence 35778899998 99998888 45566543 4 356678888877654
No 486
>KOG0833|consensus
Probab=20.82 E-value=70 Score=24.88 Aligned_cols=17 Identities=18% Similarity=0.700 Sum_probs=13.2
Q ss_pred ECCCCHHHhhhhHHHHH
Q psy9102 256 YAPWCGHCKKLTPVYEE 272 (277)
Q Consensus 256 ~apwC~~c~~~~p~~~~ 272 (277)
+.+=||+|+|+.-.|..
T Consensus 101 f~tPCG~CRQfl~Ef~~ 117 (173)
T KOG0833|consen 101 FTTPCGVCRQFLREFGN 117 (173)
T ss_pred cCCCcHHHHHHHHHHhh
Confidence 45669999999877754
No 487
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=20.61 E-value=1.3e+02 Score=21.51 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCHHHhhhhHHHHHHHhhC
Q psy9102 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277 (277)
Q Consensus 248 ~~~~lV~f~apwC~~c~~~~p~~~~la~~~ 277 (277)
++.+||.-.|+.||.-. -...+++|.++|
T Consensus 21 Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky 49 (108)
T PF00255_consen 21 GKVLLIVNVASKCGYTK-QYKQLNELYEKY 49 (108)
T ss_dssp TSEEEEEEEESSSTTHH-HHHHHHHHHHHH
T ss_pred CCEEEEEecccccCCcc-ccHHHHHHHHHH
Confidence 57899999999999887 445777776553
No 488
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.32 E-value=1.5e+02 Score=21.29 Aligned_cols=53 Identities=11% Similarity=0.250 Sum_probs=34.8
Q ss_pred ChhhhhhhHHHHHHHHhhcCCcceEEEecccccch-hhhccCcccCCCCCCeEEEEcC
Q psy9102 131 CGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQH-ELNEFGFDYVPSDKPLVFVRAE 187 (277)
Q Consensus 131 c~~c~~~~~~~~~~la~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~~~~~P~i~~~~~ 187 (277)
|++|..+ .-+....-.++..+.+..|+...-.. +....|=.. ...|.+++-.+
T Consensus 24 Cp~c~~i--EGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~--QslPvLVL~~~ 77 (112)
T PF11287_consen 24 CPHCAAI--EGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEAN--QSLPVLVLADG 77 (112)
T ss_pred CCchHHH--HhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhc--cCCCEEEeCCC
Confidence 9999877 34444555666778899999765433 344445433 34999888653
No 489
>PRK12411 cytidine deaminase; Provisional
Probab=20.18 E-value=58 Score=24.15 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=10.5
Q ss_pred CCCHHHhhhhHHH
Q psy9102 258 PWCGHCKKLTPVY 270 (277)
Q Consensus 258 pwC~~c~~~~p~~ 270 (277)
+=||.|+|+.-.|
T Consensus 84 sPCG~CRQ~l~Ef 96 (132)
T PRK12411 84 PPCGACRQVMVEL 96 (132)
T ss_pred CCchhHHHHHHHh
Confidence 6799999986655
Done!