RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9102
(277 letters)
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 151 bits (382), Expect = 8e-44
Identities = 68/267 (25%), Positives = 112/267 (41%), Gaps = 30/267 (11%)
Query: 14 LKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVEN 73
L+ A+ D F I++ D + +V + D + + E + EN
Sbjct: 55 LQAAEAI-DDIPFGITSNSDVFSKYQ-------LDKDGVVLFKKFDEGRNNFEGEVTKEN 106
Query: 74 LESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGH 133
L F IK +P V + ++ K ++ F
Sbjct: 107 LLDF------------IKHNQLP-----LVIEFTEQTAPKIFGGEIKTHILLFLPKSVSD 149
Query: 134 CTNYWRNRILKVAKGFADKFTFAISAKD--DFQHELNEFGFDYVPSDKPLVFVRAEDGKK 191
+ + A+ F K F D D Q L FG + E+ K
Sbjct: 150 Y-DGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTK 208
Query: 192 YAMK-DEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNS-GPVKVAVAKNFDEVVTNNEK 249
Y + +E + E + F + + G++ P++ S+ +PED PVKV V KNF++V + +K
Sbjct: 209 YKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKK 268
Query: 250 DVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+V VEFYAPWCGHCK+L P+++++GE
Sbjct: 269 NVFVEFYAPWCGHCKQLAPIWDKLGET 295
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 123 bits (310), Expect = 1e-32
Identities = 95/271 (35%), Positives = 141/271 (52%), Gaps = 28/271 (10%)
Query: 14 LKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVEN 73
LK A D + FA + + +E ++ G + + + ED + + +
Sbjct: 148 LKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGK 207
Query: 74 LESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGH 133
++ F + E+ G N D + KD+L+ +Y
Sbjct: 208 IKKF-----------------IQENIFGICPHMTEDNKDLI---QGKDLLIAYYDVDYEK 247
Query: 134 C---TNYWRNRILKVAKGFADK---FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAE 187
+NYWRNR++ VAK F D FA++++ F HEL++FG + + P+V +R
Sbjct: 248 NAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTA 307
Query: 188 DGKKYAMKDEFSV--ENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVT 245
G+K+ M++EFS + LE FL G + Y+KSEP+PE N GPVKV VA+NFDE+V
Sbjct: 308 KGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVN 367
Query: 246 NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
N KDVL+EFYAPWCGHCK L P Y+E+GEK
Sbjct: 368 NENKDVLIEFYAPWCGHCKNLEPKYKELGEK 398
Score = 88.0 bits (217), Expect = 6e-20
Identities = 80/237 (33%), Positives = 124/237 (52%), Gaps = 21/237 (8%)
Query: 3 KTGTNYWRNRILKVAKGFADK---FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAED 59
G+NYWRNR++ VAK F D FA++++ F HEL++FG + + P+V +R
Sbjct: 249 AKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAK 308
Query: 60 GKKYAMKDEFSV--ENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTN 117
G+K+ M++EFS + LE FL G + Y+KSEP+PE N GPVKV VA+NFDE+V N
Sbjct: 309 GEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNN 368
Query: 118 NEKDVLVEFYAPWCGHCTN---YWRNRILKVAKGFADKFTFAISAKDDFQHEL-NEFGFD 173
KDVL+EFYAPWCGHC N ++ ++ + + I+ D +++ + +
Sbjct: 369 ENKDVLIEFYAPWCGHCKNLEPKYK----ELGEKLSKDPNIVIAKMDATANDVPSPYEVR 424
Query: 174 YVPSDKPLVFVRAEDGKKYAMKD---EFSVENLESFLTKVVAGEVDPYIKSEPVPED 227
P+ + F A KK K + + S+L + + +
Sbjct: 425 GFPT---IYFSPA--NKKLNPKKYEGGRELSDFISYLQREATNPPVIQEEKPKKKKK 476
Score = 59.9 bits (144), Expect = 2e-10
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 231 PVKVAVAKNFDEVVTNNEKD--VLVEFYAPWCGHCKKLTPVYEEVGEK 276
V NF+ +++ +LVEF+APWCGH K+L P YE +
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATR 49
Score = 52.6 bits (125), Expect = 4e-08
Identities = 27/166 (16%), Positives = 49/166 (29%), Gaps = 24/166 (14%)
Query: 102 PVKVAVAKNFDEVVTNNEKD--VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISA 159
V NF+ +++ +LVEF+APWCGH A A
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRL-APEYEAAATRLKGIVPLAKVD 60
Query: 160 KDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPYI 219
+ N++G P+ K +F E+ Y + + + S L K
Sbjct: 61 CTANTNTCNKYGVSGYPTLK--IFRDGEEAGAY--DGPRTADGIVSHLKKQAG------- 109
Query: 220 KSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKK 265
+ + +++ +V F+
Sbjct: 110 ----------PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHS 145
Score = 47.9 bits (113), Expect = 2e-06
Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 24/176 (13%)
Query: 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKD 161
+ + +++ +V F+ + + LK A D + FA + +
Sbjct: 111 ASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEF----LKAASNLRDNYRFAHTNVE 166
Query: 162 DFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPYIKS 221
+E ++ G + + + ED + + + ++ F
Sbjct: 167 SLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKF--------------- 211
Query: 222 EPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277
+ E+ G N D + KD+L+ +Y K + +
Sbjct: 212 --IQENIFGICPHMTEDNKDLI---QGKDLLIAYYDVDYEKNAKGSNYWRNRVMMV 262
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 119 bits (299), Expect = 1e-30
Identities = 36/264 (13%), Positives = 68/264 (25%), Gaps = 41/264 (15%)
Query: 15 KVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENL 74
K + + + N + P+ V + + S E +
Sbjct: 479 KASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPT---TVVF--NQSSIHEYEGHHSAEQI 533
Query: 75 ESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKD--VLVEFYAPWCG 132
F+ + + V F+E+V + D +V+FY+PW
Sbjct: 534 LEFIEDLR-----------------NPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSH 576
Query: 133 HCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKY 192
++A+ + + P + F + K Y
Sbjct: 577 PSQVL-MPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYPE---IRFYPQKSSKAY 632
Query: 193 AMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVL 252
D Y + F+E V + +
Sbjct: 633 QYHSYNG-------------WNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWV 679
Query: 253 VEFYAPWCGHCKKLTPVYEEVGEK 276
V+FYAPW G + P +E +
Sbjct: 680 VDFYAPWSGPSQNFAPEFELLARM 703
Score = 82.9 bits (204), Expect = 4e-18
Identities = 26/263 (9%), Positives = 56/263 (21%), Gaps = 43/263 (16%)
Query: 14 LKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVEN 73
L+++ D + F + +
Sbjct: 264 LRLSGMLDGLVNVGWVDCDAQDSLCKSLD---TTASTTAYFPPGATLNDREKSSVLFLNS 320
Query: 74 LESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGH 133
L++ E E + LV F+ + +
Sbjct: 321 LDA---------------KEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFH--FGKN 363
Query: 134 CTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYA 193
+ ++ L + + K+Y
Sbjct: 364 ENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQ----PSLAVFKGQGTKEYE 419
Query: 194 MKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLV 253
+ G+ Y E + V +NF ++++ LV
Sbjct: 420 IHH----------------GKKILYDILAFAKESVNSHVTTLGPQNFPA---SDKEPWLV 460
Query: 254 EFYAPWCGHCKKLTPVYEEVGEK 276
+F+APW + L P +
Sbjct: 461 DFFAPWSPPSRALLPELRKASTL 483
Score = 57.1 bits (137), Expect = 2e-09
Identities = 26/160 (16%), Positives = 43/160 (26%), Gaps = 29/160 (18%)
Query: 117 NNEKDVLVEFYAPWCGHCTN---YWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFD 173
N+ + V FY+P H + WR + AK D + G +
Sbjct: 131 NSGELWFVNFYSPGSSHSHDLAPTWR----EFAKEVDGLLRIGAVNCGDDRMLCRMKGVN 186
Query: 174 YVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVK 233
PS +F KY + S E+L +F + V
Sbjct: 187 SYPSLF--IFRSGMAAVKY--NGDRSKESLVAFAMQ----------HVRS-------TVT 225
Query: 234 VAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
NF + V + +C + +
Sbjct: 226 ELSTGNFVNAI-ETAFAAGVGWLITFCSKGEDCLTSQTRL 264
Score = 44.7 bits (105), Expect = 2e-05
Identities = 15/177 (8%), Positives = 34/177 (19%), Gaps = 22/177 (12%)
Query: 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYW-RNRILKVAKGFADKFTFAISAK 160
V NF + V + +C + L+++
Sbjct: 223 TVTELSTGNFVNAI-ETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDC 281
Query: 161 DDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPYIK 220
D + F + +L++
Sbjct: 282 DAQDSLCKSLD---TTASTTAYFPPGATLNDREKSSVLFLNSLDA--------------- 323
Query: 221 SEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277
E E + LV F+ + + P +++
Sbjct: 324 KEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFH--FGKNENANDPELKKLKTLL 378
Score = 44.7 bits (105), Expect = 2e-05
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 246 NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
N+ + V FY+P H L P + E ++
Sbjct: 131 NSGELWFVNFYSPGSSHSHDLAPTWREFAKE 161
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 111 bits (278), Expect = 1e-29
Identities = 57/192 (29%), Positives = 81/192 (42%), Gaps = 21/192 (10%)
Query: 88 PYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAK 147
P + + V V NFD V + VL+EFYAPWCGHC + K+A
Sbjct: 2 PLGSEDDLEVKEENGVLVLNDANFDNFVADK-DTVLLEFYAPWCGHCKQF-APEYEKIAN 59
Query: 148 GFADKFTFAISAK---DDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLE 204
DK AK + F P+ + ++ G+ + + E +
Sbjct: 60 ILKDKDPPIPVAKIDATSASVLASRFDVSGYPT---IKILK--KGQAVDYEGSRTQEEIV 114
Query: 205 SFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCK 264
+ + +V P V +NFDEVV N+ +LVEFYAPWCGHCK
Sbjct: 115 AKVREVSQ----------PDWTPPPEVTLVLTKENFDEVV-NDADIILVEFYAPWCGHCK 163
Query: 265 KLTPVYEEVGEK 276
KL P YE+ ++
Sbjct: 164 KLAPEYEKAAKE 175
Score = 54.5 bits (131), Expect = 6e-09
Identities = 37/155 (23%), Positives = 56/155 (36%), Gaps = 20/155 (12%)
Query: 58 EDGKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTN 117
+ G+ + + E + + + +V P V +NFDEVV N
Sbjct: 97 KKGQAVDYEGSRTQEEIVAKVREVSQ----------PDWTPPPEVTLVLTKENFDEVV-N 145
Query: 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHE---LNEFGFDY 174
+ +LVEFYAPWCGHC K AK + + AK D E F
Sbjct: 146 DADIILVEFYAPWCGHCKKL-APEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSG 204
Query: 175 VPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTK 209
P+ L R G+ Y + ++ +
Sbjct: 205 YPT---LKIFR--KGRPYDYNGPREKYGIVDYMIE 234
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 113 bits (282), Expect = 1e-28
Identities = 50/263 (19%), Positives = 89/263 (33%), Gaps = 27/263 (10%)
Query: 25 TFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAG 84
TF A F + K +++ + + + + K +
Sbjct: 158 TFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQV 217
Query: 85 EVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILK 144
E PY F + V + L + ++ +
Sbjct: 218 EALPY-------------FGEIDGSVFAQYVES--GLPLGYLFYNDEEEL-EEYKPLFTE 261
Query: 145 VAKGFADKFTFAISAKDDFQHELNEFG---------FDYVPSDKPLVFVRAEDGKKYAMK 195
+AK F F + D + + +
Sbjct: 262 LAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELS 321
Query: 196 DEFSV--ENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLV 253
D+ + + +ES + + G+ P +KS+ + E+ V V KN DE+V + +KDVLV
Sbjct: 322 DKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLV 381
Query: 254 EFYAPWCGHCKKLTPVYEEVGEK 276
+YAPWCGHCK+L P Y+E+ +
Sbjct: 382 LYYAPWCGHCKRLAPTYQELADT 404
Score = 94.5 bits (234), Expect = 4e-22
Identities = 46/237 (19%), Positives = 94/237 (39%), Gaps = 21/237 (8%)
Query: 6 TNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFG---------FDYVPSDKPLVFVR 56
++ ++AK F F + D +
Sbjct: 252 LEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQ 311
Query: 57 AEDGKKYAMKDEFSV--ENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEV 114
+ + D+ + + +ES + + G+ P +KS+ + E+ V V KN DE+
Sbjct: 312 LSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEI 371
Query: 115 VTNNEKDVLVEFYAPWCGHCTN---YWRNRILKVAKGFADKFTFAISAK-DDFQHELNEF 170
V + +KDVLV +YAPWCGHC ++ ++A +A+ + + AK D ++++
Sbjct: 372 VNDPKKDVLVLYYAPWCGHCKRLAPTYQ----ELADTYANATSDVLIAKLDHTENDVRGV 427
Query: 171 GFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPED 227
+ P+ ++ + + + S+++L F+ + +VD E E
Sbjct: 428 VIEGYPTIV--LYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQEK 482
Score = 75.3 bits (184), Expect = 1e-15
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 217 PYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+++ E V ++S V +F+E + ++ VL EF+APWCGHCK + P Y + E
Sbjct: 2 GHMQQEAVAPEDS-AVVKLATDSFNEYIQSH-DLVLAEFFAPWCGHCKNMAPEYVKAAET 59
Score = 69.9 bits (170), Expect = 8e-14
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 16/185 (8%)
Query: 88 PYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAK 147
+++ E V ++S V +F+E + ++ VL EF+APWCGHC N +K A+
Sbjct: 2 GHMQQEAVAPEDS-AVVKLATDSFNEYIQSH-DLVLAEFFAPWCGHCKN-MAPEYVKAAE 58
Query: 148 GFADK-FTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESF 206
+K T A + Q E PS K +F ++ + + E + F
Sbjct: 59 TLVEKNITLAQIDCTENQDLCMEHNIPGFPSLK--IFKNSDVNNSIDYEGPRTAEAIVQF 116
Query: 207 LTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKL 266
+ K V + + F V + +F A + K
Sbjct: 117 MIKQSQPAVAVVADLPAYLAN----------ETFVTPVIVQSGKIDADFNATFYSMANKH 166
Query: 267 TPVYE 271
Y+
Sbjct: 167 FNDYD 171
Score = 32.9 bits (74), Expect = 0.098
Identities = 19/186 (10%), Positives = 48/186 (25%), Gaps = 40/186 (21%)
Query: 91 KSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFA 150
+S+P + + F V + +F A + +A
Sbjct: 120 QSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFY------------SMANKHF 167
Query: 151 DKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKV 210
+ + F + + K +++ + + + + K
Sbjct: 168 NDYDFVSA-------------ENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKW 214
Query: 211 VAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVY 270
+ E PY F + V + L + ++ P++
Sbjct: 215 LQVEALPY-------------FGEIDGSVFAQYVES--GLPLGYLFYNDEEELEEYKPLF 259
Query: 271 EEVGEK 276
E+ +K
Sbjct: 260 TELAKK 265
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
sapiens}
Length = 252
Score = 102 bits (256), Expect = 2e-26
Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 22/225 (9%)
Query: 14 LKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVEN 73
LK A D + FA + + +E ++ G + + + ED + + +
Sbjct: 44 LKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGK 103
Query: 74 LESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGH 133
++ F+ + + G P++ + + +A E
Sbjct: 104 IKKFIQENIFGIC-PHMTEDNKDLIQGKDLLIAYYDVDYEK----------------NAK 146
Query: 134 CTNYWRNRILKVAKGFAD---KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK 190
+NYWRNR++ VAK F D K FA++++ F HEL++FG + + P+V +R G+
Sbjct: 147 GSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGE 206
Query: 191 KYAMKDEFSV--ENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVK 233
K+ M++EFS + LE FL G + Y+KSEP+PE N G
Sbjct: 207 KFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGAAA 251
Score = 88.2 bits (218), Expect = 6e-21
Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 5 GTNYWRNRILKVAKGFAD---KFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK 61
G+NYWRNR++ VAK F D K FA++++ F HEL++FG + + P+V +R G+
Sbjct: 147 GSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGE 206
Query: 62 KYAMKDEFSV--ENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVK 104
K+ M++EFS + LE FL G + Y+KSEP+PE N G
Sbjct: 207 KFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGAAA 251
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 97.8 bits (244), Expect = 7e-26
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 220 KSEPVPEDNSGPVKVA--VAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ V D P +V + FD +V + EKDV V +Y PW H +++++
Sbjct: 3 MASNVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMS 61
Score = 79.7 bits (197), Expect = 6e-19
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 91 KSEPVPEDNSGPVKVA--VAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ V D P +V + FD +V + EKDV V +Y PW H
Sbjct: 3 MASNVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHS 48
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 94.8 bits (236), Expect = 8e-25
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 225 PEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
P + GPV V VAKN++E+V ++ KDVL+EFYAPWCGHCK L P YEE+G
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGAL 53
Score = 77.4 bits (191), Expect = 4e-18
Identities = 25/41 (60%), Positives = 32/41 (78%)
Query: 96 PEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
P + GPV V VAKN++E+V ++ KDVL+EFYAPWCGHC
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKA 42
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 94.0 bits (234), Expect = 3e-24
Identities = 31/50 (62%), Positives = 40/50 (80%)
Query: 227 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+SGPVKV V K FD +V + +KDVL+EFYAPWCGHCK+L P+Y +G+K
Sbjct: 4 GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKK 53
Score = 76.3 bits (188), Expect = 1e-17
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 98 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNY---WRNRILKVAKGFADKFT 154
+SGPVKV V K FD +V + +KDVL+EFYAPWCGHC + + K + +
Sbjct: 4 GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYT----SLGKKYKGQKD 59
Query: 155 FAISAKDDFQHE 166
I+ D ++
Sbjct: 60 LVIAKMDATAND 71
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 94.7 bits (235), Expect = 1e-22
Identities = 30/246 (12%), Positives = 71/246 (28%), Gaps = 38/246 (15%)
Query: 14 LKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAM--KDEFSV 71
+VA D F + D + S +++ + +
Sbjct: 155 ERVANILHDDCAFLSAFGDVSKP--------ERYSGDNIIYKPPGHSAPDMVYLGAMTNF 206
Query: 72 ENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWC 131
+ +++ V +N +E+ T L+ F+
Sbjct: 207 DVTYNWIQDKCVPLVREI-----------------TFENGEEL-TEEGLPFLILFHMKED 248
Query: 132 GHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKK 191
++N + + F + D F+H L P+D P++ + +
Sbjct: 249 TESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKT--PADCPVIAIDSFRHMY 306
Query: 192 Y--AMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEK 249
KD L+ F+ + +G++ P P D + + +V ++ +
Sbjct: 307 VFGDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTA------PGEQAQDVASSPPE 360
Query: 250 DVLVEF 255
+
Sbjct: 361 SSFQKL 366
Score = 84.3 bits (208), Expect = 8e-19
Identities = 18/124 (14%), Positives = 42/124 (33%), Gaps = 10/124 (8%)
Query: 5 GTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKY- 63
++N + + F + D F+H L P+D P++ + +
Sbjct: 251 SLEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKT--PADCPVIAIDSFRHMYVF 308
Query: 64 -AMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDV 122
KD L+ F+ + +G++ P P D + + +V ++ +
Sbjct: 309 GDFKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTA------PGEQAQDVASSPPESS 362
Query: 123 LVEF 126
+
Sbjct: 363 FQKL 366
Score = 60.8 bits (147), Expect = 8e-11
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 227 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ +N DE++ N + LV FYA WC + L P++EE +
Sbjct: 2 PLGSEITSLDTENIDEILNNAD-VALVNFYADWCRFSQMLHPIFEEASDV 50
Score = 46.5 bits (110), Expect = 4e-06
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 98 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ +N DE++ N + LV FYA WC
Sbjct: 2 PLGSEITSLDTENIDEILNNAD-VALVNFYADWCRFS 37
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 91.7 bits (227), Expect = 3e-22
Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 19/222 (8%)
Query: 14 LKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGK-KYAMKDEFSVE 72
A + + F + + L V + E ++
Sbjct: 45 QDAANTLREDYKFHHTFSTEIAKFLKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEAS 104
Query: 73 NLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCG 132
++ ++ K V S + P+ V
Sbjct: 105 AIKDYVVKHALPLVGHRKTSNDAKRYSKRPLVVVYYSVDFSFDYRTA------------- 151
Query: 133 HCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKY 192
T +WRN++L+VAK F ++TFAI+ ++D+ E+ + G D + E GKK+
Sbjct: 152 --TQFWRNKVLEVAKDF-PEYTFAIADEEDYATEVKDLGLSESGGD-VNAAILDESGKKF 207
Query: 193 AMKD-EFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVK 233
AM+ EF + L F+ G++ P IKS+PVP++N G
Sbjct: 208 AMEPEEFDSDALREFVMAFKKGKLKPVIKSQPVPKNNKGAAA 249
Score = 80.6 bits (198), Expect = 4e-18
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 3 KTGTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKK 62
+T T +WRN++L+VAK F ++TFAI+ ++D+ E+ + G D + E GKK
Sbjct: 149 RTATQFWRNKVLEVAKDF-PEYTFAIADEEDYATEVKDLGLSESGGD-VNAAILDESGKK 206
Query: 63 YAMKD-EFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVK 104
+AM+ EF + L F+ G++ P IKS+PVP++N G
Sbjct: 207 FAMEPEEFDSDALREFVMAFKKGKLKPVIKSQPVPKNNKGAAA 249
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Length = 133
Score = 88.4 bits (219), Expect = 4e-22
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELN 168
+ + + + + F +++ +A+ F F
Sbjct: 14 ETYSDY-MSAGIPLAYIFAET--AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAG 70
Query: 169 EFGFDYVPSDKP-LVFVRAEDGKKYAM--KDEFSVENLESFLTKVVAGEVDPYIKSEPVP 225
P +K+ + E + E +++F+ VAG+++P IKSEP+P
Sbjct: 71 NLNLK--TDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIP 128
Query: 226 EDNSG 230
E G
Sbjct: 129 EKQEG 133
Score = 88.4 bits (219), Expect = 4e-22
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 5 GTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKP-LVFVRAEDGKKY 63
+++ +A+ F F P +K+
Sbjct: 36 ERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLK--TDKFPAFAIQEVAKNQKF 93
Query: 64 AM--KDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSG 101
+ E + E +++F+ VAG+++P IKSEP+PE G
Sbjct: 94 PFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEG 133
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 86.2 bits (213), Expect = 3e-20
Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 18/185 (9%)
Query: 98 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNY---WRNRILKVAKGFADKFT 154
S P+ + A V + VEF+A WCGHC + W +A+
Sbjct: 9 SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTW----XALAEDVKAWRP 64
Query: 155 FAISAKDDFQHELN-----EFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTK 209
A D E N +F P+ + V+ L L
Sbjct: 65 ALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLID 124
Query: 210 VVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPV 269
+ D + + P E + + NNE+ + + F +++
Sbjct: 125 ALESHHDTWPPACPPLEP------AXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALD 178
Query: 270 YEEVG 274
+
Sbjct: 179 LSQHK 183
Score = 73.1 bits (179), Expect = 2e-15
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 227 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
S P+ + A V + VEF+A WCGHC P + + E
Sbjct: 9 SPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAED 58
Score = 36.5 bits (84), Expect = 0.005
Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 22/155 (14%)
Query: 58 EDGKKYAMKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTN 117
V+ L L + D + + P E + + N
Sbjct: 102 NGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEP------AXLEEIDGFFARN 155
Query: 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL-NEFGFDYVP 176
NE+ + + F +VA + A+ + + + +FG P
Sbjct: 156 NEEYLALIFEXGGSYLAR--------EVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFP 207
Query: 177 SDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211
S + R + + E SF T +
Sbjct: 208 SCY--LLFRNGSVSRVPVLME-----SRSFYTAYL 235
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 82.8 bits (205), Expect = 4e-20
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 219 IKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ + V V NFD V ++ VL+EFYAPWCGHCK+ P YE++
Sbjct: 6 SGDDDLEVKEENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIAST 62
Score = 67.0 bits (164), Expect = 4e-14
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 90 IKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
+ + V V NFD V ++ VL+EFYAPWCGHC
Sbjct: 6 SGDDDLEVKEENGVWVLNDGNFDNFV-ADKDTVLLEFYAPWCGHCKQ 51
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 80.1 bits (198), Expect = 4e-19
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 227 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+SG V +FD+ V ++E +VEFYAPWCGHCK L P + +
Sbjct: 4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASE 53
Score = 64.3 bits (157), Expect = 3e-13
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 98 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
+SG V +FD+ V ++E +VEFYAPWCGHC N
Sbjct: 4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKN 42
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 78.9 bits (195), Expect = 1e-18
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 225 PEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+SG V+V +N+ E++ E D ++EFYAPWC C+ L P +E E
Sbjct: 2 SSGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEW 50
Score = 62.3 bits (152), Expect = 2e-12
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 96 PEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
+SG V+V +N+ E++ E D ++EFYAPWC C N
Sbjct: 2 SSGSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQN 39
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 78.6 bits (194), Expect = 2e-18
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 227 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+S V NF+ V ++ LVEFYAPWCGHC++LTP +++
Sbjct: 14 SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATA 63
Score = 62.4 bits (152), Expect = 1e-12
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 98 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+S V NF+ V ++ LVEFYAPWCGHC
Sbjct: 14 SSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHC 50
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 75.0 bits (185), Expect = 2e-17
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 224 VPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
PE+ V V NF E + K +LVEFYAPWCGHCK L P Y + K
Sbjct: 2 APEEEDH-VLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHCKALAPEYAKAAGK 52
Score = 58.8 bits (143), Expect = 2e-11
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 95 VPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
PE+ V V NF E + K +LVEFYAPWCGHC
Sbjct: 2 APEEEDH-VLVLRKSNFAEAL-AAHKYLLVEFYAPWCGHC 39
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 73.1 bits (180), Expect = 1e-16
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
V NFD+ + E ++FYAPWCGHCK L P +EE+ +K
Sbjct: 4 GSTVLALTENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKK 49
Score = 56.1 bits (136), Expect = 2e-10
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
V NFD+ + E ++FYAPWCGHC
Sbjct: 4 GSTVLALTENNFDDTIA--EGITFIKFYAPWCGHCKT 38
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 78.5 bits (192), Expect = 1e-16
Identities = 34/189 (17%), Positives = 58/189 (30%), Gaps = 16/189 (8%)
Query: 92 SEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNY---WRNRILKVAKG 148
V +S P+ + A + V + VEF+A WCGH + W+ ++A
Sbjct: 3 HMSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWK----ELAND 58
Query: 149 FADKFTFAISAKDDFQHELN-----EFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENL 203
D A D E N EF P+ + F +A K +
Sbjct: 59 VKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT---VRFFQA-FTKNGSGATLPGAGAN 114
Query: 204 ESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 263
L + ++ + + P P K+ F + ++ E + G
Sbjct: 115 VQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGRE 174
Query: 264 KKLTPVYEE 272
L
Sbjct: 175 VTLDLSQYH 183
Score = 76.9 bits (188), Expect = 4e-16
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 221 SEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
V +S P+ + A + V + VEF+A WCGH P ++E+
Sbjct: 3 HMSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELAND 58
Score = 39.6 bits (91), Expect = 7e-04
Identities = 36/248 (14%), Positives = 64/248 (25%), Gaps = 22/248 (8%)
Query: 15 KVAKGFADKFTFAISAKDDFQHELN-----EFGFDYVPSDKPLVFVRAEDGKKYAMKDEF 69
++A D A D E N EF P+ + F +A K +
Sbjct: 54 ELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT---VRFFQA-FTKNGSGATLP 109
Query: 70 SVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAP 129
L + ++ + + P P K+ F + ++ E
Sbjct: 110 GAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDS 169
Query: 130 WCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDG 189
+ G ++ VA + +N+FG PS +
Sbjct: 170 YLGREVTLDLSQYHAVAVRRVL---------NTESDLVNKFGVTDFPS---CYLLLRNGS 217
Query: 190 KKYAMKDEFSVENLESFLTKVVAGEVDPY-IKSEPVPEDNSGPVKVAVAKNFDEVVTNNE 248
S S+L + D + PV D P A + + E
Sbjct: 218 VSRVPVLVESRSFYTSYLRGLPGLTRDAPPTTATPVTADKIAPTVWKFADRSKIYMADLE 277
Query: 249 KDVLVEFY 256
+
Sbjct: 278 SALHYILR 285
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 70.5 bits (173), Expect = 2e-15
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+ F+E V + +V+FYAPWCG C+ P +E +
Sbjct: 2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLAR 48
Score = 55.4 bits (134), Expect = 4e-10
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ F+E V + +V+FYAPWCG C
Sbjct: 2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPC 36
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone,
endoplasmic reticulum, isomeras membrane, redox-active
center; 2.20A {Homo sapiens}
Length = 147
Score = 70.1 bits (171), Expect = 3e-15
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 6 TNYWRNRILKVAKGFADKFTFAISAKDDFQHE--LNEFGFDYVPSDKPLVFVRAEDGKKY 63
+ + A+ F K FA D ++ L FG + E+ KY
Sbjct: 47 YDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKY 106
Query: 64 AM-KDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDN 99
+E + E + F + + G++ P++ S+ +PED
Sbjct: 107 KPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDW 143
Score = 70.1 bits (171), Expect = 3e-15
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 135 TNYWRNRILKVAKGFADKFTFAISAKDDFQHE--LNEFGFDYVPSDKPLVFVRAEDGKKY 192
+ + A+ F K FA D ++ L FG + E+ KY
Sbjct: 47 YDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKY 106
Query: 193 AM-KDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDN 228
+E + E + F + + G++ P++ S+ +PED
Sbjct: 107 KPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDW 143
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 72.5 bits (177), Expect = 5e-15
Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 29/205 (14%)
Query: 98 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN---YWRNRILKVAKGFADKFT 154
D+ + K+FD+ + N LVEFYAPWCGHC +R K AK
Sbjct: 14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFR----KAAKRLDGVVQ 69
Query: 155 FAISAKDDFQHEL--NEFG---------FDYVPSDKPLVFVRAEDGKKYAMKDEF----S 199
A D +++ ++ F D A+ + + +
Sbjct: 70 VAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGART 129
Query: 200 VENLESFLTKVVAGEVDPYIKSEPVPE--DNSGPVKVAVAKNFDEVVTN-----NEKDVL 252
+ + F + V +++ + + S + V + D++ +
Sbjct: 130 LAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGK 189
Query: 253 VEFYAPWCGHCKKLTPVYEEVGEKA 277
+FY+ K+LT + +
Sbjct: 190 FDFYSISNKKLKQLTDMNPTYEKTP 214
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 72.7 bits (178), Expect = 7e-15
Identities = 34/225 (15%), Positives = 66/225 (29%), Gaps = 32/225 (14%)
Query: 14 LKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVEN 73
+ A+ F F + +L + ++ + + S E
Sbjct: 164 KEAAEEFHPYIPFFATFDSKVAKKLT------LKLNEIDFYEAFMEEPVTIPDKPNSEEE 217
Query: 74 LESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGH 133
+ +F+ + + +K E + E + +V F
Sbjct: 218 IVNFVEEHRRSTL-RKLKPESMYETWEDDMD---------------GIHIVAFAEEADPD 261
Query: 134 CTNYWRNRILKVAKGFADK--FTFAISAKDDFQHELNEF----GFDYVPSDKPLVFVRAE 187
+ + VA+ D + DDF + + D +V V
Sbjct: 262 GYEF-LEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDA 320
Query: 188 DGKKYAMKDE---FSVENLESFLTKVVAGEVDPYIKSEPVPEDNS 229
D M DE S E LE +L V+ GE++ + +D+
Sbjct: 321 DSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTEDDDDEDDDDDD 365
Score = 59.2 bits (143), Expect = 2e-10
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 7 NYWRNRILKVAKGFADK--FTFAISAKDDFQHELNEF----GFDYVPSDKPLVFVRAEDG 60
+ + VA+ D + DDF + + D +V V D
Sbjct: 263 YEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADS 322
Query: 61 KKYAMKDE---FSVENLESFLTKVVAGEVDPYIKSEPVPEDNS 100
M DE S E LE +L V+ GE++ + +D+
Sbjct: 323 VWMEMDDEEDLPSAEELEDWLEDVLEGEINTEDDDDEDDDDDD 365
Score = 48.5 bits (115), Expect = 1e-06
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 220 KSEPVPE-DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCK------KLTPVYEE 272
+ PE D V AKN+ V E + + ++ P + E
Sbjct: 2 EGLDFPEYDGVDRVINVNAKNYKNVFKKYEV-LALLYHEPPEDDKASQRQFEMEELILEL 60
Query: 273 VGE 275
+
Sbjct: 61 AAQ 63
Score = 46.5 bits (110), Expect = 4e-06
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 91 KSEPVPE-DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILK 144
+ PE D V AKN+ V E + + ++ P + + + +
Sbjct: 2 EGLDFPEYDGVDRVINVNAKNYKNVFKKYEV-LALLYHEPPEDDKASQRQFEMEE 55
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 68.5 bits (166), Expect = 3e-13
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 211 VAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKD-VLVEFYAPWCGHCKKLTPV 269
++ P V +F V +V FY CG C++
Sbjct: 4 MSVAQVATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYAST 63
Query: 270 YEEVGEK 276
+ +
Sbjct: 64 FSKFAGG 70
Score = 56.6 bits (135), Expect = 2e-09
Identities = 27/198 (13%), Positives = 57/198 (28%), Gaps = 21/198 (10%)
Query: 82 VAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKD-VLVEFYAPWCGHCTNY--- 137
++ P V +F V +V FY CG C Y
Sbjct: 4 MSVAQVATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYAST 63
Query: 138 WRN--RILKVAKGFADKFTFAISAKD-DFQHEL-NEFGFDYVPSDKPLVFVRAEDGKKYA 193
+ LKV G +A + + +L ++ ++VP F + +
Sbjct: 64 FSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLF--FFYPRDSCRSNE 121
Query: 194 MKDEFSVENLESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLV 253
S+E++ + + E++ ++ D+ + D+
Sbjct: 122 ECGTSSLEHVAFENSHLEVDELESEVRRLV-----------NKHMVVDDSLKERCIDMHF 170
Query: 254 EFYAPWCGHCKKLTPVYE 271
+ Y K+ +
Sbjct: 171 KLYTSKEELVKRSVSSTD 188
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 61.9 bits (150), Expect = 2e-11
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
F +V+ K VLV+F + K+ ++ + E
Sbjct: 12 TVTFYKVI-PKSKFVLVKFDTQYPYGEKQ--DEFKRLAEN 48
Score = 52.3 bits (125), Expect = 3e-08
Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCGHC---------TNYWRNRILKVAKGFADKFTFAIS 158
F +V+ K VLV+F + N + L VA+ + ++
Sbjct: 12 TVTFYKVI-PKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLN 70
Query: 159 AKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAM-KDEFSVENLESFLTKVVAGEVDP 217
+ +++L++ + P R D + V ++ +L +
Sbjct: 71 MELSEKYKLDKESY---PV---FYLFRDGDFENPVPYTGAVKVGAIQRWLKG----QGVY 120
Query: 218 YIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+P ++ + A + + + KK Y ++ K
Sbjct: 121 LGMPGCLPVYDALAGEFIRASGVEARQA--LLKQGQDNLSSVKETQKKWAEQYLKIMGK 177
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 58.9 bits (143), Expect = 2e-11
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 221 SEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
S S + +F + V N+E V+V+F+A WCG CK L P E++ K
Sbjct: 4 SHHHHHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAK 59
Score = 47.3 bits (113), Expect = 3e-07
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 92 SEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
S S + +F + V N+E V+V+F+A WCG C
Sbjct: 4 SHHHHHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPC 46
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 58.3 bits (141), Expect = 5e-11
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 218 YIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
E + G + + F +++ + D ++ Y+ C HC + P + +
Sbjct: 4 SYVKEGLAVLEDGRLIYITPEEFRQLL---QGDAILAVYSKTCPHCHRDWPQLIQASK 58
Score = 45.2 bits (107), Expect = 2e-06
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 89 YIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
E + G + + F +++ + D ++ Y+ C HC
Sbjct: 4 SYVKEGLAVLEDGRLIYITPEEFRQLL---QGDAILAVYSKTCPHC 46
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 58.3 bits (141), Expect = 8e-11
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+G V ++ +LV+F+APWCG C+++ P ++
Sbjct: 46 TGKVAGIDP-AILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAA 91
Score = 47.1 bits (112), Expect = 7e-07
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRIL-----KVAKGFADKFT 154
+G V ++ +LV+F+APWCG C R + A A +
Sbjct: 46 TGKVAGIDP-AILARAERDDLPLLVDFWAPWCGPC------RQMAPQFQAAAATLAGQVR 98
Query: 155 FA 156
A
Sbjct: 99 LA 100
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 59.3 bits (143), Expect = 2e-10
Identities = 27/212 (12%), Positives = 65/212 (30%), Gaps = 32/212 (15%)
Query: 14 LKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVEN 73
+ A+ F F + +L+ + ++ + D ++ E
Sbjct: 162 EEAAEHFQPYIKFFATFDKGVAKKLS------LKMNEVDFYEPFMDEPIAIPDKPYTEEE 215
Query: 74 LESFLTKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGH 133
L F+ + + ++ E + E + +V F
Sbjct: 216 LVEFVKEHQRPTL-RRLRPEDMFETWEDDLN---------------GIHIVAFAERSDPD 259
Query: 134 CTNYWRNRILKVAKGFADK--FTFAISAKDDFQHELNEFGFDYVPSDK----PLVFVRAE 187
+ + +VA+ D + DDF + + + +V V
Sbjct: 260 GYEF-LEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDA 318
Query: 188 DGKKYAMKDE---FSVENLESFLTKVVAGEVD 216
D + D+ + E LE ++ V++G+++
Sbjct: 319 DSVWMEIPDDDDLPTAEELEDWIEDVLSGKIN 350
Score = 58.5 bits (141), Expect = 4e-10
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 226 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
D V KNF +V+ + DVL +Y K ++
Sbjct: 7 YDGKDRVVSLTEKNFKQVL--KKYDVLCLYYHESVSSDKVAQKQFQLKEIV 55
Score = 51.6 bits (123), Expect = 7e-08
Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 33/187 (17%)
Query: 97 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN-----YWRNRILKVAKGFAD 151
D V KNF +V+ + DVL +Y + +L++ +
Sbjct: 7 YDGKDRVVSLTEKNFKQVL--KKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLE 64
Query: 152 KFTFAISAKD-DFQHEL-NEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTK 209
D + +L + GFD S L + + EF+ + L FL
Sbjct: 65 HKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVL-----KGDRTIEFDGEFAADVLVEFLLD 119
Query: 210 VVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPV 269
++ V + ++ L+ F+ +
Sbjct: 120 LIEDPV----------------EIINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKA 160
Query: 270 YEEVGEK 276
+EE E
Sbjct: 161 FEEAAEH 167
Score = 44.7 bits (105), Expect = 2e-05
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 7 NYWRNRILKVAKGFADK--FTFAISAKDDFQHELNEFGFDYVPSDK----PLVFVRAEDG 60
+ + +VA+ D + DDF + + + +V V D
Sbjct: 261 YEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADS 320
Query: 61 KKYAMKDE---FSVENLESFLTKVVAGEVD 87
+ D+ + E LE ++ V++G+++
Sbjct: 321 VWMEIPDDDDLPTAEELEDWIEDVLSGKIN 350
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 56.7 bits (137), Expect = 3e-10
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
G V A A+ D+++ ++ ++++F+APWCG C+ P++ E
Sbjct: 37 DGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAA 82
Score = 45.9 bits (109), Expect = 2e-06
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRIL-----KVAKGFADKFT 154
G V A A+ D+++ ++ ++++F+APWCG C R + A A K
Sbjct: 37 DGEVINATAETLDKLL-QDDLPMVIDFWAPWCGPC------RSFAPIFAETAAERAGKVR 89
Query: 155 FA 156
F
Sbjct: 90 FV 91
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 55.4 bits (134), Expect = 3e-10
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277
++ + D +V F+ C HCK + V ++ G +A
Sbjct: 4 IRDITTEAGMAHFEGL-SDAIVFFHKNLCPHCKNMEKVLDKFGARA 48
Score = 40.4 bits (95), Expect = 6e-05
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
++ + D +V F+ C HC
Sbjct: 4 IRDITTEAGMAHFEGL-SDAIVFFHKNLCPHC 34
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 55.6 bits (134), Expect = 4e-10
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKD-VLVEFYAPWCGHCKKLTPVYEEVGEK 276
SG +K K DE + +++ +VEF+A W C+ P+Y ++ K
Sbjct: 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLK 54
Score = 43.3 bits (102), Expect = 1e-05
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKD-VLVEFYAPWCGHCTN 136
SG +K K DE + +++ +VEF+A W C +
Sbjct: 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQS 43
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 54.2 bits (131), Expect = 8e-10
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
F++++ + K LV F C C+K+TPV EE+
Sbjct: 13 TFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRL 49
Score = 41.9 bits (99), Expect = 2e-05
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
F++++ + K LV F C C
Sbjct: 13 TFEQLIYDEGKACLVMFSRKNCHVC 37
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 53.9 bits (130), Expect = 1e-09
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+G +K +F++ V N+K VLV+F+A WCG C+++ P E +
Sbjct: 4 AGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAA 50
Score = 43.5 bits (103), Expect = 6e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+G +K +F++ V N+K VLV+F+A WCG C
Sbjct: 4 AGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPC 38
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 54.7 bits (132), Expect = 1e-09
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+ + V +++K V+V FY+P C +CK + P +EE +
Sbjct: 15 TWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAK 51
Score = 45.1 bits (107), Expect = 2e-06
Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRIL-----KVAKGFADKFTFAISAKDDFQ 164
+ + V +++K V+V FY+P C +C + + + AK + F
Sbjct: 15 TWSQQVEDSKKPVVVMFYSPACPYC------KAMEPYFEEYAKEYGSSAVFGRINIATNP 68
Query: 165 HELNEFGFDYVPSDKPLVFVRAEDGKKYAMK-DEFSVENLESFLTKVVAGEVDPYIKSEP 223
++G P+ F G+ + + L++ + ++ + KS P
Sbjct: 69 WTAEKYGVQGTPT--FKFF---CHGRPVWEQVGQIYPSILKNAVRDMLQHGEECIRKSTP 123
Query: 224 VPEDNSGPVK 233
V +D +G V+
Sbjct: 124 VGQDITGYVE 133
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 53.9 bits (130), Expect = 1e-09
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 216 DPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+ +S + +FD V + +LV+F+A WCG K + P+ +E+ +
Sbjct: 8 HHHSSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIAD 67
Score = 43.2 bits (102), Expect = 9e-06
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 87 DPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ +S + +FD V + +LV+F+A WCG
Sbjct: 8 HHHSSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPA 55
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 53.1 bits (128), Expect = 2e-09
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
S V F+ V E+ VLV F+A WCG C+ ++P+
Sbjct: 6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAAN 52
Score = 42.7 bits (101), Expect = 1e-05
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
S V F+ V E+ VLV F+A WCG C
Sbjct: 6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPC 40
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 53.2 bits (128), Expect = 3e-09
Identities = 4/42 (9%), Positives = 14/42 (33%)
Query: 235 AVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
++ + ++ F C +C ++ V ++
Sbjct: 13 SINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKE 54
Score = 41.7 bits (98), Expect = 3e-05
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 106 AVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
++ + ++ F C +C
Sbjct: 13 SINVVENLEEAKEGIPTIIMFKTDTCPYC 41
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 52.7 bits (127), Expect = 3e-09
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 230 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
G V+V + + + VT +K V+++F+A WCG CK + PV+E++ +
Sbjct: 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT 61
Score = 41.6 bits (98), Expect = 3e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
G V+V + + + VT +K V+++F+A WCG C
Sbjct: 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPC 48
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 52.6 bits (127), Expect = 3e-09
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
F VV + VLV+F+APWCG C+ + PV +E+
Sbjct: 10 TFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAG 46
Score = 42.2 bits (100), Expect = 1e-05
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
F VV + VLV+F+APWCG C
Sbjct: 10 TFKNVVLESSVPVLVDFWAPWCGPC 34
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 52.3 bits (126), Expect = 4e-09
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
++ E V +E V+V+F+APWCG CK + PV +E+ +
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAK 45
Score = 41.9 bits (99), Expect = 2e-05
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
++ E V +E V+V+F+APWCG C
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPC 33
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 52.3 bits (126), Expect = 4e-09
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
NF++ V ++K VLV+F+APWCG C+ + P+ EE+ +
Sbjct: 10 NFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAK 46
Score = 41.9 bits (99), Expect = 2e-05
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
NF++ V ++K VLV+F+APWCG C
Sbjct: 10 NFEQEVLKSDKPVLVDFWAPWCGPC 34
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 52.2 bits (126), Expect = 4e-09
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+FD V + +LV+F+A WCG CK + P+ +E+ +
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD 47
Score = 41.8 bits (99), Expect = 2e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V + +LV+F+A WCG C
Sbjct: 11 SFDTDVLKADGAILVDFWAEWCGPC 35
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 53.2 bits (128), Expect = 4e-09
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 230 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
V A K F + V LV+F+APWCG C+ ++P+ EE+
Sbjct: 33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEEL 75
Score = 42.0 bits (99), Expect = 3e-05
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 12/61 (19%)
Query: 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRIL-----KVAKGFADKFTF 155
V A K F + V LV+F+APWCG C R++ ++A+ A +
Sbjct: 33 PWVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPC------RLVSPILEELARDHAGRLKV 85
Query: 156 A 156
Sbjct: 86 V 86
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 52.8 bits (127), Expect = 4e-09
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
N V +++ F+A WC C + +++ +
Sbjct: 33 NIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQK 69
Score = 41.6 bits (98), Expect = 4e-05
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
N V +++ F+A WC C
Sbjct: 33 NIINGVNMKNTVIVLYFFAKWCQAC 57
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 51.9 bits (125), Expect = 5e-09
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+FD+ V VLV+F+A WCG CK + P E+G+
Sbjct: 11 SFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGK 47
Score = 41.5 bits (98), Expect = 3e-05
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD+ V VLV+F+A WCG C
Sbjct: 11 SFDQDVLKASGLVLVDFWAEWCGPC 35
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 52.0 bits (125), Expect = 6e-09
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+F V ++ K VLV+F+A WCG CK + PV EE+
Sbjct: 21 SFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT 57
Score = 41.6 bits (98), Expect = 3e-05
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+F V ++ K VLV+F+A WCG C
Sbjct: 21 SFATDVLSSNKPVLVDFWATWCGPC 45
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 51.5 bits (124), Expect = 7e-09
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
KNFD + + + +V+F+A WC C L P+ EE+ E
Sbjct: 7 KNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAE 43
Score = 40.4 bits (95), Expect = 7e-05
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHC 134
KNFD + + + +V+F+A WC C
Sbjct: 7 KNFDSFL-ASHEIAVVDFWAEWCAPC 31
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 51.6 bits (124), Expect = 8e-09
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
NFDEV+ N K VLV+ +A WC C P+Y++V E
Sbjct: 13 NFDEVI-RNNKLVLVDCWAEWCAPCHLYEPIYKKVAE 48
Score = 40.4 bits (95), Expect = 6e-05
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
NFDEV+ N K VLV+ +A WC C
Sbjct: 13 NFDEVI-RNNKLVLVDCWAEWCAPC 36
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 51.6 bits (124), Expect = 8e-09
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ + VLV+F+A WCG C++L + + E
Sbjct: 13 EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEA 51
Score = 38.9 bits (91), Expect = 2e-04
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ + VLV+F+A WCG C
Sbjct: 13 EALLNRIKEAPGLVLVDFFATWCGPC 38
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 52.9 bits (127), Expect = 2e-08
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
S + +FD V + +LV+F+A WCG CK + P+ +E+ +
Sbjct: 11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD 57
Score = 42.1 bits (99), Expect = 6e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
S + +FD V + +LV+F+A WCG C
Sbjct: 11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPC 45
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 50.9 bits (122), Expect = 2e-08
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
KN +E +K +V+FYA WCG CK + P+ +E+ +
Sbjct: 28 KNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAK 65
Score = 40.5 bits (95), Expect = 9e-05
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHC 134
KN +E +K +V+FYA WCG C
Sbjct: 28 KNPEEWKYEGDKPAIVDFYADWCGPC 53
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 50.0 bits (120), Expect = 2e-08
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
NF + + + VLV+F+A WCG C+ + PV EE E
Sbjct: 9 NFQQAI-QGDGPVLVDFWAAWCGPCRMMAPVLEEFAE 44
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
NF + + + VLV+F+A WCG C
Sbjct: 9 NFQQAI-QGDGPVLVDFWAAWCGPC 32
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 50.0 bits (120), Expect = 3e-08
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
NFDE + VLV+F+A WC C+ + P+ EE+ +
Sbjct: 10 NFDETL-GQHPLVLVDFWAEWCAPCRMIAPILEEIAK 45
Score = 40.0 bits (94), Expect = 1e-04
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
NFDE + VLV+F+A WC C
Sbjct: 10 NFDETL-GQHPLVLVDFWAEWCAPC 33
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 49.6 bits (119), Expect = 4e-08
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ + + VL+ CG C + V E
Sbjct: 9 EELATYIEEQQL-VLLFIKTENCGVCDVMLRKVNYVLEN 46
Score = 36.5 bits (85), Expect = 0.001
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 109 KNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ + + VL+ CG C
Sbjct: 9 EELATYIEEQQL-VLLFIKTENCGVC 33
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 49.2 bits (118), Expect = 5e-08
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 229 SGPVKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
G V F +V +K V+++ + WCG K + P YE++ E+
Sbjct: 4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEE 52
Score = 37.7 bits (88), Expect = 6e-04
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 100 SGPVKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHC 134
G V F +V +K V+++ + WCG
Sbjct: 4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPS 39
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 49.7 bits (119), Expect = 5e-08
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 225 PEDNSGPVKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
E G V F +V +K V+++ + WCG CK + P YE++ E+
Sbjct: 13 MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEE 65
Score = 37.8 bits (88), Expect = 6e-04
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 96 PEDNSGPVKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHC 134
E G V F +V +K V+++ + WCG C
Sbjct: 13 MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPC 52
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 48.9 bits (117), Expect = 7e-08
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 228 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ + + ++++FYA WCG CK + P ++ +
Sbjct: 10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQA 58
Score = 36.9 bits (86), Expect = 0.001
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 99 NSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ + + ++++FYA WCG C
Sbjct: 10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPC 45
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 51.3 bits (123), Expect = 9e-08
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 239 NFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277
N +V+ VL F++ HC +LTP+ E + +
Sbjct: 16 NLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY 55
Score = 43.6 bits (103), Expect = 2e-05
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 110 NFDEVVTN-NEKDVLVEFYAPWCGHCTNYWRNRIL-KVAKGFADKFTFA 156
N +V+ VL F++ HC IL +A + +F A
Sbjct: 16 NLQQVLEQSMTTPVLFYFWSERSQHCLQL--TPILESLAAQYNGQFILA 62
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 49.5 bits (118), Expect = 1e-07
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 229 SGPVKVAVAKNFDEVVTNN-EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ +V A F+E++ + ++V F+APW C ++ V E+ ++
Sbjct: 12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKE 60
Score = 39.1 bits (91), Expect = 3e-04
Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 14/147 (9%)
Query: 100 SGPVKVAVAKNFDEVVTNN-EKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAIS 158
+ +V A F+E++ + ++V F+APW C ++ +V A +
Sbjct: 12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQC-----AQMNEVMAELAKELPQVSF 66
Query: 159 AK---DDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEV 215
K + ++ VP+ +F + + +K D L + + +
Sbjct: 67 VKLEAEGVPEVSEKYEISSVPT---FLFFK--NSQKIDRLDGAHAPELTKKVQRHASSGS 121
Query: 216 DPYIKSEPVPEDNSGPVKVAVAKNFDE 242
V D + +A +
Sbjct: 122 FLPSAKVKVDTDPNSSSVDKLAAALEH 148
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 48.5 bits (116), Expect = 1e-07
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 229 SGPVKVAVAKNFDEVVTNN-EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
S +++ + + ++ + K V+V+F+A WCG CK + P+++E+ EK
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEK 61
Score = 36.2 bits (84), Expect = 0.002
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 100 SGPVKVAVAKNFDEVVTNN-EKDVLVEFYAPWCGHC 134
S +++ + + ++ + K V+V+F+A WCG C
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPC 48
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 47.7 bits (114), Expect = 2e-07
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ A FD + +K V+V+FYA WCG CK + P+ E+ E+
Sbjct: 9 TQFKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQ 52
Score = 35.7 bits (83), Expect = 0.003
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
+ A FD + +K V+V+FYA WCG C
Sbjct: 9 TQFKTASEFDSAI-AQDKLVVVDFYATWCGPC 39
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 47.8 bits (114), Expect = 2e-07
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 230 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
V + + + + + F A WCG CK + E++ +
Sbjct: 19 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYE 65
Score = 36.2 bits (84), Expect = 0.002
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 101 GPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHC 134
V + + + + + F A WCG C
Sbjct: 19 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPC 52
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 47.3 bits (113), Expect = 2e-07
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+F +E VL +F+APWCG K + PV EE+ +
Sbjct: 10 SFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQ 44
Score = 36.5 bits (85), Expect = 0.002
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+F +E VL +F+APWCG
Sbjct: 10 SFSAET--SEGVVLADFWAPWCGPS 32
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 46.9 bits (112), Expect = 3e-07
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
FD +++ N + V+V+F+A WCG CK++ P YEE +
Sbjct: 18 EFDSIISQN-ELVIVDFFAEWCGPCKRIAPFYEECSKT 54
Score = 35.0 bits (81), Expect = 0.006
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
FD +++ N + V+V+F+A WCG C
Sbjct: 18 EFDSIISQN-ELVIVDFFAEWCGPC 41
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 46.6 bits (111), Expect = 4e-07
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+FD V LV+F+A CG CK + PV EE+
Sbjct: 12 DFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAA 46
Score = 36.2 bits (84), Expect = 0.002
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+FD V LV+F+A CG C
Sbjct: 12 DFDSKV--ESGVQLVDFWATACGPC 34
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 46.5 bits (111), Expect = 4e-07
Identities = 10/39 (25%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 239 NFDEVVTNN-EKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ ++++ N + ++V+F+A WCG C+ + P E + ++
Sbjct: 9 DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKE 47
Score = 34.5 bits (80), Expect = 0.006
Identities = 8/26 (30%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 110 NFDEVVTNN-EKDVLVEFYAPWCGHC 134
+ ++++ N + ++V+F+A WCG C
Sbjct: 9 DLEKLINENKGRLIVVDFFAQWCGPC 34
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 47.1 bits (112), Expect = 4e-07
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 220 KSEPVPEDNSGPVKVAVAKNFDEVVTNNEKD-----------VLVEFYAPWCGHCKKLTP 268
E F + + + E +V+FYA WCG CK + P
Sbjct: 12 TDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAP 71
Query: 269 VYEEVGE 275
+ EE+ +
Sbjct: 72 ILEELSK 78
Score = 36.4 bits (84), Expect = 0.002
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 11/55 (20%)
Query: 91 KSEPVPEDNSGPVKVAVAKNFDEVVTNNEKD-----------VLVEFYAPWCGHC 134
E F + + + E +V+FYA WCG C
Sbjct: 12 TDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPC 66
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 46.6 bits (111), Expect = 6e-07
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 226 EDNSGPVK-VAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ G VK + F E + +K V+V+F A WCG K + P + + EK
Sbjct: 7 HHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEK 59
Score = 34.2 bits (79), Expect = 0.011
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 97 EDNSGPVK-VAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFT 154
+ G VK + F E + +K V+V+F A WCG I ++K++
Sbjct: 7 HHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPS-----KMIKPFFHSLSEKYS 61
Query: 155 FAISAK---DDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFS---VENLESFLT 208
I + DD Q +E +P+ F + G+K EFS E LE+ +
Sbjct: 62 NVIFLEVDVDDCQDVASECEVKSMPT---FQFFK--KGQK---VGEFSGANKEKLEATIN 113
Query: 209 KVV 211
++V
Sbjct: 114 ELV 116
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 46.2 bits (110), Expect = 6e-07
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ +K +++ F+ W CK L V+E + +
Sbjct: 12 TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNE 49
Score = 33.9 bits (78), Expect = 0.013
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+ +K +++ F+ W C
Sbjct: 12 TYLTTTAAGDKLIVLYFHTSWAEPC 36
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 46.7 bits (111), Expect = 8e-07
Identities = 4/40 (10%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 237 AKNFDEVV-TNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
A D+ + + +L+ + E+
Sbjct: 24 ASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLR 63
Score = 35.9 bits (83), Expect = 0.003
Identities = 3/28 (10%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 108 AKNFDEVV-TNNEKDVLVEFYAPWCGHC 134
A D+ + + +L+
Sbjct: 24 ASTVDDWIKRVGDGVILLSSDPRRTPEV 51
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 45.7 bits (109), Expect = 9e-07
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 239 NFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ D +T + K V+++F+A WCG CK ++P E+ +
Sbjct: 10 DLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQ 48
Score = 34.2 bits (79), Expect = 0.010
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 110 NFDEVVTN-NEKDVLVEFYAPWCGHC 134
+ D +T + K V+++F+A WCG C
Sbjct: 10 DLDGQLTKASGKLVVLDFFATWCGPC 35
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 45.4 bits (108), Expect = 9e-07
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 232 VKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
V +F ++ + +V+F CG C ++ P + + K
Sbjct: 4 KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNK 49
Score = 34.2 bits (79), Expect = 0.010
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 103 VKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHC 134
V +F ++ + +V+F CG C
Sbjct: 4 KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPC 36
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 45.8 bits (109), Expect = 9e-07
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 227 DNSGPVKVAVAKNFDEVV---TNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ + + FD + + K V+++F A WCG C+ + PV+ E +K
Sbjct: 4 EEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKK 56
Score = 34.6 bits (80), Expect = 0.009
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 98 DNSGPVKVAVAKNFDEVV---TNNEKDVLVEFYAPWCGHC 134
+ + + FD + + K V+++F A WCG C
Sbjct: 4 EEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPC 43
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 45.4 bits (108), Expect = 1e-06
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 232 VKVAVAKNFDEVVT---NNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ + +D + K ++V+F A WCG CK + P++E +
Sbjct: 5 IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSND 52
Score = 34.2 bits (79), Expect = 0.009
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 103 VKVAVAKNFDEVVT---NNEKDVLVEFYAPWCGHC 134
+ + +D + K ++V+F A WCG C
Sbjct: 5 IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPC 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 1e-06
Identities = 55/365 (15%), Positives = 93/365 (25%), Gaps = 126/365 (34%)
Query: 7 NYWRNRILKVAKGFADKFTFAISA---------KDDFQHELNE----FGFDYVPSDKP-- 51
+ + R L ++ G + + + ++ F L E F D P+
Sbjct: 2 DAYSTRPLTLSHG-SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 52 ----LVFV--RAEDGKKYAMKDEFSVENLESFLTKVVAG-EVDPYIKSEPVPEDNSGPVK 104
L +V E K D+ L F + G ++ D +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQF-DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 105 VAVAKNF-------DEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAI 157
+ KN+ L V +G A AI
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFR------------------AVGEGNAQ--LVAI 159
Query: 158 -----SAKDDFQHELNEFGFDYVPSDKPLVFVRAE----------DGKKYAMKDEFS-VE 201
+ D F+ EL + Y L+ AE D +K F+
Sbjct: 160 FGGQGNTDDYFE-ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-----FTQGL 213
Query: 202 NLESFLTKVVAGEVDPYIKSEPVPEDNSGPV--------KVAVAKNFD----EV------ 243
N+ +L Y+ S P+ S P+ V AK E+
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPI----SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 244 VTNNEKDVLV-----------EFYAP---------WCG-HCKKLTPVY----------EE 272
T + + ++ F+ + G C + P E
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 273 VGEKA 277
E
Sbjct: 330 NNEGV 334
Score = 42.7 bits (100), Expect = 1e-04
Identities = 54/301 (17%), Positives = 94/301 (31%), Gaps = 136/301 (45%)
Query: 29 SAKDDF----QHELNEFGF---DYV---PSDKPLVFVRAEDGKKYAMKDEFSVENLESFL 78
+A+D + H + +GF D V P + + F E GK+ EN + +
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-GGEKGKRIR-------ENYSAMI 1692
Query: 79 TKVVAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVT----NNEKDVLV--EF------ 126
+ + D +K+E + ++ +E T +EK +L +F
Sbjct: 1693 FETIV---DGKLKTEKIFKE------------INEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 127 ---YAPWCGHCTNYWRNRILKVAKGFADK-FTFAISAKDDFQHELNEF-------GF--- 172
A + LK +KG TFA H L E+
Sbjct: 1738 LMEKAAF----------EDLK-SKGLIPADATFA-------GHSLGEYAALASLADVMSI 1779
Query: 173 -DYVPSDKPLVFVRA----------EDGK-KYAM--------KDEFSVENLESFLTK--- 209
V +VF R E G+ Y M FS E L+ + +
Sbjct: 1780 ESLVE----VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 210 ------------------VVAGE---VDP------YIKSEPVPEDNSGPVKVAVAKNFDE 242
V AG+ +D +IK + + +++ + + +E
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID-----IIELQKSLSLEE 1890
Query: 243 V 243
V
Sbjct: 1891 V 1891
Score = 31.9 bits (72), Expect = 0.28
Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 64/202 (31%)
Query: 106 AVAKN-FDE---------------VVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGF 149
A++ ++ +V NN ++ + F G R + F
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF----GGEKGKRIRENYSAMI--F 1693
Query: 150 ADKFTFAISAKDDFQHELNEFGFDYV---PSDK--------PLVFV--RA--EDGKKYAM 194
+ + F+ E+NE Y P + + +A ED K +
Sbjct: 1694 ETIVDGKLKTEKIFK-EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 195 KD-----------EFS-------VENLESFLTKVVA--GEVDPYIKSEPVPEDNSGPVKV 234
E++ V ++ES + +VV G VP D G
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLV-EVVFYRGM----TMQVAVPRDELGRSNY 1807
Query: 235 A-VAKNFDEVVTNNEKDVLVEF 255
+A N V + ++ L
Sbjct: 1808 GMIAINPGRVAASFSQEALQYV 1829
Score = 27.3 bits (60), Expect = 7.7
Identities = 30/164 (18%), Positives = 48/164 (29%), Gaps = 78/164 (47%)
Query: 12 RILKVAKGFADK-FTFAISAKDDFQHELNEF-------GF----DYVPSDKPLVFVRA-- 57
LK +KG TFA H L E+ V +VF R
Sbjct: 1745 EDLK-SKGLIPADATFA-------GHSLGEYAALASLADVMSIESLVE----VVFYRGMT 1792
Query: 58 --------EDGK-KYAM--------KDEFSVENLESFLTK-------------------- 80
E G+ Y M FS E L+ + +
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 81 -VVAGE---VDP------YIKSEPVPEDNSGPVKVAVAKNFDEV 114
V AG+ +D +IK + + +++ + + +EV
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKID-----IIELQKSLSLEEV 1891
Score = 26.9 bits (59), Expect = 9.8
Identities = 8/75 (10%), Positives = 22/75 (29%), Gaps = 32/75 (42%)
Query: 235 AVAKN-FDE---------------VVTNNEKDVLVEF----------------YAPWCGH 262
A++ ++ +V NN ++ + F +
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 263 CKKLTPVYEEVGEKA 277
K +++E+ E +
Sbjct: 1700 KLKTEKIFKEINEHS 1714
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 45.9 bits (109), Expect = 1e-06
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 217 PYIKSEPVPEDNSGPVKVAVAKNFDEVVT---NNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
P E + + + FD +T K V+++F A WCG C+ + PV+ E
Sbjct: 2 PMAAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEY 61
Query: 274 GEK 276
+K
Sbjct: 62 AKK 64
Score = 34.3 bits (79), Expect = 0.011
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 88 PYIKSEPVPEDNSGPVKVAVAKNFDEVVT---NNEKDVLVEFYAPWCGHC 134
P E + + + FD +T K V+++F A WCG C
Sbjct: 2 PMAAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPC 51
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 45.0 bits (107), Expect = 1e-06
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 232 VKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
++ F E + +K V+V+F A WCG CK + P + + EK
Sbjct: 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEK 48
Score = 33.4 bits (77), Expect = 0.019
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 103 VKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAK- 160
++ F E + +K V+V+F A WCG C I ++K++ I +
Sbjct: 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPC-----KMIKPFFHSLSEKYSNVIFLEV 57
Query: 161 --DDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFS---VENLESFLTKVV 211
DD Q +E +P+ F + G+K EFS E LE+ + ++V
Sbjct: 58 DVDDCQDVASESEVKSMPT---FQFFK--KGQK---VGEFSGANKEKLEATINELV 105
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 45.1 bits (107), Expect = 2e-06
Identities = 7/46 (15%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 232 VKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+++ + ++V ++ ++++F A WC C K+ ++
Sbjct: 23 IELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNY 68
Score = 33.6 bits (77), Expect = 0.022
Identities = 6/33 (18%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 103 VKVAVAKNFDEVVTN-NEKDVLVEFYAPWCGHC 134
+++ + ++V ++ ++++F A WC C
Sbjct: 23 IELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPC 55
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 44.6 bits (106), Expect = 2e-06
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 239 NFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+F++ ++K ++V+F A WC CK + P++ E+ +K
Sbjct: 18 HFEKG-KGSQKLIVVDFTASWCPPCKMIAPIFAELAKK 54
Score = 32.7 bits (75), Expect = 0.031
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 110 NFDEVVTNNEKDVLVEFYAPWCGHC 134
+F++ ++K ++V+F A WC C
Sbjct: 18 HFEKG-KGSQKLIVVDFTASWCPPC 41
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 44.7 bits (106), Expect = 2e-06
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 219 IKSEPVPEDNSGPVK-VAVAKNFDEVV---TNNEKDVLVEFYAPWCGHCKKLTPVYEEVG 274
+ + + V V + + + +K V+++F A WCG C+ + PV+ ++
Sbjct: 1 MAASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLA 60
Query: 275 EK 276
+K
Sbjct: 61 KK 62
Score = 33.1 bits (76), Expect = 0.029
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 90 IKSEPVPEDNSGPVK-VAVAKNFDEVV---TNNEKDVLVEFYAPWCGHC 134
+ + + V V + + + +K V+++F A WCG C
Sbjct: 1 MAASATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPC 49
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 44.8 bits (106), Expect = 3e-06
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCG--------------HCKKLTPVYEEVG 274
S + +FD V + +LV+F+A WCG CK + P+ +E+
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61
Query: 275 E 275
+
Sbjct: 62 D 62
Score = 39.8 bits (93), Expect = 2e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCG 132
S + +FD V + +LV+F+A WCG
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCG 34
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 44.3 bits (105), Expect = 3e-06
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 225 PEDNSGPVKVAVAKNFDEV---VTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ + + ++E ++ V+V+F A WCG C+ + P + ++ +K
Sbjct: 12 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK 66
Score = 33.1 bits (76), Expect = 0.032
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 96 PEDNSGPVKVAVAKNFDEV---VTNNEKDVLVEFYAPWCGHC 134
+ + + ++E ++ V+V+F A WCG C
Sbjct: 12 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPC 53
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 44.8 bits (106), Expect = 4e-06
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 221 SEPVPEDNSGPVK-VAVAKNFDEVV---TNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
EP E G V + + +D+ + + + K VL F A WCG +++ P Y E+ E
Sbjct: 15 DEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSEN 74
Score = 33.2 bits (76), Expect = 0.034
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 92 SEPVPEDNSGPVK-VAVAKNFDEVV---TNNEKDVLVEFYAPWCGHC 134
EP E G V + + +D+ + + + K VL F A WCG
Sbjct: 15 DEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPS 61
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 43.0 bits (102), Expect = 5e-06
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K + F +P C HC V EEV +
Sbjct: 3 KVKIELFTSPMCPHCPAAKRVVEEVANE 30
Score = 34.2 bits (79), Expect = 0.007
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 120 KDVLVEFYAPWCGHCTNYWRNRIL-KVAKGFADKFTFAISAKDDFQHELNEFGFDYVP 176
K + F +P C HC R++ +VA D + + E+G VP
Sbjct: 3 KVKIELFTSPMCPHCPAA--KRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVP 58
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 43.7 bits (103), Expect = 7e-06
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 230 GPVKVAVAKNFDEVVTNNEKD--VLVEFYAPWCGHCKKLTPVYEEVGEK 276
G ++ + VTN EKD V++ Y C + + K
Sbjct: 10 GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARK 58
Score = 43.3 bits (102), Expect = 1e-05
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 16/131 (12%)
Query: 101 GPVKVAVAKNFDEVVTNNEKD--VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAIS 158
G ++ + VTN EKD V++ Y C + + A KF
Sbjct: 10 GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMC-----LVVNQHLSVLARKFPETKF 64
Query: 159 AKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKY------AMKDEFSVENLESFLTKVVA 212
K + + + +P+ + + + +E LE L++V A
Sbjct: 65 VKAIVNSCIEHYHDNCLPT---IFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGA 121
Query: 213 GEVDPYIKSEP 223
+ D S P
Sbjct: 122 IQSDLEENSGP 132
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 42.8 bits (101), Expect = 9e-06
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 230 GPVKVAVAKNFDEVVTNNEKD--VLVEFYAPWCGHCKKLTPVYEEVGEK 276
G ++ + VTN E+D V++ Y C + + K
Sbjct: 3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARK 51
Score = 40.5 bits (95), Expect = 7e-05
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 101 GPVKVAVAKNFDEVVTNNEKD--VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAIS 158
G ++ + VTN E+D V++ Y C + + A KF
Sbjct: 3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMC-----LLVNQHLSLLARKFPETKF 57
Query: 159 AKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAM------KDEFSVENLESFLTKV 210
K + + + +P+ + + + + +E LE L +V
Sbjct: 58 VKAIVNSCIQHYHDNCLPT---IFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 43.2 bits (102), Expect = 1e-05
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 239 NFDEVV---TNNEKDVLVEFYAPWCGHCKKLTPV---YEEVGE 275
+F E + +K + V+ + WCG CK+L+ V V +
Sbjct: 15 SFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVAD 57
Score = 36.3 bits (84), Expect = 0.003
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 110 NFDEVV---TNNEKDVLVEFYAPWCGHC 134
+F E + +K + V+ + WCG C
Sbjct: 15 SFPEALKRAEVEDKLLFVDCFTTWCGPC 42
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 42.6 bits (100), Expect = 1e-05
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 20/120 (16%)
Query: 97 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFA 156
DN ++V E + + ++ C +C + G +
Sbjct: 8 LDNIKDLEVTTVVRAQEAL-DKKETATFFIGRKTCPYC-----RKFAGTLSGVVAETKAH 61
Query: 157 I--------SAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKD-EFSVENLESFL 207
I S +D Q + +G VP FV DG+ D S + ++ F
Sbjct: 62 IYFINSEEPSQLNDLQAFRSRYGIPTVPG-----FVHITDGQINVRCDSSMSAQEIKDFA 116
Score = 38.8 bits (90), Expect = 3e-04
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 226 EDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
DN ++V E + + ++ C +C+K V +
Sbjct: 8 LDNIKDLEVTTVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAE 57
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 42.6 bits (100), Expect = 2e-05
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 237 AKNFDEVVTNNE-KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K D+ + + K +++ F C +L + +
Sbjct: 11 KKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSD 51
Score = 34.6 bits (79), Expect = 0.011
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 108 AKNFDEVVTNNE-KDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHE 166
K D+ + + K +++ F C + K + + + D
Sbjct: 11 KKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDD-ILSKTSSDLSKMAAIYLVDVDQTAVY 69
Query: 167 LNEFGFDYVPS 177
F Y+PS
Sbjct: 70 TQYFDISYIPS 80
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 40.9 bits (96), Expect = 6e-05
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 232 VKVAVAKNFDEVVTNNE-KDVLVEFYAPWCGHCKKLTPVYEE 272
++ ++ + + K V+++ YA WC CK+
Sbjct: 14 TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFS 55
Score = 36.3 bits (84), Expect = 0.002
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 103 VKVAVAKNFDEVVTNNE-KDVLVEFYAPWCGHC 134
++ ++ + + K V+++ YA WC C
Sbjct: 14 TQIKTVDELNQALVEAKGKPVMLDLYADWCVAC 46
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 41.6 bits (97), Expect = 7e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277
+ ++V + WCG CK L P + E E +
Sbjct: 45 SGLPLMVIIHKSWCGACKALKPKFAESTEIS 75
Score = 34.7 bits (79), Expect = 0.015
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 118 NEKDVLVEFYAPWCGHC 134
+ ++V + WCG C
Sbjct: 45 SGLPLMVIIHKSWCGAC 61
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 38.8 bits (91), Expect = 1e-04
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 251 VLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ F +P C +C V +E ++
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKE 29
Score = 36.5 bits (85), Expect = 0.001
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 122 VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPS---D 178
+ F +P C +C + + K F DK + + E+G VP+ +
Sbjct: 4 NIEVFTSPTCPYCPMAIEV-VDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62
Query: 179 KPLVFV 184
+ FV
Sbjct: 63 GVVRFV 68
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 41.2 bits (96), Expect = 2e-04
Identities = 19/175 (10%), Positives = 47/175 (26%), Gaps = 24/175 (13%)
Query: 103 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYW--RNRILKVAKGFA--DKFTFAIS 158
V++ + + + + + A C C ++V DK I
Sbjct: 7 VRMQLKELAQKEFKE-PVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIY 65
Query: 159 AKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKVVAGEVDPY 218
+ + E ++G D VP+ + + + + + + +
Sbjct: 66 SPFTHKEETEKYGVDRVPT----IVIEGDKDYGIRYIGLPAGLEFTTLINGI-------- 113
Query: 219 IKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
S K + + + + F CG+C + +
Sbjct: 114 -------FHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDF 161
Score = 38.9 bits (90), Expect = 0.001
Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 232 VKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
V++ + + + + + A C C+ + +E E
Sbjct: 7 VRMQLKELAQKEFKE-PVSIKLFSQAIGCESCQTAEELLKETVE 49
Score = 28.1 bits (62), Expect = 2.4
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 8/83 (9%)
Query: 98 DNSGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAI 157
S K + + + + F CG+C +A FA +
Sbjct: 115 HVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYC-----PSAAVMAWDFALANDYIT 169
Query: 158 SAKDD---FQHELNEFGFDYVPS 177
S D Q +F VP
Sbjct: 170 SKVIDASENQDLAEQFQVVGVPK 192
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 37.7 bits (88), Expect = 0.001
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEV 273
+ ++ FY P C +C+K ++ E+
Sbjct: 28 QYTMLFFYDPDCSNCRKFEKLFAEI 52
Score = 32.7 bits (75), Expect = 0.049
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 120 KDVLVEFYAPWCGHC--TNYWRNRILKVAKGFADK-FTF-AISAKDD 162
+ ++ FY P C +C I + + AI ++
Sbjct: 28 QYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDEN 74
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 37.9 bits (88), Expect = 0.001
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 113 EVVTNNEKDVLVEFYAPWCGHCTNY---WRNRILKVAKGFADKFTFAISAKDDFQHELNE 169
+ N+ + V FY+P C HC + WR + AK D +
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWR----EFAKEVDGLLRIGAVNCGDDRMLCRM 163
Query: 170 FGFDYVPSDKPLVFVRAEDGKKYAMKD-EFSVENLESFLTKVVAGEV 215
G + PS L G + + S E+L +F + V V
Sbjct: 164 KGVNSYPS---LFIF--RSGMAAVKYNGDRSKESLVAFAMQHVRSTV 205
Score = 37.5 bits (87), Expect = 0.002
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 242 EVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ N+ + V FY+P C HC L P + E ++
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKE 142
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 36.6 bits (85), Expect = 0.002
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEE 272
+ L+ P C C ++ +
Sbjct: 32 EYTLLFINNPGCHACAEMIEGLKA 55
Score = 32.7 bits (75), Expect = 0.045
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 120 KDVLVEFYAPWCGHC 134
+ L+ P C C
Sbjct: 32 EYTLLFINNPGCHAC 46
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 37.3 bits (86), Expect = 0.003
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 237 AKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277
+F++ V +V+F + + + A
Sbjct: 23 ELSFEKTV-ERFPYSVVKFDIASP--YGEKHEAFTAFSKSA 60
Score = 32.3 bits (73), Expect = 0.12
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 108 AKNFDEVVTNNEKDVLVEFYA--PWCGHCTNYWRNRILKVAKGFADKFTFA-ISAKDDFQ 164
+F++ V +V+F P+ + K A A + KD +
Sbjct: 23 ELSFEKTV-ERFPYSVVKFDIASPYGEKHEAF--TAFSKSAHKATKDLLIATVGVKDYGE 79
Query: 165 HELNEFG--FDYVPSDKPLVFV---RAEDGKKYAMKDEFSVENLESFL 207
E G + + P +F+ A++ + + +++NL++F+
Sbjct: 80 LENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFV 127
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 35.8 bits (83), Expect = 0.004
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K ++ F+ CGHC++ TP + K
Sbjct: 32 KYTILFFWDSQCGHCQQETPKLYDWWLK 59
Score = 31.5 bits (72), Expect = 0.12
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 120 KDVLVEFYAPWCGHC 134
K ++ F+ CGHC
Sbjct: 32 KYTILFFWDSQCGHC 46
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 34.9 bits (80), Expect = 0.009
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 246 NNEKDVLVEFYAPWCGHCKKLTPVYEE 272
K L+ F A WC C+ L
Sbjct: 27 RTHKPTLLVFGANWCTDCRALDKSLRN 53
Score = 29.9 bits (67), Expect = 0.39
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 117 NNEKDVLVEFYAPWCGHC 134
K L+ F A WC C
Sbjct: 27 RTHKPTLLVFGANWCTDC 44
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 35.8 bits (82), Expect = 0.009
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 229 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEV 273
S + + + ++ ++ F P C +C + +
Sbjct: 115 SREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKF 159
Score = 30.4 bits (68), Expect = 0.45
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 100 SGPVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWR--NRI-LKVAKGFADKFTFA 156
S + + + ++ ++ F P C +C R ++ ++ K K
Sbjct: 115 SREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGD 174
Query: 157 ISAKDDFQHELNEFGFDYVPS 177
+ ++ +++ VP
Sbjct: 175 MVEAIEYPEWADQYNVMAVPK 195
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 35.0 bits (80), Expect = 0.010
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPV 269
++K ++V + C + + L V
Sbjct: 43 SKKPLMVIHHLEDCQYSQALKKV 65
Score = 30.4 bits (68), Expect = 0.33
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 118 NEKDVLVEFYAPWCGHC 134
++K ++V + C +
Sbjct: 43 SKKPLMVIHHLEDCQYS 59
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 34.3 bits (79), Expect = 0.011
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 249 KDVLVEFYAPWCGHCKKL 266
+ V+V F++ C +C+++
Sbjct: 20 RMVMVYFHSEHCPYCQQM 37
Score = 30.0 bits (68), Expect = 0.35
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 120 KDVLVEFYAPWCGHC 134
+ V+V F++ C +C
Sbjct: 20 RMVMVYFHSEHCPYC 34
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 34.3 bits (78), Expect = 0.028
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 237 AKNFDEVVTNNEKD--VLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ F E + +K ++V Y C L + +
Sbjct: 120 GEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAE 161
Score = 30.8 bits (69), Expect = 0.34
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 18/113 (15%)
Query: 108 AKNFDEVVTNNEKD--VLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFA--ISAKDDF 163
+ F E + +K ++V Y C + + A ++ K
Sbjct: 120 GEQFLETIEKEQKITTIVVHIYEDGIKGC-----DALNSSLICLAAEYPMVKFCKIKASN 174
Query: 164 QHELNEFGFDYVPSDKPLVFVRAEDGKKY------AMKDEFSVENLESFLTKV 210
+ F D +P+ L+ + + + +EF ++ESFL +
Sbjct: 175 TGAGDRFSSDVLPT---LLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY 224
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 32.7 bits (74), Expect = 0.058
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 244 VTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277
V N K + F P C CK+L +E++ +
Sbjct: 10 VRGNGKLKVAVFSDPDCPFCKRLEHEFEKMTDVT 43
Score = 27.7 bits (61), Expect = 3.0
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 115 VTNNEKDVLVEFYAPWCGHCTNYWRN 140
V N K + F P C C
Sbjct: 10 VRGNGKLKVAVFSDPDCPFCKRLEHE 35
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 31.5 bits (72), Expect = 0.13
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K V + F A WC C+ TPV E EK
Sbjct: 29 KTVFLYFSASWCPPCRGFTPVLAEFYEK 56
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 31.6 bits (72), Expect = 0.13
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K V F A WC + TP E +K
Sbjct: 29 KLVFFYFSASWCPPARGFTPQLIEFYDK 56
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 31.7 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K V F A WC C+ TP E EK
Sbjct: 49 KTVFFYFSASWCPPCRGFTPQLVEFYEK 76
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 31.3 bits (71), Expect = 0.15
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 249 KDVLVEFYAPWCGHCKKLTP----VYEEVGEK 276
+ F A WC C+ TP +Y E+ +
Sbjct: 27 DIIGFYFSAHWCPPCRGFTPILADMYSELVDD 58
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 31.3 bits (71), Expect = 0.16
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K V F A WC + TP + +
Sbjct: 29 KTVFFYFSASWCPPSRAFTPQLIDFYKA 56
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 31.5 bits (71), Expect = 0.19
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 244 VTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K ++EF+A C HC + P+ E+ +
Sbjct: 21 SDTPGKIEVLEFFAYTCPHCAAIEPMVEDWAKT 53
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 31.2 bits (70), Expect = 0.20
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K +VE + C HC + G +
Sbjct: 24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGAR 53
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 31.2 bits (70), Expect = 0.21
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+ V+ EF++ +C HC P+ ++ +
Sbjct: 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQ 45
Score = 27.0 bits (59), Expect = 6.1
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHEL 167
+ V+ EF++ +C HC + I ++ + + F + +
Sbjct: 17 SSSPVVSEFFSFYCPHCNTFE-PIIAQLKQQLPEGAKFQKNHVSFMGGNM 65
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 30.8 bits (70), Expect = 0.21
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ L+ F+A + + K
Sbjct: 33 RYTLLNFWAAYDAESRARNVQLANEVNK 60
Score = 27.0 bits (60), Expect = 4.9
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 120 KDVLVEFYAPWCGHC 134
+ L+ F+A +
Sbjct: 33 RYTLLNFWAAYDAES 47
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 31.5 bits (71), Expect = 0.21
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 234 VAVAKNFDEVVTNNEKD--VLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ + F E + +K ++V Y C L E + +
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAE 148
Score = 28.4 bits (63), Expect = 2.1
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 18/116 (15%)
Query: 105 VAVAKNFDEVVTNNEKD--VLVEFYAPWCGHCTNYWRNRIL-KVAKGFAD-KFTFAISAK 160
+ + F E + +K ++V Y C N L +A + KF ++
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDAL--NSSLECLAAEYPMVKFCKIRASN 161
Query: 161 DDFQHELNEFGFDYVPSDKPLVFVRAEDGKKY------AMKDEFSVENLESFLTKV 210
+ +P+ L+ + + ++F ++ESFL +
Sbjct: 162 TGAGDRFSSDV---LPT---LLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY 211
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 30.7 bits (70), Expect = 0.24
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K VLV+F+ C C+K TP +
Sbjct: 30 KYVLVDFWFAGCSWCRKETPYLLKTYNA 57
Score = 26.5 bits (59), Expect = 6.4
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 120 KDVLVEFYAPWCGHC 134
K VLV+F+ C C
Sbjct: 30 KYVLVDFWFAGCSWC 44
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 30.8 bits (70), Expect = 0.25
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K VL++F E+ K
Sbjct: 36 KVVLIDFTVYNNAMSAAHNLALRELYNK 63
Score = 26.2 bits (58), Expect = 7.7
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 120 KDVLVEFYAPWCGHC 134
K VL++F
Sbjct: 36 KVVLIDFTVYNNAMS 50
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 30.4 bits (69), Expect = 0.30
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ +L+ F+A WC + + + ++
Sbjct: 34 RYLLLNFWASWCDPQPEANAELKRLNKE 61
Score = 26.1 bits (58), Expect = 8.1
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 120 KDVLVEFYAPWCGHC 134
+ +L+ F+A WC
Sbjct: 34 RYLLLNFWASWCDPQ 48
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 30.0 bits (68), Expect = 0.38
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K ++ F+ PWC C P +V
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAA 52
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 30.4 bits (68), Expect = 0.40
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 249 KDVLVEFYAPWCGHCKKL 266
K V+++F C +C+K+
Sbjct: 48 KPVMLDFTGYGCVNCRKM 65
Score = 26.6 bits (58), Expect = 6.5
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 120 KDVLVEFYAPWCGHC 134
K V+++F C +C
Sbjct: 48 KPVMLDFTGYGCVNC 62
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 30.5 bits (68), Expect = 0.41
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 244 VTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
V+ K +VE + C HC P EK
Sbjct: 21 VSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEK 53
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 30.0 bits (68), Expect = 0.43
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K L+ F++ C CK+ P E +K
Sbjct: 30 KPTLIHFWSISCHLCKEAMPQVNEFRDK 57
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 29.3 bits (65), Expect = 0.46
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 231 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
P+ V +A + + + A WC HC+ ++ ++
Sbjct: 2 PLAVGLAAHL------RQIGG-TMYGAYWCPHCQDQKELFGAAFDQ 40
Score = 26.2 bits (57), Expect = 5.6
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 102 PVKVAVAKNFDEVVTNNEKDVLVEFYAPWCGHCTN 136
P+ V +A + + + A WC HC +
Sbjct: 2 PLAVGLAAHL------RQIGG-TMYGAYWCPHCQD 29
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 30.7 bits (69), Expect = 0.55
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K VL++F+A C +C++ P +
Sbjct: 83 KVVLIDFWAYSCINCQRAIPHVVGWYQA 110
Score = 26.5 bits (58), Expect = 9.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 120 KDVLVEFYAPWCGHC 134
K VL++F+A C +C
Sbjct: 83 KVVLIDFWAYSCINC 97
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 29.8 bits (67), Expect = 0.58
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
V++ F A WC C + + + + EK
Sbjct: 38 DVVILWFMAAWCPSCVYMADLLDRLTEK 65
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 29.6 bits (65), Expect = 0.70
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 241 DEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277
+ N+ + E +A CGHC+ + + ++A
Sbjct: 15 STSLENDGMAPVTEVFALSCGHCRNMENFLPVISQEA 51
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 29.2 bits (66), Expect = 0.94
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K + ++ +A WCG C+ P +E+ EK
Sbjct: 31 KYIYIDVWATWCGPCRGELPALKELEEK 58
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 29.6 bits (65), Expect = 1.0
Identities = 5/40 (12%), Positives = 14/40 (35%)
Query: 238 KNFDEVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEKA 277
+ + + + A WC HC+ ++ ++
Sbjct: 187 PLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV 226
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 29.0 bits (64), Expect = 1.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ K ++EF+ +C HC P+ ++G+
Sbjct: 21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKA 50
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 29.5 bits (66), Expect = 1.3
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 37 ELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKV 81
++ F FD P + + + F +E L F+ V
Sbjct: 57 DIELFHFDIGPFENMWPGIFVYMIHRSCGTSCFELEKLCRFIMSV 101
Score = 29.5 bits (66), Expect = 1.3
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 166 ELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKV 210
++ F FD P + + + F +E L F+ V
Sbjct: 57 DIELFHFDIGPFENMWPGIFVYMIHRSCGTSCFELEKLCRFIMSV 101
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 28.4 bits (64), Expect = 1.3
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K L+ F+ P C C P +
Sbjct: 29 KVTLINFWFPSCPGCVSEMPKIIKTAND 56
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 28.4 bits (64), Expect = 1.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K ++ F+APWC C+ PV +V
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAAS 53
Score = 28.0 bits (63), Expect = 1.9
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 120 KDVLVEFYAPWCGHCTNYWRN---RILKVAKGFADKFTFAISAKDD---FQHELNEFGFD 173
K ++ F+APWC C + + +VA + ++ D Q +N++
Sbjct: 26 KPAVLWFWAPWCPTC----QGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVK 81
Query: 174 YVPS 177
Sbjct: 82 TFTQ 85
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 29.0 bits (64), Expect = 1.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 244 VTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K ++EF+ +C HC L PV + +
Sbjct: 20 QQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKS 52
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 29.0 bits (64), Expect = 1.5
Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Query: 108 AKNFDEVVTNNEKDVLVEFYAPWCGHCTNYWR--NRI-LKVAKGFADKFTFAISAKDDFQ 164
+ + + + + P C +C + + K +
Sbjct: 127 DATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP 186
Query: 165 HELNEFGFDYVPS 177
+++G VPS
Sbjct: 187 DIADKYGVMSVPS 199
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 28.4 bits (64), Expect = 1.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
V ++F+A WCG C++ P ++ K
Sbjct: 29 SVVYLDFWASWCGPCRQSFPWMNQMQAK 56
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 28.3 bits (63), Expect = 1.6
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 247 NEKDVLVEF-YAPWCGHCKKL 266
+ K + + F + WC C K+
Sbjct: 46 DHKPIGLFFTGSDWCMWCIKM 66
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 28.0 bits (63), Expect = 1.8
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K V + F+ WC CKK P +
Sbjct: 27 KGVFLNFWGTWCEPCKKEFPYMANQYKH 54
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 28.4 bits (62), Expect = 1.9
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
+ +VEF++ +C C +
Sbjct: 14 DAPAVVEFFSFYCPPCYAFSQTMGVDQA 41
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 28.1 bits (63), Expect = 2.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 249 KDVLVEFYAPWCGHCKK 265
K V+++F A WCG C+K
Sbjct: 34 KVVMLQFTASWCGVCRK 50
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 27.9 bits (62), Expect = 2.2
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Query: 120 KDVLVEFYAPWCGHC----TNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYV 175
K +++ C + W N V + F F D E + Y
Sbjct: 43 KWLMINIQNVQDFACQCLNRDVWSNE--AVKNIIREHFIFWQVYHDS--EEGQRYIQFYK 98
Query: 176 PSDKP-LVFVRAEDGKKYAMKDEFSVENLESFLTKVV 211
D P + + G+K + V + +T +
Sbjct: 99 LGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFL 135
Score = 26.8 bits (59), Expect = 4.9
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 249 KDVLVEFYAPWCGHCKKL 266
K +++ C+ L
Sbjct: 43 KWLMINIQNVQDFACQCL 60
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 28.1 bits (63), Expect = 2.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 249 KDVLVEFYAPWCGHCKK----LTPVYEEVGEK 276
+V +A WCG C+K ++ Y+ +
Sbjct: 25 PVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG 56
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 28.2 bits (62), Expect = 2.3
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 248 EKDVLVEFYAPWCGHCKKLTPVYEEVGE 275
++EF++ +C HC + V
Sbjct: 113 GAPQVLEFFSFFCPHCYQFEEVLHISDN 140
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 27.9 bits (61), Expect = 2.6
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYE 271
+ ++EF++ +C HC + V
Sbjct: 22 EPQVLEFFSFYCPHCYQFEEVLH 44
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Length = 175
Score = 28.1 bits (63), Expect = 2.6
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 251 VLVEFYAPWCGHCKKLTPVYEEV 273
+VEF+ C +C++ + +
Sbjct: 25 TVVEFFDYNCPYCRRAMAEVQGL 47
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 28.0 bits (61), Expect = 2.8
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
N L++ ++ C C K +
Sbjct: 16 NADKTLIKVFSYACPFCYKYDKAVTGPVSE 45
Score = 27.2 bits (59), Expect = 4.5
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTF 155
N L++ ++ C C Y + V++ D F
Sbjct: 16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAF 53
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 27.3 bits (60), Expect = 2.9
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTP 268
+ L+ F P C +C +
Sbjct: 17 KAELRLLMFEQPGCLYCARWDA 38
Score = 26.1 bits (57), Expect = 7.3
Identities = 12/101 (11%), Positives = 29/101 (28%), Gaps = 15/101 (14%)
Query: 118 NEKDVLVEFYAPWCGHCTNYWRNRILKVAKGFADKFTFAISAKDDFQHELNEFGFDYVPS 177
+ L+ F P C +C W I + + + ++ + +
Sbjct: 17 KAELRLLMFEQPGCLYC-ARWDAEIAPQYPLTDEGRAAPVQ-----RLQMRDPLPPGLEL 70
Query: 178 DKPLV----FVRAEDGKKYA-----MKDEFSVENLESFLTK 209
+P+ FV + ++F L + +
Sbjct: 71 ARPVTFTPTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 27.7 bits (62), Expect = 2.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
+ ++ F+ WC CKK P ++ +
Sbjct: 35 QKTILHFWTSWCPPCKKELPQFQSFYDA 62
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 27.7 bits (62), Expect = 3.1
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 249 KDVLVEFYAPWCGHCKK----LTPVYEEVGEK 276
K +V F+A WC C+ + V + +
Sbjct: 35 KAYIVNFFATWCPPCRSEIPDMVQVQKTWASR 66
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 28.1 bits (62), Expect = 3.1
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 247 NEKDVLVEFYAPWCGHCKKLTP 268
+ ++ F P+C +CK+
Sbjct: 96 DAPVIVYVFADPFCPYCKQFWQ 117
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 27.7 bits (62), Expect = 3.1
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 249 KDVLVEFYAPWCGHCKK----LTPVYEEVGEK 276
+ V+V F+A WC C++ + + + K
Sbjct: 29 QVVIVNFWATWCPPCREEIPSMMRLNAAMAGK 60
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 27.6 bits (60), Expect = 3.5
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 242 EVVTNNEKDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
NEK V+ F C +C L +E +
Sbjct: 80 VYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL 114
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 27.3 bits (61), Expect = 3.8
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 249 KDVLVEFYAPWCGHCKK----LTPVYEEVGEK 276
K VLV F+A WC +C+ + + + +
Sbjct: 42 KIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG 73
Score = 26.9 bits (60), Expect = 4.8
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 26/121 (21%)
Query: 120 KDVLVEFYAPWCGHCTNYWRN---RILKVAKGFADK-FTF-AISAKDDFQHELNEFGFDY 174
K VLV F+A WC +C R+ + ++ K F A++ + F + +
Sbjct: 42 KIVLVNFWASWCPYC----RDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSF 97
Query: 175 -VPSDKPLVFVRA-------------EDGKKYAMKD---EFSVENLESFLTKVVAGEVDP 217
SD + G E+ + S+L +
Sbjct: 98 NFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGHHHHH 157
Query: 218 Y 218
+
Sbjct: 158 H 158
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 27.1 bits (60), Expect = 4.0
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 249 KDVLVEFYAPWCGHCKK-----LTPVYEEVGEK 276
K V+VE + C C ++ + E
Sbjct: 31 KVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES 63
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 27.0 bits (60), Expect = 4.1
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 5/33 (15%)
Query: 249 KDVLVEFYAPWCGHCKK-----LTPVYEEVGEK 276
K +++E + C C V E
Sbjct: 29 KVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED 61
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 26.6 bits (58), Expect = 4.9
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 232 VKVAVAKNFDEVVTNNEKDVLVEFYA--------PWCGHCKKLTPVYEEVGEKA 277
V V+ + F V + + ++ WC C + PV E +
Sbjct: 7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHI 60
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 27.0 bits (60), Expect = 5.0
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 249 KDVLVEFYAPWCGHCKKLTPVYEEVGEK 276
K L++F+A WC C E+ +
Sbjct: 39 KPTLIKFWASWCPLCLSELGQAEKWAQD 66
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 26.6 bits (59), Expect = 5.8
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 249 KDVLVEFYAPWCGHCKK 265
K +L+ F+A W +
Sbjct: 34 KSLLINFWASWNDSISQ 50
Score = 26.6 bits (59), Expect = 6.6
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 120 KDVLVEFYAPWCGHCTN 136
K +L+ F+A W +
Sbjct: 34 KSLLINFWASWNDSISQ 50
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 27.5 bits (60), Expect = 5.9
Identities = 12/75 (16%), Positives = 26/75 (34%)
Query: 22 DKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKV 81
+K K+ F+ + +F F + D P KK + ++ + + ++
Sbjct: 23 EKLLLLAKVKEGFETSVFDFPFKNIQPDSPYFVCLDPPCKKESAYNKVIGDKNRTVYHEI 82
Query: 82 VAGEVDPYIKSEPVP 96
E + IK
Sbjct: 83 NKTEFENMIKLRTKR 97
Score = 27.5 bits (60), Expect = 5.9
Identities = 12/75 (16%), Positives = 26/75 (34%)
Query: 151 DKFTFAISAKDDFQHELNEFGFDYVPSDKPLVFVRAEDGKKYAMKDEFSVENLESFLTKV 210
+K K+ F+ + +F F + D P KK + ++ + + ++
Sbjct: 23 EKLLLLAKVKEGFETSVFDFPFKNIQPDSPYFVCLDPPCKKESAYNKVIGDKNRTVYHEI 82
Query: 211 VAGEVDPYIKSEPVP 225
E + IK
Sbjct: 83 NKTEFENMIKLRTKR 97
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 27.1 bits (59), Expect = 6.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 246 NNEKDVLVEFYAPWCGHCKKLTP 268
EK V+ F CG+C KL
Sbjct: 84 PQEKHVITVFTDITCGYCHKLHE 106
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 26.5 bits (59), Expect = 7.1
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 249 KDVLVEFYAPWCGHCKK----LTPVYEEVGEK 276
K ++ F+A WC CK L V EE G
Sbjct: 31 KPAVIVFWASWCTVCKAEFPGLHRVAEETGVP 62
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 27.1 bits (59), Expect = 7.6
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 69 FSVENLESFLTKV--VAGEVDPYIKSEPVPEDNSGPVKVAVAKNFDEVVTNNEKDVLVEF 126
FS+E+LES + + G + + N+GP + + + D
Sbjct: 9 FSIEDLESVQITINNIVGAAKEAAEEKEKELVNAGPTLFPGLEGYRDDWNFKLLDRYEPV 68
Query: 127 YAPWCGHCT--NYWRNRILKVAKG 148
P C C Y + +G
Sbjct: 69 ITPMCDQCCYCTYGPCDLSGNKRG 92
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 26.1 bits (58), Expect = 9.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 249 KDVLVEFYAPWCGHCKK----LTPVYEEVGEK 276
K V ++F+A WC C + +E G+
Sbjct: 23 KKVYLKFWASWCSICLASLPDTDEIAKEAGDD 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.407
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,443,154
Number of extensions: 270857
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 985
Number of HSP's successfully gapped: 354
Length of query: 277
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,133,061
Effective search space: 764616285
Effective search space used: 764616285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)