BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9103
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 76/184 (41%)
Query: 10 IPSLKPELPNQAGATNSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQGA 69
+P+L PEL + N +LP L P L + +N +P+L L N +
Sbjct: 76 LPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 135
Query: 70 IPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGA 129
+P L P L + + N ++P+L EL N ++P L L + + N +
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195
Query: 130 LPGLKPELPNQARATNSQGAIPSLKPELPNQARATNSQGAIPSLRPELPNQAGATNSQGA 189
LP L EL N ++P+L L + N ++P L EL + N +
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS 255
Query: 190 IPSL 193
+P L
Sbjct: 256 LPML 259
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%)
Query: 25 NSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGAT 84
N+ +LP L PEL + N ++P L P L + +N +P+L L
Sbjct: 71 NNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 130
Query: 85 NSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGALPGLKPELPNQARAT 144
N ++P L P L + + N ++P+L EL N +LP L L + +
Sbjct: 131 NQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSD 190
Query: 145 NSQGAIPSLKPELPNQARATNSQGAIPSL 173
N ++P+L EL N ++P+L
Sbjct: 191 NQLASLPTLPSELYKLWAYNNRLTSLPAL 219
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 64/158 (40%), Gaps = 13/158 (8%)
Query: 45 NSQGAIPSLKPELPNQAGATN-SQGAIPSLKPELPNQAGATN-SQGAIPSLKPELPNQAG 102
N A+ LK L NQ ++ + SL LP Q +Q A+ SL PELP
Sbjct: 45 NRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISL-PELPASLE 103
Query: 103 ATNSQGAIPSLKPELP---NQAGATNSQGALPGLKPELPNQARATNSQGAIPSLKPELPN 159
++ S PELP N+Q L L PELP N+ + PELP
Sbjct: 104 YLDACDNRLSTLPELPASLKHLDVDNNQ--LTXL-PELPALLEYINADNNQLTXLPELPT 160
Query: 160 QARATNSQGAIPSLRPELPNQAGA----TNSQGAIPSL 193
+ + + PELP A TN ++P++
Sbjct: 161 SLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAV 198
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 6/129 (4%)
Query: 10 IPSLKPELPNQAGATN-SQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQG 68
+ SL LP Q +Q AL L PELP ++ S PELP +
Sbjct: 71 LSSLPDNLPPQITVLEITQNALISL-PELPASLEYLDACDNRLSTLPELPASLKHLDVDN 129
Query: 69 AIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGA----T 124
+ PELP N+ + PELP + + + PELP A T
Sbjct: 130 NQLTXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRNNQLTFLPELPESLEALDVST 189
Query: 125 NSQGALPGL 133
N +LP +
Sbjct: 190 NLLESLPAV 198
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 64/159 (40%), Gaps = 15/159 (9%)
Query: 25 NSQGALPGLKPELPNQ-ARTTNSQGAIPSLKPELPNQAGATN-SQGAIPSLKPELPNQA- 81
N A+ LK L NQ + ++ + SL LP Q +Q A+ SL PELP
Sbjct: 45 NRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISL-PELPASLE 103
Query: 82 ---GATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGALPGLKPELP 138
N +P L L + N +P L P L A N+Q L L PELP
Sbjct: 104 YLDACDNRLSTLPELPASLKHLDVDNNQLTXLPEL-PALLEYINADNNQ--LTXL-PELP 159
Query: 139 NQARATNSQGAIPSLKPELPNQARA----TNSQGAIPSL 173
+ + + PELP A TN ++P++
Sbjct: 160 TSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAV 198
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 6 SQGAIPSLKPELPNQAGATNSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATN 65
+Q A+ SL PELP ++ PELP + + + PELP N
Sbjct: 88 TQNALISL-PELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTXLPELPALLEYIN 146
Query: 66 SQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGA----TNSQGAIPSL 113
+ + PELP + + + PELP A TN ++P++
Sbjct: 147 ADNNQLTXLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAV 198
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 71/197 (36%), Gaps = 30/197 (15%)
Query: 8 GAIPSLKPELPNQAGATNSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQ 67
++P L P L + + NS LP L L + N+ A+ L P L G +N+Q
Sbjct: 84 SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL-EYLGVSNNQ 142
Query: 68 GAIPSLKPELPNQAGA------TNSQGAIPSLKPELPNQAGATNSQGAIPSLK--PELPN 119
PEL N + NS +P L P L A N +P L+ P L
Sbjct: 143 LEK---LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTA 199
Query: 120 QAGATNSQGALPGLKPELPNQARATNSQGAIPSLK------------------PELPNQA 161
NS LP L L + N +P L+ P+LP
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSL 259
Query: 162 RATNSQGAIPSLRPELP 178
A N + + PELP
Sbjct: 260 EALNVRDNYLTDLPELP 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.297 0.118 0.325
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,805,989
Number of Sequences: 62578
Number of extensions: 765674
Number of successful extensions: 737
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 99
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 53 (25.0 bits)