Query psy9103
Match_columns 451
No_of_seqs 36 out of 38
Neff 1.8
Searched_HMMs 46136
Date Fri Aug 16 18:58:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13042 superantigen-like pro 7.4 7.4E+02 0.016 25.5 4.9 7 264-270 87-93 (291)
2 PF06567 Neural_ProG_Cyt: Neur 5.1 6E+02 0.013 23.3 2.5 23 80-102 83-105 (120)
3 PF06567 Neural_ProG_Cyt: Neur 4.7 6.6E+02 0.014 23.0 2.5 50 77-127 61-110 (120)
4 PRK13335 superantigen-like pro 4.6 1.7E+03 0.038 23.6 5.8 27 381-410 132-158 (356)
5 PF03109 ABC1: ABC1 family; I 3.8 3.2E+02 0.007 23.0 -0.1 20 125-144 35-54 (119)
6 COG4570 Rus Holliday junction 3.0 4.3E+02 0.0092 24.4 -0.1 13 70-82 77-89 (132)
7 KOG3465|consensus 2.6 5.1E+02 0.011 22.6 -0.1 10 1-10 29-38 (86)
8 PRK13658 hypothetical protein; 2.4 2.9E+02 0.0063 22.6 -1.7 17 130-146 32-48 (59)
9 cd00949 FBP_aldolase_I_bact Fr 2.0 3.8E+02 0.0083 27.5 -1.9 53 126-180 166-220 (292)
10 KOG2945|consensus 2.0 7.4E+02 0.016 26.1 0.0 74 40-113 224-305 (365)
No 1
>PRK13042 superantigen-like protein; Reviewed
Probab=7.44 E-value=7.4e+02 Score=25.51 Aligned_cols=7 Identities=71% Similarity=0.876 Sum_probs=3.8
Q ss_pred CCCCccC
Q psy9103 264 PQTGTTK 270 (451)
Q Consensus 264 pqsgttp 270 (451)
|||-||+
T Consensus 87 pq~~~~~ 93 (291)
T PRK13042 87 PQSPTTK 93 (291)
T ss_pred CCCCchh
Confidence 5555554
No 2
>PF06567 Neural_ProG_Cyt: Neural chondroitin sulphate proteoglycan cytoplasmic domain; InterPro: IPR009505 This entry represents the C-terminal cytoplasmic domain of vertebrate neural chondroitin sulphate proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis []. This domain contains a number of potential sites of phosphorylation by protein kinase C [].
Probab=5.08 E-value=6e+02 Score=23.26 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=11.8
Q ss_pred cccCCCCCCcccccCCCCccccc
Q psy9103 80 QAGATNSQGAIPSLKPELPNQAG 102 (451)
Q Consensus 80 mikk~dSe~~l~ivKpel~Nmi~ 102 (451)
.+|.++|-.|+.++-|.+-|--+
T Consensus 83 ~~KEEes~NI~NS~sPK~E~~kg 105 (120)
T PF06567_consen 83 CLKEEESFNIQNSMSPKLENNKG 105 (120)
T ss_pred cccccccccccccCCccccCCCC
Confidence 44555555555555555554333
No 3
>PF06567 Neural_ProG_Cyt: Neural chondroitin sulphate proteoglycan cytoplasmic domain; InterPro: IPR009505 This entry represents the C-terminal cytoplasmic domain of vertebrate neural chondroitin sulphate proteoglycans that contain EGF modules. Evidence has been accumulated to support the idea that neural proteoglycans are involved in various cellular events including mitogenesis, differentiation, axonal outgrowth and synaptogenesis []. This domain contains a number of potential sites of phosphorylation by protein kinase C [].
Probab=4.71 E-value=6.6e+02 Score=23.00 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=28.2
Q ss_pred CcccccCCCCCCcccccCCCCcccccCCCCCCcccccCCCCcccccCCCCC
Q psy9103 77 LPNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQ 127 (451)
Q Consensus 77 l~Nmikk~dSe~~l~ivKpel~Nmi~kddSe~~lkivKPEL~Nmi~kd~Se 127 (451)
++|.|-.||+..--++--|-- -.+|.++|-.++.++-|++-|--+..+..
T Consensus 61 ydniicqDdp~~~hk~qdp~K-~~~KEEes~NI~NS~sPK~E~~kg~~~~~ 110 (120)
T PF06567_consen 61 YDNIICQDDPSAPHKIQDPLK-SCLKEEESFNIQNSMSPKLENNKGDQADL 110 (120)
T ss_pred hcCCcccCCCccchhhhhhcc-ccccccccccccccCCccccCCCCCcccc
Confidence 345555555543222211111 26677888888888888877755554443
No 4
>PRK13335 superantigen-like protein; Reviewed
Probab=4.61 E-value=1.7e+03 Score=23.57 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=13.6
Q ss_pred cccCCCCCCCCCCCCcCcCCcccCCCCCCC
Q psy9103 381 YTEPQTGTTKSGKNYKQSGSYTEPQTGTTK 410 (451)
Q Consensus 381 ITTPQsgTtPspaNpiESKPITTpQsgTtP 410 (451)
.+||++.++|. ||++---.+||+.|+.
T Consensus 132 ~tTpps~~t~~---~~~~~~~~~p~s~t~k 158 (356)
T PRK13335 132 VTTPPSTNTPQ---PMQSTKSDTPQSPTIK 158 (356)
T ss_pred CCCCCCCCCCC---CccccccCCCCCcccc
Confidence 44554444433 2444444556666655
No 5
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=3.75 E-value=3.2e+02 Score=22.95 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=9.7
Q ss_pred CCCCccCccCCccchhhhcc
Q psy9103 125 NSQGALPGLKPELPNQARAT 144 (451)
Q Consensus 125 ~Se~vlkivkpel~Nmikkd 144 (451)
..+-|+|+.+|++..+++.|
T Consensus 35 g~~VaVKV~rP~i~~~i~~D 54 (119)
T PF03109_consen 35 GEEVAVKVQRPGIEEQIEAD 54 (119)
T ss_pred cchhhhhhcchHHHHHHHHH
Confidence 34445555555555544443
No 6
>COG4570 Rus Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=2.99 E-value=4.3e+02 Score=24.38 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=7.6
Q ss_pred ccccCCCCccccc
Q psy9103 70 IPSLKPELPNQAG 82 (451)
Q Consensus 70 lk~vKpel~Nmik 82 (451)
.|..||.|+|++|
T Consensus 77 ~kttrpDlDNl~K 89 (132)
T COG4570 77 YKTTRPDLDNLLK 89 (132)
T ss_pred ccccCccHHHHHH
Confidence 5556666666554
No 7
>KOG3465|consensus
Probab=2.55 E-value=5.1e+02 Score=22.61 Aligned_cols=10 Identities=60% Similarity=1.056 Sum_probs=6.5
Q ss_pred CcccccCCCC
Q psy9103 1 MKIRHSQGAI 10 (451)
Q Consensus 1 ~~~~~~~~~~ 10 (451)
||.||+.|.+
T Consensus 29 mKYrh~~g~l 38 (86)
T KOG3465|consen 29 MKYRHSKGSL 38 (86)
T ss_pred EEEecCCCcE
Confidence 5667777654
No 8
>PRK13658 hypothetical protein; Provisional
Probab=2.36 E-value=2.9e+02 Score=22.64 Aligned_cols=17 Identities=41% Similarity=0.364 Sum_probs=7.9
Q ss_pred cCccCCccchhhhccCC
Q psy9103 130 LPGLKPELPNQARATNS 146 (451)
Q Consensus 130 lkivkpel~Nmikkd~S 146 (451)
|.|||.||-.+.+.+.+
T Consensus 32 LEILKaELL~~~~~~~~ 48 (59)
T PRK13658 32 LEILKAELLRQVAESTS 48 (59)
T ss_pred HHHHHHHHHHHhhcccC
Confidence 34455555554444443
No 9
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=2.00 E-value=3.8e+02 Score=27.48 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCccCccCCccchhhhccCCCCcccccCCcchhhhhhc--CCCCCccccCCCCCcc
Q psy9103 126 SQGALPGLKPELPNQARATNSQGAIPSLKPELPNQARAT--NSQGAIPSLRPELPNQ 180 (451)
Q Consensus 126 Se~vlkivkpel~Nmikkd~Se~~i~~vkpeL~Nmirk~--~s~~~~~~~~pel~n~ 180 (451)
..+.+|||.||. .|...|-+.+-.+||-||-..+.+- +.+-+||.--|+-.|.
T Consensus 166 ~~GLVPIVEPEV--li~~~~k~~~e~~l~~~i~~~l~~l~~~~~vmlkltlp~~~~~ 220 (292)
T cd00949 166 SHGLVPIIEPEV--DIHSADKAKCEAILKAEILKHLDKLPEGQQVMLKLTLPTEANF 220 (292)
T ss_pred HcCCCceECceE--CCCCccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCCcCh
No 10
>KOG2945|consensus
Probab=1.98 E-value=7.4e+02 Score=26.07 Aligned_cols=74 Identities=12% Similarity=-0.043 Sum_probs=0.0
Q ss_pred cccccCCCCccccCCCCC-cccccCCCCCCcccccCCCCcccccCCCCCCcccccCCCCccccc-------CCCCCCccc
Q psy9103 40 QARTTNSQGAIPSLKPEL-PNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAG-------ATNSQGAIP 111 (451)
Q Consensus 40 mikk~dSe~~i~~vKPeL-~Nmi~k~dSe~~lk~vKpel~Nmikk~dSe~~l~ivKpel~Nmi~-------kddSe~~lk 111 (451)
+++....|.+.++++.++ .++..+..-+.+..++.-|+-|.-.++-.---+.|.+++-----+ |++-+.+..
T Consensus 224 ~~~~~~~ee~e~~~ee~~k~~~~~a~~e~~~~~~tlde~k~l~~k~~~~~e~nik~~~~~~~~~~~v~~~~k~~e~~~~~ 303 (365)
T KOG2945|consen 224 EAKEMPVEEVEKLAEEEKKALQAEAVEEEKVKEMTLDEMKALSNKDIPPFENNIKAGEGKDTRKTVVLHSSKDREEKSED 303 (365)
T ss_pred cccCCcccccccccccccccchhhhhhhhhhhhhhhhHHHHHhhcccCchhhhhhcccccccccceeeeccccccchhhh
Q ss_pred cc
Q psy9103 112 SL 113 (451)
Q Consensus 112 iv 113 (451)
+|
T Consensus 304 ~~ 305 (365)
T KOG2945|consen 304 SL 305 (365)
T ss_pred hh
Done!