Query psy9103
Match_columns 451
No_of_seqs 36 out of 38
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 18:59:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sjl_C Methylamine dehydrogena 1.7 8.5E+02 0.029 21.5 1.2 18 165-182 90-107 (137)
2 3c75_L Methylamine dehydrogena 1.5 9.9E+02 0.034 22.0 1.2 18 165-182 147-164 (188)
3 3e4c_A Caspase-1; zymogen, inf 1.2 5.5E+02 0.019 23.8 -1.3 50 6-55 2-56 (302)
4 2oiz_D Aromatic amine dehydrog 1.1 1.2E+03 0.042 20.5 0.9 18 165-182 95-112 (135)
5 1fli_A FLI-1; transcription/DN 1.1 1.2E+03 0.042 19.1 0.8 10 126-135 30-39 (98)
6 2jm3_A Hypothetical protein; z 1.0 2.3E+03 0.077 16.5 2.0 20 164-183 67-86 (91)
7 1tex_A STF0 sulfotransferase; 0.8 1.5E+03 0.05 20.2 0.3 40 185-224 10-54 (287)
8 3q9p_A Heat shock protein beta 0.8 1.9E+03 0.066 16.0 0.9 8 29-36 14-21 (85)
9 3e7n_A D-ribose high-affinity 0.7 1.5E+03 0.051 18.9 0.1 9 111-119 8-16 (142)
10 2h8e_A Crossover junction endo 0.7 1.3E+03 0.045 18.0 -0.3 9 34-42 68-76 (120)
No 1
>3sjl_C Methylamine dehydrogenase light chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3l4o_C* 3l4m_C* 3pxs_C* 3pxt_C* 3pxw_C* 3rlm_C* 3orv_C* 3rn0_C* 3rn1_C* 3rmz_C* 3sle_C* 3svw_C* 3sws_C* 3sxt_C* 2gc4_B* 1mg3_B* 1mg2_B* 2gc7_B* 2j55_L* 2j56_L* ...
Probab=1.72 E-value=8.5e+02 Score=21.52 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=14.9
Q ss_pred CCCCCccccCCCCCcccc
Q psy9103 165 NSQGAIPSLRPELPNQAG 182 (451)
Q Consensus 165 ~s~~~~~~~~pel~n~~~ 182 (451)
+.|+-.|..||+++|-|-
T Consensus 90 ~~ege~P~Yrp~~~NDI~ 107 (137)
T 3sjl_C 90 NTEGELPVYRPEFANDII 107 (137)
T ss_dssp CCTTCCCTTSGGGCCSBC
T ss_pred CCcccCcccccCcCCcee
Confidence 567888999999999764
No 2
>3c75_L Methylamine dehydrogenase light chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=1.48 E-value=9.9e+02 Score=22.02 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=11.6
Q ss_pred CCCCCccccCCCCCcccc
Q psy9103 165 NSQGAIPSLRPELPNQAG 182 (451)
Q Consensus 165 ~s~~~~~~~~pel~n~~~ 182 (451)
+.|+-.|..||+++|-|-
T Consensus 147 ~~e~e~P~Yrp~~~NDi~ 164 (188)
T 3c75_L 147 NTEGELPVYRPEFANDII 164 (188)
T ss_dssp CCTTCCCTTSGGGCCSBC
T ss_pred CCccCCcccccCCCCcee
Confidence 456667777777777553
No 3
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=1.19 E-value=5.5e+02 Score=23.84 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=21.7
Q ss_pred cCCCCCCCCCCCCCccCC-----CCCCCCCCCCCCCCcccccccCCCCccccCCC
Q psy9103 6 SQGAIPSLKPELPNQAGA-----TNSQGALPGLKPELPNQARTTNSQGAIPSLKP 55 (451)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-----~~s~~~l~~~kpel~Nmikk~dSe~~i~~vKP 55 (451)
+||++|++-...-+++|. ..+.+.|+--.+|.-..+++.+.+.+.+|-.-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~Y~m~~~ 56 (302)
T 3e4c_A 2 SQGVLSSFPAPQAVQDNPAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDK 56 (302)
T ss_dssp ----------------------CCCTTTTSCCCCHHHHHHHHHHHGGGBCCCCCT
T ss_pred CccccCCCCCchhhccCCccccccCCCCccccCCHHHHHHHHHhccccccccCCC
Confidence 677777776655555554 33455677777787778888777777766543
No 4
>2oiz_D Aromatic amine dehydrogenase, small subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_D* 2agx_D* 2agl_D* 2agz_D* 2ah0_D* 2ah1_D* 2h3x_B* 2h47_B* 2hj4_D* 2hjb_D* 2hkm_D* 2hxc_D* 2iaa_B* 2iup_D* 2iuq_D* 2iur_D* 2iuv_D* 2agy_D* 2ok4_D* 2ok6_D* ...
Probab=1.12 E-value=1.2e+03 Score=20.46 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.3
Q ss_pred CCCCCccccCCCCCcccc
Q psy9103 165 NSQGAIPSLRPELPNQAG 182 (451)
Q Consensus 165 ~s~~~~~~~~pel~n~~~ 182 (451)
+.|+-.|..||+++|-|-
T Consensus 95 ~~e~e~P~Yrp~~~NDI~ 112 (135)
T 2oiz_D 95 TQTRERPGYEFFLHNDVN 112 (135)
T ss_dssp CCTTCCCGGGGGGCCSBC
T ss_pred CCccCCcccccCCCCcee
Confidence 567888889999988764
No 5
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=1.12 E-value=1.2e+03 Score=19.09 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=4.0
Q ss_pred CCCccCccCC
Q psy9103 126 SQGALPGLKP 135 (451)
Q Consensus 126 Se~vlkivkp 135 (451)
.+++.++|+|
T Consensus 30 ~~g~Fklvd~ 39 (98)
T 1fli_A 30 TNGEFKMTDP 39 (98)
T ss_dssp SSSSCEECCH
T ss_pred CCCEEEEcCH
Confidence 3344444443
No 6
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}
Probab=0.98 E-value=2.3e+03 Score=16.48 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=14.0
Q ss_pred cCCCCCccccCCCCCccccc
Q psy9103 164 TNSQGAIPSLRPELPNQAGA 183 (451)
Q Consensus 164 ~~s~~~~~~~~pel~n~~~~ 183 (451)
+-++++||+.+|-|--.||.
T Consensus 67 ~~~~~~ip~~~p~~~~~~~~ 86 (91)
T 2jm3_A 67 EKKEGDIPVPDPTVDKQIKI 86 (91)
T ss_dssp CCSSSBCCCSCTTTSCCCBC
T ss_pred CcccCcCCCCCccccccccc
Confidence 45778888888877666553
No 7
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium smegmatis} SCOP: c.37.1.5
Probab=0.81 E-value=1.5e+03 Score=20.22 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=15.7
Q ss_pred CCCCCCCcccccccCC-----ccCCCcccccCCCCccccCCcccC
Q psy9103 185 NSQGAIPSLSRLISGS-----YTEPQTGTTKSGKNYKQSGSYTEP 224 (451)
Q Consensus 185 ~~~~~~~~~~~~~s~~-----~t~pq~gtt~~~~n~~qs~~~t~P 224 (451)
.|.|.+|+...|.... +..|-||||-+...-...+.+..|
T Consensus 10 ~~~~~~~~~~~m~~~~~~ffIvG~pRSGSTlLe~~L~sh~~~g~p 54 (287)
T 1tex_A 10 HSSGLVPRGSHMSDHPTAYLVLASQRSGSTLLVESLRATGVAGEP 54 (287)
T ss_dssp -------------CCCCEEEEEECTTSTHHHHHHHHHHHTSSCCC
T ss_pred ccCccccChhhcCCCCCeEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 4567788888886542 467888888776555544333333
No 8
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=0.78 E-value=1.9e+03 Score=15.97 Aligned_cols=8 Identities=13% Similarity=0.463 Sum_probs=5.5
Q ss_pred CCCCCCCC
Q psy9103 29 ALPGLKPE 36 (451)
Q Consensus 29 ~l~~~kpe 36 (451)
.|||+++|
T Consensus 14 dlPG~~~e 21 (85)
T 3q9p_A 14 DVNHFAPD 21 (85)
T ss_dssp ECTTTCCS
T ss_pred ECCCCChH
Confidence 46777776
No 9
>3e7n_A D-ribose high-affinity transport system; D-ribose transport system, RBSD,csgid, structural genomics; 2.45A {Salmonella typhimurium}
Probab=0.73 E-value=1.5e+03 Score=18.93 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=3.8
Q ss_pred cccCCCCcc
Q psy9103 111 PSLKPELPN 119 (451)
Q Consensus 111 kivKPEL~N 119 (451)
.|+-|||..
T Consensus 8 ~iLnpeLl~ 16 (142)
T 3e7n_A 8 TVLNSEISS 16 (142)
T ss_dssp SCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 344444443
No 10
>2h8e_A Crossover junction endodeoxyribonuclease RUSA; homologous recombination, DNA repair, resolvase, hydrolase; 1.20A {Escherichia coli} PDB: 2h8c_A 1q8r_A
Probab=0.73 E-value=1.3e+03 Score=18.03 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCCCccccc
Q psy9103 34 KPELPNQAR 42 (451)
Q Consensus 34 kpel~Nmik 42 (451)
||+++|.+|
T Consensus 68 k~D~DN~~K 76 (120)
T 2h8e_A 68 RRNLDNLQK 76 (120)
T ss_dssp CCCTHHHHH
T ss_pred CCCccchHH
Done!