Query psy9103
Match_columns 451
No_of_seqs 36 out of 38
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 18:59:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9103.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9103hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hyma2 b.1.2.1 (A:110-212) In 2.1 1.8E+02 0.013 22.6 -0.2 25 160-184 32-57 (103)
2 d1vkda_ b.67.2.4 (A:) Hypothet 1.8 6.8E+02 0.049 20.8 3.1 59 130-199 2-66 (327)
3 d1eija_ a.5.6.1 (A:) Hypotheti 1.8 1.8E+02 0.013 21.1 -0.8 12 130-141 28-39 (72)
4 d1914a1 d.49.1.1 (A:4004-4081) 1.4 2.7E+02 0.02 20.6 -0.6 8 2-9 27-34 (78)
5 d1huxa_ c.55.1.5 (A:) Hydroxyg 1.2 3.3E+02 0.024 19.9 -0.4 14 170-183 233-246 (259)
6 d1ls1a1 a.24.13.1 (A:1-88) Sig 1.0 1.5E+02 0.011 21.6 -3.0 9 150-158 75-83 (88)
7 d1gz0a2 d.79.3.3 (A:2-77) RlmB 0.8 4.5E+02 0.033 17.1 -0.7 22 54-75 54-75 (76)
8 d1awca_ a.4.5.21 (A:) GA bindi 0.8 6.5E+02 0.048 19.2 0.2 9 127-135 26-34 (110)
9 d1flia_ a.4.5.21 (A:) Fli-1 {H 0.8 8.6E+02 0.063 18.1 0.8 16 121-136 25-40 (98)
10 d1texa_ c.37.1.5 (A:) Stf0 sul 0.8 6.1E+02 0.044 17.4 -0.1 9 241-249 9-17 (265)
No 1
>d2hyma2 b.1.2.1 (A:110-212) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.12 E-value=1.8e+02 Score=22.63 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=18.2
Q ss_pred hhhhcCCCCCccccCCCCC-cccccc
Q psy9103 160 QARATNSQGAIPSLRPELP-NQAGAT 184 (451)
Q Consensus 160 mirk~~s~~~~~~~~pel~-n~~~~~ 184 (451)
.|..+.++++++--+||++ |+-|.-
T Consensus 32 ~iiEe~s~~ivkkH~P~i~~N~TgNF 57 (103)
T d2hyma2 32 LVIEEQSEGIVKKHKPEIKGNMSGNF 57 (103)
T ss_dssp EEEEEEETTEEEEECCCCTTTSSSEE
T ss_pred EEeeecccchhhhcCccccCccccce
Confidence 4556677888888888888 777743
No 2
>d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]}
Probab=1.85 E-value=6.8e+02 Score=20.77 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=32.2
Q ss_pred cCccCCccchhhhccCCCCcccccCCcchhhhhhcCCCCCccccCCCCCcc------ccccCCCCCCCcccccccC
Q psy9103 130 LPGLKPELPNQARATNSQGAIPSLKPELPNQARATNSQGAIPSLRPELPNQ------AGATNSQGAIPSLSRLISG 199 (451)
Q Consensus 130 lkivkpel~Nmikkd~Se~~i~~vkpeL~Nmirk~~s~~~~~~~~pel~n~------~~~~~~~~~~~~~~~~~s~ 199 (451)
|||+-++|+||-=+|..+....+|...=. -|+|+|.--.- .||.--.|.+=-|-|.+..
T Consensus 2 ~~~~~~~~~~~pw~~rp~~~~~~~~R~~~-----------NPil~~~~~~~~~~vfNp~~i~~~g~~~ll~r~~~~ 66 (327)
T d1vkda_ 2 MKVFTEKIPNIPWEERPEGYTGPVWRYSK-----------NPIIGRNPVPKGARVFNSAVVPYNGEFVGVFRIDHK 66 (327)
T ss_dssp CCBCSCCCTTCCCCCCCTTCCSSEEECTT-----------CCSBCBSCSTTEEEEEEEEEEEETTEEEEEEEEEET
T ss_pred ceEecCCCCCCCcccCcccCCCCceecCC-----------CccccCCCCcchhceeccEEEEECCEEEEEEEecCC
Confidence 57777777777777666655555433222 27777653221 2334444555556665543
No 3
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=1.80 E-value=1.8e+02 Score=21.11 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=6.3
Q ss_pred cCccCCccchhh
Q psy9103 130 LPGLKPELPNQA 141 (451)
Q Consensus 130 lkivkpel~Nmi 141 (451)
++.||||...+|
T Consensus 28 i~lvkPekA~~v 39 (72)
T d1eija_ 28 LRLTRPDFVEQI 39 (72)
T ss_dssp HTTTCHHHHHHH
T ss_pred hhhcCHHHHHHH
Confidence 345555555544
No 4
>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.36 E-value=2.7e+02 Score=20.56 Aligned_cols=8 Identities=50% Similarity=0.808 Sum_probs=3.4
Q ss_pred cccccCCC
Q psy9103 2 KIRHSQGA 9 (451)
Q Consensus 2 ~~~~~~~~ 9 (451)
|.||+.|.
T Consensus 27 Kyrh~~g~ 34 (78)
T d1914a1 27 KYRHVDGN 34 (78)
T ss_dssp EEETTTTE
T ss_pred EEEcCCCe
Confidence 34444443
No 5
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}
Probab=1.21 E-value=3.3e+02 Score=19.89 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.2
Q ss_pred ccccCCCCCccccc
Q psy9103 170 IPSLRPELPNQAGA 183 (451)
Q Consensus 170 ~~~~~pel~n~~~~ 183 (451)
+++++|+|++.+||
T Consensus 233 ~~i~~~~~~~~aga 246 (259)
T d1huxa_ 233 VEIKTSPLAQYNGA 246 (259)
T ss_dssp SCEECCGGGGGHHH
T ss_pred CCEEcCCCccHHHH
Confidence 56899999988764
No 6
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=0.98 E-value=1.5e+02 Score=21.62 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.5
Q ss_pred ccccCCcch
Q psy9103 150 IPSLKPELP 158 (451)
Q Consensus 150 i~~vkpeL~ 158 (451)
+++|..||-
T Consensus 75 ikiV~dELv 83 (88)
T d1ls1a1 75 LATVYEALK 83 (88)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333433333
No 7
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=0.82 E-value=4.5e+02 Score=17.14 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=11.9
Q ss_pred CCCCcccccCCCCCCcccccCC
Q psy9103 54 KPELPNQAGATNSQGAIPSLKP 75 (451)
Q Consensus 54 KPeL~Nmi~k~dSe~~lk~vKp 75 (451)
+-+|+.+.+..+-|+|+--++|
T Consensus 54 ~~~Ld~l~~~~~HQGVva~v~P 75 (76)
T d1gz0a2 54 RQYLDEKSDGAVHQGIIARVKP 75 (76)
T ss_dssp SHHHHHTTTSCCCTTEEEEECC
T ss_pred HHHHHHhcCCCCCCeEEEEEeC
Confidence 3455555555555666555544
No 8
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=0.81 E-value=6.5e+02 Score=19.22 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.6
Q ss_pred CCccCccCC
Q psy9103 127 QGALPGLKP 135 (451)
Q Consensus 127 e~vlkivkp 135 (451)
+++.++|.|
T Consensus 26 ~geFkl~d~ 34 (110)
T d1awca_ 26 EGEFKLNQP 34 (110)
T ss_dssp SSEEECSSH
T ss_pred CCEEEeCCH
Confidence 334444433
No 9
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.79 E-value=8.6e+02 Score=18.06 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=6.7
Q ss_pred ccCCCCCCccCccCCc
Q psy9103 121 AGATNSQGALPGLKPE 136 (451)
Q Consensus 121 i~kd~Se~vlkivkpe 136 (451)
|+=++.+++.++|.+|
T Consensus 25 I~W~~~~geFkl~~~~ 40 (98)
T d1flia_ 25 ITWEGTNGEFKMTDPD 40 (98)
T ss_dssp EECTTSSSSCEECCHH
T ss_pred eEEECCCCEEEeCCHH
Confidence 3334444444444443
No 10
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium smegmatis [TaxId: 1772]}
Probab=0.78 E-value=6.1e+02 Score=17.35 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=0.0
Q ss_pred cccCCCCcc
Q psy9103 241 YTEPQTGTT 249 (451)
Q Consensus 241 ~t~pqsgtt 249 (451)
+..|-||||
T Consensus 9 ~g~pRSGTT 17 (265)
T d1texa_ 9 LASQRSGST 17 (265)
T ss_dssp EECTTSTHH
T ss_pred ECCCCChHH
Done!