RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9103
(451 letters)
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 51.7 bits (123), Expect = 6e-07
Identities = 47/185 (25%), Positives = 78/185 (42%)
Query: 9 AIPSLKPELPNQAGATNSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQG 68
++P+L PEL + N +LP L P L + +N +P+L L N
Sbjct: 236 SLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 295
Query: 69 AIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQG 128
++P L P L + + N ++P+L EL N ++P+L L + + N
Sbjct: 296 SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA 355
Query: 129 ALPGLKPELPNQARATNSQGAIPSLKPELPNQARATNSQGAIPSLRPELPNQAGATNSQG 188
+LP L EL N ++P+L L + N ++P L EL + N
Sbjct: 356 SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT 415
Query: 189 AIPSL 193
++P L
Sbjct: 416 SLPML 420
Score = 48.2 bits (114), Expect = 7e-06
Identities = 43/169 (25%), Positives = 71/169 (42%)
Query: 25 NSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGAT 84
N+ +LP L PEL + N ++P L P L + +N +P+L L
Sbjct: 232 NNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 291
Query: 85 NSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGALPGLKPELPNQARAT 144
N ++P L P L + + N ++P+L EL N +LP L L + +
Sbjct: 292 NQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD 351
Query: 145 NSQGAIPSLKPELPNQARATNSQGAIPSLRPELPNQAGATNSQGAIPSL 193
N ++P+L EL N ++P+L L + N ++P L
Sbjct: 352 NQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL 400
Score = 40.9 bits (95), Expect = 0.001
Identities = 36/147 (24%), Positives = 61/147 (41%)
Query: 25 NSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGAT 84
N +LP L P L + + N ++P+L EL N ++P+L L + +
Sbjct: 292 NQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD 351
Query: 85 NSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGALPGLKPELPNQARAT 144
N ++P+L EL N ++P+L L + N +LP L EL +
Sbjct: 352 NQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSG 411
Query: 145 NSQGAIPSLKPELPNQARATNSQGAIP 171
N ++P L L + + N +P
Sbjct: 412 NRLTSLPMLPSGLLSLSVYRNQLTRLP 438
Score = 39.8 bits (92), Expect = 0.003
Identities = 35/143 (24%), Positives = 59/143 (41%)
Query: 9 AIPSLKPELPNQAGATNSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQG 68
++P L P L + + N +LP L EL N ++P+L L + + N
Sbjct: 296 SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA 355
Query: 69 AIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQG 128
++P+L EL N ++P+L L + N ++P L EL + N
Sbjct: 356 SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT 415
Query: 129 ALPGLKPELPNQARATNSQGAIP 151
+LP L L + + N +P
Sbjct: 416 SLPMLPSGLLSLSVYRNQLTRLP 438
Score = 33.2 bits (75), Expect = 0.34
Identities = 30/124 (24%), Positives = 50/124 (40%)
Query: 8 GAIPSLKPELPNQAGATNSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQ 67
++P+L EL N +LP L L + + N ++P+L EL N
Sbjct: 315 ASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRL 374
Query: 68 GAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQ 127
++P+L L + N ++P L EL + N ++P L L + + N
Sbjct: 375 TSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQL 434
Query: 128 GALP 131
LP
Sbjct: 435 TRLP 438
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 32.0 bits (72), Expect = 0.71
Identities = 22/100 (22%), Positives = 30/100 (30%), Gaps = 1/100 (1%)
Query: 31 PGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAI 90
P ++P Q Q +P P Q P + + P Q A Q
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 91 PSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAL 130
P +P P Q P + + P Q A Q L
Sbjct: 807 PQ-QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTL 845
Score = 30.1 bits (67), Expect = 2.9
Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 1/97 (1%)
Query: 71 PSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAL 130
P ++P Q Q +P P Q P + + P Q A Q
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 131 PGLKPELPNQARATNSQGAIPSLKPELPNQARATNSQ 167
P +P P Q P + + P Q A Q
Sbjct: 807 PQ-QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ 842
Score = 29.7 bits (66), Expect = 3.9
Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 1/97 (1%)
Query: 11 PSLKPELPNQAGATNSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQAGATNSQGAI 70
P ++P Q Q +P P Q P + + P Q A Q
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 71 PSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQ 107
P +P P Q P + + P Q A Q
Sbjct: 807 PQ-QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ 842
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 31.7 bits (72), Expect = 1.0
Identities = 30/185 (16%), Positives = 43/185 (23%), Gaps = 9/185 (4%)
Query: 11 PSLKPELPNQAGATNSQGALPGLKP----ELPNQARTTNSQGAIPSLKPELPNQAGATNS 66
P QA + Q P K E+ Q + +P ++ Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 67 QGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNS 126
PE P + +Q +P P+ P
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQF 248
Query: 127 QGALPGLKPE---LPNQARATNSQGAIPSLKPELPNQARATNSQGAIPSLRPELPNQAGA 183
G + P P Q + A P P+ QG L P Q
Sbjct: 249 PGLSQQMPPPPPQPPQQQQQPPQPQAQPP--PQNQPTPHPGLPQGQNAPLPPPQQPQLLP 306
Query: 184 TNSQG 188
Q
Sbjct: 307 LVQQP 311
Score = 29.7 bits (67), Expect = 3.8
Identities = 31/180 (17%), Positives = 43/180 (23%), Gaps = 19/180 (10%)
Query: 1 MKIRHSQGAIPSLKPELPNQAGATNSQGALPGLKPELPNQARTTNSQGAIPSLKPELPNQ 60
++ R +P ++ Q PE P +
Sbjct: 163 LQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPA 222
Query: 61 AGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGAIPSLKPELPNQ 120
+Q +P P+LP Q Q P L ++P Q P P
Sbjct: 223 PSQAPAQPPLP---PQLPQQPPP-LQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPP- 277
Query: 121 AGATNSQGALPGLKPELPNQARATNSQGAIPSLKPELPNQARATNSQGAIPSLRPELPNQ 180
N PGL QG L P Q Q P+ Q
Sbjct: 278 --PQNQPTPHPGL------------PQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQ 323
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 30.2 bits (68), Expect = 2.6
Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 33 LKPELPNQARTTNSQGAIPSLKPELPNQAGATN--SQGAIPSLKPELPNQAGATNSQGAI 90
L + R S P P N++G N S + S+K PN S+G +
Sbjct: 361 LAKQPATPTRGVESPARSPGGSPRTTNRSGPRNVASVSPMTSVKKIDPNMKPGAASEGVL 420
Query: 91 P----SLKPELPNQAGATNSQGAIPSLKPELPNQAGATNSQGALPGLKPELPNQARATNS 146
SL + G+ G+ A + + L ++ EL +R +
Sbjct: 421 ANFFNSLLSKKTGSPGSPGGGGSPAGTGTNTQGTAKKSGQKPVLTDVQAELDRMSRKPDK 480
Query: 147 QGAIPSLKP 155
S
Sbjct: 481 DLDPNSQTE 489
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.297 0.118 0.325
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,856,488
Number of extensions: 1838481
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 71
Length of query: 451
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 351
Effective length of database: 6,502,202
Effective search space: 2282272902
Effective search space used: 2282272902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 61 (27.5 bits)