RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9103
         (451 letters)



>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein;
           choline-binding protein, PCE, phosphorylcholine estera
           hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae}
           SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
          Length = 547

 Score = 35.4 bits (81), Expect = 0.037
 Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 6/122 (4%)

Query: 330 KSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTT 389
           K   ++  + S T+       S     Q+      + G      N+ +            
Sbjct: 225 KFNHHHDTNKSNTKDFIKNL-SPSLIVQTSDSLPWKNGVDSEYVNWLKERGIE-----RI 278

Query: 390 KSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGWF 449
            +      +  +   + G      +YK   S+      +      Y+   S  E   GW 
Sbjct: 279 NAASKDYDATVFDIRKDGFVNISTSYKPIPSFQAGWHKSAYGNWWYQAPDSTGEYAVGWN 338

Query: 450 KI 451
           +I
Sbjct: 339 EI 340


>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S;
           oxidoreductase, selenium, selenocysteine, seCys,
           molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli}
           SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
          Length = 1015

 Score = 28.7 bits (64), Expect = 4.8
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 390 KSGKNYKQSGSYTEPQT-GTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGW 448
              K  +   S+   +  GTT S   +  +GS+TE          N   SG        W
Sbjct: 712 LIAKKGQLLSSFAHLRDDGTTASS-CWIYTGSWTEQGNQMAN-RDNSDPSGLGNTLGWAW 769


>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase,
           glycosidase, choline-binding protein; 1.61A
           {Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
          Length = 468

 Score = 27.7 bits (61), Expect = 8.5
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 397 QSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSY------TEPQTGWFK 450
           ++      Q  TT S  + +   S     +   ++       G Y      ++ Q+ W  
Sbjct: 2   ETEVAKTSQDTTTASSSSEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDDGSKAQSEWIF 61

Query: 451 I 451
            
Sbjct: 62  D 62


>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli}
           SCOP: f.4.3.1
          Length = 330

 Score = 27.6 bits (61), Expect = 9.4
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 2/124 (1%)

Query: 200 SYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKN-YKQSGSYTEPQTGTTKSGKNYKQS 258
           +Y          G N               K   + +  S +Y    +    SG  Y  S
Sbjct: 132 TYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISG-AYTNS 190

Query: 259 GSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQS 318
               E    +  +GK  +   +  +           Y ++   T    G     +N++  
Sbjct: 191 DRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAV 250

Query: 319 GSYT 322
             Y 
Sbjct: 251 AQYQ 254



 Score = 27.6 bits (61), Expect = 9.4
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 2/124 (1%)

Query: 220 SYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKN-YKQSGSYTEPQTGTTKSGKNYKQS 278
           +Y          G N               K   + +  S +Y    +    SG  Y  S
Sbjct: 132 TYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISG-AYTNS 190

Query: 279 GSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQS 338
               E    +  +GK  +   +  +           Y ++   T    G     +N++  
Sbjct: 191 DRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAV 250

Query: 339 GSYT 342
             Y 
Sbjct: 251 AQYQ 254



 Score = 27.6 bits (61), Expect = 9.4
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 2/124 (1%)

Query: 240 SYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKN-YKQSGSYTEPQTGTTKSGKNYKQS 298
           +Y          G N               K   + +  S +Y    +    SG  Y  S
Sbjct: 132 TYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISG-AYTNS 190

Query: 299 GSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQS 358
               E    +  +GK  +   +  +           Y ++   T    G     +N++  
Sbjct: 191 DRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAV 250

Query: 359 GSYT 362
             Y 
Sbjct: 251 AQYQ 254



 Score = 27.6 bits (61), Expect = 9.4
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 2/124 (1%)

Query: 260 SYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKN-YKQSGSYTEPQTGTTKSGKNYKQS 318
           +Y          G N               K   + +  S +Y    +    SG  Y  S
Sbjct: 132 TYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISG-AYTNS 190

Query: 319 GSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQS 378
               E    +  +GK  +   +  +           Y ++   T    G     +N++  
Sbjct: 191 DRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAV 250

Query: 379 GSYT 382
             Y 
Sbjct: 251 AQYQ 254



 Score = 27.6 bits (61), Expect = 9.4
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 2/124 (1%)

Query: 280 SYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKN-YKQSGSYTEPQTGTTKSGKNYKQS 338
           +Y          G N               K   + +  S +Y    +    SG  Y  S
Sbjct: 132 TYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISG-AYTNS 190

Query: 339 GSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQS 398
               E    +  +GK  +   +  +           Y ++   T    G     +N++  
Sbjct: 191 DRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAV 250

Query: 399 GSYT 402
             Y 
Sbjct: 251 AQYQ 254



 Score = 27.6 bits (61), Expect = 9.4
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 2/124 (1%)

Query: 300 SYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKN-YKQSGSYTEPQTGTTKSGKNYKQS 358
           +Y          G N               K   + +  S +Y    +    SG  Y  S
Sbjct: 132 TYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISG-AYTNS 190

Query: 359 GSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQS 418
               E    +  +GK  +   +  +           Y ++   T    G     +N++  
Sbjct: 191 DRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAV 250

Query: 419 GSYT 422
             Y 
Sbjct: 251 AQYQ 254



 Score = 27.6 bits (61), Expect = 9.4
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 2/124 (1%)

Query: 320 SYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKN-YKQSGSYTEPQTGTTKSGKNYKQS 378
           +Y          G N               K   + +  S +Y    +    SG  Y  S
Sbjct: 132 TYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISG-AYTNS 190

Query: 379 GSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQS 438
               E    +  +GK  +   +  +           Y ++   T    G     +N++  
Sbjct: 191 DRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAV 250

Query: 439 GSYT 442
             Y 
Sbjct: 251 AQYQ 254


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.297    0.118    0.325 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,842,573
Number of extensions: 317196
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 40
Length of query: 451
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 354
Effective length of database: 3,993,456
Effective search space: 1413683424
Effective search space used: 1413683424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 59 (27.2 bits)