RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9103
         (451 letters)



>d2biba1 b.109.1.1 (A:309-541) Teichoic acid phosphorylcholine
           esterase Pce (LytD), C-terminal domain {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 233

 Score = 27.8 bits (60), Expect = 2.8
 Identities = 28/192 (14%), Positives = 48/192 (25%), Gaps = 6/192 (3%)

Query: 265 QTGTTKSGKN---YKQSGSYTEPQTG-TTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGS 320
           Q G  KS      Y+   S  E   G     G+ Y  + +    Q    K   ++     
Sbjct: 3   QAGWHKSAYGNWWYQAPDSTGEYAVGWNEIEGEWYYFNQTGILLQNQWKKWNNHWFYLTD 62

Query: 321 YTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKN-YKQSGSYTEPQTGTTKSGKNYKQSG 379
                    K    +       + + G  +  +  Y      +         G+ Y  + 
Sbjct: 63  SGASAKNWKKIDGIWYYFNKENQMEIGWVQDKEQWYYLDVDGSMKTGWLQYMGQWYYFAP 122

Query: 380 SYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSGSYTEPQTGTTKSGKNYKQSG 439
           S              Y    +          +G++Y    S    Q    K+   Y    
Sbjct: 123 SGEMKMGWVKDKETWYYMDSTGVMKTGEIEVAGQHYYLEDSGAMKQGWHKKANDWYFYKT 182

Query: 440 SYTEPQTGWFKI 451
             +    GW K 
Sbjct: 183 DGS-RAVGWIKD 193


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.297    0.118    0.325 

Gapped
Lambda     K      H
   0.267   0.0401    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,406,723
Number of extensions: 58423
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 54 (25.4 bits)