BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9104
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 7/94 (7%)
Query: 33 SSVLDLGDSDFEAVINQHETA---LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
S VL+L D +FE+ I+ +A LV F+APWCGHCK+L PEYE AAT +KG P
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVP---LA 57
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKA 123
KVDCT A TCNK+GVSGYPTLKIFR+G+ + A
Sbjct: 58 KVDCT-ANTNTCNKYGVSGYPTLKIFRDGEEAGA 90
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 66/94 (70%), Gaps = 7/94 (7%)
Query: 33 SSVLDLGDSDFEAVINQHETA---LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
S VL+L D +FE+ I+ +A LV F+APWCGH K+L PEYE AAT +KG P
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVP---LA 57
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKA 123
KVDCT A TCNK+GVSGYPTLKIFR+G+ + A
Sbjct: 58 KVDCT-ANTNTCNKYGVSGYPTLKIFRDGEEAGA 90
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 44 EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNK 103
E V N+++ L+ FYAPWCGHCK L+P+Y++ + DP I K+D T + +
Sbjct: 364 EIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL-SKDPNIVIAKMDAT--ANDVPSP 420
Query: 104 HGVSGYPTL 112
+ V G+PT+
Sbjct: 421 YEVRGFPTI 429
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
L L +F+ V+N + LV FYAPWCGHCKKL PEYEKAA ++ PPI KVD T
Sbjct: 9 TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQ 119
E + + VSGYPTLKIFR G+
Sbjct: 69 EQ-TDLAKRFDVSGYPTLKIFRKGR 92
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 36 LDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
L L +F+ V+N + LV FYAPWCGHCKKL PEYEKAA ++ PPI KVD T
Sbjct: 133 LVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT- 191
Query: 96 AGKETCNKHGVSGYPTLKIFRNGQ 119
A + + VSGYPTLKIFR G+
Sbjct: 192 AETDLAKRFDVSGYPTLKIFRKGR 215
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+E+ VL L D++F+ + +T L+ FYAPWCGHCK+ PEYEK A +K DPPI K
Sbjct: 13 EENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAK 72
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
+D T A ++ VSGYPT+KI + GQ
Sbjct: 73 IDATSASV-LASRFDVSGYPTIKILKKGQ 100
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+E+ V L D +F+ + +T L+ FYAPWCGHCK+ PEYEK A+ +K DPPI+ K
Sbjct: 15 EENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAK 74
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
+D T A +K VSGYPT+KI + GQ
Sbjct: 75 IDATSASM-LASKFDVSGYPTIKILKKGQ 102
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+E VL L S+F + H+ LV FYAPWCGHCK L PEY KAA +K I K
Sbjct: 5 EEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAK 64
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKK 125
VD TE + ++GV GYPT+K FRNG + K+
Sbjct: 65 VDATEES-DLAQQYGVRGYPTIKFFRNGDTASPKE 98
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 28 VSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPIS 87
V+ ++S+V+ L F I H+ L F+APWCGHCK + PEY KAA + + I+
Sbjct: 9 VAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL--VEKNIT 66
Query: 88 FVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127
++DCTE ++ C +H + G+P+LKIF+N V+ + E
Sbjct: 67 LAQIDCTE-NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYE 105
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 32 ESSVLDLGDSDFEAVINQ-HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+SSV L + + ++N + LV++YAPWCGHCK+L P Y++ A A + K
Sbjct: 357 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAK 416
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKA 123
+D TE + GYPT+ ++ G+ S++
Sbjct: 417 LDHTENDVRGV---VIEGYPTIVLYPGGKKSES 446
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
S+VL L +++F+ I + T + FYAPWCGHCK L P +E+ + + +VD
Sbjct: 5 STVLALTENNFDDTIAEGIT-FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 63
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQ 119
CT A + C+K+ V GYPTL +FR G+
Sbjct: 64 CT-AERNICSKYSVRGYPTLLLFRGGK 89
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVK-GADPPISFVKVD 92
V++L D F+ V++ + +V FYAPWCGHCK L+PE+ AA++VK + VD
Sbjct: 9 VIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVD 68
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQ 119
T + +++G+ G+PT+KIF+ G+
Sbjct: 69 AT-VNQVLASRYGIRGFPTIKIFQKGE 94
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 29 SCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISF 88
S +VL L +++F+ I + T + FYAPWCGHCK L P +E+ + +
Sbjct: 3 SGSSGTVLALTENNFDDTIAEGIT-FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKI 61
Query: 89 VKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
+VDCT A + C+K+ V GYPTL +FR G+
Sbjct: 62 AEVDCT-AERNICSKYSVRGYPTLLLFRGGK 91
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+VL L +++F+ I + T + FYAPWCGHCK L P +E+ + + +VDC
Sbjct: 1 TVLALTENNFDDTIAEGIT-FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 59
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQ 119
T A + C+K+ V GYPTL +FR G+
Sbjct: 60 T-AERNICSKYSVRGYPTLLLFRGGK 84
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 44 EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT-EAGKETCN 102
+A+ N + T+LV FYAPWCGHCKKL + KAA + G + V+C K C
Sbjct: 29 KAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNKNKALCA 85
Query: 103 KHGVSGYPTLKIFRNGQVSKAK 124
K+ V+G+PTL +FR ++ +K
Sbjct: 86 KYDVNGFPTLMVFRPPKIDLSK 107
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 35 VLDLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
V++L S+F VI LV FYAPWCGHC++L PE++KAAT +K VKV
Sbjct: 19 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK------DVVKVGA 72
Query: 94 TEAGKETC--NKHGVSGYPTLKIF 115
A K ++GV G+PT+KIF
Sbjct: 73 VNADKHQSLGGQYGVQGFPTIKIF 96
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADP---PISFV 89
S + L + + ++N + ALV FYA WC + L P +E+A+ +K P + F
Sbjct: 5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFA 64
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+VDC + + ++ +S YPTLK+FRNG K +
Sbjct: 65 RVDCDQHS-DIAQRYRISKYPTLKLFRNGXXXKRE 98
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 36 LDLGDSDFEAVINQHETALVM-FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
+DL F + Q +T V+ FYAPWCG C+ PE+E A +KG + KVDC
Sbjct: 6 IDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDC- 61
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQVSKAKKT 126
+A +TC K G+ YP++K++ Q +AKK+
Sbjct: 62 QAYPQTCQKAGIKAYPSVKLY---QYERAKKS 90
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 39 GDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK 98
++F+++I+Q+E +V F+A WCG CK++ P YE+ + + F+KVD E
Sbjct: 15 SQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY----TKMVFIKVDVDEVS- 69
Query: 99 ETCNKHGVSGYPTLKIFRNG 118
E K ++ PT K+++NG
Sbjct: 70 EVTEKENITSMPTFKVYKNG 89
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET 100
S+F++ I Q + +V FYA WCG CK + P EK + AD F K+D E G +
Sbjct: 9 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD----FYKLDVDELG-DV 63
Query: 101 CNKHGVSGYPTLKIFRNGQ 119
K+ VS PTL +F+NG+
Sbjct: 64 AQKNEVSAMPTLLLFKNGK 82
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET 100
S+F++ I Q + +V FYA WCG CK + P EK + AD F K+D E G +
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD----FYKLDVDELG-DV 69
Query: 101 CNKHGVSGYPTLKIFRNGQ 119
K+ VS PTL +F+NG+
Sbjct: 70 AQKNEVSAMPTLLLFKNGK 88
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 38 LGDSDFEAVINQH-ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96
L DSDF+ + QH + ++MF WC CKK+KP +E+ A+ ++G I F +D +A
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGD---IRFAYMDAEDA 60
Query: 97 GKETCNKHGVSGYPTLKIFRNGQVSKA 123
K T + + P+L +F +G + +
Sbjct: 61 EK-TMAELNIRTLPSLALFVDGMIREV 86
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
D+ ++ L +F+A +N E V FY+P C HC L P + + A +V G +
Sbjct: 95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGA 151
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVS 121
V+C + + C GV+ YP+L IFR+G +
Sbjct: 152 VNCGD-DRMLCRMKGVNSYPSLFIFRSGMAA 181
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 26 ALVSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPP 85
AL S + L D+ AV+ V F+A WCGHC P + A DVK P
Sbjct: 6 ALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPA 65
Query: 86 ISFVKVDCT-EAGKETCNKHGVSGYPTLKIF 115
+ +DC E C + G+PT++ F
Sbjct: 66 LYLAALDCAEETNSAVCRDFNIPGFPTVRFF 96
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 44 EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNK 103
E V N+++ L+ FYAPWCGHCK L+P+Y++ + DP I K+D T + +
Sbjct: 39 EIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL-SKDPNIVIAKMDAT--ANDVPSP 95
Query: 104 HGVSGYPTL 112
+ V G+PT+
Sbjct: 96 YEVRGFPTI 104
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 29 SCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISF 88
S D ++LD DS V+ V F+A WCGH P +++ A DVK P ++
Sbjct: 10 SSDPLTLLD-ADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNL 68
Query: 89 VKVDCT-EAGKETCNKHGVSGYPTLKIFR 116
+DC E C + ++G+PT++ F+
Sbjct: 69 AVLDCAEETNSAVCREFNIAGFPTVRFFQ 97
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 36 LDLGDSDFEAVINQHETALVM-FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
+DL F + Q +T V+ FYAPW G + PE+E A +KG + KVDC
Sbjct: 660 IDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK---VRAGKVDC- 715
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQVSKAKKT 126
+A +TC K G+ YP++K++ Q +AKK+
Sbjct: 716 QAYPQTCQKAGIKAYPSVKLY---QYERAKKS 744
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
D+ ++ L +F+A +N E V FY+P H L P + + A +V G +
Sbjct: 114 DDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL---LRIGA 170
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVS 121
V+C + + C GV+ YP+L IFR+G +
Sbjct: 171 VNCGD-DRMLCRMKGVNSYPSLFIFRSGMAA 200
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 19 LMLVLGFALVSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATD 78
L +L FA S + S V LG +F A + E LV F+APW + L PE KA+T
Sbjct: 427 LYDILAFAKESVN-SHVTTLGPQNFPA--SDKEPWLVDFFAPWSPPSRALLPELRKASTL 483
Query: 79 VKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ G + +DCT + CN + + YPT +F +
Sbjct: 484 LYGQ---LKVGTLDCT-IHEGLCNMYNIQAYPTTVVFNQSSI 521
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 34 SVLDLGDSDFEAVINQH---ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
SV+ L S F ++ Q E +V FY+PW + L PE+++ A + G I+
Sbjct: 544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGS 600
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIF 115
VDC + C + V YP ++ +
Sbjct: 601 VDCGQY-HSFCTQENVQRYPEIRFY 624
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 34 SVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
SV+++ D +FE V+ + LV F+APWCG C+ + P E+ A + +G V
Sbjct: 2 SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK----VKVVKV 57
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ T ++G+ PTL +F+NGQV
Sbjct: 58 NVDENPNTAAQYGIRSIPTLLLFKNGQV 85
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET 100
S+F++ I Q + +V FYA WCG K + P EK + AD F K+D E G +
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD----FYKLDVDELG-DV 69
Query: 101 CNKHGVSGYPTLKIFRNGQ 119
K+ VS PTL +F+NG+
Sbjct: 70 AQKNEVSAMPTLLLFKNGK 88
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCGHCK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A D +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 40 DSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
D D E+++ QH+ LV+ F+A WCG CK + P +++ + FVKVD +
Sbjct: 21 DGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-----FVKVDVDKL- 74
Query: 98 KETCNKHGVSGYPTLKIFRNGQ 119
+ET K+ +S PT +NG+
Sbjct: 75 EETARKYNISAMPTFIAIKNGE 96
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D FE V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P E+ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 40 DSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
D D E+++ QH+ LV+ F+A WCG CK + P +++ + FVKVD +
Sbjct: 12 DGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAI-----FVKVDVDKL- 65
Query: 98 KETCNKHGVSGYPTLKIFRNGQ 119
+ET K+ +S PT +NG+
Sbjct: 66 EETARKYNISAMPTFIAIKNGE 87
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 36 LDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
+++ D +F+ + QH LV F+A WC C+ + P E+ A + +G + K+D E
Sbjct: 5 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGK---LLVAKLDVDE 61
Query: 96 AGKETCNKHGVSGYPTLKIFRNGQ 119
K T ++ V PT+ +F++GQ
Sbjct: 62 NPK-TAXRYRVXSIPTVILFKDGQ 84
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 36 LDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
+++ D +F+ + QH LV F+A WC C+ + P E+ A + +G + K+D E
Sbjct: 4 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGK---LLVAKLDVDE 60
Query: 96 AGKETCNKHGVSGYPTLKIFRNGQ 119
K T ++ V PT+ +F++GQ
Sbjct: 61 NPK-TAXRYRVXSIPTVILFKDGQ 83
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 41 SDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK 98
+D E +IN+++ L++ F+A WCG C+ + P+ E A ++ P + F KVD + +
Sbjct: 8 ADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI----PEVEFAKVDVDQ-NE 62
Query: 99 ETCNKHGVSGYPTLKIFRNGQ 119
E K+ V+ PT ++G+
Sbjct: 63 EAAAKYSVTAMPTFVFIKDGK 83
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLN- 59
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
LV F+APWCG C+++ P+++ AA + G + K+D T+A +H + G P
Sbjct: 68 LVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKID-TQAHPAVAGRHRIQGIPAFI 123
Query: 114 IFRNGQ 119
+F G+
Sbjct: 124 LFHKGR 129
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 26 ALVSCDESSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADP 84
++ ++S+ + + D+ F V++ ++ LV F+A WCG CK + P E+ AT+ + D
Sbjct: 5 SMTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATDL 63
Query: 85 PISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
++ + VD ET V PTL +F++GQ
Sbjct: 64 TVAKLDVDT---NPETARNFQVVSIPTLILFKDGQ 95
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P + A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 38 LGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
L +F+ I +++ +V F+A WC C L P E+ A D P ++F K++ TE
Sbjct: 11 LNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDY----PQVAFGKLN-TEES 65
Query: 98 KETCNKHGVSGYPTLKIFRNGQV 120
++ ++G+ PT+ F+NG++
Sbjct: 66 QDIAMRYGIMSLPTIMFFKNGEL 88
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 27 LVSCDESSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPP 85
+ ++S+ + + D+ F V++ ++ LV F+A WCG CK + P E+ AT+ + D
Sbjct: 1 MTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATE-RATDLT 59
Query: 86 ISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
++ + VD ET V PTL +F++GQ
Sbjct: 60 VAKLDVDT---NPETARNFQVVSIPTLILFKDGQ 90
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 61
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 62 DQ-NPGTAPKYGIRGTPTLLLFKNGEVAATK 91
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 43 FEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC 101
F+A++ + + L+ FYAPWCGHCK+L+P Y KG + K+D T A T
Sbjct: 17 FDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK-DLVIAKMDAT-ANDITN 74
Query: 102 NKHGVSGYPTL 112
+++ V G+PT+
Sbjct: 75 DQYKVEGFPTI 85
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ + D+DF++ + + LV F+A WCG CK + P E+ A D +G +K+D
Sbjct: 4 AIVKVTDADFDSKV-ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGK---ADILKLDV 59
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQ 119
E T K+ V PTL +F++GQ
Sbjct: 60 DE-NPSTAAKYEVMSIPTLIVFKDGQ 84
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ + D+DF++ + + LV F+A WCG CK + P E+ A D +G +K+D
Sbjct: 5 AIVKVTDADFDSKV-ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGK---ADILKLDV 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQ 119
E T K+ V PTL +F++GQ
Sbjct: 61 DE-NPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI 70
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 71 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 100
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAACK 90
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGDVAATK 90
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ + D+DF++ + + LV F+A WCG CK + P E+ A D +G +K+D
Sbjct: 5 AIVKVTDADFDSKV-ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGK---ADILKLDV 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQ 119
E T K+ V PTL +F++GQ
Sbjct: 61 DE-NPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ + D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG C+ + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
V+ L +F++ + HE A+V F+A WC C L P E+ A D P + F K++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDY----PQVGFGKLNSD 56
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQ 119
E + ++GV PT+ F++G+
Sbjct: 57 E-NPDIAARYGVMSLPTVIFFKDGE 80
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L + F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ D F A ++ L F+APWCG CK + P E+ ++ + VK+D
Sbjct: 2 AIVKATDQSFSAETSEG-VVLADFWAPWCGPCKMIAPVLEELDQEMGDK---LKIVKIDV 57
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQV 120
E +ET K+GV PTL + ++G+V
Sbjct: 58 DE-NQETAGKYGVMSIPTLLVLKDGEV 83
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 31 DESSVLDLGDSDFEAV-INQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
D+ V L +FE V ++ + V FYAPWCGHCK+L P ++K K + I
Sbjct: 247 DKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHE-NIVIA 305
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIF 115
K+D T E H +PTLK F
Sbjct: 306 KMDSTANEVEAVKVH---SFPTLKFF 328
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRSIPTLLLFKNGEVAATK 90
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG CK +KP + + + F++VD +A ++ K+G+ G PTL
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDA-QDVAPKYGIRGIPTLL 78
Query: 114 IFRNGQVSKAK 124
+F+NG+V+ K
Sbjct: 79 LFKNGEVAATK 89
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 40 DSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK 98
D FE V+ + LV F+A WCG C+++ P E A + I VK++ E
Sbjct: 12 DDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDE-NP 67
Query: 99 ETCNKHGVSGYPTLKIFRNGQVSK 122
T K+GV PTL +++ G+V+K
Sbjct: 68 GTAAKYGVMSIPTLNVYQGGEVAK 91
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 12/80 (15%)
Query: 44 EAVINQHETALVMFYAPWCGHCKKLKPEYEK-----AATDVKGADPPISFVKVDCTEAGK 98
E V++ + L+ FYAPWCGHCK L P+YE+ A ++ K + KVD T
Sbjct: 19 EIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDR---VVIAKVDAT--AN 73
Query: 99 ETCNKHGVSGYPTLKIFRNG 118
+ ++ + G+PT+K++ G
Sbjct: 74 DVPDE--IQGFPTIKLYPAG 91
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 43 FEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCN 102
F+ V + ++ F+A WCG CK + P +EK +D D + F KVD E +
Sbjct: 26 FKQVTGGDKVVVIDFWATWCGPCKMIGPVFEK-ISDTPAGD-KVGFYKVDVDEQ-SQIAQ 82
Query: 103 KHGVSGYPTLKIFRNGQ 119
+ G+ PT F+NGQ
Sbjct: 83 EVGIRAMPTFVFFKNGQ 99
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 42 DFEAV-INQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET 100
+FE V ++ + V FYAPWCGHCK+L P ++K K + I K+D T E
Sbjct: 16 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHE-NIVIAKMDSTANEVEA 74
Query: 101 CNKHGVSGYPTLKIF 115
H +PTLK F
Sbjct: 75 VKVH---SFPTLKFF 86
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG K + P ++ A + +G ++ K++
Sbjct: 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNI 80
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 81 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 110
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG K + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WC CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 26 ALVSCDESSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADP 84
++ ++S+ + + D+ F V++ ++ LV F+A WCG K + P E+ AT+ + D
Sbjct: 2 SMTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATE-RATDL 60
Query: 85 PISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
++ + VD ET V PTL +F++GQ
Sbjct: 61 TVAKLDVDT---NPETARNFQVVSIPTLILFKDGQ 92
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKP---EYEKAATDVKGADPPISFVK 90
+ + L D++F+ I + LV F+A WCG C+ + P E+ +A D ++ K
Sbjct: 1 ATMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAK 54
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
++ E ET ++ G+ PTL +F+ G+ K
Sbjct: 55 LNVDE-NPETTSQFGIMSIPTLILFKGGEPVK 85
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKP---EYEKAATDVKGADPPISFVK 90
+ + L D++F+ I + LV F+A WCG C+ + P E+ +A D ++ K
Sbjct: 1 ATMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAK 54
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
++ E ET ++ G+ PTL +F+ G+ K
Sbjct: 55 LNVDE-NPETTSQFGIMSIPTLILFKGGRPVK 85
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGH-CKKLKPEYEKAATDVKGADPPISFVKVD 92
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGK---LTVAKLN 60
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 IDQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 91
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ + D+DF++ + + LV F+A WCG K + P E+ A D +G +K+D
Sbjct: 5 AIVKVTDADFDSKV-ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGK---ADILKLDV 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQ 119
E T K+ V PTL +F++GQ
Sbjct: 61 DE-NPSTAAKYEVMSIPTLIVFKDGQ 85
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQG---KLTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 32 ESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
+ V++ + ++ ++ F+APWCG C+ P + + A + G + FVKV
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKV 93
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
+ TEA + + PT+ ++RNG+
Sbjct: 94 N-TEAEPALSTRFRIRSIPTIXLYRNGK 120
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKP---EYEKAATDVKGADPPISFVK 90
+ + L D++F+ I LV F+A WCG C+ + P E+ +A D ++ K
Sbjct: 1 ATMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAK 54
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
++ E ET ++ G+ PTL +F+ G+ K
Sbjct: 55 LNVDE-NPETTSQFGIMSIPTLILFKGGEPVK 85
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET 100
++F +I Q++ ++ FYA WCG CK ++P K A P + FVK D E+ +
Sbjct: 21 TEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQ----AYPDVRFVKCDVDES-PDI 75
Query: 101 CNKHGVSGYPTLKIFRNGQV 120
+ V+ PT + ++GQ+
Sbjct: 76 AKECEVTAMPTFVLGKDGQL 95
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKP---EYEKAATDVKGADPPISFVK 90
+ + L D++F+ I LV F+A WCG C+ + P E+ +A D ++ K
Sbjct: 1 ATMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAK 54
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
++ E ET ++ G+ PTL +F+ G+ K
Sbjct: 55 LNVDE-NPETTSQFGIMSIPTLILFKGGRPVK 85
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ D F A ++ L F+APWCG K + P E+ D + D + VK+D
Sbjct: 2 AIVKATDQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEE--LDQEMGDK-LKIVKIDV 57
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQV 120
E +ET K+GV PTL + ++G+V
Sbjct: 58 DE-NQETAGKYGVMSIPTLLVLKDGEV 83
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ D F A ++ L F+APWCG K + P E+ D + D + VK+D
Sbjct: 2 AIVKATDQSFSAETSEG-VVLADFWAPWCGPSKMIAPVLEE--LDQEMGDK-LKIVKIDV 57
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQV 120
E +ET K+GV PTL + ++G+V
Sbjct: 58 DE-NQETAGKYGVMSIPTLLVLKDGEV 83
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 35 VLDLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
V D+ DS + E V+ +V F+APWCG CK + P ++ A + G I+ K++
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNT 58
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQ 119
EA ++ + PT+ F+NG+
Sbjct: 59 DEAPG-IATQYNIRSIPTVLFFKNGE 83
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116
+ WCG CK + P+YEK A + + F+K+DC + K + G+ PT KI +
Sbjct: 44 MFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQENKTLAKELGIRVVPTFKILK 99
Query: 117 N----GQVSKAKKTEL 128
G+V+ AK +L
Sbjct: 100 ENSVVGEVTGAKYDKL 115
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
V++ + F + LV F+APWCG C+ + P E+ A D G + VKV+
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVD 91
Query: 95 EAGKETCNKHGVSGYPTLKIFRNG 118
E ++GV PTL +FR G
Sbjct: 92 EH-PGLAARYGVRSVPTLVLFRRG 114
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116
+ WCG CK + P+YEK A + + F+K+DC + K + G+ PT KI +
Sbjct: 32 MFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQENKTLAKELGIRVVPTFKILK 87
Query: 117 N----GQVSKAKKTEL 128
G+V+ AK +L
Sbjct: 88 ENSVVGEVTGAKYDKL 103
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 32 ESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
E L L + +F+ VI ++ LV +A WC C +P Y+K A KG F ++
Sbjct: 3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG---KAVFGRL 59
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ E K +K+ V PT IF NGQ+
Sbjct: 60 NVDENQK-IADKYSVLNIPTTLIFVNGQL 87
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 37 DLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
D+ DS + E V+ +V F+APWCG CK + P ++ A + G I+ K++ E
Sbjct: 3 DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDE 59
Query: 96 AGKETCNKHGVSGYPTLKIFRNGQ 119
A ++ + PT+ F+NG+
Sbjct: 60 APG-IATQYNIRSIPTVLFFKNGE 82
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ + D+DF++ + + LV F+A CG CK + P E+ A D +G +K+D
Sbjct: 4 AIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDV 59
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQ 119
E T K+ V PTL +F++GQ
Sbjct: 60 DE-NPSTAAKYEVMSIPTLIVFKDGQ 84
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WC K + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQG---KLTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEAVINQHETA-LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ + + + A LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNI 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+ G PTL +F+NG+V+ K
Sbjct: 61 DQ-NPGTAPKYIERGIPTLLLFKNGEVAATK 90
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFY--APWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
+++++ +S+ + V+ Q T V+FY + HC +L P E A G K+
Sbjct: 8 NIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKL 64
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
DC +A + + G+ PT+ +F+NGQ
Sbjct: 65 DC-DAEQMIAAQFGLRAIPTVYLFQNGQ 91
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 36 LDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
L + DS F+ V+ LV F+A WCG CK + P + + G ++ KV+
Sbjct: 5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNID 61
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ ET N + V PTL + R+G+V K
Sbjct: 62 D-NPETPNAYQVRSIPTLMLVRDGKVIDKK 90
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
V+ + D++FE+ V+ + LV F+A WCG C+ + P AA + VK++
Sbjct: 9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEI 65
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ T K+ V G P L++ + Q+
Sbjct: 66 -DPNPTTVKKYKVEGVPALRLVKGEQI 91
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 35 VLDLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
V D+ DS + E V+ +V F+APWCG K + P ++ A + G I+ K++
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGK---IAVYKLNT 58
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQ 119
EA ++ + PT+ F+NG+
Sbjct: 59 DEAPG-IATQYNIRSIPTVLFFKNGE 83
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 42 DFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
DF +N+ LV+ FYA WCG CK + P+ E+ + + + F+KVD E ++
Sbjct: 10 DFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKVDVDEC-ED 64
Query: 100 TCNKHGVSGYPTLKIFRNGQ 119
+ ++ PT +NGQ
Sbjct: 65 IAQDNQIACMPTFLFMKNGQ 84
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 33 SSVLDLGDSDFEAVINQHETALVMFY--APWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+++++ +S+ + + Q T V+FY + HC +L P E A G K
Sbjct: 7 QNIVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQ---FILAK 63
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
+DC +A + + G+ PT+ +F+NGQ
Sbjct: 64 LDC-DAEQXIAAQFGLRAIPTVYLFQNGQ 91
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116
+ WCG K + P+YEK A + + F+K+DC + K + G+ PT KI +
Sbjct: 31 MFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQENKTLAKELGIRVVPTFKILK 86
Query: 117 N----GQVSKAKKTEL 128
G+V+ AK +L
Sbjct: 87 ENSVVGEVTGAKYDKL 102
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 38 LGDSDFEAVINQHET-ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96
+ D F+ V+ + LV F+APWCG C+ + P ++ A + K + VK++ T+
Sbjct: 6 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLN-TDE 61
Query: 97 GKETCNKHGVSGYPTLKIFRNGQ 119
+++G+ PT+ +F+ G+
Sbjct: 62 SPNVASEYGIRSIPTIMVFKGGK 84
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGH--------------CKKLKPEYEKAATDV 79
++ L D F+ V+ LV F+A WCG CK + P ++ A +
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 80 KGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+G ++ K++ + T K+G+ G PTL +F+NG+V+ K
Sbjct: 65 QGK---LTVAKLNIDQ-NPGTAPKYGIRGIPTLLLFKNGEVAATK 105
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F+A WCG CK + P EK A A +F K+D E + K VS PTL
Sbjct: 30 VVDFFATWCGPCKMIAPMIEKFAEQYSDA----AFYKLDVDEVS-DVAQKAEVSSMPTLI 84
Query: 114 IFRNGQ 119
++ G+
Sbjct: 85 FYKGGK 90
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
++ FYAPWC C+ L+PE+E A G D ++ KVD TE + ++ PT+
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAE--WGEDLEVNIAKVDVTEQ-PGLSGRFIINALPTIY 82
Query: 114 IFRNGQVSKAK 124
++G+ + +
Sbjct: 83 HCKDGEFRRYQ 93
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 29 SCDESSVLDLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPIS 87
S + SS+++ D + + V + + +V FY+P C +CK +P +E+ A + +
Sbjct: 2 SLNGSSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSS---AV 58
Query: 88 FVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
F +++ T K+GV G PT K F +G+
Sbjct: 59 FGRINIA-TNPWTAEKYGVQGTPTFKFFCHGR 89
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F+A WCG CK + P EK A A +F K+D E + K VS PTL
Sbjct: 23 VVDFFATWCGPCKMIAPMIEKFAEQYSDA----AFYKLDVDEVS-DVAQKAEVSSMPTLI 77
Query: 114 IFRNGQ 119
++ G+
Sbjct: 78 FYKGGK 83
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 33 SSVLDLGDS-DFE-AVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
S+ ++ D DF+ V+N +V F+A WCG CK L P EK G + K
Sbjct: 12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAK 68
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
VD + + ++ VS PT+ +NG V
Sbjct: 69 VDIDDH-TDLAIEYEVSAVPTVLAMKNGDV 97
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F+APW C ++ + A ++ P +SFVK++ E E K+ +S PT
Sbjct: 36 VVHFWAPWAPQCAQMNEVMAELAKEL----PQVSFVKLEA-EGVPEVSEKYEISSVPTFL 90
Query: 114 IFRNGQ 119
F+N Q
Sbjct: 91 FFKNSQ 96
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F+APW C ++ + A ++ P +SFVK++ E E K+ +S PT
Sbjct: 42 VVHFWAPWAPQCAQMNEVMAELAKEL----PQVSFVKLEA-EGVPEVSEKYEISSVPTFL 96
Query: 114 IFRNGQ 119
F+N Q
Sbjct: 97 FFKNSQ 102
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 42 DFEAVINQHETA----LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
+F+A + + + A ++ F A WCG C+ + P + + A GA F+KVD E
Sbjct: 24 EFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA----VFLKVDVDEL- 78
Query: 98 KETCNKHGVSGYPTLKIFRNG----QVSKAKKTEL 128
KE K+ V PT ++G +V A+K +L
Sbjct: 79 KEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 113
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 44 EAVINQHETA----LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
EA++N+ + A LV F+A WCG C++L + + A+ ++F+KVD + G
Sbjct: 13 EALLNRIKEAPGLVLVDFFATWCGPCQRLG----QILPSIAEANKDVTFIKVDVDKNG-N 67
Query: 100 TCNKHGVSGYPTL 112
+ +GVS P L
Sbjct: 68 AADAYGVSSIPAL 80
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 34 SVLDLGDSD-FEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
SV+D+ + F ++++ + F A WCG CK ++ EK A + P + F KVD
Sbjct: 20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF----PTVKFAKVD 75
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ E +K V PT I R+G++
Sbjct: 76 A-DNNSEIVSKCRVLQLPTFIIARSGKM 102
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 48 NQHETALVM-FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGV 106
N+ +T +V+ F A WCG C+ + P + D+ P + F+KVD T+ K + +
Sbjct: 35 NESKTLVVVDFTASWCGPCRFIAPFF----ADLAKKLPNVLFLKVD-TDELKSVASDWAI 89
Query: 107 SGYPTLKIFRNG----QVSKAKKTEL 128
PT + G +V AKK EL
Sbjct: 90 QAMPTFMFLKEGKILDKVVGAKKDEL 115
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F+A WCG K + P EK A A +F K+D E + K VS PTL
Sbjct: 23 VVDFFATWCGPSKMIAPMIEKFAEQYSDA----AFYKLDVDEVS-DVAQKAEVSSMPTLI 77
Query: 114 IFRNGQ 119
++ G+
Sbjct: 78 FYKGGK 83
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F+A WCG K + P EK A A +F K+D E + K VS PTL
Sbjct: 31 VVDFFATWCGPSKMIAPMIEKFAEQYSDA----AFYKLDVDEVS-DVAQKAEVSSMPTLI 85
Query: 114 IFRNGQ 119
++ G+
Sbjct: 86 FYKGGK 91
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG CK +KP + + + F++VD +A ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDA-QDVASEAEVKATPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS 107
+H+ +V F A WCG CK + P +E + D G + F+KVD G++
Sbjct: 22 EEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAV-AAVAEAAGIT 77
Query: 108 GYPTLKIFRNG 118
PT ++++G
Sbjct: 78 AMPTFHVYKDG 88
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112
A+V F+ C HCK + EK P ++ VD +EA E + G PTL
Sbjct: 22 AIVFFHKNLCPHCKNM----EKVLDKFGARAPQVAISSVD-SEARPELMKELGFERVPTL 76
Query: 113 KIFRNGQVSK 122
R+G+V+K
Sbjct: 77 VFIRDGKVAK 86
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
++ F A WCG C+ + P + + A GA F+KVD E K+ + V PT
Sbjct: 32 IIDFTASWCGPCRVIAPVFAEYAKKFPGA----IFLKVDVDEL-KDVAEAYNVEAMPTFL 86
Query: 114 IFRNGQ 119
++G+
Sbjct: 87 FIKDGE 92
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112
A+V FYA WCG CK + P ++ A + G I KVD TE +E G+ P++
Sbjct: 41 AIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVD-TEKEQELAGAFGIRSIPSI 96
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS 107
+H+ +V F A WCG CK + P +E + D G + F+KVD G++
Sbjct: 22 EEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAV-AAVAEAAGIT 77
Query: 108 GYPTLKIFRNG 118
PT ++++G
Sbjct: 78 AMPTFHVYKDG 88
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
V D D D + + ++ F+A WCG CK + P+ + +T + AD + +KVD
Sbjct: 4 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELST--QFAD-NVVVLKVDV 60
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNG 118
E ++ ++ +S PT +NG
Sbjct: 61 DEC-EDIAMEYNISSMPTFVFLKNG 84
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
V D D D + + ++ F+A WCG CK + P+ + +T + AD + +KVD
Sbjct: 9 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELST--QFAD-NVVVLKVDV 65
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNG 118
E ++ ++ +S PT +NG
Sbjct: 66 DEC-EDIAMEYNISSMPTFVFLKNG 89
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG CK +KP + + + F++VD + ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC-QDVASESEVKSMPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 36 LDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
+D FE + +V F A WC CK + P + + A P ++F+KVD E
Sbjct: 12 VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF----PNVTFLKVDVDE 67
Query: 96 AGKETCNKHGVSGYPTLKIFRNGQV 120
K + V PT ++G++
Sbjct: 68 L-KAVAEEWNVEAMPTFIFLKDGKL 91
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112
A+V FYA WCG CK + P E+ + + G I KV+ + E G+ G PT+
Sbjct: 54 AIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKE-PELARDFGIQGIPTI 109
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116
F A WCG C+ + P + D+ P F+KVD E K + V PT +
Sbjct: 41 FTASWCGPCRIMAPVF----ADLAKKFPNAVFLKVDVDEL-KPIAEQFSVEAMPTFLFMK 95
Query: 117 NGQV 120
G V
Sbjct: 96 EGDV 99
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG K +KP + + + F++VD +A ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPAKMIKPFFHSLSEKYSN----VIFLEVDVDDA-QDVASEAEVKATPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG CK +KP + + + F++VD + ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC-QDVASECEVKSMPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 33 SSVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV-- 89
S V++L D F++++ + + V++Y PW H ++ + ++FV
Sbjct: 15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA 74
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIF 115
++D E + + VSG+PT++ +
Sbjct: 75 RIDG-EKYPDVIERMRVSGFPTMRYY 99
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG CK +KP + + + F++VD + ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC-QDVASEXEVKCMPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
L F A WCG CK++ P Y + + + P + F+ +D E + + + PT
Sbjct: 50 LANFSARWCGPCKQIAPYYIELSENY----PSLMFLVIDVDELSDFSASWE-IKATPTFF 104
Query: 114 IFRNGQ 119
R+GQ
Sbjct: 105 FLRDGQ 110
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG K +KP + + + F++VD ++ ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDS-QDVASESEVKSMPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG CK +KP + + + F++VD + ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVNDC-QDVASECEVKCMPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG CK +KP + + + F++VD + ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC-QDVASECEVKCMPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG CK +KP + + + F++VD + ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC-QDVASECEVKCTPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 32 ESSVLDLGDSDFEAVINQHETA-----LVMFYAPWCGHCKKLKPEYEKAATDVK---GAD 83
+SSV+DL DF V H A +V+FY CG C++ + K A +K G D
Sbjct: 22 DSSVVDLSGDDFSRV---HRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKD 78
Query: 84 P--PISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115
+ V+C + + C K+ ++ P L F
Sbjct: 79 ALQIATAAAVNCA-SEVDLCRKYDINFVPRLFFF 111
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112
A+V FYA WCG CK + P E+ + + G I KV+ + E G+ PT+
Sbjct: 54 AIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNV-DKEPELARDFGIQSIPTI 109
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV---DCTEAGKETCNKHGVSGY 109
A++ F+APWC C+ P V + P ++FV V D A +E NK+ V +
Sbjct: 28 AVLWFWAPWCPTCQGEAP----VVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTF 83
Query: 110 PTL 112
L
Sbjct: 84 TQL 86
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV---DCTEAGKETCNKHGVSGY 109
A++ F+APWC C+ P V + P ++FV V D A +E NK+ V +
Sbjct: 42 AVLWFWAPWCPTCQGEAP----VVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTF 97
Query: 110 PTL 112
L
Sbjct: 98 TQL 100
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG K +KP + + + F++VD + ++ ++ V PT +
Sbjct: 35 VVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDC-QDVASECEVKSMPTFQ 89
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 90 FFKKGQ 95
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
L F A WCG +++ P Y + + + P + F+ +D E + + + PT
Sbjct: 50 LANFSARWCGPSRQIAPYYIELSENY----PSLMFLVIDVDELSDFSASWE-IKATPTFF 104
Query: 114 IFRNGQ 119
R+GQ
Sbjct: 105 FLRDGQ 110
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG K +KP + + + F++VD + ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDC-QDVASECEVKRMPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 47 INQHETALVM-FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHG 105
+N T +V+ F+A WC C E +K K I +KVD + + K
Sbjct: 38 VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQ---KYYGKRIYLLKVDL-DKNESLARKFS 93
Query: 106 VSGYPTLKIFRN 117
V PT+ + +N
Sbjct: 94 VKSLPTIILLKN 105
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 58 YAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-GKETCNKHGVSGYPTL 112
+ WCG CK+L K + + +K+D + G E K+GV YPTL
Sbjct: 35 FTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTL 90
>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide
Reductase
Length = 291
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET-----CNKHGVSGYP 110
M+ A WC HC+ K + A V V+C+ G T C + G++ YP
Sbjct: 203 MYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGPGTPQAQECTEAGITSYP 253
Query: 111 TLKIFRNGQVSKAKKT 126
T I NG+ ++
Sbjct: 254 TWII--NGRTYTGVRS 267
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 32 ESSVLDLGDSDFEAVINQHETA-----LVMFYAPWCGHCKKLKPEYEKAATDVK---GAD 83
+SSV+DL DF V H A +V+FY CG ++ + K A +K G D
Sbjct: 22 DSSVVDLSGDDFSRV---HRVAPLCPWIVLFYNDGCGASRRYASTFSKFAGGLKVEHGKD 78
Query: 84 P--PISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115
+ V+C + + C K+ ++ P L F
Sbjct: 79 ALQIATAAAVNCA-SEVDLCRKYDINFVPRLFFF 111
>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
Synechococcus Sp
Length = 106
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET-----CNKHGVSGY 109
M+ A WC HC+ K + A V V+C+ G T C + G++ Y
Sbjct: 17 TMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGPGTPQAQECTEAGITSY 67
Query: 110 PTLKIFRNGQVSKAKKT 126
PT I NG+ ++
Sbjct: 68 PTWII--NGRTYTGVRS 82
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKA 75
+V+ + WCG CK LKP++ ++
Sbjct: 43 MVIIHKSWCGACKALKPKFAES 64
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKA 75
+V+ + WCG CK LKP++ ++
Sbjct: 50 MVIIHKSWCGACKALKPKFAES 71
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108
Q+ + ++ F A WC C K+K EY K + ++ V +D + + ++H +
Sbjct: 39 QNSSIVIKFGAVWCKPCNKIK-EYFKNQLNYY----YVTLVDID-VDIHPKLNDQHNIKA 92
Query: 109 YPTLKIFRN 117
PT + + N
Sbjct: 93 LPTFEFYFN 101
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 49 QHETALVMFYAPWCGHCKKLKPEYEK 74
+ + ++ F A WCG C+K P EK
Sbjct: 32 RGKVVMLQFTASWCGVCRKEMPFIEK 57
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 59 APWCGHCK------KLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108
AP G+ K P + A T + +DP S D + K NKH SG
Sbjct: 231 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 286
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 59 APWCGHCK------KLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108
AP G+ K P + A T + +DP S D + K NKH SG
Sbjct: 231 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 286
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 59 APWCGHCK------KLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108
AP G+ K P + A T + +DP S D + K NKH SG
Sbjct: 231 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 286
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V F A WCG CK +KP + + + F++VD + ++ ++ V PT +
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVD-VDDXQDVASEXEVKCMPTFQ 78
Query: 114 IFRNGQ 119
F+ GQ
Sbjct: 79 FFKKGQ 84
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 70 PEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108
P + A T + +DP S D + K NKH SG
Sbjct: 260 PALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 298
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 70 PEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108
P + A T + +DP S D + K NKH SG
Sbjct: 341 PALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSG 379
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 42 DFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC 101
D E ++ T +V F+A W C+ P Y A +K ++F KVD +
Sbjct: 18 DEELERDKRVTWIVEFFANWSNDCQSFAPIY--ADLSLKYNCTGLNFGKVDVGRY-TDVS 74
Query: 102 NKHGVS------GYPTLKIFRNGQ 119
++ VS PTL +F+ G+
Sbjct: 75 TRYKVSTSPLTKQLPTLILFQGGK 98
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 45 AVINQHETALVMFYAPWCGHCKKLKPEYE 73
++ N+ + ++ F+ WC CKK P+++
Sbjct: 29 SIPNKGQKTILHFWTSWCPPCKKELPQFQ 57
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 54 LVMFYAPWCGHCKKLK------PEYEKAATDVKGADPPISFVKVDCTEAGKETCNKH-GV 106
++ YA WC CK+ + P+ +KA AD + V +A KH V
Sbjct: 32 MLDLYADWCVACKEFEKYTFSDPQVQKAL-----ADTVLLQANVTANDAQDVALLKHLNV 86
Query: 107 SGYPTLKIFRNGQ 119
G PT+ +F +GQ
Sbjct: 87 LGLPTI-LFFDGQ 98
>pdb|2LQO|A Chain A, Mrx1 Reduced
pdb|2LQQ|A Chain A, Oxidized Mrx1
Length = 92
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 53 ALVMFYAPWCGHCKKLK 69
AL ++ WCG+C +LK
Sbjct: 5 ALTIYTTSWCGYCLRLK 21
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 54 LVMFYAPWCGHCKKLK------PEYEKAATDVKGADPPISFVKVDCTEAGKETCNKH-GV 106
++ YA WC CK+ + P+ +KA AD + V +A KH V
Sbjct: 35 MLDLYADWCVACKEFEKYTFSDPQVQKAL-----ADTVLLQANVTANDAQDVALLKHLNV 89
Query: 107 SGYPTLKIFRNGQ 119
G PT+ +F +GQ
Sbjct: 90 LGLPTI-LFFDGQ 101
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 20/84 (23%)
Query: 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT--EAGK---------------- 98
F+A WCG C++ P + K + V +D +A K
Sbjct: 35 FWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQVPAEFTVAFDPK 94
Query: 99 -ETCNKHGVSGYPT-LKIFRNGQV 120
+T +GV G PT I RNG+V
Sbjct: 95 GQTPRLYGVKGXPTSFLIDRNGKV 118
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK 98
SDF + +T LV +A WC C+K P ++ + G + + + +D + K
Sbjct: 56 SDF-----RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEK 108
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115
+F +P C HC K E+ A ++ A + ++ E + ++G+ PT+ I
Sbjct: 8 LFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVME-NPQKAMEYGIMAVPTIVI- 62
Query: 116 RNGQVS 121
NG V
Sbjct: 63 -NGDVE 67
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 54 LVMFYAPWCGHCKKLKPEYEK 74
+V +A WCG C+K P K
Sbjct: 28 IVNLWATWCGPCRKEXPAXSK 48
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 58 YAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGY 109
Y + K +PE KA T+ G DP +F +D +E + + G+S Y
Sbjct: 164 YLSYEMKMAKPEPEIFKAVTEDAGIDPKETFF-IDDSEINCKVAQELGISTY 214
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 67 KLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGY 109
K +PE KA T+ G DP +F +D +E + + G+S Y
Sbjct: 173 KPEPEIFKAVTEDAGIDPKETFF-IDDSEINCKVAQELGISTY 214
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 49 QHETALVMFYAPWCGHCKKLKPEYEK 74
+ + LV F+A WC +C+ P ++
Sbjct: 40 RGKIVLVNFWASWCPYCRDEXPSXDR 65
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 61 WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
W K+LK +YE D G P + VD AG
Sbjct: 32 WAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAG 68
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 28 VSCDESSVLDLGDSDFEAVINQHETALVMFY---APWCGHC 65
V+ + S +DL D+ V + AL+ FY +PW C
Sbjct: 114 VNRENSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLWRC 154
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 28 VSCDESSVLDLGDSDFEAVINQHETALVMFY---APWCGHC 65
V+ + S +DL D+ V + AL+ FY +PW C
Sbjct: 114 VNRENSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLWRC 154
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 28 VSCDESSVLDLGDSDFEAVINQHETALVMFY---APWCGHC 65
V+ + S +DL D+ V + AL+ FY +PW C
Sbjct: 114 VNRENSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLWRC 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,750,808
Number of Sequences: 62578
Number of extensions: 133396
Number of successful extensions: 667
Number of sequences better than 100.0: 179
Number of HSP's better than 100.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 185
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)