Query psy9104
Match_columns 128
No_of_seqs 110 out of 1840
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 19:00:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.6E-24 3.4E-29 129.5 10.8 90 34-127 2-91 (101)
2 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2E-24 4.4E-29 131.1 10.6 93 31-127 7-103 (113)
3 cd02954 DIM1 Dim1 family; Dim1 99.9 5.7E-24 1.2E-28 128.5 9.9 84 40-127 2-87 (114)
4 cd02962 TMX2 TMX2 family; comp 99.9 3.5E-23 7.5E-28 131.5 11.8 94 31-127 26-127 (152)
5 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2.3E-23 5E-28 125.0 10.4 90 34-127 2-93 (104)
6 KOG0910|consensus 99.9 6.8E-24 1.5E-28 132.1 8.0 90 34-127 44-134 (150)
7 cd02996 PDI_a_ERp44 PDIa famil 99.9 4.3E-23 9.4E-28 124.7 11.0 94 33-127 1-98 (108)
8 PHA02278 thioredoxin-like prot 99.9 5.7E-23 1.2E-27 122.9 9.3 86 39-127 3-91 (103)
9 PF00085 Thioredoxin: Thioredo 99.9 1.4E-22 3.1E-27 120.9 10.4 89 35-127 1-90 (103)
10 cd02985 TRX_CDSP32 TRX family, 99.9 1.2E-22 2.6E-27 121.8 9.6 85 39-127 2-90 (103)
11 cd02965 HyaE HyaE family; HyaE 99.9 7.9E-23 1.7E-27 122.8 8.7 92 32-127 9-102 (111)
12 cd03005 PDI_a_ERp46 PDIa famil 99.9 3.5E-22 7.6E-27 119.2 10.8 92 35-128 2-93 (102)
13 COG3118 Thioredoxin domain-con 99.9 1.2E-22 2.7E-27 138.5 9.6 94 31-128 21-117 (304)
14 cd03065 PDI_b_Calsequestrin_N 99.9 4.5E-22 9.7E-27 121.8 9.3 93 30-127 6-105 (120)
15 PRK09381 trxA thioredoxin; Pro 99.9 9.8E-22 2.1E-26 118.9 10.6 92 32-127 2-94 (109)
16 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.3E-21 2.9E-26 118.1 10.7 89 35-127 2-98 (109)
17 cd02989 Phd_like_TxnDC9 Phosdu 99.9 8E-22 1.7E-26 120.0 9.6 89 34-127 5-94 (113)
18 cd02956 ybbN ybbN protein fami 99.9 9.6E-22 2.1E-26 116.3 9.6 82 42-127 2-85 (96)
19 cd02948 TRX_NDPK TRX domain, T 99.9 9.2E-22 2E-26 117.8 9.6 86 38-127 5-90 (102)
20 PTZ00443 Thioredoxin domain-co 99.9 2.4E-21 5.2E-26 130.0 11.9 92 32-127 29-125 (224)
21 cd02994 PDI_a_TMX PDIa family, 99.9 2.4E-21 5.2E-26 115.6 10.2 88 34-127 2-89 (101)
22 cd02997 PDI_a_PDIR PDIa family 99.9 3.4E-21 7.4E-26 115.3 10.5 91 35-127 2-94 (104)
23 PRK10996 thioredoxin 2; Provis 99.9 3.8E-21 8.1E-26 121.1 10.7 92 32-127 34-125 (139)
24 cd02963 TRX_DnaJ TRX domain, D 99.9 2.4E-21 5.2E-26 117.6 9.3 88 37-127 8-98 (111)
25 cd02957 Phd_like Phosducin (Ph 99.9 2.4E-21 5.3E-26 118.0 8.8 89 33-127 4-95 (113)
26 cd02999 PDI_a_ERp44_like PDIa 99.9 3.5E-21 7.6E-26 114.9 8.8 74 48-127 16-90 (100)
27 KOG0907|consensus 99.9 3.6E-21 7.9E-26 115.4 8.5 75 48-127 19-93 (106)
28 cd03001 PDI_a_P5 PDIa family, 99.9 1.1E-20 2.4E-25 112.9 10.6 89 35-127 2-92 (103)
29 PTZ00102 disulphide isomerase; 99.9 2.2E-20 4.7E-25 137.8 13.4 93 33-127 32-124 (477)
30 cd02993 PDI_a_APS_reductase PD 99.8 2.2E-20 4.7E-25 113.1 10.6 92 34-127 2-98 (109)
31 PLN00410 U5 snRNP protein, DIM 99.8 1.3E-20 2.9E-25 117.9 9.3 84 39-126 10-97 (142)
32 cd02986 DLP Dim1 family, Dim1- 99.8 1.5E-20 3.3E-25 113.0 9.2 80 40-123 2-83 (114)
33 PTZ00051 thioredoxin; Provisio 99.8 1.4E-20 3E-25 111.7 8.9 84 39-127 7-90 (98)
34 cd02984 TRX_PICOT TRX domain, 99.8 1.6E-20 3.4E-25 111.2 9.2 85 39-127 1-87 (97)
35 TIGR01126 pdi_dom protein disu 99.8 4.5E-20 9.8E-25 109.9 9.8 88 38-127 1-88 (102)
36 cd02998 PDI_a_ERp38 PDIa famil 99.8 9.2E-20 2E-24 109.1 10.7 91 35-127 2-95 (105)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 9.5E-20 2.1E-24 108.9 10.4 90 35-127 2-94 (104)
38 cd02953 DsbDgamma DsbD gamma f 99.8 4.2E-20 9.2E-25 110.8 8.7 84 41-127 2-93 (104)
39 KOG0190|consensus 99.8 5.4E-20 1.2E-24 133.9 9.4 97 30-127 22-118 (493)
40 TIGR01068 thioredoxin thioredo 99.8 2E-19 4.4E-24 106.7 10.2 85 39-127 2-87 (101)
41 cd02961 PDI_a_family Protein D 99.8 1.8E-19 3.9E-24 106.6 9.8 89 37-127 2-91 (101)
42 cd02992 PDI_a_QSOX PDIa family 99.8 2.5E-19 5.3E-24 109.3 10.4 86 34-119 2-89 (114)
43 cd02950 TxlA TRX-like protein 99.8 1.2E-19 2.7E-24 114.5 9.3 85 40-127 10-96 (142)
44 cd03000 PDI_a_TMX3 PDIa family 99.8 1.9E-19 4.1E-24 108.1 9.6 84 41-127 7-90 (104)
45 cd02987 Phd_like_Phd Phosducin 99.8 2.1E-19 4.5E-24 117.0 9.4 90 32-127 61-154 (175)
46 cd02949 TRX_NTR TRX domain, no 99.8 5.3E-19 1.1E-23 104.9 9.2 80 44-127 6-86 (97)
47 TIGR01295 PedC_BrcD bacterioci 99.8 1.3E-18 2.9E-23 107.1 9.4 89 34-127 7-109 (122)
48 TIGR01130 ER_PDI_fam protein d 99.8 1.4E-18 3E-23 127.5 10.7 93 34-127 2-95 (462)
49 cd02975 PfPDO_like_N Pyrococcu 99.8 4.2E-18 9.2E-23 103.7 8.1 81 41-126 13-95 (113)
50 cd02988 Phd_like_VIAF Phosduci 99.8 5.7E-18 1.2E-22 111.6 8.8 89 31-127 80-171 (192)
51 cd03007 PDI_a_ERp29_N PDIa fam 99.8 7.5E-18 1.6E-22 102.2 8.5 86 34-127 2-101 (116)
52 cd02947 TRX_family TRX family; 99.8 1.2E-17 2.5E-22 97.1 9.0 81 42-127 2-82 (93)
53 TIGR00424 APS_reduc 5'-adenyly 99.8 1.1E-17 2.5E-22 122.1 10.9 94 31-126 349-447 (463)
54 cd02951 SoxW SoxW family; SoxW 99.8 7E-18 1.5E-22 104.3 8.3 84 41-127 4-105 (125)
55 KOG0908|consensus 99.7 5.5E-18 1.2E-22 113.1 7.0 87 36-127 4-93 (288)
56 cd02952 TRP14_like Human TRX-r 99.7 3E-17 6.5E-22 100.2 8.8 82 39-123 8-105 (119)
57 PLN02309 5'-adenylylsulfate re 99.7 3.5E-17 7.6E-22 119.5 10.6 92 32-126 344-441 (457)
58 cd02959 ERp19 Endoplasmic reti 99.7 3.4E-17 7.3E-22 100.2 8.4 84 40-126 9-95 (117)
59 PTZ00102 disulphide isomerase; 99.7 4.5E-17 9.8E-22 120.3 10.5 94 32-127 356-451 (477)
60 PTZ00062 glutaredoxin; Provisi 99.7 7E-17 1.5E-21 107.0 8.1 77 38-127 4-81 (204)
61 cd02955 SSP411 TRX domain, SSP 99.7 1.6E-16 3.4E-21 97.9 6.3 82 39-124 4-97 (124)
62 KOG0190|consensus 99.7 6.3E-16 1.4E-20 112.9 8.6 91 33-127 366-459 (493)
63 KOG0912|consensus 99.7 3.7E-16 7.9E-21 107.1 6.9 88 39-127 2-92 (375)
64 cd03008 TryX_like_RdCVF Trypar 99.6 2.4E-15 5.3E-20 95.0 8.5 74 49-122 24-127 (146)
65 PF13905 Thioredoxin_8: Thiore 99.6 4.7E-15 1E-19 87.3 9.1 69 50-119 1-94 (95)
66 PRK14018 trifunctional thiored 99.6 3.2E-15 6.9E-20 110.7 9.9 78 48-128 54-160 (521)
67 cd03009 TryX_like_TryX_NRX Try 99.6 3.2E-15 6.9E-20 93.0 8.5 77 48-124 16-116 (131)
68 TIGR01130 ER_PDI_fam protein d 99.6 7.6E-15 1.7E-19 107.8 10.1 93 32-127 345-440 (462)
69 PF13098 Thioredoxin_2: Thiore 99.6 1.3E-15 2.8E-20 92.2 5.0 81 48-128 3-103 (112)
70 cd02982 PDI_b'_family Protein 99.6 8.3E-15 1.8E-19 87.4 8.3 77 43-123 5-85 (103)
71 TIGR00411 redox_disulf_1 small 99.6 7.9E-15 1.7E-19 84.0 7.1 66 53-126 2-67 (82)
72 KOG4277|consensus 99.6 2.5E-15 5.4E-20 103.3 5.6 78 48-127 41-118 (468)
73 PRK03147 thiol-disulfide oxido 99.6 2.8E-14 6.1E-19 92.5 10.3 91 35-127 46-158 (173)
74 PRK00293 dipZ thiol:disulfide 99.6 5.2E-14 1.1E-18 106.1 13.1 89 35-127 454-556 (571)
75 cd02964 TryX_like_family Trypa 99.6 1.2E-14 2.7E-19 90.6 8.1 77 48-124 15-116 (132)
76 PHA02125 thioredoxin-like prot 99.6 6.8E-15 1.5E-19 83.3 6.2 60 54-126 2-61 (75)
77 cd03010 TlpA_like_DsbE TlpA-li 99.6 1.3E-14 2.8E-19 89.8 8.0 81 42-128 17-121 (127)
78 TIGR02738 TrbB type-F conjugat 99.6 5E-14 1.1E-18 89.8 9.6 76 47-127 47-139 (153)
79 PRK15412 thiol:disulfide inter 99.6 7.5E-14 1.6E-18 91.7 10.2 75 48-128 66-163 (185)
80 cd02960 AGR Anterior Gradient 99.5 1.6E-14 3.4E-19 89.3 6.3 85 41-127 14-99 (130)
81 TIGR02187 GlrX_arch Glutaredox 99.5 1.8E-14 3.9E-19 96.7 6.8 82 42-127 12-97 (215)
82 cd02966 TlpA_like_family TlpA- 99.5 1.1E-13 2.3E-18 83.2 8.0 86 39-126 8-116 (116)
83 cd02973 TRX_GRX_like Thioredox 99.5 6.4E-14 1.4E-18 77.4 6.4 60 53-119 2-61 (67)
84 TIGR02187 GlrX_arch Glutaredox 99.5 9.3E-14 2E-18 93.3 8.0 78 37-119 119-197 (215)
85 KOG0191|consensus 99.5 8.5E-14 1.8E-18 100.7 8.3 87 36-126 32-119 (383)
86 cd03012 TlpA_like_DipZ_like Tl 99.5 1.2E-13 2.6E-18 85.4 7.9 77 49-127 22-125 (126)
87 COG2143 Thioredoxin-related pr 99.5 2E-13 4.4E-18 85.5 8.3 87 42-128 34-136 (182)
88 TIGR00412 redox_disulf_2 small 99.5 1.2E-13 2.6E-18 78.3 6.3 58 55-121 3-60 (76)
89 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 2.1E-13 4.6E-18 83.7 7.9 85 37-127 7-112 (123)
90 cd02967 mauD Methylamine utili 99.5 5.6E-13 1.2E-17 80.8 7.8 70 49-121 20-109 (114)
91 KOG1731|consensus 99.5 1.2E-13 2.5E-18 101.6 5.5 86 31-116 37-124 (606)
92 TIGR02740 TraF-like TraF-like 99.4 7.5E-13 1.6E-17 91.6 8.2 69 49-122 165-244 (271)
93 PF13899 Thioredoxin_7: Thiore 99.4 8.5E-13 1.8E-17 75.8 6.7 72 40-116 7-81 (82)
94 PF08534 Redoxin: Redoxin; In 99.4 1.2E-12 2.7E-17 82.7 8.0 88 38-127 16-134 (146)
95 TIGR00385 dsbE periplasmic pro 99.4 9.4E-13 2E-17 85.7 7.6 74 48-127 61-157 (173)
96 PRK11509 hydrogenase-1 operon 99.4 1.8E-12 3.8E-17 80.2 8.1 91 34-127 18-110 (132)
97 PLN02919 haloacid dehalogenase 99.4 1.7E-12 3.7E-17 103.6 8.4 77 49-127 419-522 (1057)
98 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 2.2E-12 4.8E-17 75.2 6.4 66 50-122 12-77 (89)
99 cd02958 UAS UAS family; UAS is 99.4 1.8E-12 3.8E-17 78.9 5.9 82 43-127 10-97 (114)
100 COG4232 Thiol:disulfide interc 99.3 4E-12 8.6E-17 94.2 8.0 90 36-127 457-554 (569)
101 KOG0914|consensus 99.3 1.3E-11 2.8E-16 81.4 8.3 92 31-125 122-222 (265)
102 KOG0191|consensus 99.3 1.2E-11 2.5E-16 89.6 8.6 91 34-126 145-237 (383)
103 PRK13728 conjugal transfer pro 99.3 2.1E-11 4.5E-16 79.4 7.8 69 54-127 73-157 (181)
104 TIGR02661 MauD methylamine deh 99.3 1.3E-11 2.8E-16 81.4 6.1 72 48-122 72-161 (189)
105 TIGR01626 ytfJ_HI0045 conserve 99.3 5.7E-11 1.2E-15 77.7 8.5 78 45-128 54-167 (184)
106 smart00594 UAS UAS domain. 99.2 3.9E-11 8.6E-16 73.9 7.1 89 39-127 12-111 (122)
107 KOG2501|consensus 99.2 3.2E-11 6.8E-16 76.2 6.6 75 48-122 31-130 (157)
108 PTZ00056 glutathione peroxidas 99.2 5E-11 1.1E-15 79.2 6.5 56 36-93 25-80 (199)
109 cd00340 GSH_Peroxidase Glutath 99.2 7.2E-11 1.6E-15 75.3 6.0 43 48-93 20-62 (152)
110 PLN02399 phospholipid hydroper 99.2 1.7E-10 3.7E-15 78.3 7.4 56 37-94 86-141 (236)
111 KOG0913|consensus 99.2 1.1E-11 2.4E-16 82.5 1.4 92 30-127 21-112 (248)
112 COG0526 TrxA Thiol-disulfide i 99.1 3E-10 6.5E-15 67.8 7.6 72 50-125 32-106 (127)
113 PLN02412 probable glutathione 99.1 1.8E-10 3.8E-15 74.6 6.6 44 49-94 28-71 (167)
114 PF02114 Phosducin: Phosducin; 99.1 3.6E-10 7.7E-15 78.0 8.4 88 33-126 125-216 (265)
115 cd03017 PRX_BCP Peroxiredoxin 99.1 2.5E-10 5.4E-15 71.5 6.8 77 49-127 22-129 (140)
116 PF03190 Thioredox_DsbH: Prote 99.1 8.1E-11 1.8E-15 75.2 4.5 90 29-122 16-117 (163)
117 cd02969 PRX_like1 Peroxiredoxi 99.1 5.7E-10 1.2E-14 72.4 7.7 73 48-122 23-124 (171)
118 PF00578 AhpC-TSA: AhpC/TSA fa 99.1 6.9E-10 1.5E-14 68.0 7.7 70 49-120 24-121 (124)
119 cd01659 TRX_superfamily Thiore 99.0 2.3E-09 4.9E-14 57.3 7.0 60 54-118 1-63 (69)
120 TIGR02540 gpx7 putative glutat 99.0 9.4E-10 2E-14 70.2 6.2 54 38-93 10-63 (153)
121 cd02970 PRX_like2 Peroxiredoxi 99.0 2.7E-09 5.8E-14 67.3 8.1 76 49-126 22-148 (149)
122 PF14595 Thioredoxin_9: Thiore 99.0 1.6E-09 3.4E-14 67.3 6.6 73 48-125 39-115 (129)
123 TIGR02180 GRX_euk Glutaredoxin 99.0 1.4E-09 3.1E-14 62.3 5.6 64 54-124 1-68 (84)
124 TIGR02200 GlrX_actino Glutared 99.0 1.3E-09 2.8E-14 61.4 5.3 61 54-125 2-67 (77)
125 PTZ00256 glutathione peroxidas 99.0 3E-09 6.5E-14 69.8 6.8 54 38-93 28-82 (183)
126 KOG1672|consensus 98.9 2.5E-09 5.5E-14 69.5 5.9 88 34-126 67-155 (211)
127 KOG3414|consensus 98.9 1.1E-08 2.4E-13 62.1 7.9 79 39-121 10-90 (142)
128 cd02971 PRX_family Peroxiredox 98.9 4.9E-09 1.1E-13 65.5 6.7 77 49-127 21-129 (140)
129 cd03018 PRX_AhpE_like Peroxire 98.9 5E-09 1.1E-13 66.2 6.7 75 51-127 29-133 (149)
130 cd03014 PRX_Atyp2cys Peroxired 98.9 6.1E-09 1.3E-13 65.5 6.6 74 49-126 25-128 (143)
131 PF06110 DUF953: Eukaryotic pr 98.9 1.4E-08 3E-13 62.0 7.5 69 48-119 17-100 (119)
132 PRK09437 bcp thioredoxin-depen 98.9 7.6E-09 1.6E-13 65.9 6.7 89 37-127 17-139 (154)
133 cd02968 SCO SCO (an acronym fo 98.9 5.4E-09 1.2E-13 65.5 5.9 46 49-94 21-68 (142)
134 cd03015 PRX_Typ2cys Peroxiredo 98.9 7.8E-09 1.7E-13 67.2 6.7 76 49-126 28-138 (173)
135 TIGR02196 GlrX_YruB Glutaredox 98.9 9.2E-09 2E-13 57.1 6.1 56 54-121 2-61 (74)
136 PRK00522 tpx lipid hydroperoxi 98.9 9.3E-09 2E-13 66.6 6.7 73 49-125 43-148 (167)
137 TIGR03137 AhpC peroxiredoxin. 98.9 1E-08 2.3E-13 67.5 6.6 74 49-124 30-135 (187)
138 PRK11200 grxA glutaredoxin 1; 98.8 1.7E-08 3.6E-13 58.2 6.0 66 53-124 2-72 (85)
139 KOG3425|consensus 98.8 3.8E-08 8.3E-13 59.3 7.5 73 41-116 13-103 (128)
140 PF07449 HyaE: Hydrogenase-1 e 98.8 2.7E-08 5.9E-13 59.5 5.7 91 32-126 8-100 (107)
141 PF02966 DIM1: Mitosis protein 98.7 2.6E-07 5.7E-12 56.7 9.4 78 39-121 7-87 (133)
142 PRK15000 peroxidase; Provision 98.7 6.1E-08 1.3E-12 64.5 6.6 76 49-126 33-143 (200)
143 PF13728 TraF: F plasmid trans 98.7 1E-07 2.2E-12 64.1 7.7 65 49-118 119-194 (215)
144 PF01216 Calsequestrin: Calseq 98.7 1.3E-07 2.9E-12 66.6 8.3 94 31-128 32-131 (383)
145 PRK10382 alkyl hydroperoxide r 98.7 1.1E-07 2.5E-12 62.6 7.2 74 49-124 30-135 (187)
146 KOG2603|consensus 98.7 2E-07 4.3E-12 64.8 8.5 85 31-116 38-134 (331)
147 PF00462 Glutaredoxin: Glutare 98.6 1.8E-07 3.9E-12 50.3 6.2 56 54-120 1-59 (60)
148 PF13192 Thioredoxin_3: Thiore 98.6 2.8E-07 6.1E-12 52.0 6.7 56 56-120 4-59 (76)
149 TIGR02183 GRXA Glutaredoxin, G 98.6 1.3E-07 2.9E-12 54.6 5.4 63 54-122 2-69 (86)
150 cd03419 GRX_GRXh_1_2_like Glut 98.6 1.5E-07 3.2E-12 53.6 5.4 62 54-124 2-67 (82)
151 cd02991 UAS_ETEA UAS family, E 98.6 7E-07 1.5E-11 54.5 7.7 74 48-127 15-99 (116)
152 TIGR03143 AhpF_homolog putativ 98.6 7.2E-07 1.6E-11 67.7 9.4 76 37-119 462-538 (555)
153 PRK13190 putative peroxiredoxi 98.5 3E-07 6.5E-12 61.3 6.3 71 49-121 26-130 (202)
154 PRK10954 periplasmic protein d 98.5 1.5E-06 3.2E-11 58.2 9.6 40 50-92 37-79 (207)
155 PHA03050 glutaredoxin; Provisi 98.5 4.4E-07 9.6E-12 54.7 6.2 74 43-124 6-83 (108)
156 PRK15317 alkyl hydroperoxide r 98.5 1.3E-06 2.9E-11 65.8 9.4 73 37-114 102-175 (517)
157 TIGR02190 GlrX-dom Glutaredoxi 98.5 3.3E-07 7.1E-12 52.1 4.3 65 49-124 5-71 (79)
158 KOG0911|consensus 98.5 1E-07 2.3E-12 63.4 2.5 76 47-127 14-89 (227)
159 PF11009 DUF2847: Protein of u 98.4 2.2E-06 4.7E-11 51.1 7.6 81 39-122 6-92 (105)
160 cd02976 NrdH NrdH-redoxin (Nrd 98.4 1.3E-06 2.7E-11 48.2 6.4 56 54-121 2-61 (73)
161 PTZ00137 2-Cys peroxiredoxin; 98.4 1.1E-06 2.3E-11 60.8 7.1 74 49-124 97-204 (261)
162 PRK13599 putative peroxiredoxi 98.4 9.9E-07 2.1E-11 59.4 6.4 73 49-123 27-134 (215)
163 TIGR02189 GlrX-like_plant Glut 98.4 8.5E-07 1.8E-11 52.6 5.1 62 54-124 10-75 (99)
164 PRK13191 putative peroxiredoxi 98.4 1.3E-06 2.7E-11 58.9 6.4 44 49-94 32-76 (215)
165 cd03016 PRX_1cys Peroxiredoxin 98.4 1.5E-06 3.2E-11 58.0 6.7 74 51-126 26-135 (203)
166 TIGR02181 GRX_bact Glutaredoxi 98.4 7.8E-07 1.7E-11 50.4 4.6 59 54-124 1-63 (79)
167 KOG3170|consensus 98.4 2.5E-06 5.5E-11 56.0 7.4 88 32-127 90-180 (240)
168 TIGR03140 AhpF alkyl hydropero 98.4 3.7E-06 8E-11 63.4 9.2 74 36-114 102-176 (515)
169 PRK10877 protein disulfide iso 98.4 1.6E-06 3.5E-11 59.0 6.7 71 49-124 106-217 (232)
170 cd03418 GRX_GRXb_1_3_like Glut 98.4 1.5E-06 3.3E-11 48.6 5.5 59 54-124 2-65 (75)
171 cd02066 GRX_family Glutaredoxi 98.4 1.7E-06 3.6E-11 47.5 5.6 59 54-124 2-64 (72)
172 PTZ00253 tryparedoxin peroxida 98.4 1.8E-06 4E-11 57.4 6.6 74 49-124 35-143 (199)
173 cd03020 DsbA_DsbC_DsbG DsbA fa 98.4 1.7E-06 3.8E-11 57.3 6.4 69 49-123 76-186 (197)
174 PRK13189 peroxiredoxin; Provis 98.3 2E-06 4.2E-11 58.2 6.6 71 49-121 34-139 (222)
175 TIGR02739 TraF type-F conjugat 98.3 2.3E-06 5E-11 58.9 6.9 64 50-116 150-221 (256)
176 cd03027 GRX_DEP Glutaredoxin ( 98.3 1.8E-06 4E-11 48.2 5.3 60 54-124 3-65 (73)
177 cd03023 DsbA_Com1_like DsbA fa 98.3 4.7E-06 1E-10 52.5 7.5 31 49-79 4-34 (154)
178 PRK13703 conjugal pilus assemb 98.3 3.2E-06 6.8E-11 57.9 6.8 64 50-116 143-214 (248)
179 PF13848 Thioredoxin_6: Thiore 98.3 1.3E-05 2.8E-10 52.1 9.5 81 32-116 76-159 (184)
180 TIGR02194 GlrX_NrdH Glutaredox 98.3 2.5E-06 5.5E-11 47.5 5.2 51 54-114 1-54 (72)
181 cd03029 GRX_hybridPRX5 Glutare 98.3 1.9E-06 4E-11 48.0 4.5 58 54-122 3-62 (72)
182 PRK10606 btuE putative glutath 98.2 2E-06 4.4E-11 56.5 4.8 56 36-94 11-66 (183)
183 TIGR00365 monothiol glutaredox 98.2 6.6E-06 1.4E-10 48.6 6.4 69 43-124 5-81 (97)
184 KOG3171|consensus 98.2 5.1E-06 1.1E-10 55.2 6.2 85 34-124 139-227 (273)
185 PRK11657 dsbG disulfide isomer 98.2 7.1E-06 1.5E-10 56.5 7.2 30 49-78 116-145 (251)
186 cd03019 DsbA_DsbA DsbA family, 98.2 1E-05 2.2E-10 52.4 6.9 33 49-81 14-46 (178)
187 PRK10329 glutaredoxin-like pro 98.1 1.2E-05 2.6E-10 45.9 6.0 59 54-124 3-64 (81)
188 PRK10638 glutaredoxin 3; Provi 98.1 9.2E-06 2E-10 46.5 5.1 60 54-124 4-66 (83)
189 PF13462 Thioredoxin_4: Thiore 98.1 4.3E-05 9.3E-10 48.7 8.4 43 48-93 10-54 (162)
190 COG0695 GrxC Glutaredoxin and 98.0 2.5E-05 5.4E-10 44.5 5.8 57 54-121 3-64 (80)
191 cd03028 GRX_PICOT_like Glutare 98.0 2.2E-05 4.8E-10 45.7 5.5 61 51-123 8-76 (90)
192 KOG1752|consensus 98.0 4.6E-05 1E-09 45.5 6.2 68 43-121 7-78 (104)
193 PF05768 DUF836: Glutaredoxin- 97.9 4.6E-05 9.9E-10 43.5 5.4 54 54-114 2-55 (81)
194 cd02972 DsbA_family DsbA famil 97.9 0.0001 2.2E-09 42.5 6.4 62 54-116 1-91 (98)
195 COG1331 Highly conserved prote 97.9 2.1E-05 4.6E-10 60.1 4.3 89 29-121 22-122 (667)
196 PF07912 ERp29_N: ERp29, N-ter 97.9 0.00068 1.5E-08 41.4 9.9 89 34-124 5-100 (126)
197 cd03072 PDI_b'_ERp44 PDIb' fam 97.8 0.00032 6.8E-09 42.4 7.8 75 36-116 2-81 (111)
198 PRK12759 bifunctional gluaredo 97.7 8.6E-05 1.9E-09 54.6 5.7 59 54-124 4-74 (410)
199 PRK10824 glutaredoxin-4; Provi 97.7 0.00014 3E-09 44.3 5.4 70 42-124 7-84 (115)
200 PTZ00062 glutaredoxin; Provisi 97.7 0.00019 4E-09 48.0 6.1 69 43-124 106-182 (204)
201 TIGR03143 AhpF_homolog putativ 97.6 0.00053 1.1E-08 52.4 8.5 72 50-126 365-439 (555)
202 cd02983 P5_C P5 family, C-term 97.5 0.0042 9.1E-08 38.6 10.2 81 34-117 3-90 (130)
203 cd03073 PDI_b'_ERp72_ERp57 PDI 97.3 0.0021 4.6E-08 38.8 6.8 74 37-116 3-85 (111)
204 cd02981 PDI_b_family Protein D 97.3 0.0042 9.1E-08 36.1 8.0 76 41-127 8-84 (97)
205 PF13743 Thioredoxin_5: Thiore 97.1 0.0033 7.2E-08 41.1 7.0 33 56-91 2-34 (176)
206 cd03031 GRX_GRX_like Glutaredo 97.0 0.0023 4.9E-08 40.7 5.3 58 54-122 2-72 (147)
207 COG1225 Bcp Peroxiredoxin [Pos 97.0 0.0012 2.6E-08 42.3 4.1 87 36-124 16-136 (157)
208 cd03067 PDI_b_PDIR_N PDIb fami 97.0 0.0082 1.8E-07 35.5 6.9 82 40-125 9-96 (112)
209 COG1999 Uncharacterized protei 96.9 0.015 3.3E-07 39.0 8.8 81 36-116 53-138 (207)
210 PF02630 SCO1-SenC: SCO1/SenC; 96.8 0.0055 1.2E-07 39.9 5.8 61 35-95 37-98 (174)
211 cd02978 KaiB_like KaiB-like fa 96.7 0.0073 1.6E-07 33.6 5.1 60 53-115 3-62 (72)
212 cd03060 GST_N_Omega_like GST_N 96.7 0.0074 1.6E-07 33.1 5.0 58 55-120 2-59 (71)
213 cd03013 PRX5_like Peroxiredoxi 96.6 0.0045 9.8E-08 39.6 4.2 45 49-94 28-74 (155)
214 TIGR02654 circ_KaiB circadian 96.5 0.012 2.7E-07 33.9 5.2 74 51-128 3-76 (87)
215 PRK09301 circadian clock prote 96.5 0.013 2.7E-07 34.9 5.2 75 50-128 5-79 (103)
216 COG1651 DsbG Protein-disulfide 96.1 0.042 9.1E-07 37.5 7.3 30 51-80 85-114 (244)
217 PF00837 T4_deiodinase: Iodoth 95.8 0.013 2.9E-07 39.9 3.4 60 31-93 80-142 (237)
218 cd03037 GST_N_GRX2 GST_N famil 95.6 0.026 5.7E-07 30.8 3.7 57 55-120 2-58 (71)
219 PF13417 GST_N_3: Glutathione 95.4 0.085 1.8E-06 29.2 5.5 57 56-121 1-57 (75)
220 cd03059 GST_N_SspA GST_N famil 95.2 0.058 1.3E-06 29.4 4.2 52 55-113 2-53 (73)
221 COG4545 Glutaredoxin-related p 95.1 0.041 8.8E-07 30.7 3.3 57 55-121 5-76 (85)
222 cd03040 GST_N_mPGES2 GST_N fam 94.9 0.071 1.5E-06 29.5 4.1 53 54-115 2-54 (77)
223 cd03041 GST_N_2GST_N GST_N fam 94.9 0.06 1.3E-06 30.0 3.8 54 54-114 2-56 (77)
224 cd00570 GST_N_family Glutathio 94.8 0.067 1.5E-06 28.2 3.8 53 55-114 2-55 (71)
225 cd02977 ArsC_family Arsenate R 94.7 0.037 8.1E-07 32.9 2.7 33 54-95 1-33 (105)
226 PF06053 DUF929: Domain of unk 94.7 0.47 1E-05 32.8 8.3 36 46-81 54-89 (249)
227 PHA03075 glutaredoxin-like pro 94.4 0.079 1.7E-06 32.1 3.6 30 51-80 2-31 (123)
228 cd03051 GST_N_GTT2_like GST_N 94.1 0.15 3.3E-06 27.6 4.3 53 55-114 2-57 (74)
229 PF13848 Thioredoxin_6: Thiore 93.9 0.31 6.8E-06 31.3 6.1 52 68-127 8-60 (184)
230 cd02974 AhpF_NTD_N Alkyl hydro 93.8 0.71 1.5E-05 27.0 6.8 60 50-126 18-79 (94)
231 cd03036 ArsC_like Arsenate Red 93.7 0.12 2.7E-06 31.1 3.6 33 55-96 2-34 (111)
232 PF07689 KaiB: KaiB domain; I 93.7 0.028 6.1E-07 32.1 0.7 56 56-114 2-57 (82)
233 TIGR01617 arsC_related transcr 93.3 0.13 2.9E-06 31.2 3.3 33 55-96 2-34 (117)
234 PRK01655 spxA transcriptional 93.3 0.14 3.1E-06 31.8 3.5 34 54-96 2-35 (131)
235 PF09673 TrbC_Ftype: Type-F co 93.1 0.99 2.1E-05 27.3 6.9 45 67-117 36-80 (113)
236 cd03055 GST_N_Omega GST_N fami 93.1 0.39 8.5E-06 27.5 4.9 55 53-114 18-72 (89)
237 COG3634 AhpF Alkyl hydroperoxi 92.6 1.4 3.1E-05 32.4 8.0 77 37-120 102-179 (520)
238 cd03045 GST_N_Delta_Epsilon GS 92.5 0.34 7.5E-06 26.3 4.1 53 55-114 2-57 (74)
239 cd03035 ArsC_Yffb Arsenate Red 92.2 0.27 5.8E-06 29.3 3.6 22 54-75 1-22 (105)
240 cd03032 ArsC_Spx Arsenate Redu 91.4 0.39 8.4E-06 29.0 3.7 21 54-74 2-22 (115)
241 KOG2640|consensus 91.2 0.063 1.4E-06 38.0 0.1 74 48-126 74-147 (319)
242 PRK12559 transcriptional regul 91.1 0.38 8.2E-06 29.9 3.5 21 54-74 2-22 (131)
243 PF06491 Disulph_isomer: Disul 90.7 2.2 4.8E-05 26.6 6.4 80 39-121 23-108 (136)
244 KOG2507|consensus 90.6 1.5 3.3E-05 32.6 6.5 79 48-126 16-96 (506)
245 TIGR02742 TrbC_Ftype type-F co 90.1 0.24 5.2E-06 30.8 1.9 22 98-119 61-82 (130)
246 PF00255 GSHPx: Glutathione pe 89.9 1.2 2.7E-05 26.8 4.8 58 35-95 6-63 (108)
247 cd03066 PDI_b_Calsequestrin_mi 89.9 2.6 5.7E-05 24.7 8.6 77 39-126 7-86 (102)
248 PF04592 SelP_N: Selenoprotein 89.6 0.8 1.7E-05 31.4 4.2 49 48-96 24-73 (238)
249 cd03052 GST_N_GDAP1 GST_N fami 89.5 1.2 2.7E-05 24.4 4.4 57 55-120 2-61 (73)
250 KOG2244|consensus 89.5 0.23 5E-06 38.1 1.7 78 34-115 96-184 (786)
251 PRK13344 spxA transcriptional 89.2 0.97 2.1E-05 28.1 4.2 34 54-96 2-35 (132)
252 PF01323 DSBA: DSBA-like thior 89.1 1.4 3.1E-05 28.5 5.2 38 53-92 1-38 (193)
253 COG0278 Glutaredoxin-related p 88.7 1.5 3.3E-05 26.0 4.4 73 41-122 6-83 (105)
254 PRK15317 alkyl hydroperoxide r 88.6 3.6 7.8E-05 31.4 7.6 63 48-126 16-79 (517)
255 cd03074 PDI_b'_Calsequestrin_C 88.2 3.8 8.3E-05 24.7 5.9 78 37-116 5-89 (120)
256 TIGR03140 AhpF alkyl hydropero 88.1 3.9 8.5E-05 31.2 7.5 64 48-126 16-80 (515)
257 cd03056 GST_N_4 GST_N family, 87.3 2.2 4.8E-05 22.8 4.5 53 55-114 2-57 (73)
258 cd03069 PDI_b_ERp57 PDIb famil 87.2 4.3 9.4E-05 23.9 7.7 65 39-115 7-71 (104)
259 cd03025 DsbA_FrnE_like DsbA fa 85.8 1.5 3.3E-05 28.5 3.9 27 54-80 3-29 (193)
260 PF04134 DUF393: Protein of un 85.0 0.97 2.1E-05 27.0 2.4 57 57-119 2-61 (114)
261 cd03053 GST_N_Phi GST_N family 84.3 4.6 0.0001 21.8 4.9 53 54-113 2-57 (76)
262 cd03049 GST_N_3 GST_N family, 83.7 5.1 0.00011 21.5 5.3 59 55-119 2-60 (73)
263 cd03058 GST_N_Tau GST_N family 83.6 4.2 9.1E-05 22.0 4.5 55 55-119 2-58 (74)
264 PF06764 DUF1223: Protein of u 82.4 12 0.00027 25.1 7.0 58 56-120 4-80 (202)
265 cd02990 UAS_FAF1 UAS family, F 82.4 9.2 0.0002 24.0 6.0 64 47-116 18-104 (136)
266 TIGR03521 GldG gliding-associa 81.2 24 0.00051 27.5 10.4 79 31-110 28-116 (552)
267 PRK09481 sspA stringent starva 80.7 5.6 0.00012 26.4 5.0 60 51-119 8-67 (211)
268 COG3011 Predicted thiol-disulf 80.6 8.4 0.00018 24.3 5.3 67 48-120 4-72 (137)
269 PF11287 DUF3088: Protein of u 80.4 3 6.5E-05 25.2 3.2 52 61-116 23-76 (112)
270 cd03030 GRX_SH3BGR Glutaredoxi 80.2 9.3 0.0002 22.2 5.2 36 86-124 31-74 (92)
271 PRK13730 conjugal transfer pil 80.2 2 4.3E-05 28.9 2.6 20 98-117 152-171 (212)
272 PF10865 DUF2703: Domain of un 79.6 7.2 0.00016 24.0 4.8 58 61-124 14-75 (120)
273 COG0386 BtuE Glutathione perox 79.6 6.4 0.00014 25.4 4.6 58 34-94 9-66 (162)
274 PF09822 ABC_transp_aux: ABC-t 79.6 18 0.00039 25.1 8.5 77 33-110 7-90 (271)
275 cd03033 ArsC_15kD Arsenate Red 77.8 3.2 6.9E-05 25.1 2.8 22 54-75 2-23 (113)
276 KOG0912|consensus 77.0 12 0.00025 27.1 5.7 76 35-114 212-290 (375)
277 cd03025 DsbA_FrnE_like DsbA fa 76.5 2.6 5.6E-05 27.4 2.4 22 98-119 159-180 (193)
278 cd03061 GST_N_CLIC GST_N famil 76.2 6.8 0.00015 22.8 3.8 47 60-113 20-66 (91)
279 PF01323 DSBA: DSBA-like thior 76.2 2.7 5.8E-05 27.2 2.4 20 98-119 157-176 (193)
280 COG3019 Predicted metal-bindin 74.7 9.5 0.00021 24.2 4.3 53 52-114 26-82 (149)
281 KOG2792|consensus 74.5 11 0.00024 26.5 5.0 61 36-96 125-189 (280)
282 KOG0855|consensus 74.5 4.1 8.8E-05 26.7 2.8 31 48-78 88-119 (211)
283 COG0450 AhpC Peroxiredoxin [Po 72.2 7.1 0.00015 26.1 3.5 43 50-92 33-76 (194)
284 KOG1651|consensus 72.2 13 0.00028 24.3 4.6 58 35-94 19-76 (171)
285 PRK13684 Ycf48-like protein; P 70.1 6.9 0.00015 28.2 3.5 38 7-44 1-38 (334)
286 TIGR00014 arsC arsenate reduct 66.9 6.2 0.00013 23.8 2.3 21 55-75 2-22 (114)
287 cd03034 ArsC_ArsC Arsenate Red 64.4 7.5 0.00016 23.3 2.3 20 55-74 2-21 (112)
288 PRK10387 glutaredoxin 2; Provi 63.5 17 0.00038 23.8 4.2 56 56-120 3-58 (210)
289 PF13778 DUF4174: Domain of un 62.7 32 0.0007 20.8 7.0 77 49-127 9-98 (118)
290 cd03050 GST_N_Theta GST_N fami 61.9 23 0.00051 19.0 4.7 56 55-119 2-60 (76)
291 COG1393 ArsC Arsenate reductas 60.8 12 0.00025 22.9 2.7 22 54-75 3-24 (117)
292 KOG0852|consensus 60.5 16 0.00035 24.1 3.4 47 48-94 31-78 (196)
293 TIGR02182 GRXB Glutaredoxin, G 59.8 21 0.00046 23.7 4.1 56 56-120 2-57 (209)
294 PRK00366 ispG 4-hydroxy-3-meth 59.2 20 0.00044 26.3 4.1 65 62-126 271-342 (360)
295 KOG1422|consensus 59.0 32 0.0007 23.4 4.7 46 61-114 20-66 (221)
296 COG3531 Predicted protein-disu 55.8 10 0.00022 25.5 1.9 23 98-120 164-186 (212)
297 PF11072 DUF2859: Protein of u 55.7 16 0.00036 23.1 2.8 18 97-114 120-137 (142)
298 PF05988 DUF899: Bacterial pro 55.6 63 0.0014 22.0 5.8 34 59-94 82-115 (211)
299 cd03044 GST_N_EF1Bgamma GST_N 55.5 32 0.00069 18.5 3.9 52 56-114 3-56 (75)
300 TIGR00862 O-ClC intracellular 55.4 60 0.0013 22.3 5.8 48 60-114 17-64 (236)
301 cd03022 DsbA_HCCA_Iso DsbA fam 55.2 28 0.00061 22.4 4.1 25 56-80 3-27 (192)
302 PRK15113 glutathione S-transfe 55.0 57 0.0012 21.6 5.6 57 51-114 3-64 (214)
303 PF07511 DUF1525: Protein of u 52.8 12 0.00025 22.9 1.7 14 102-115 77-90 (114)
304 KOG4277|consensus 51.9 91 0.002 22.7 6.3 68 40-120 143-212 (468)
305 PF00879 Defensin_propep: Defe 51.5 27 0.00059 18.1 2.7 13 48-60 37-49 (52)
306 PF01216 Calsequestrin: Calseq 51.2 99 0.0022 22.9 7.2 81 34-116 250-337 (383)
307 PF14097 SpoVAE: Stage V sporu 51.1 19 0.00042 23.6 2.6 34 29-62 29-64 (180)
308 TIGR03765 ICE_PFL_4695 integra 51.1 20 0.00043 21.5 2.5 17 98-114 83-99 (105)
309 COG0821 gcpE 1-hydroxy-2-methy 50.9 13 0.00028 27.1 2.0 66 62-127 264-337 (361)
310 COG2761 FrnE Predicted dithiol 50.5 34 0.00073 23.5 3.8 30 52-81 5-35 (225)
311 cd07973 Spt4 Transcription elo 50.5 4.3 9.3E-05 24.0 -0.4 60 57-123 18-86 (98)
312 PRK10853 putative reductase; P 50.5 19 0.00042 21.8 2.5 21 54-74 2-22 (118)
313 COG5494 Predicted thioredoxin/ 50.1 61 0.0013 22.3 4.9 55 56-120 15-69 (265)
314 TIGR03757 conj_TIGR03757 integ 49.0 15 0.00032 22.4 1.8 13 103-115 79-91 (113)
315 TIGR01616 nitro_assoc nitrogen 48.0 29 0.00063 21.4 3.0 23 53-75 2-24 (126)
316 cd06537 CIDE_N_B CIDE_N domain 47.9 21 0.00045 20.4 2.1 24 99-122 29-52 (81)
317 COG5429 Uncharacterized secret 47.7 83 0.0018 22.0 5.3 39 51-94 42-80 (261)
318 cd03068 PDI_b_ERp72 PDIb famil 47.5 58 0.0013 19.2 7.1 67 39-116 7-74 (107)
319 KOG0868|consensus 47.0 6 0.00013 26.2 -0.1 61 49-120 3-67 (217)
320 PF03227 GILT: Gamma interfero 46.5 61 0.0013 19.2 4.3 21 54-74 3-24 (108)
321 cd06538 CIDE_N_FSP27 CIDE_N do 45.2 26 0.00056 19.9 2.2 24 99-122 29-52 (79)
322 smart00053 DYNc Dynamin, GTPas 44.3 1.1E+02 0.0023 21.3 7.0 67 50-116 112-200 (240)
323 KOG0911|consensus 44.2 72 0.0016 22.0 4.6 63 49-121 137-205 (227)
324 PRK10026 arsenate reductase; P 43.7 33 0.00071 21.7 2.8 22 54-75 4-25 (141)
325 cd03042 GST_N_Zeta GST_N famil 43.1 51 0.0011 17.2 4.0 52 56-114 3-57 (73)
326 cd03076 GST_N_Pi GST_N family, 42.8 54 0.0012 17.5 3.7 53 55-114 3-55 (73)
327 PLN02473 glutathione S-transfe 42.7 72 0.0016 20.9 4.6 57 54-119 3-62 (214)
328 PLN02817 glutathione dehydroge 42.7 53 0.0012 22.9 4.0 47 61-114 72-118 (265)
329 PF12617 LdpA_C: Iron-Sulfur b 42.3 49 0.0011 22.0 3.5 69 52-126 8-82 (183)
330 PLN02378 glutathione S-transfe 40.9 56 0.0012 21.7 3.8 47 60-113 18-64 (213)
331 cd06539 CIDE_N_A CIDE_N domain 40.7 33 0.00072 19.4 2.2 25 98-122 28-53 (78)
332 PF03960 ArsC: ArsC family; I 39.6 28 0.00061 20.6 2.0 31 57-96 1-31 (110)
333 PF10185 Mesd: Chaperone for w 39.3 1.1E+02 0.0023 19.9 5.9 57 40-96 52-108 (158)
334 cd03024 DsbA_FrnE DsbA family, 38.4 57 0.0012 21.2 3.5 37 56-92 3-40 (201)
335 PF13409 GST_N_2: Glutathione 38.3 65 0.0014 17.1 4.3 53 61-121 1-57 (70)
336 TIGR03759 conj_TIGR03759 integ 38.1 1.3E+02 0.0027 20.4 5.1 39 48-93 106-144 (200)
337 PRK13617 psbV cytochrome c-550 38.0 22 0.00049 23.2 1.5 18 59-76 67-93 (170)
338 PF15379 DUF4606: Domain of un 36.1 32 0.0007 20.5 1.8 17 59-75 31-47 (104)
339 TIGR00612 ispG_gcpE 1-hydroxy- 35.4 85 0.0018 23.1 4.1 65 62-126 262-334 (346)
340 cd03021 DsbA_GSTK DsbA family, 35.4 1.1E+02 0.0024 20.3 4.6 38 53-93 2-39 (209)
341 cd03039 GST_N_Sigma_like GST_N 35.2 41 0.00089 17.8 2.1 52 56-114 3-55 (72)
342 TIGR02652 conserved hypothetic 35.1 16 0.00034 23.2 0.4 14 61-74 11-24 (163)
343 PF09654 DUF2396: Protein of u 35.0 15 0.00033 23.1 0.4 14 61-74 8-21 (161)
344 PF04908 SH3BGR: SH3-binding, 34.2 77 0.0017 18.7 3.2 38 57-96 5-42 (99)
345 COG4752 Uncharacterized protei 32.9 54 0.0012 21.1 2.5 25 41-65 123-148 (190)
346 PF09936 Methyltrn_RNA_4: SAM- 32.8 50 0.0011 22.0 2.4 25 38-62 119-144 (185)
347 TIGR02743 TraW type-F conjugat 32.8 35 0.00077 23.0 1.8 22 98-120 175-196 (202)
348 COG2077 Tpx Peroxiredoxin [Pos 32.5 72 0.0016 20.6 3.0 33 49-81 44-76 (158)
349 PF11238 DUF3039: Protein of u 30.7 22 0.00047 18.9 0.4 12 60-71 45-56 (58)
350 PRK13738 conjugal transfer pil 30.4 33 0.00071 23.3 1.3 23 98-120 173-196 (209)
351 PF14639 YqgF: Holliday-juncti 29.9 90 0.0019 19.9 3.2 49 43-92 55-105 (150)
352 cd03038 GST_N_etherase_LigE GS 29.8 96 0.0021 16.9 3.1 48 59-114 13-63 (84)
353 KOG1364|consensus 29.7 88 0.0019 23.1 3.4 40 86-126 133-174 (356)
354 COG0266 Nei Formamidopyrimidin 29.5 14 0.0003 26.1 -0.5 8 60-67 266-273 (273)
355 PRK14811 formamidopyrimidine-D 29.4 11 0.00025 26.4 -1.0 11 60-70 256-266 (269)
356 PF07700 HNOB: Heme NO binding 29.1 1.6E+02 0.0035 18.9 4.6 44 49-94 126-169 (171)
357 cd01615 CIDE_N CIDE_N domain, 28.3 68 0.0015 18.1 2.2 23 99-121 29-52 (78)
358 cd05855 Ig_TrkB_d5 Fifth domai 27.8 52 0.0011 18.3 1.7 15 108-122 11-25 (79)
359 PF08806 Sep15_SelM: Sep15/Sel 27.5 42 0.00091 18.9 1.3 22 103-124 36-58 (78)
360 PF09363 XFP_C: XFP C-terminal 27.2 54 0.0012 22.2 1.9 29 32-60 81-109 (203)
361 COG3531 Predicted protein-disu 26.9 70 0.0015 21.7 2.4 27 53-79 3-29 (212)
362 PF06637 PV-1: PV-1 protein (P 26.8 87 0.0019 23.4 3.0 16 3-18 20-35 (442)
363 smart00266 CAD Domains present 26.2 82 0.0018 17.6 2.2 24 99-122 27-51 (74)
364 PF07788 DUF1626: Protein of u 25.8 1.3E+02 0.0028 16.6 5.5 61 47-107 9-70 (70)
365 COG5661 Predicted secreted Zn- 25.6 1.2E+02 0.0026 20.3 3.3 17 39-55 43-59 (210)
366 PF06122 TraH: Conjugative rel 25.3 50 0.0011 24.3 1.7 23 59-81 94-116 (361)
367 KOG2990|consensus 25.2 57 0.0012 23.3 1.8 21 50-70 40-63 (317)
368 COG0625 Gst Glutathione S-tran 25.2 1E+02 0.0022 20.2 3.1 52 56-114 3-56 (211)
369 KOG4357|consensus 24.7 1.8E+02 0.004 18.1 3.8 54 41-94 55-114 (164)
370 cd03054 GST_N_Metaxin GST_N fa 24.5 59 0.0013 17.2 1.5 15 60-74 14-28 (72)
371 cd03048 GST_N_Ure2p_like GST_N 24.4 1.3E+02 0.0028 16.2 3.8 51 56-114 4-57 (81)
372 KOG0854|consensus 24.3 1.2E+02 0.0026 20.3 3.1 43 50-94 31-75 (224)
373 KOG0833|consensus 24.3 44 0.00095 22.0 1.1 17 59-75 102-118 (173)
374 PF04551 GcpE: GcpE protein; 23.8 61 0.0013 24.0 1.8 63 62-124 271-341 (359)
375 PRK04011 peptide chain release 23.2 1.7E+02 0.0037 22.1 4.1 35 70-105 367-401 (411)
376 KOG4498|consensus 23.1 1.8E+02 0.0038 19.6 3.7 46 45-92 46-91 (197)
377 TIGR01672 AphA HAD superfamily 22.9 2.6E+02 0.0057 19.2 5.2 25 33-57 44-68 (237)
378 PRK01103 formamidopyrimidine/5 22.9 20 0.00043 25.2 -0.7 8 60-67 266-273 (274)
379 cd06536 CIDE_N_ICAD CIDE_N dom 22.8 94 0.002 17.7 2.1 24 99-122 29-55 (80)
380 PRK14810 formamidopyrimidine-D 22.7 21 0.00045 25.1 -0.7 8 60-67 265-272 (272)
381 cd05863 Ig2_VEGFR-3 Second imm 22.4 75 0.0016 16.9 1.7 15 108-122 11-25 (67)
382 PF09590 Env-gp36: Lentivirus 22.2 1.9E+02 0.0041 22.8 4.1 23 48-70 184-206 (591)
383 COG4808 Uncharacterized protei 21.9 1.4E+02 0.003 19.0 2.9 23 9-31 2-24 (152)
384 COG5273 Uncharacterized protei 21.8 54 0.0012 23.6 1.2 16 56-71 106-121 (309)
385 PRK06393 rpoE DNA-directed RNA 21.7 49 0.0011 18.0 0.8 44 59-115 17-60 (64)
386 KOG3160|consensus 21.7 72 0.0016 21.8 1.8 28 49-76 38-66 (220)
387 PRK13620 psbV cytochrome c-550 21.3 26 0.00057 23.7 -0.4 8 59-66 112-119 (215)
388 cd02067 B12-binding B12 bindin 21.0 1.9E+02 0.0042 17.0 4.0 41 38-78 37-77 (119)
389 COG4604 CeuD ABC-type enteroch 21.0 1.9E+02 0.0042 20.0 3.6 30 62-94 168-197 (252)
390 PF08168 NUC205: NUC205 domain 20.5 60 0.0013 16.2 0.9 24 41-64 6-29 (44)
391 PRK11752 putative S-transferas 20.2 3.1E+02 0.0067 19.0 5.4 58 54-114 45-106 (264)
392 COG2093 DNA-directed RNA polym 20.2 38 0.00082 18.3 0.2 15 91-107 40-54 (64)
No 1
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=1.6e-24 Score=129.53 Aligned_cols=90 Identities=31% Similarity=0.702 Sum_probs=84.3
Q ss_pred ceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
++.+++.++|++.+.++++++|.||++||++|+.+.|.++++++.+.+. +.++.+|++++ +.++++++++++||++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~-~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD-RMLCRSQGVNSYPSLY 77 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc-HHHHHHcCCCccCEEE
Confidence 5778999999999988899999999999999999999999999998764 99999999999 9999999999999999
Q ss_pred EEeCCccccccccc
Q psy9104 114 IFRNGQVSKAKKTE 127 (128)
Q Consensus 114 ~~~~g~~~~~~~g~ 127 (128)
+|++|+.+.+|.|.
T Consensus 78 ~~~~g~~~~~~~G~ 91 (101)
T cd03003 78 VFPSGMNPEKYYGD 91 (101)
T ss_pred EEcCCCCcccCCCC
Confidence 99999999999885
No 2
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=2e-24 Score=131.14 Aligned_cols=93 Identities=23% Similarity=0.488 Sum_probs=85.2
Q ss_pred CCCceEEcChhhHHHh---hccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhh-hhcCC
Q psy9104 31 DESSVLDLGDSDFEAV---INQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC-NKHGV 106 (128)
Q Consensus 31 ~~~~~~~~~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~-~~~~v 106 (128)
..+++.+++.++|++. ++++++++|.||++||++|+.+.|.++++++.+++. +.++.||++++ ..++ ++|+|
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~-~~l~~~~~~I 82 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP-QGKCRKQKHF 82 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC-hHHHHHhcCC
Confidence 4567999999999987 489999999999999999999999999999998764 99999999999 8888 68999
Q ss_pred CCCCEEEEEeCCccccccccc
Q psy9104 107 SGYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 107 ~~~Pt~~~~~~g~~~~~~~g~ 127 (128)
+++||+.+|++|+...+|.|.
T Consensus 83 ~~~PTl~lf~~g~~~~~y~G~ 103 (113)
T cd03006 83 FYFPVIHLYYRSRGPIEYKGP 103 (113)
T ss_pred cccCEEEEEECCccceEEeCC
Confidence 999999999999988899886
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.91 E-value=5.7e-24 Score=128.51 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=77.1
Q ss_pred hhhHHHhhc--cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeC
Q psy9104 40 DSDFEAVIN--QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRN 117 (128)
Q Consensus 40 ~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~ 117 (128)
.++|++.+. .+++++|.|||+||++|+.+.|.+++++.++++. +.|+.||++++ ++++++|+|+++||+++|++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~-~~la~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEV-PDFNKMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCC-HHHHHHcCCCCCCEEEEEEC
Confidence 467788873 6889999999999999999999999999998765 89999999999 99999999999999999999
Q ss_pred Cccccccccc
Q psy9104 118 GQVSKAKKTE 127 (128)
Q Consensus 118 g~~~~~~~g~ 127 (128)
|+.+.+..|.
T Consensus 78 G~~v~~~~G~ 87 (114)
T cd02954 78 NKHMKIDLGT 87 (114)
T ss_pred CEEEEEEcCC
Confidence 9999988774
No 4
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.91 E-value=3.5e-23 Score=131.52 Aligned_cols=94 Identities=19% Similarity=0.375 Sum_probs=84.1
Q ss_pred CCCceEEcChhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCC
Q psy9104 31 DESSVLDLGDSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108 (128)
Q Consensus 31 ~~~~~~~~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~ 108 (128)
....+.++++++|++.+ +.+++++|.||++||++|+.+.|.++++++++.+. ++.++.||++++ ++++++|++++
T Consensus 26 ~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~-~~la~~~~V~~ 102 (152)
T cd02962 26 GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRF-PNVAEKFRVST 102 (152)
T ss_pred CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCC-HHHHHHcCcee
Confidence 35678999999999987 44579999999999999999999999999987642 399999999999 99999999988
Q ss_pred ------CCEEEEEeCCccccccccc
Q psy9104 109 ------YPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 109 ------~Pt~~~~~~g~~~~~~~g~ 127 (128)
+||+++|++|+++.++.|.
T Consensus 103 ~~~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 103 SPLSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred cCCcCCCCEEEEEECCEEEEEEecc
Confidence 9999999999999998873
No 5
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=2.3e-23 Score=125.01 Aligned_cols=90 Identities=36% Similarity=0.727 Sum_probs=82.2
Q ss_pred ceEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEE
Q psy9104 34 SVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112 (128)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~ 112 (128)
++.+++.++|++.+ .++++++|.||++||++|+.+.|.++++++.+.+. +.++.+|++++ +.++++++++++||+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~-~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY-ESLCQQANIRAYPTI 77 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch-HHHHHHcCCCcccEE
Confidence 56788999999987 66789999999999999999999999999998654 99999999999 999999999999999
Q ss_pred EEEeCC-ccccccccc
Q psy9104 113 KIFRNG-QVSKAKKTE 127 (128)
Q Consensus 113 ~~~~~g-~~~~~~~g~ 127 (128)
++|++| +.+.+|.|.
T Consensus 78 ~~~~~g~~~~~~~~G~ 93 (104)
T cd03004 78 RLYPGNASKYHSYNGW 93 (104)
T ss_pred EEEcCCCCCceEccCC
Confidence 999987 888899885
No 6
>KOG0910|consensus
Probab=99.90 E-value=6.8e-24 Score=132.06 Aligned_cols=90 Identities=31% Similarity=0.507 Sum_probs=84.0
Q ss_pred ceEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEE
Q psy9104 34 SVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112 (128)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~ 112 (128)
.+...+..+|++.+ +++.||+|.|||+||.+|+.+.|.++++..++.+. +.++.+|.+++ .+++.+|+|+++||+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~-~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH-PELAEDYEISAVPTV 119 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc-cchHhhcceeeeeEE
Confidence 45567788888887 99999999999999999999999999999999887 99999999999 999999999999999
Q ss_pred EEEeCCccccccccc
Q psy9104 113 KIFRNGQVSKAKKTE 127 (128)
Q Consensus 113 ~~~~~g~~~~~~~g~ 127 (128)
++|+||+.+.++.|.
T Consensus 120 lvfknGe~~d~~vG~ 134 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGA 134 (150)
T ss_pred EEEECCEEeeeeccc
Confidence 999999999888885
No 7
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.90 E-value=4.3e-23 Score=124.68 Aligned_cols=94 Identities=31% Similarity=0.655 Sum_probs=82.7
Q ss_pred CceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCC---CCeEEEEEeCCccchhhhhhcCCCCC
Q psy9104 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGAD---PPISFVKVDCTEAGKETCNKHGVSGY 109 (128)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~---~~v~~~~vd~~~~~~~~~~~~~v~~~ 109 (128)
+++.++++++|++.++.+++++|.||++||++|+++.|.++++++.+.+.. .++.++.+|++++ ++++++|+++++
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v~~~ 79 (108)
T cd02996 1 SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRINKY 79 (108)
T ss_pred CceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCCCcC
Confidence 357889999999999889999999999999999999999999988764321 2489999999999 999999999999
Q ss_pred CEEEEEeCCcc-ccccccc
Q psy9104 110 PTLKIFRNGQV-SKAKKTE 127 (128)
Q Consensus 110 Pt~~~~~~g~~-~~~~~g~ 127 (128)
||+++|++|++ ...|.|.
T Consensus 80 Ptl~~~~~g~~~~~~~~g~ 98 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQ 98 (108)
T ss_pred CEEEEEeCCcCcceecCCC
Confidence 99999999984 5777775
No 8
>PHA02278 thioredoxin-like protein
Probab=99.90 E-value=5.7e-23 Score=122.94 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=75.1
Q ss_pred ChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEEE
Q psy9104 39 GDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKIF 115 (128)
Q Consensus 39 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~~ 115 (128)
+..+|++.+.++++++|+|||+||++|+.+.|.+++++++.... +.++.+|++++ .+.++++|+|+++||+++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 35678888888999999999999999999999999998775433 67888999875 1579999999999999999
Q ss_pred eCCccccccccc
Q psy9104 116 RNGQVSKAKKTE 127 (128)
Q Consensus 116 ~~g~~~~~~~g~ 127 (128)
++|+.+.+..|.
T Consensus 80 k~G~~v~~~~G~ 91 (103)
T PHA02278 80 KDGQLVKKYEDQ 91 (103)
T ss_pred ECCEEEEEEeCC
Confidence 999999998884
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.89 E-value=1.4e-22 Score=120.85 Aligned_cols=89 Identities=45% Similarity=0.820 Sum_probs=83.2
Q ss_pred eEEcChhhHHHhhcc-CCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 35 VLDLGDSDFEAVINQ-HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 35 ~~~~~~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
+..++.++|++.+.+ +++++|+||++||++|+.+.|.+.++++.+.+ ++.++.+|++++ +.++++|+++++||++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~ 76 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDEN-KELCKKYGVKSVPTII 76 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTS-HHHHHHTTCSSSSEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhcc-chhhhccCCCCCCEEE
Confidence 357889999999965 99999999999999999999999999999886 399999999999 9999999999999999
Q ss_pred EEeCCccccccccc
Q psy9104 114 IFRNGQVSKAKKTE 127 (128)
Q Consensus 114 ~~~~g~~~~~~~g~ 127 (128)
++++|+...+|.|.
T Consensus 77 ~~~~g~~~~~~~g~ 90 (103)
T PF00085_consen 77 FFKNGKEVKRYNGP 90 (103)
T ss_dssp EEETTEEEEEEESS
T ss_pred EEECCcEEEEEECC
Confidence 99999999999886
No 10
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.89 E-value=1.2e-22 Score=121.84 Aligned_cols=85 Identities=14% Similarity=0.312 Sum_probs=75.1
Q ss_pred ChhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc--hhhhhhcCCCCCCEEEE
Q psy9104 39 GDSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG--KETCNKHGVSGYPTLKI 114 (128)
Q Consensus 39 ~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~v~~~Pt~~~ 114 (128)
+.++|++.+ +++++++|.||++||++|+.+.|.++++++++ .. +.++.+|.+++. ..++++|+++++||+++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~---v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-ND---VVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CC---CEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 467788888 34899999999999999999999999999988 32 899999998872 37899999999999999
Q ss_pred EeCCccccccccc
Q psy9104 115 FRNGQVSKAKKTE 127 (128)
Q Consensus 115 ~~~g~~~~~~~g~ 127 (128)
|++|+.+.++.|.
T Consensus 78 ~~~G~~v~~~~G~ 90 (103)
T cd02985 78 YKDGEKIHEEEGI 90 (103)
T ss_pred EeCCeEEEEEeCC
Confidence 9999999998885
No 11
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.89 E-value=7.9e-23 Score=122.83 Aligned_cols=92 Identities=10% Similarity=0.113 Sum_probs=86.3
Q ss_pred CCceEEcChhhHHHhhccCCcEEEEEEcCC--CHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCC
Q psy9104 32 ESSVLDLGDSDFEAVINQHETALVMFYAPW--CGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGY 109 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~ 109 (128)
..++.+++..+|++.++.+++++|.||++| ||+|+.+.|.++++++++++. +.++.+|.+++ +.++.+|+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~-~~la~~f~V~sI 84 (111)
T cd02965 9 RHGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE-QALAARFGVLRT 84 (111)
T ss_pred hcCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC-HHHHHHcCCCcC
Confidence 347889999999999999999999999997 999999999999999999876 89999999999 999999999999
Q ss_pred CEEEEEeCCccccccccc
Q psy9104 110 PTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 110 Pt~~~~~~g~~~~~~~g~ 127 (128)
||+++|++|+.+.++.|.
T Consensus 85 PTli~fkdGk~v~~~~G~ 102 (111)
T cd02965 85 PALLFFRDGRYVGVLAGI 102 (111)
T ss_pred CEEEEEECCEEEEEEeCc
Confidence 999999999999998885
No 12
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.89 E-value=3.5e-22 Score=119.22 Aligned_cols=92 Identities=39% Similarity=0.869 Sum_probs=82.6
Q ss_pred eEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
+.+++.++|++.+..+ +++|.||++||++|+.+.|.+.++++.+.+...++.++.+|++++ ..++++|+++++||+++
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhHhhcCCCcCCEEEE
Confidence 5688999999999655 599999999999999999999999999876335699999999999 89999999999999999
Q ss_pred EeCCcccccccccC
Q psy9104 115 FRNGQVSKAKKTEL 128 (128)
Q Consensus 115 ~~~g~~~~~~~g~~ 128 (128)
|++|+.+.+|.|+.
T Consensus 80 ~~~g~~~~~~~G~~ 93 (102)
T cd03005 80 FKDGEKVDKYKGTR 93 (102)
T ss_pred EeCCCeeeEeeCCC
Confidence 99999888898863
No 13
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-22 Score=138.52 Aligned_cols=94 Identities=32% Similarity=0.660 Sum_probs=88.0
Q ss_pred CCCceEEcChhhHHHhh---ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCC
Q psy9104 31 DESSVLDLGDSDFEAVI---NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS 107 (128)
Q Consensus 31 ~~~~~~~~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~ 107 (128)
...++.++|..+|++.+ ++..||+|+||+|||++|+.+.|.|+++..++.+. +.+++||+|++ +.++..|||+
T Consensus 21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~-p~vAaqfgiq 96 (304)
T COG3118 21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE-PMVAAQFGVQ 96 (304)
T ss_pred ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc-hhHHHHhCcC
Confidence 34558999999999998 66679999999999999999999999999999988 99999999999 9999999999
Q ss_pred CCCEEEEEeCCcccccccccC
Q psy9104 108 GYPTLKIFRNGQVSKAKKTEL 128 (128)
Q Consensus 108 ~~Pt~~~~~~g~~~~~~~g~~ 128 (128)
++||++.|.+|+++..|.|..
T Consensus 97 sIPtV~af~dGqpVdgF~G~q 117 (304)
T COG3118 97 SIPTVYAFKDGQPVDGFQGAQ 117 (304)
T ss_pred cCCeEEEeeCCcCccccCCCC
Confidence 999999999999999999863
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.88 E-value=4.5e-22 Score=121.76 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=82.4
Q ss_pred cCCCceEEcChhhHHHhh-ccCCcEEEEEEcCCCHH--Hh--hhcHHHHHHHHHh--cCCCCCeEEEEEeCCccchhhhh
Q psy9104 30 CDESSVLDLGDSDFEAVI-NQHETALVMFYAPWCGH--CK--KLKPEYEKAATDV--KGADPPISFVKVDCTEAGKETCN 102 (128)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~--C~--~~~~~l~~~~~~~--~~~~~~v~~~~vd~~~~~~~~~~ 102 (128)
...+.+..++.++|++.+ +.+.+++++||++||++ |+ .+.|.+.+.+.++ .+. +.+++||++++ +++++
T Consensus 6 ~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~---v~~~kVD~d~~-~~La~ 81 (120)
T cd03065 6 DGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG---IGFGLVDSKKD-AKVAK 81 (120)
T ss_pred CCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC---CEEEEEeCCCC-HHHHH
Confidence 355678899999999998 66678899999999976 99 8889999999987 544 99999999999 99999
Q ss_pred hcCCCCCCEEEEEeCCccccccccc
Q psy9104 103 KHGVSGYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 103 ~~~v~~~Pt~~~~~~g~~~~~~~g~ 127 (128)
+|+|+++||+++|++|+.+. |.|.
T Consensus 82 ~~~I~~iPTl~lfk~G~~v~-~~G~ 105 (120)
T cd03065 82 KLGLDEEDSIYVFKDDEVIE-YDGE 105 (120)
T ss_pred HcCCccccEEEEEECCEEEE-eeCC
Confidence 99999999999999999876 8885
No 15
>PRK09381 trxA thioredoxin; Provisional
Probab=99.88 E-value=9.8e-22 Score=118.86 Aligned_cols=92 Identities=30% Similarity=0.656 Sum_probs=83.6
Q ss_pred CCceEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCC
Q psy9104 32 ESSVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYP 110 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~P 110 (128)
.+.++++++++|++.+ +.+++++|.||++||++|+.+.|.++++++.+.+. +.++.+|++++ +.++++|+++.+|
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~-~~~~~~~~v~~~P 77 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN-PGTAPKYGIRGIP 77 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC-hhHHHhCCCCcCC
Confidence 4567889999999765 77899999999999999999999999999998754 89999999999 9999999999999
Q ss_pred EEEEEeCCccccccccc
Q psy9104 111 TLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 111 t~~~~~~g~~~~~~~g~ 127 (128)
|+++|++|+.+.++.|.
T Consensus 78 t~~~~~~G~~~~~~~G~ 94 (109)
T PRK09381 78 TLLLFKNGEVAATKVGA 94 (109)
T ss_pred EEEEEeCCeEEEEecCC
Confidence 99999999998888875
No 16
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.88 E-value=1.3e-21 Score=118.13 Aligned_cols=89 Identities=49% Similarity=0.954 Sum_probs=79.1
Q ss_pred eEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc--cchhhhhhcCCCCCCE
Q psy9104 35 VLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE--AGKETCNKHGVSGYPT 111 (128)
Q Consensus 35 ~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~v~~~Pt 111 (128)
+.+++.++|++.+ +.+++++|.||++||++|+.+.|.++++++.+.+. +.++.+|+++ + ..++++|+++++||
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~-~~~~~~~~i~~~Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKN-KPLCGKYGVQGFPT 77 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCcccc-HHHHHHcCCCcCCE
Confidence 5789999999998 66788999999999999999999999999998754 8899999998 6 88999999999999
Q ss_pred EEEEeCCc-----cccccccc
Q psy9104 112 LKIFRNGQ-----VSKAKKTE 127 (128)
Q Consensus 112 ~~~~~~g~-----~~~~~~g~ 127 (128)
+++|++|+ ....|.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~ 98 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGE 98 (109)
T ss_pred EEEEeCCCcccccccccccCc
Confidence 99999775 46677775
No 17
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.87 E-value=8e-22 Score=120.04 Aligned_cols=89 Identities=22% Similarity=0.349 Sum_probs=80.7
Q ss_pred ceEEcCh-hhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEE
Q psy9104 34 SVLDLGD-SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112 (128)
Q Consensus 34 ~~~~~~~-~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~ 112 (128)
.+.+++. ++|.+.+.++++++|+||++||++|+.+.|.++++++++++ +.|+.||.+++ +.++++|+++.+||+
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~-~~l~~~~~v~~vPt~ 79 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKA-PFLVEKLNIKVLPTV 79 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccC-HHHHHHCCCccCCEE
Confidence 4556666 88999998889999999999999999999999999988753 89999999999 999999999999999
Q ss_pred EEEeCCccccccccc
Q psy9104 113 KIFRNGQVSKAKKTE 127 (128)
Q Consensus 113 ~~~~~g~~~~~~~g~ 127 (128)
++|++|+.+.++.|.
T Consensus 80 l~fk~G~~v~~~~g~ 94 (113)
T cd02989 80 ILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEECCEEEEEEECc
Confidence 999999999888774
No 18
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.87 E-value=9.6e-22 Score=116.30 Aligned_cols=82 Identities=27% Similarity=0.504 Sum_probs=74.1
Q ss_pred hHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCc
Q psy9104 42 DFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 42 ~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
+|++.+ +++++++|.||++||++|+.+.+.++++++.+.+. +.++.+|++++ +.++++|+++++||++++++|+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQ-PQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCC-HHHHHHcCCCCCCEEEEEeCCE
Confidence 566666 34789999999999999999999999999998754 89999999999 9999999999999999999999
Q ss_pred cccccccc
Q psy9104 120 VSKAKKTE 127 (128)
Q Consensus 120 ~~~~~~g~ 127 (128)
.+.++.|.
T Consensus 78 ~~~~~~g~ 85 (96)
T cd02956 78 PVDGFQGA 85 (96)
T ss_pred EeeeecCC
Confidence 98888875
No 19
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.87 E-value=9.2e-22 Score=117.80 Aligned_cols=86 Identities=17% Similarity=0.445 Sum_probs=76.5
Q ss_pred cChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeC
Q psy9104 38 LGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRN 117 (128)
Q Consensus 38 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~ 117 (128)
.+.+++++.++++++++|+||++||++|+.+.|.++++++.+.+. .+.++.+|.+ + .+++++|+++++||+++|++
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~-~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-T-IDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-C-HHHHHHcCCCcCcEEEEEEC
Confidence 467889998888999999999999999999999999998887632 3789999999 5 78899999999999999999
Q ss_pred Cccccccccc
Q psy9104 118 GQVSKAKKTE 127 (128)
Q Consensus 118 g~~~~~~~g~ 127 (128)
|+.+.+..|.
T Consensus 81 g~~~~~~~G~ 90 (102)
T cd02948 81 GELVAVIRGA 90 (102)
T ss_pred CEEEEEEecC
Confidence 9988887773
No 20
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.87 E-value=2.4e-21 Score=130.00 Aligned_cols=92 Identities=32% Similarity=0.722 Sum_probs=82.5
Q ss_pred CCceEEcChhhHHHhhc-----cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCC
Q psy9104 32 ESSVLDLGDSDFEAVIN-----QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGV 106 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v 106 (128)
.+.+.++++++|++.+. .+++++|+||++||++|+.+.|.++++++++++. +.+..+|++++ ++++++|+|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~-~~l~~~~~I 104 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA-LNLAKRFAI 104 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc-HHHHHHcCC
Confidence 45689999999999873 2589999999999999999999999999998764 89999999999 999999999
Q ss_pred CCCCEEEEEeCCccccccccc
Q psy9104 107 SGYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 107 ~~~Pt~~~~~~g~~~~~~~g~ 127 (128)
+++||+++|++|+.+..+.|+
T Consensus 105 ~~~PTl~~f~~G~~v~~~~G~ 125 (224)
T PTZ00443 105 KGYPTLLLFDKGKMYQYEGGD 125 (224)
T ss_pred CcCCEEEEEECCEEEEeeCCC
Confidence 999999999999987766664
No 21
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=2.4e-21 Score=115.62 Aligned_cols=88 Identities=30% Similarity=0.542 Sum_probs=77.2
Q ss_pred ceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
++.+++.++|++.++. .++|.||++||++|+.+.|.++++++.... .++.+..+|++++ +.++++|+++++||++
T Consensus 2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~-~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQE-PGLSGRFFVTALPTIY 76 (101)
T ss_pred ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCC-HhHHHHcCCcccCEEE
Confidence 5788999999988743 378999999999999999999999987653 3499999999999 9999999999999999
Q ss_pred EEeCCccccccccc
Q psy9104 114 IFRNGQVSKAKKTE 127 (128)
Q Consensus 114 ~~~~g~~~~~~~g~ 127 (128)
++++|+ +.+|.|.
T Consensus 77 ~~~~g~-~~~~~G~ 89 (101)
T cd02994 77 HAKDGV-FRRYQGP 89 (101)
T ss_pred EeCCCC-EEEecCC
Confidence 999997 4778775
No 22
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.87 E-value=3.4e-21 Score=115.25 Aligned_cols=91 Identities=45% Similarity=0.851 Sum_probs=81.9
Q ss_pred eEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc--cchhhhhhcCCCCCCEE
Q psy9104 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE--AGKETCNKHGVSGYPTL 112 (128)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~v~~~Pt~ 112 (128)
+.++++.++++.++++++++|.||++||++|+.+.+.+.++++.+.. ...+.++.+|+++ + +.++++++++++||+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~-~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTKPEH-DALKEEYNVKGFPTF 79 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCCCcc-HHHHHhCCCccccEE
Confidence 56788899999998888999999999999999999999999988864 2348899999998 6 899999999999999
Q ss_pred EEEeCCccccccccc
Q psy9104 113 KIFRNGQVSKAKKTE 127 (128)
Q Consensus 113 ~~~~~g~~~~~~~g~ 127 (128)
+++++|+.+.+|.|.
T Consensus 80 ~~~~~g~~~~~~~g~ 94 (104)
T cd02997 80 KYFENGKFVEKYEGE 94 (104)
T ss_pred EEEeCCCeeEEeCCC
Confidence 999999988888885
No 23
>PRK10996 thioredoxin 2; Provisional
Probab=99.86 E-value=3.8e-21 Score=121.05 Aligned_cols=92 Identities=27% Similarity=0.658 Sum_probs=83.6
Q ss_pred CCceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCE
Q psy9104 32 ESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPT 111 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt 111 (128)
...+.+.+.+++++.++++++++|.||++||++|+.+.+.+.++++.+.+. +.++.+|.+++ +.++++|+++++||
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~-~~l~~~~~V~~~Pt 109 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE-RELSARFRIRSIPT 109 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC-HHHHHhcCCCccCE
Confidence 334667889999999988999999999999999999999999999887654 99999999999 99999999999999
Q ss_pred EEEEeCCccccccccc
Q psy9104 112 LKIFRNGQVSKAKKTE 127 (128)
Q Consensus 112 ~~~~~~g~~~~~~~g~ 127 (128)
+++|++|+.+.++.|.
T Consensus 110 lii~~~G~~v~~~~G~ 125 (139)
T PRK10996 110 IMIFKNGQVVDMLNGA 125 (139)
T ss_pred EEEEECCEEEEEEcCC
Confidence 9999999999888875
No 24
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.86 E-value=2.4e-21 Score=117.65 Aligned_cols=88 Identities=19% Similarity=0.385 Sum_probs=77.3
Q ss_pred EcChhhHHHhh---ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 37 DLGDSDFEAVI---NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 37 ~~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
.++.++|++.+ +.+++++|.||++||++|+.+.|.++++.+.+++. ++.++.+|++++ +.++++++++++||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~-~~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHE-RRLARKLGAHSVPAIV 84 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEecccc-HHHHHHcCCccCCEEE
Confidence 45667787654 36899999999999999999999999999998742 489999999999 9999999999999999
Q ss_pred EEeCCccccccccc
Q psy9104 114 IFRNGQVSKAKKTE 127 (128)
Q Consensus 114 ~~~~g~~~~~~~g~ 127 (128)
+|++|+.+.++.|.
T Consensus 85 i~~~g~~~~~~~G~ 98 (111)
T cd02963 85 GIINGQVTFYHDSS 98 (111)
T ss_pred EEECCEEEEEecCC
Confidence 99999988887775
No 25
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.86 E-value=2.4e-21 Score=117.95 Aligned_cols=89 Identities=24% Similarity=0.390 Sum_probs=79.3
Q ss_pred CceEEcChhhHHHhhccC---CcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCC
Q psy9104 33 SSVLDLGDSDFEAVINQH---ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGY 109 (128)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~---~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~ 109 (128)
..+.+++.++|.+.+... ++++|+||++||++|+.+.|.++++++++++ +.|+.||++++ .++++|+++++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~--~l~~~~~i~~~ 77 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA--FLVNYLDIKVL 77 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh--HHHHhcCCCcC
Confidence 356788889999888433 8999999999999999999999999998753 78999999877 89999999999
Q ss_pred CEEEEEeCCccccccccc
Q psy9104 110 PTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 110 Pt~~~~~~g~~~~~~~g~ 127 (128)
||+++|++|+.+.++.|.
T Consensus 78 Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 78 PTLLVYKNGELIDNIVGF 95 (113)
T ss_pred CEEEEEECCEEEEEEecH
Confidence 999999999999988874
No 26
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.86 E-value=3.5e-21 Score=114.88 Aligned_cols=74 Identities=20% Similarity=0.486 Sum_probs=68.0
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC-ccchhhhhhcCCCCCCEEEEEeCCcccccccc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT-EAGKETCNKHGVSGYPTLKIFRNGQVSKAKKT 126 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 126 (128)
.++++++|.||++||++|+.+.|.++++++.+++ +.++.+|.+ ++ +.++++|+++++||+++|++| .+.+|.|
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~-~~l~~~~~V~~~PT~~lf~~g-~~~~~~G 89 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIK-PSLLSRYGVVGFPTILLFNST-PRVRYNG 89 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCC-HHHHHhcCCeecCEEEEEcCC-ceeEecC
Confidence 6899999999999999999999999999998863 778899998 66 899999999999999999988 7888988
Q ss_pred c
Q psy9104 127 E 127 (128)
Q Consensus 127 ~ 127 (128)
.
T Consensus 90 ~ 90 (100)
T cd02999 90 T 90 (100)
T ss_pred C
Confidence 5
No 27
>KOG0907|consensus
Probab=99.86 E-value=3.6e-21 Score=115.36 Aligned_cols=75 Identities=31% Similarity=0.641 Sum_probs=70.5
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCccccccccc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 127 (128)
..+++++|+|||+||++|+.+.|.+.+++.++++ +.|+.+|+++. .++++.++++..|||++|++|+.+.++.|.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~-~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa 93 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDEL-EEVAKEFNVKAMPTFVFYKGGEEVDEVVGA 93 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccC-HhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence 4569999999999999999999999999999875 89999999996 999999999999999999999999998885
No 28
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.86 E-value=1.1e-20 Score=112.88 Aligned_cols=89 Identities=40% Similarity=0.805 Sum_probs=79.1
Q ss_pred eEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 35 VLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 35 ~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
+.+++.+++++.+ +++++++|+||++||++|+.+.+.+.++++.+.+. +.++.+|++++ +.++++|+++++|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~-~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH-QSLAQQYGVRGFPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch-HHHHHHCCCCccCEEE
Confidence 5688999999988 55667999999999999999999999999998765 99999999999 9999999999999999
Q ss_pred EEeCC-ccccccccc
Q psy9104 114 IFRNG-QVSKAKKTE 127 (128)
Q Consensus 114 ~~~~g-~~~~~~~g~ 127 (128)
+|++| +....|.|+
T Consensus 78 ~~~~~~~~~~~~~g~ 92 (103)
T cd03001 78 VFGAGKNSPQDYQGG 92 (103)
T ss_pred EECCCCcceeecCCC
Confidence 99988 456677775
No 29
>PTZ00102 disulphide isomerase; Provisional
Probab=99.85 E-value=2.2e-20 Score=137.83 Aligned_cols=93 Identities=45% Similarity=0.793 Sum_probs=85.1
Q ss_pred CceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEE
Q psy9104 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112 (128)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~ 112 (128)
..+..++..+|++.++++++++|.||++||++|+++.|.+.++++.+...+.++.++.+|++++ ..++++|+++++||+
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELAQEFGVRGYPTI 110 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHHHhcCCCcccEE
Confidence 5678999999999998899999999999999999999999999988765556799999999999 999999999999999
Q ss_pred EEEeCCccccccccc
Q psy9104 113 KIFRNGQVSKAKKTE 127 (128)
Q Consensus 113 ~~~~~g~~~~~~~g~ 127 (128)
++|++|+.+ +|.|.
T Consensus 111 ~~~~~g~~~-~y~g~ 124 (477)
T PTZ00102 111 KFFNKGNPV-NYSGG 124 (477)
T ss_pred EEEECCceE-EecCC
Confidence 999998876 88875
No 30
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.85 E-value=2.2e-20 Score=113.07 Aligned_cols=92 Identities=24% Similarity=0.578 Sum_probs=78.2
Q ss_pred ceEEcChhhHHHhh---ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhh-hcCCCCC
Q psy9104 34 SVLDLGDSDFEAVI---NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCN-KHGVSGY 109 (128)
Q Consensus 34 ~~~~~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~-~~~v~~~ 109 (128)
.+++++.++|++.+ .++++++|.||++||++|+++.+.+.++++.+.+. ++.++.+|+++++..+++ .++++++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccchhhHHhhcCCCcC
Confidence 57889999999887 46899999999999999999999999999988742 499999999983267776 5999999
Q ss_pred CEEEEEeCC-ccccccccc
Q psy9104 110 PTLKIFRNG-QVSKAKKTE 127 (128)
Q Consensus 110 Pt~~~~~~g-~~~~~~~g~ 127 (128)
||+++|++| +....|.|+
T Consensus 80 Pti~~f~~~~~~~~~y~g~ 98 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSE 98 (109)
T ss_pred CEEEEEcCCCCCceeccCC
Confidence 999999754 567788874
No 31
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.85 E-value=1.3e-20 Score=117.85 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=75.3
Q ss_pred ChhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE-EE
Q psy9104 39 GDSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK-IF 115 (128)
Q Consensus 39 ~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~-~~ 115 (128)
+.+++++.+ +.+++++|.||++||++|+.+.|.|+++++++++. +.++.||+|++ ++++++|++++.|+++ +|
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~-~dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEV-PDFNTMYELYDPCTVMFFF 85 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCC-HHHHHHcCccCCCcEEEEE
Confidence 467788887 56889999999999999999999999999998765 88899999999 9999999999887666 88
Q ss_pred eCCc-ccccccc
Q psy9104 116 RNGQ-VSKAKKT 126 (128)
Q Consensus 116 ~~g~-~~~~~~g 126 (128)
++|+ .+.+.+|
T Consensus 86 k~g~~~vd~~tG 97 (142)
T PLN00410 86 RNKHIMIDLGTG 97 (142)
T ss_pred ECCeEEEEEecc
Confidence 9999 7888777
No 32
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.85 E-value=1.5e-20 Score=112.95 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=71.8
Q ss_pred hhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeC
Q psy9104 40 DSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRN 117 (128)
Q Consensus 40 ~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~ 117 (128)
.+++++.+ +++++++|.|+++||++|+.+.|.++++++++++. +.|+.||+++. ++++++|+++..||+++|++
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev-~dva~~y~I~amPtfvffkn 77 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKV-PVYTQYFDISYIPSTIFFFN 77 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecccc-HHHHHhcCceeCcEEEEEEC
Confidence 35667776 36999999999999999999999999999998754 89999999999 99999999999999999999
Q ss_pred Cccccc
Q psy9104 118 GQVSKA 123 (128)
Q Consensus 118 g~~~~~ 123 (128)
|+.+.-
T Consensus 78 gkh~~~ 83 (114)
T cd02986 78 GQHMKV 83 (114)
T ss_pred CcEEEE
Confidence 987653
No 33
>PTZ00051 thioredoxin; Provisional
Probab=99.84 E-value=1.4e-20 Score=111.69 Aligned_cols=84 Identities=37% Similarity=0.765 Sum_probs=76.1
Q ss_pred ChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCC
Q psy9104 39 GDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNG 118 (128)
Q Consensus 39 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g 118 (128)
+.+++.+.++.+++++|+||++||++|+.+.+.++++++.+.+ +.++.+|++++ ..++++|+++++||+++|++|
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDEL-SEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcch-HHHHHHCCCceeeEEEEEeCC
Confidence 3567888888899999999999999999999999999987543 89999999998 999999999999999999999
Q ss_pred ccccccccc
Q psy9104 119 QVSKAKKTE 127 (128)
Q Consensus 119 ~~~~~~~g~ 127 (128)
+.+.++.|.
T Consensus 82 ~~~~~~~G~ 90 (98)
T PTZ00051 82 SVVDTLLGA 90 (98)
T ss_pred eEEEEEeCC
Confidence 999888874
No 34
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.84 E-value=1.6e-20 Score=111.18 Aligned_cols=85 Identities=24% Similarity=0.572 Sum_probs=75.5
Q ss_pred ChhhHHHhhccC--CcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEe
Q psy9104 39 GDSDFEAVINQH--ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 39 ~~~~~~~~~~~~--~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~ 116 (128)
+.+++++.+... ++++|.||++||++|+.+.+.++++++.+.. ++.++.+|.++. ++++++|+++++||+++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-PEISEKFEITAVPTFVFFR 76 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-HHHHHhcCCccccEEEEEE
Confidence 356788888444 9999999999999999999999999988633 499999999998 9999999999999999999
Q ss_pred CCccccccccc
Q psy9104 117 NGQVSKAKKTE 127 (128)
Q Consensus 117 ~g~~~~~~~g~ 127 (128)
+|+.+.++.|.
T Consensus 77 ~g~~~~~~~g~ 87 (97)
T cd02984 77 NGTIVDRVSGA 87 (97)
T ss_pred CCEEEEEEeCC
Confidence 99998888774
No 35
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.84 E-value=4.5e-20 Score=109.86 Aligned_cols=88 Identities=45% Similarity=0.893 Sum_probs=78.8
Q ss_pred cChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeC
Q psy9104 38 LGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRN 117 (128)
Q Consensus 38 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~ 117 (128)
+++++|++.+.++++++|.||++||++|+.+.+.++++++.+.+. .++.++.+|++++ +.++++|+++++|+++++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~-~~~~~~~~i~~~P~~~~~~~ 78 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAE-KDLASRFGVSGFPTIKFFPK 78 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccch-HHHHHhCCCCcCCEEEEecC
Confidence 467889999889999999999999999999999999999888753 2599999999999 99999999999999999997
Q ss_pred Cccccccccc
Q psy9104 118 GQVSKAKKTE 127 (128)
Q Consensus 118 g~~~~~~~g~ 127 (128)
|+.+..|.|.
T Consensus 79 ~~~~~~~~g~ 88 (102)
T TIGR01126 79 GKKPVDYEGG 88 (102)
T ss_pred CCcceeecCC
Confidence 7767778775
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.83 E-value=9.2e-20 Score=109.06 Aligned_cols=91 Identities=45% Similarity=0.838 Sum_probs=79.1
Q ss_pred eEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc-cchhhhhhcCCCCCCEE
Q psy9104 35 VLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE-AGKETCNKHGVSGYPTL 112 (128)
Q Consensus 35 ~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~ 112 (128)
+.+++++++++.+ +.+++++|.||++||++|+++.+.+.++++.+.. ..++.++.+|+++ + +.++++|+++++|++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~-~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEAN-KDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcc-hhhHHhCCCCCcCEE
Confidence 5678899999988 4556999999999999999999999999999862 2459999999999 7 999999999999999
Q ss_pred EEEeCC-ccccccccc
Q psy9104 113 KIFRNG-QVSKAKKTE 127 (128)
Q Consensus 113 ~~~~~g-~~~~~~~g~ 127 (128)
++|++| +....|.|+
T Consensus 80 ~~~~~~~~~~~~~~g~ 95 (105)
T cd02998 80 KFFPKGSTEPVKYEGG 95 (105)
T ss_pred EEEeCCCCCccccCCc
Confidence 999866 567777775
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.83 E-value=9.5e-20 Score=108.89 Aligned_cols=90 Identities=36% Similarity=0.706 Sum_probs=78.6
Q ss_pred eEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 35 VLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 35 ~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
+.++++++|++.+ +.+++++|+||++||++|+.+.+.+.++++.+++ ..++.++.+|++++ +++..+++.++||++
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~--~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAN--DVPSEFVVDGFPTIL 78 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcch--hhhhhccCCCCCEEE
Confidence 5788999999988 5569999999999999999999999999998865 24599999999987 478889999999999
Q ss_pred EEeCCc--cccccccc
Q psy9104 114 IFRNGQ--VSKAKKTE 127 (128)
Q Consensus 114 ~~~~g~--~~~~~~g~ 127 (128)
+|++|+ ...+|.|+
T Consensus 79 ~~~~~~~~~~~~~~g~ 94 (104)
T cd02995 79 FFPAGDKSNPIKYEGD 94 (104)
T ss_pred EEcCCCcCCceEccCC
Confidence 999887 57778875
No 38
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.83 E-value=4.2e-20 Score=110.83 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=72.3
Q ss_pred hhHHHhhccCCcEEEEEEcCCCHHHhhhcHHH---HHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEE
Q psy9104 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEY---EKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 41 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~ 114 (128)
+.+.++++++++++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.+|.+++ ...++++|+++++||+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 56788888999999999999999999999887 567776654 399999999873 268899999999999999
Q ss_pred Ee--CCccccccccc
Q psy9104 115 FR--NGQVSKAKKTE 127 (128)
Q Consensus 115 ~~--~g~~~~~~~g~ 127 (128)
|+ +|+.+.++.|.
T Consensus 79 ~~~~~g~~~~~~~G~ 93 (104)
T cd02953 79 YGPGGEPEPLRLPGF 93 (104)
T ss_pred ECCCCCCCCcccccc
Confidence 98 79989888885
No 39
>KOG0190|consensus
Probab=99.82 E-value=5.4e-20 Score=133.93 Aligned_cols=97 Identities=52% Similarity=0.879 Sum_probs=92.1
Q ss_pred cCCCceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCC
Q psy9104 30 CDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGY 109 (128)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~ 109 (128)
...+.+..++.++|.+.+..+..++|.||||||.+|+++.|++++.+..+...++.+.+++||+.++ ..++.+|+++++
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v~gy 100 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEVRGY 100 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcCCCC
Confidence 5688899999999999999999999999999999999999999999999998888899999999999 999999999999
Q ss_pred CEEEEEeCCccccccccc
Q psy9104 110 PTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 110 Pt~~~~~~g~~~~~~~g~ 127 (128)
||+-+++||+....|.|+
T Consensus 101 PTlkiFrnG~~~~~Y~G~ 118 (493)
T KOG0190|consen 101 PTLKIFRNGRSAQDYNGP 118 (493)
T ss_pred CeEEEEecCCcceeccCc
Confidence 999999999987888885
No 40
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.82 E-value=2e-19 Score=106.72 Aligned_cols=85 Identities=34% Similarity=0.716 Sum_probs=75.5
Q ss_pred ChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeC
Q psy9104 39 GDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRN 117 (128)
Q Consensus 39 ~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~ 117 (128)
+.+++.+.+ +.+++++|+||++||++|+.+.+.+.++.+.+++. +.++.+|++++ +.++++|++..+|++++|++
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-~~~~~~~~v~~~P~~~~~~~ 77 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDEN-PDIAAKYGIRSIPTLLLFKN 77 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCC-HHHHHHcCCCcCCEEEEEeC
Confidence 567788877 44679999999999999999999999999887654 99999999999 99999999999999999999
Q ss_pred Cccccccccc
Q psy9104 118 GQVSKAKKTE 127 (128)
Q Consensus 118 g~~~~~~~g~ 127 (128)
|+.+..+.|.
T Consensus 78 g~~~~~~~g~ 87 (101)
T TIGR01068 78 GKEVDRSVGA 87 (101)
T ss_pred CcEeeeecCC
Confidence 9888777764
No 41
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.82 E-value=1.8e-19 Score=106.58 Aligned_cols=89 Identities=46% Similarity=0.960 Sum_probs=79.2
Q ss_pred EcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEe
Q psy9104 37 DLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 37 ~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~ 116 (128)
+++.++|.+.+.++++++|+||++||++|+.+.+.+.++++.+.+ ..++.++.+|++++ ..++++|+++++||+++++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTAN-NDLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccch-HHHHHhCCCCCCCEEEEEc
Confidence 577889999998888999999999999999999999999988841 23499999999998 9999999999999999998
Q ss_pred CC-ccccccccc
Q psy9104 117 NG-QVSKAKKTE 127 (128)
Q Consensus 117 ~g-~~~~~~~g~ 127 (128)
+| +...+|.|.
T Consensus 80 ~~~~~~~~~~g~ 91 (101)
T cd02961 80 NGSKEPVKYEGP 91 (101)
T ss_pred CCCcccccCCCC
Confidence 66 778888875
No 42
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.82 E-value=2.5e-19 Score=109.26 Aligned_cols=86 Identities=35% Similarity=0.770 Sum_probs=73.7
Q ss_pred ceEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-chhhhhhcCCCCCCE
Q psy9104 34 SVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-GKETCNKHGVSGYPT 111 (128)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~v~~~Pt 111 (128)
.+.++++++|++.+ ..+++++|.||++||++|+.+.+.++++++.+.+....+.+..+|++.+ +..++++|+++++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 57889999999998 4557999999999999999999999999998764333488999998632 278999999999999
Q ss_pred EEEEeCCc
Q psy9104 112 LKIFRNGQ 119 (128)
Q Consensus 112 ~~~~~~g~ 119 (128)
+++|++|+
T Consensus 82 ~~lf~~~~ 89 (114)
T cd02992 82 LRYFPPFS 89 (114)
T ss_pred EEEECCCC
Confidence 99999776
No 43
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.82 E-value=1.2e-19 Score=114.50 Aligned_cols=85 Identities=20% Similarity=0.435 Sum_probs=72.8
Q ss_pred hhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc-hhhhhhcCCCCCCEEEEEe-C
Q psy9104 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG-KETCNKHGVSGYPTLKIFR-N 117 (128)
Q Consensus 40 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~v~~~Pt~~~~~-~ 117 (128)
...+++++.++++++|+||++||++|+.+.|.+.++++.+.+. +.|+.+|++... ..++++|+++++||+++|+ +
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 4567788889999999999999999999999999999988654 677777776541 5788999999999999996 8
Q ss_pred Cccccccccc
Q psy9104 118 GQVSKAKKTE 127 (128)
Q Consensus 118 g~~~~~~~g~ 127 (128)
|+++.++.|.
T Consensus 87 G~~v~~~~G~ 96 (142)
T cd02950 87 GNEEGQSIGL 96 (142)
T ss_pred CCEEEEEeCC
Confidence 9999888885
No 44
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.82 E-value=1.9e-19 Score=108.06 Aligned_cols=84 Identities=35% Similarity=0.771 Sum_probs=71.7
Q ss_pred hhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 41 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
++|++. .++++++|.||++||++|+.+.|.++++++.+...+.++.+..+|+++. +.++++|+++++||+++|++| .
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I~~~Pt~~l~~~~-~ 83 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGVRGYPTIKLLKGD-L 83 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCCccccEEEEEcCC-C
Confidence 566664 4578999999999999999999999999998864334589999999998 899999999999999999766 4
Q ss_pred ccccccc
Q psy9104 121 SKAKKTE 127 (128)
Q Consensus 121 ~~~~~g~ 127 (128)
...+.|+
T Consensus 84 ~~~~~G~ 90 (104)
T cd03000 84 AYNYRGP 90 (104)
T ss_pred ceeecCC
Confidence 5667775
No 45
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=2.1e-19 Score=116.97 Aligned_cols=90 Identities=18% Similarity=0.347 Sum_probs=79.5
Q ss_pred CCceEEcCh-hhHHHhhcc---CCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCC
Q psy9104 32 ESSVLDLGD-SDFEAVINQ---HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS 107 (128)
Q Consensus 32 ~~~~~~~~~-~~~~~~~~~---~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~ 107 (128)
-..+.+++. ++|.+.+.. +.+++|+||++||++|+.+.+.|.+++..++. +.|+.||+++. .++.+|+++
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~~--~l~~~f~v~ 134 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASAT--GASDEFDTD 134 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccch--hhHHhCCCC
Confidence 456788888 999999843 34999999999999999999999999998753 99999999976 789999999
Q ss_pred CCCEEEEEeCCccccccccc
Q psy9104 108 GYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 108 ~~Pt~~~~~~g~~~~~~~g~ 127 (128)
.+||+++|++|+.+.++.|.
T Consensus 135 ~vPTlllyk~G~~v~~~vG~ 154 (175)
T cd02987 135 ALPALLVYKGGELIGNFVRV 154 (175)
T ss_pred CCCEEEEEECCEEEEEEech
Confidence 99999999999999888764
No 46
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.80 E-value=5.3e-19 Score=104.85 Aligned_cols=80 Identities=29% Similarity=0.612 Sum_probs=72.1
Q ss_pred HHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcccc
Q psy9104 44 EAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122 (128)
Q Consensus 44 ~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 122 (128)
+..+ +.+++++++||++||+.|+.+.+.++++.+++.+. +.+..+|.+++ +++.+++++.++||++++++|+.+.
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~-~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDED-QEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC-HHHHHHCCCeeccEEEEEECCeEEE
Confidence 3444 78899999999999999999999999999887653 99999999999 9999999999999999999999998
Q ss_pred ccccc
Q psy9104 123 AKKTE 127 (128)
Q Consensus 123 ~~~g~ 127 (128)
++.|.
T Consensus 82 ~~~g~ 86 (97)
T cd02949 82 EISGV 86 (97)
T ss_pred EEeCC
Confidence 88774
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.79 E-value=1.3e-18 Score=107.09 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=72.5
Q ss_pred ceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc----------hhhhhh
Q psy9104 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG----------KETCNK 103 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~----------~~~~~~ 103 (128)
....++.+++.+.++.++.++|+|+++|||+|+.+.|.+.++.++.. ..++.+|.+++. .++.++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999998832 557777776431 144456
Q ss_pred cC----CCCCCEEEEEeCCccccccccc
Q psy9104 104 HG----VSGYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 104 ~~----v~~~Pt~~~~~~g~~~~~~~g~ 127 (128)
|+ +.++||++++++|+.+.+..|.
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEEEEeCC
Confidence 55 5569999999999999988873
No 48
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.79 E-value=1.4e-18 Score=127.48 Aligned_cols=93 Identities=56% Similarity=0.959 Sum_probs=85.6
Q ss_pred ceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
.+..++.++|++.++++++++|.||++||++|+.+.|.+.++++.+.+.+.++.++.||++++ .+++++|+++++||++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCCccccEEE
Confidence 567899999999998899999999999999999999999999998876666799999999999 9999999999999999
Q ss_pred EEeCCcc-ccccccc
Q psy9104 114 IFRNGQV-SKAKKTE 127 (128)
Q Consensus 114 ~~~~g~~-~~~~~g~ 127 (128)
+|++|+. +.+|.|.
T Consensus 81 ~~~~g~~~~~~~~g~ 95 (462)
T TIGR01130 81 IFRNGEDSVSDYNGP 95 (462)
T ss_pred EEeCCccceeEecCC
Confidence 9999987 7888875
No 49
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.76 E-value=4.2e-18 Score=103.65 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=68.5
Q ss_pred hhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 41 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
+++.+.+..+..++|+||++||++|+.+++.+++++... +. +.+..+|.+++ ++++++|+++++||++++++|+.
T Consensus 13 ~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~-~~l~~~~~v~~vPt~~i~~~g~~ 87 (113)
T cd02975 13 EEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDED-KEKAEKYGVERVPTTIFLQDGGK 87 (113)
T ss_pred HHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcC-HHHHHHcCCCcCCEEEEEeCCee
Confidence 446666677888999999999999999999999998775 32 89999999999 99999999999999999997654
Q ss_pred cc--cccc
Q psy9104 121 SK--AKKT 126 (128)
Q Consensus 121 ~~--~~~g 126 (128)
.. ++.|
T Consensus 88 ~~~~~~~G 95 (113)
T cd02975 88 DGGIRYYG 95 (113)
T ss_pred cceEEEEe
Confidence 43 4555
No 50
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.76 E-value=5.7e-18 Score=111.61 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=77.6
Q ss_pred CCCceEEcChhhHHHhh-cc--CCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCC
Q psy9104 31 DESSVLDLGDSDFEAVI-NQ--HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS 107 (128)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~--~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~ 107 (128)
.-..+.+++.++|...+ .. +.+++|.||++||++|+.+.+.|.+++..++. +.|+.+|+++. ...|+++
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad~~----~~~~~i~ 151 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIISTQC----IPNYPDK 151 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhHHh----HhhCCCC
Confidence 34678899999999876 32 45899999999999999999999999999753 89999998654 5899999
Q ss_pred CCCEEEEEeCCccccccccc
Q psy9104 108 GYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 108 ~~Pt~~~~~~g~~~~~~~g~ 127 (128)
.+||+++|++|+.+.++.|.
T Consensus 152 ~lPTlliyk~G~~v~~ivG~ 171 (192)
T cd02988 152 NLPTILVYRNGDIVKQFIGL 171 (192)
T ss_pred CCCEEEEEECCEEEEEEeCc
Confidence 99999999999999998874
No 51
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.76 E-value=7.5e-18 Score=102.19 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=70.5
Q ss_pred ceEEcChhhHHHhhccCCcEEEEEEc--CCCH---HHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC-----ccchhhhhh
Q psy9104 34 SVLDLGDSDFEAVINQHETALVMFYA--PWCG---HCKKLKPEYEKAATDVKGADPPISFVKVDCT-----EAGKETCNK 103 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~lv~f~~--~~C~---~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~-----~~~~~~~~~ 103 (128)
.+..++..+|+..+++++.+||.||+ +||. +|+++.+++.+.+. ++.++.||++ ++ .+++++
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~-~~L~~~ 73 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLN-MELGER 73 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhh-HHHHHH
Confidence 46789999999999999999999999 7777 66666555544332 3889999994 45 889999
Q ss_pred cCCC--CCCEEEEEeCCc--cccccccc
Q psy9104 104 HGVS--GYPTLKIFRNGQ--VSKAKKTE 127 (128)
Q Consensus 104 ~~v~--~~Pt~~~~~~g~--~~~~~~g~ 127 (128)
|+|+ ++||+.+|++|+ ....|.|+
T Consensus 74 y~I~~~gyPTl~lF~~g~~~~~~~Y~G~ 101 (116)
T cd03007 74 YKLDKESYPVIYLFHGGDFENPVPYSGA 101 (116)
T ss_pred hCCCcCCCCEEEEEeCCCcCCCccCCCC
Confidence 9999 999999999885 55788884
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.75 E-value=1.2e-17 Score=97.07 Aligned_cols=81 Identities=37% Similarity=0.724 Sum_probs=72.4
Q ss_pred hHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCccc
Q psy9104 42 DFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVS 121 (128)
Q Consensus 42 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 121 (128)
+|++.+..+++++|+||++||++|+.+.+.++++.+. . .++.++.+|++++ ..+++.|+++++|+++++++|+.+
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~-~~~~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDEN-PELAEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCC-hhHHHhcCcccccEEEEEECCEEE
Confidence 5677777779999999999999999999999999887 3 3399999999998 899999999999999999999988
Q ss_pred cccccc
Q psy9104 122 KAKKTE 127 (128)
Q Consensus 122 ~~~~g~ 127 (128)
..+.|.
T Consensus 77 ~~~~g~ 82 (93)
T cd02947 77 DRVVGA 82 (93)
T ss_pred EEEecC
Confidence 877774
No 53
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.75 E-value=1.1e-17 Score=122.11 Aligned_cols=94 Identities=23% Similarity=0.509 Sum_probs=78.7
Q ss_pred CCCceEEcChhhHHHhhc---cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhh-hhcCC
Q psy9104 31 DESSVLDLGDSDFEAVIN---QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC-NKHGV 106 (128)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~-~~~~v 106 (128)
....+.+++.++|++.+. ++++++|.||++||++|+.+.|.++++++++.+. ++.++.+|++.+...++ ++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCccHHHHHHcCC
Confidence 455789999999999974 8899999999999999999999999999998653 38899999987623454 78999
Q ss_pred CCCCEEEEEeCCc-ccccccc
Q psy9104 107 SGYPTLKIFRNGQ-VSKAKKT 126 (128)
Q Consensus 107 ~~~Pt~~~~~~g~-~~~~~~g 126 (128)
+++||+++|++|+ ....|.|
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~ 447 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPS 447 (463)
T ss_pred CccceEEEEECCCCCceeCCC
Confidence 9999999999775 3456764
No 54
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.75 E-value=7e-18 Score=104.30 Aligned_cols=84 Identities=21% Similarity=0.314 Sum_probs=68.2
Q ss_pred hhHHHhhccC-CcEEEEEEcCCCHHHhhhcHHHH---HHHHHhcCCCCCeEEEEEeCCcc------------chhhhhhc
Q psy9104 41 SDFEAVINQH-ETALVMFYAPWCGHCKKLKPEYE---KAATDVKGADPPISFVKVDCTEA------------GKETCNKH 104 (128)
Q Consensus 41 ~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~v~~~~vd~~~~------------~~~~~~~~ 104 (128)
+.++++.+++ ++++|.||++||++|+.+.+.+. ++.+.+.+. +.++.+|.+++ +..++++|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 4566777888 99999999999999999999875 455554433 88899998753 26789999
Q ss_pred CCCCCCEEEEEe-C-Cccccccccc
Q psy9104 105 GVSGYPTLKIFR-N-GQVSKAKKTE 127 (128)
Q Consensus 105 ~v~~~Pt~~~~~-~-g~~~~~~~g~ 127 (128)
+++++||+++++ + |+++.++.|.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~ 105 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGY 105 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCC
Confidence 999999999998 4 6888888875
No 55
>KOG0908|consensus
Probab=99.74 E-value=5.5e-18 Score=113.06 Aligned_cols=87 Identities=33% Similarity=0.633 Sum_probs=77.8
Q ss_pred EEcC-hhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEE
Q psy9104 36 LDLG-DSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112 (128)
Q Consensus 36 ~~~~-~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~ 112 (128)
+.++ ...|+..+ ...+.++|.|+++||.+|+.+.|.+..++..|++ .+|.+||+++. +..+..++|+..||+
T Consensus 4 i~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c-~~taa~~gV~amPTF 78 (288)
T KOG0908|consen 4 IVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDEC-RGTAATNGVNAMPTF 78 (288)
T ss_pred EEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHh-hchhhhcCcccCceE
Confidence 3444 35588887 4567999999999999999999999999999976 79999999999 999999999999999
Q ss_pred EEEeCCccccccccc
Q psy9104 113 KIFRNGQVSKAKKTE 127 (128)
Q Consensus 113 ~~~~~g~~~~~~~g~ 127 (128)
++|+||..+++++|.
T Consensus 79 iff~ng~kid~~qGA 93 (288)
T KOG0908|consen 79 IFFRNGVKIDQIQGA 93 (288)
T ss_pred EEEecCeEeeeecCC
Confidence 999999999999885
No 56
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.73 E-value=3e-17 Score=100.23 Aligned_cols=82 Identities=21% Similarity=0.445 Sum_probs=68.3
Q ss_pred ChhhHHHhhcc--CCcEEEEEEc-------CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------chhhhhh
Q psy9104 39 GDSDFEAVINQ--HETALVMFYA-------PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------GKETCNK 103 (128)
Q Consensus 39 ~~~~~~~~~~~--~~~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------~~~~~~~ 103 (128)
+.++|.+.+.. +++++|.||| +||++|+.++|.++++..++++. +.++.||+++. +.++.++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcccccCcchhhHhc
Confidence 34567777743 7899999999 99999999999999999998744 88999999763 2689999
Q ss_pred cCCC-CCCEEEEEeCCccccc
Q psy9104 104 HGVS-GYPTLKIFRNGQVSKA 123 (128)
Q Consensus 104 ~~v~-~~Pt~~~~~~g~~~~~ 123 (128)
++++ ++||++++++|+.+..
T Consensus 85 ~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred cCcccCCCEEEEEcCCceecc
Confidence 9998 9999999987765543
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.73 E-value=3.5e-17 Score=119.52 Aligned_cols=92 Identities=25% Similarity=0.563 Sum_probs=78.8
Q ss_pred CCceEEcChhhHHHhh---ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC-ccchhhhh-hcCC
Q psy9104 32 ESSVLDLGDSDFEAVI---NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT-EAGKETCN-KHGV 106 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~-~~~v 106 (128)
...+.+++.++|++.+ +++++++|.||++||++|+.+.|.++++++.+.+. ++.++.+|++ .+ ..+++ +|+|
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~-~~la~~~~~I 420 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQ-KEFAKQELQL 420 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcc-hHHHHhhCCC
Confidence 4578899999999887 58999999999999999999999999999998643 4999999999 65 78886 6999
Q ss_pred CCCCEEEEEeCCc-ccccccc
Q psy9104 107 SGYPTLKIFRNGQ-VSKAKKT 126 (128)
Q Consensus 107 ~~~Pt~~~~~~g~-~~~~~~g 126 (128)
+++||+++|++|. ....|.|
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~ 441 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPS 441 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCC
Confidence 9999999998665 3455664
No 58
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.73 E-value=3.4e-17 Score=100.22 Aligned_cols=84 Identities=18% Similarity=0.428 Sum_probs=63.4
Q ss_pred hhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCC--CCEEEEEe-
Q psy9104 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG--YPTLKIFR- 116 (128)
Q Consensus 40 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~--~Pt~~~~~- 116 (128)
.+.++++..++++++|.||++||++|+.+.+.+.+....... . ..++.+|.+++.......|++.+ +||+++++
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~ 85 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDP 85 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecCCCCchhhhcccCCCccceEEEECC
Confidence 445566668899999999999999999999999997665443 2 34555566555224567888876 99999997
Q ss_pred CCcccccccc
Q psy9104 117 NGQVSKAKKT 126 (128)
Q Consensus 117 ~g~~~~~~~g 126 (128)
+|+++.++.+
T Consensus 86 ~Gk~~~~~~~ 95 (117)
T cd02959 86 SGDVHPEIIN 95 (117)
T ss_pred CCCCchhhcc
Confidence 9998775543
No 59
>PTZ00102 disulphide isomerase; Provisional
Probab=99.72 E-value=4.5e-17 Score=120.26 Aligned_cols=94 Identities=27% Similarity=0.558 Sum_probs=82.2
Q ss_pred CCceEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCC
Q psy9104 32 ESSVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYP 110 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~P 110 (128)
...+..+++++|++.+ +++++++|.||++||++|+.+.|.++++++.+.+. .++.++.+|++++ +..+++++++++|
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~-~~~~~~~~v~~~P 433 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTAN-ETPLEEFSWSAFP 433 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCC-ccchhcCCCcccC
Confidence 4457889999999985 88899999999999999999999999999887652 4599999999998 8889999999999
Q ss_pred EEEEEeCCcc-ccccccc
Q psy9104 111 TLKIFRNGQV-SKAKKTE 127 (128)
Q Consensus 111 t~~~~~~g~~-~~~~~g~ 127 (128)
|+++|++|+. ..+|.|+
T Consensus 434 t~~~~~~~~~~~~~~~G~ 451 (477)
T PTZ00102 434 TILFVKAGERTPIPYEGE 451 (477)
T ss_pred eEEEEECCCcceeEecCc
Confidence 9999996665 4578885
No 60
>PTZ00062 glutaredoxin; Provisional
Probab=99.70 E-value=7e-17 Score=107.00 Aligned_cols=77 Identities=10% Similarity=0.186 Sum_probs=68.2
Q ss_pred cChhhHHHhhccC-CcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEe
Q psy9104 38 LGDSDFEAVINQH-ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 38 ~~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~ 116 (128)
.+.+++.+.++.+ +.++++|||+||++|+.+.+.+.+++++++. +.|+.||.+ |+|.++||+++|+
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d---------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA---------DANNEYGVFEFYQ 70 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc---------cCcccceEEEEEE
Confidence 3567788887654 8899999999999999999999999999854 999999965 8999999999999
Q ss_pred CCccccccccc
Q psy9104 117 NGQVSKAKKTE 127 (128)
Q Consensus 117 ~g~~~~~~~g~ 127 (128)
+|+.++++.|.
T Consensus 71 ~g~~i~r~~G~ 81 (204)
T PTZ00062 71 NSQLINSLEGC 81 (204)
T ss_pred CCEEEeeeeCC
Confidence 99999999884
No 61
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.67 E-value=1.6e-16 Score=97.94 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=63.6
Q ss_pred ChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHH-H--HHHHHhcCCCCCeEEEEEeCCccchhhhh--------hcCCC
Q psy9104 39 GDSDFEAVINQHETALVMFYAPWCGHCKKLKPEY-E--KAATDVKGADPPISFVKVDCTEAGKETCN--------KHGVS 107 (128)
Q Consensus 39 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l-~--~~~~~~~~~~~~v~~~~vd~~~~~~~~~~--------~~~v~ 107 (128)
+++.++++.+++|+++|.|+++||++|+.+.+.. . ++.+.+.. ++.++.+|.++. +++.+ .|++.
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~~ 79 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREER-PDVDKIYMNAAQAMTGQG 79 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcC-cHHHHHHHHHHHHhcCCC
Confidence 3566778889999999999999999999997643 2 33433332 399999999887 76655 35899
Q ss_pred CCCEEEEEe-CCcccccc
Q psy9104 108 GYPTLKIFR-NGQVSKAK 124 (128)
Q Consensus 108 ~~Pt~~~~~-~g~~~~~~ 124 (128)
++|++++++ +|+++.+.
T Consensus 80 G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 80 GWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred CCCEEEEECCCCCEEeee
Confidence 999999997 88877554
No 62
>KOG0190|consensus
Probab=99.65 E-value=6.3e-16 Score=112.90 Aligned_cols=91 Identities=34% Similarity=0.665 Sum_probs=77.1
Q ss_pred CceEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCE
Q psy9104 33 SSVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPT 111 (128)
Q Consensus 33 ~~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt 111 (128)
+++.-+.+++|++.+ +.++.++|.||+|||+||+++.|.++++++.+.+ .+++.++++|...| . ....++.++||
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaTaN-d--~~~~~~~~fPT 441 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDATAN-D--VPSLKVDGFPT 441 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEeccccc-c--Cccccccccce
Confidence 458888999999998 8999999999999999999999999999999998 57899999999888 3 23345666999
Q ss_pred EEEEeCCc--cccccccc
Q psy9104 112 LKIFRNGQ--VSKAKKTE 127 (128)
Q Consensus 112 ~~~~~~g~--~~~~~~g~ 127 (128)
+++++.|. .+..|.|.
T Consensus 442 I~~~pag~k~~pv~y~g~ 459 (493)
T KOG0190|consen 442 ILFFPAGHKSNPVIYNGD 459 (493)
T ss_pred EEEecCCCCCCCcccCCC
Confidence 99998554 36666663
No 63
>KOG0912|consensus
Probab=99.65 E-value=3.7e-16 Score=107.12 Aligned_cols=88 Identities=33% Similarity=0.672 Sum_probs=78.4
Q ss_pred ChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCC--CCeEEEEEeCCccchhhhhhcCCCCCCEEEEEe
Q psy9104 39 GDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGAD--PPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 39 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~ 116 (128)
+.++++..+..+..++|.|||+||+.++.++|.+++.++.+...- .++++..|||+++ ..++.+|.|+++||+-+++
T Consensus 2 t~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHhhhhccccCceeeeee
Confidence 567888888889999999999999999999999999988765433 3699999999999 9999999999999999999
Q ss_pred CCcccc-ccccc
Q psy9104 117 NGQVSK-AKKTE 127 (128)
Q Consensus 117 ~g~~~~-~~~g~ 127 (128)
+|.... +|+|.
T Consensus 81 nG~~~~rEYRg~ 92 (375)
T KOG0912|consen 81 NGEMMKREYRGQ 92 (375)
T ss_pred ccchhhhhhccc
Confidence 999876 78874
No 64
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.63 E-value=2.4e-15 Score=94.95 Aligned_cols=74 Identities=18% Similarity=0.352 Sum_probs=60.0
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCC-----CCCeEEEEEeCCcc------------------------chh
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGA-----DPPISFVKVDCTEA------------------------GKE 99 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-----~~~v~~~~vd~~~~------------------------~~~ 99 (128)
++++++|+|||+||++|++..|.|.++.+.+.+. +.++.++.|+.+++ +..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 6899999999999999999999999988776542 23488888887754 125
Q ss_pred hhhhcCCCCCCEEEEEe-CCcccc
Q psy9104 100 TCNKHGVSGYPTLKIFR-NGQVSK 122 (128)
Q Consensus 100 ~~~~~~v~~~Pt~~~~~-~g~~~~ 122 (128)
+.++|++.++||.++++ +|+++.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 67789999999999987 887654
No 65
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.63 E-value=4.7e-15 Score=87.32 Aligned_cols=69 Identities=32% Similarity=0.613 Sum_probs=57.0
Q ss_pred CCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------------------------chhhhhhcC
Q psy9104 50 HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------------------------GKETCNKHG 105 (128)
Q Consensus 50 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~~~~~ 105 (128)
+++++|+||++||++|++..|.+.++.+.+++ +.++.++.|+.++. +..+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 68999999999999999999999999999984 45588888888765 256788899
Q ss_pred CCCCCEEEEEe-CCc
Q psy9104 106 VSGYPTLKIFR-NGQ 119 (128)
Q Consensus 106 v~~~Pt~~~~~-~g~ 119 (128)
++++|++++++ +|+
T Consensus 80 i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 80 INGIPTLVLLDPDGK 94 (95)
T ss_dssp -TSSSEEEEEETTSB
T ss_pred CCcCCEEEEECCCCC
Confidence 99999999987 665
No 66
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.62 E-value=3.2e-15 Score=110.68 Aligned_cols=78 Identities=26% Similarity=0.479 Sum_probs=63.3
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEe----------------------------CCccchh
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD----------------------------CTEAGKE 99 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd----------------------------~~~~~~~ 99 (128)
+++++++|.|||+||++|+...|.++++++++...+ +.++.|. .+.+ ..
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~-~~ 130 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG-GT 130 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHHHHHHHhCCCcccceecccc-HH
Confidence 578999999999999999999999999999876433 5454443 3334 67
Q ss_pred hhhhcCCCCCCEEEEE-eCCcccccccccC
Q psy9104 100 TCNKHGVSGYPTLKIF-RNGQVSKAKKTEL 128 (128)
Q Consensus 100 ~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~ 128 (128)
+.+.|+++++||++++ ++|+++.++.|++
T Consensus 131 lak~fgV~giPTt~IIDkdGkIV~~~~G~~ 160 (521)
T PRK14018 131 LAQSLNISVYPSWAIIGKDGDVQRIVKGSI 160 (521)
T ss_pred HHHHcCCCCcCeEEEEcCCCeEEEEEeCCC
Confidence 8899999999998766 5999999988864
No 67
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.62 E-value=3.2e-15 Score=93.02 Aligned_cols=77 Identities=21% Similarity=0.411 Sum_probs=61.3
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc-----------------------hhhhhhc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG-----------------------KETCNKH 104 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~ 104 (128)
-++++++|+||++||++|++..+.+.++.+++.....++.++.++.++.. ..+++.|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 46889999999999999999999999998887654334777777766431 3567789
Q ss_pred CCCCCCEEEEEe-CCcccccc
Q psy9104 105 GVSGYPTLKIFR-NGQVSKAK 124 (128)
Q Consensus 105 ~v~~~Pt~~~~~-~g~~~~~~ 124 (128)
++.++|++++++ +|+++.+.
T Consensus 96 ~v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 96 KIEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCCCCEEEEECCCCCEEccc
Confidence 999999999997 88766543
No 68
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.60 E-value=7.6e-15 Score=107.77 Aligned_cols=93 Identities=34% Similarity=0.674 Sum_probs=77.8
Q ss_pred CCceEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCC
Q psy9104 32 ESSVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYP 110 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~P 110 (128)
...+..++..+|.+.+ +.+++++|+||++||++|+.+.|.++++++.+.+...++.++.+|++++ . +.. ++++++|
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n-~-~~~-~~i~~~P 421 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN-D-VPP-FEVEGFP 421 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-c-cCC-CCccccC
Confidence 3457788899999987 7789999999999999999999999999999886323599999999987 3 444 9999999
Q ss_pred EEEEEeCCcc--ccccccc
Q psy9104 111 TLKIFRNGQV--SKAKKTE 127 (128)
Q Consensus 111 t~~~~~~g~~--~~~~~g~ 127 (128)
|+++|++|+. ...|.|.
T Consensus 422 t~~~~~~~~~~~~~~~~g~ 440 (462)
T TIGR01130 422 TIKFVPAGKKSEPVPYDGD 440 (462)
T ss_pred EEEEEeCCCCcCceEecCc
Confidence 9999997764 3566664
No 69
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.60 E-value=1.3e-15 Score=92.25 Aligned_cols=81 Identities=25% Similarity=0.453 Sum_probs=58.7
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-------------------chhhhhhcCCCC
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-------------------GKETCNKHGVSG 108 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-------------------~~~~~~~~~v~~ 108 (128)
.++++++++|+++||++|+++.+.+.+..+.......++.++.++.+.. +.++.++|++++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4689999999999999999999999875443222112377787877654 145889999999
Q ss_pred CCEEEEEe-CCcccccccccC
Q psy9104 109 YPTLKIFR-NGQVSKAKKTEL 128 (128)
Q Consensus 109 ~Pt~~~~~-~g~~~~~~~g~~ 128 (128)
+||+++++ +|+++.++.|.+
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS-
T ss_pred cCEEEEEcCCCCEEEEecCCC
Confidence 99999997 899888888853
No 70
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.60 E-value=8.3e-15 Score=87.41 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=67.0
Q ss_pred HHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCC--CCCEEEEEeC--C
Q psy9104 43 FEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS--GYPTLKIFRN--G 118 (128)
Q Consensus 43 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~--~~Pt~~~~~~--g 118 (128)
+......++++++.|+++||++|..+.+.++++++++++. +.|+.+|++++ +.+++.|++. ++|+++++++ |
T Consensus 5 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~-~~~~~~~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 5 FFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF-GRHLEYFGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred HhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh-HHHHHHcCCChhhCCEEEEEecccc
Confidence 3333344789999999999999999999999999999866 99999999998 8999999999 9999999987 6
Q ss_pred ccccc
Q psy9104 119 QVSKA 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
+....
T Consensus 81 ~k~~~ 85 (103)
T cd02982 81 KKYLM 85 (103)
T ss_pred cccCC
Confidence 55443
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.59 E-value=7.9e-15 Score=84.04 Aligned_cols=66 Identities=23% Similarity=0.396 Sum_probs=57.0
Q ss_pred EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcccccccc
Q psy9104 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKT 126 (128)
Q Consensus 53 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 126 (128)
.+..||++||++|+.+.+.+++++++++.. +.+..+|.+++ +++.++|+++++||+++ +|+. ++.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~-~~~~~~~~v~~vPt~~~--~g~~--~~~G 67 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN-PQKAMEYGIMAVPAIVI--NGDV--EFIG 67 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC-HHHHHHcCCccCCEEEE--CCEE--EEec
Confidence 467899999999999999999999887644 89999999998 99999999999999987 6652 4544
No 72
>KOG4277|consensus
Probab=99.58 E-value=2.5e-15 Score=103.34 Aligned_cols=78 Identities=35% Similarity=0.747 Sum_probs=70.8
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCccccccccc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 127 (128)
+....++|.||+|||.+|+++.|.+.+.-.+++..+..+...++|+... +.++.+++++++||+.++++|. ...|.|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiAnefgiqGYPTIk~~kgd~-a~dYRG~ 118 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIANEFGIQGYPTIKFFKGDH-AIDYRGG 118 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhHhhhccCCCceEEEecCCe-eeecCCC
Confidence 5578899999999999999999999999999998888999999999999 9999999999999999998775 5557664
No 73
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.58 E-value=2.8e-14 Score=92.47 Aligned_cols=91 Identities=23% Similarity=0.435 Sum_probs=70.2
Q ss_pred eEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------------------
Q psy9104 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------------------ 96 (128)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------------------ 96 (128)
+...+++.+.....++++++|+||++||++|+...+.+.++.+++.+.+ +.++.++.+..
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~~~~~~~~~~~ 123 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFVNRYGLTFPVA 123 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence 3445555554433467899999999999999999999999999987543 67777776532
Q ss_pred ---chhhhhhcCCCCCCEEEEEe-CCccccccccc
Q psy9104 97 ---GKETCNKHGVSGYPTLKIFR-NGQVSKAKKTE 127 (128)
Q Consensus 97 ---~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~ 127 (128)
+..+.+.|+++.+|++++++ +|+++..+.|.
T Consensus 124 ~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~ 158 (173)
T PRK03147 124 IDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGE 158 (173)
T ss_pred ECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCC
Confidence 25778999999999988886 88888777764
No 74
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.58 E-value=5.2e-14 Score=106.12 Aligned_cols=89 Identities=17% Similarity=0.342 Sum_probs=68.8
Q ss_pred eEEc-ChhhHHHhh----ccCCcEEEEEEcCCCHHHhhhcHHH---HHHHHHhcCCCCCeEEEEEeCCcc---chhhhhh
Q psy9104 35 VLDL-GDSDFEAVI----NQHETALVMFYAPWCGHCKKLKPEY---EKAATDVKGADPPISFVKVDCTEA---GKETCNK 103 (128)
Q Consensus 35 ~~~~-~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~ 103 (128)
+.++ +.+++++.+ .++|+++|+||++||++|+.+++.. .+..+.++ ++.++.+|.+++ +.++.++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~~~~~l~~~ 529 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNAEDVALLKH 529 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCChhhHHHHHH
Confidence 4444 345666665 4579999999999999999998875 45555553 288999999864 2578899
Q ss_pred cCCCCCCEEEEEe-CCccc--cccccc
Q psy9104 104 HGVSGYPTLKIFR-NGQVS--KAKKTE 127 (128)
Q Consensus 104 ~~v~~~Pt~~~~~-~g~~~--~~~~g~ 127 (128)
|+++++||+++|+ +|+++ .++.|+
T Consensus 530 ~~v~g~Pt~~~~~~~G~~i~~~r~~G~ 556 (571)
T PRK00293 530 YNVLGLPTILFFDAQGQEIPDARVTGF 556 (571)
T ss_pred cCCCCCCEEEEECCCCCCcccccccCC
Confidence 9999999999997 88874 567775
No 75
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.58 E-value=1.2e-14 Score=90.55 Aligned_cols=77 Identities=22% Similarity=0.413 Sum_probs=59.8
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc------------------------hhhhhh
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG------------------------KETCNK 103 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~------------------------~~~~~~ 103 (128)
-++++++|.||++||++|+...+.++++.+.+.+...++.++.++.++.. ..+.+.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 35899999999999999999999999998887653234677777665431 245567
Q ss_pred cCCCCCCEEEEEe-CCcccccc
Q psy9104 104 HGVSGYPTLKIFR-NGQVSKAK 124 (128)
Q Consensus 104 ~~v~~~Pt~~~~~-~g~~~~~~ 124 (128)
|++.++|++++++ +|+++.+.
T Consensus 95 ~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred cCCCCCCEEEEECCCCCEEchh
Confidence 9999999999987 78765543
No 76
>PHA02125 thioredoxin-like protein
Probab=99.58 E-value=6.8e-15 Score=83.26 Aligned_cols=60 Identities=32% Similarity=0.572 Sum_probs=51.6
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcccccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKT 126 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 126 (128)
+++||++||++|+.+.+.|+++. +.++.+|.+++ .+++++|+++++||++ +|+.+.++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~-~~l~~~~~v~~~PT~~---~g~~~~~~~G 61 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEG-VELTAKHHIRSLPTLV---NTSTLDRFTG 61 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCC-HHHHHHcCCceeCeEE---CCEEEEEEeC
Confidence 68999999999999999986542 56888999998 9999999999999987 5777777766
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.58 E-value=1.3e-14 Score=89.76 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=62.1
Q ss_pred hHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC-----------------------Cccch
Q psy9104 42 DFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC-----------------------TEAGK 98 (128)
Q Consensus 42 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~-----------------------~~~~~ 98 (128)
.+.....++++++|+||++||++|+...+.++++.+.+. +.++.|+. +.+ .
T Consensus 17 ~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~ 90 (127)
T cd03010 17 TLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGR-----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-G 90 (127)
T ss_pred cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-c
Confidence 344334458899999999999999999999999987752 55555553 233 5
Q ss_pred hhhhhcCCCCCCEEEEEe-CCcccccccccC
Q psy9104 99 ETCNKHGVSGYPTLKIFR-NGQVSKAKKTEL 128 (128)
Q Consensus 99 ~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~~ 128 (128)
.+++.|++.++|+.++++ +|+++.++.|.+
T Consensus 91 ~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 91 RVGIDLGVYGVPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred hHHHhcCCCCCCeEEEECCCceEEEEEeccC
Confidence 678889999999766664 999998888863
No 78
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.56 E-value=5e-14 Score=89.81 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=54.5
Q ss_pred hccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-----------chhh-hhhc---CCCCCCE
Q psy9104 47 INQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-----------GKET-CNKH---GVSGYPT 111 (128)
Q Consensus 47 ~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-----------~~~~-~~~~---~v~~~Pt 111 (128)
+..++..+|.||++||++|++..|.++++++++. +.++.|+.++. +... .+.| ++.++||
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT 121 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA 121 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence 3456778999999999999999999999998873 44545554432 0222 2345 7899999
Q ss_pred EEEEe-CCcc-ccccccc
Q psy9104 112 LKIFR-NGQV-SKAKKTE 127 (128)
Q Consensus 112 ~~~~~-~g~~-~~~~~g~ 127 (128)
.++++ +|+. ...+.|+
T Consensus 122 t~LID~~G~~i~~~~~G~ 139 (153)
T TIGR02738 122 TFLVNVNTRKAYPVLQGA 139 (153)
T ss_pred EEEEeCCCCEEEEEeecc
Confidence 99887 6664 4456664
No 79
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.55 E-value=7.5e-14 Score=91.75 Aligned_cols=75 Identities=20% Similarity=0.377 Sum_probs=58.2
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc----------------------chhhhhhcC
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA----------------------GKETCNKHG 105 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~~~~ 105 (128)
.++++++|.||++||++|++..|.+.++.+. + +.++.|+.+++ +..+.+.|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~--~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc----C--CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 4689999999999999999999999888642 2 66777775433 023445789
Q ss_pred CCCCCEEEEEe-CCcccccccccC
Q psy9104 106 VSGYPTLKIFR-NGQVSKAKKTEL 128 (128)
Q Consensus 106 v~~~Pt~~~~~-~g~~~~~~~g~~ 128 (128)
+.++|+.++++ +|++..++.|.+
T Consensus 140 v~~~P~t~vid~~G~i~~~~~G~~ 163 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRHAGDL 163 (185)
T ss_pred CCcCCeEEEECCCceEEEEEecCC
Confidence 99999877765 999988888863
No 80
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.55 E-value=1.6e-14 Score=89.26 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=58.5
Q ss_pred hhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEe-CCc
Q psy9104 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR-NGQ 119 (128)
Q Consensus 41 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~-~g~ 119 (128)
+.+..+.+++|+++|+|+++||++|+.+...+-+-.+..+..+.++..+.++.+..+.... ..+ .++||++|++ +|+
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~ 91 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLT 91 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCC
Confidence 3444555889999999999999999999887654333222212237777777653311221 123 6899999997 999
Q ss_pred cccccccc
Q psy9104 120 VSKAKKTE 127 (128)
Q Consensus 120 ~~~~~~g~ 127 (128)
++.+..|+
T Consensus 92 vi~~i~Gy 99 (130)
T cd02960 92 VRADITGR 99 (130)
T ss_pred Cccccccc
Confidence 99888886
No 81
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.54 E-value=1.8e-14 Score=96.73 Aligned_cols=82 Identities=22% Similarity=0.278 Sum_probs=64.6
Q ss_pred hHHHhhccCCcEEEEEEc---CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCC
Q psy9104 42 DFEAVINQHETALVMFYA---PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNG 118 (128)
Q Consensus 42 ~~~~~~~~~~~~lv~f~~---~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g 118 (128)
.|...++ +...++.|++ +||++|+.+.|.++++++.+.. .++.++.+|.+++ +.++++|++.++||+++|++|
T Consensus 12 ~~~~~~~-~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~~-~~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 12 LFLKELK-NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPED-KEEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHHHhcC-CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCccc-HHHHHHcCCCccCEEEEEeCC
Confidence 3344444 3444666877 9999999999999999998743 2366777777788 999999999999999999999
Q ss_pred cccc-ccccc
Q psy9104 119 QVSK-AKKTE 127 (128)
Q Consensus 119 ~~~~-~~~g~ 127 (128)
+.+. ++.|.
T Consensus 88 ~~~~~~~~G~ 97 (215)
T TIGR02187 88 KDGGIRYTGI 97 (215)
T ss_pred eeeEEEEeec
Confidence 8874 77773
No 82
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.52 E-value=1.1e-13 Score=83.19 Aligned_cols=86 Identities=24% Similarity=0.433 Sum_probs=68.4
Q ss_pred ChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc----------------------
Q psy9104 39 GDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---------------------- 96 (128)
Q Consensus 39 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---------------------- 96 (128)
+++.+...-..+++++++||++||++|+...+.+.++.+.+.. .++.++.++.+.+
T Consensus 8 ~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred CCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 3333443333488999999999999999999999999999863 3388888888762
Q ss_pred chhhhhhcCCCCCCEEEEEe-CCcccccccc
Q psy9104 97 GKETCNKHGVSGYPTLKIFR-NGQVSKAKKT 126 (128)
Q Consensus 97 ~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g 126 (128)
+..+.+.|++.++|++++++ +|+.+.++.|
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 15688999999999999987 8988888776
No 83
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.51 E-value=6.4e-14 Score=77.44 Aligned_cols=60 Identities=25% Similarity=0.399 Sum_probs=52.2
Q ss_pred EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCc
Q psy9104 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 53 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
-+..|+++||++|+.+++.++++..... ++.+..+|.+++ ++++++|++.++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~-~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEF-PDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccC-HhHHHHcCCcccCEEEE--CCE
Confidence 3678999999999999999999976532 389999999998 89999999999999987 554
No 84
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.51 E-value=9.3e-14 Score=93.30 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=62.7
Q ss_pred EcChhhHHHhhccCCcE-EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEE
Q psy9104 37 DLGDSDFEAVINQHETA-LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115 (128)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~ 115 (128)
.++++..+.....++|+ ++.||++||++|+.+.+.+++++.... ++.+..+|.+++ ++++++|++.++||++++
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~----~i~~~~vD~~~~-~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND----KILGEMIEANEN-PDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC----ceEEEEEeCCCC-HHHHHHhCCccCCEEEEe
Confidence 45555555544445555 455999999999999999998887732 388999999999 999999999999999999
Q ss_pred eCCc
Q psy9104 116 RNGQ 119 (128)
Q Consensus 116 ~~g~ 119 (128)
++|+
T Consensus 194 ~~~~ 197 (215)
T TIGR02187 194 KGVE 197 (215)
T ss_pred cCCE
Confidence 8775
No 85
>KOG0191|consensus
Probab=99.51 E-value=8.5e-14 Score=100.70 Aligned_cols=87 Identities=44% Similarity=0.850 Sum_probs=74.4
Q ss_pred EEcChhhHHHh-hccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 36 LDLGDSDFEAV-INQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 36 ~~~~~~~~~~~-~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
..+....+... ...+++.+|+||++||++|+++.+.+.++++.+.+. +.+..||++++ .+++++|+++++||+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~vd~~~~-~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAVDCDEH-KDLCEKYGIQGFPTLKV 107 (383)
T ss_pred hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEeCchhh-HHHHHhcCCccCcEEEE
Confidence 34444444444 488999999999999999999999999999999875 99999999999 99999999999999999
Q ss_pred EeCCcccccccc
Q psy9104 115 FRNGQVSKAKKT 126 (128)
Q Consensus 115 ~~~g~~~~~~~g 126 (128)
+.+|..+..|.|
T Consensus 108 f~~~~~~~~~~~ 119 (383)
T KOG0191|consen 108 FRPGKKPIDYSG 119 (383)
T ss_pred EcCCCceeeccC
Confidence 998855655655
No 86
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.51 E-value=1.2e-13 Score=85.40 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=63.6
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC-----cc---------------------chhhhh
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT-----EA---------------------GKETCN 102 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~-----~~---------------------~~~~~~ 102 (128)
++++++|+||++||++|++..+.++++.+++...+ +.++.|+.+ .. +..+.+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 67999999999999999999999999999987543 777777542 11 245667
Q ss_pred hcCCCCCCEEEEEe-CCccccccccc
Q psy9104 103 KHGVSGYPTLKIFR-NGQVSKAKKTE 127 (128)
Q Consensus 103 ~~~v~~~Pt~~~~~-~g~~~~~~~g~ 127 (128)
.|+++++|+.++++ +|+++..+.|+
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEecC
Confidence 79999999999886 89999888886
No 87
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2e-13 Score=85.47 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=67.2
Q ss_pred hHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---------------chhhhhhcCC
Q psy9104 42 DFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---------------GKETCNKHGV 106 (128)
Q Consensus 42 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---------------~~~~~~~~~v 106 (128)
+...+...++..+++|.++.|++|-+++..+..-.+-.+....++.++.+++... ..++++.|++
T Consensus 34 d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 34 DNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred HHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 3444457889999999999999999998877554333333334588888887643 2589999999
Q ss_pred CCCCEEEEEe-CCcccccccccC
Q psy9104 107 SGYPTLKIFR-NGQVSKAKKTEL 128 (128)
Q Consensus 107 ~~~Pt~~~~~-~g~~~~~~~g~~ 128 (128)
+++||+++++ +|+.+....|++
T Consensus 114 rstPtfvFfdk~Gk~Il~lPGY~ 136 (182)
T COG2143 114 RSTPTFVFFDKTGKTILELPGYM 136 (182)
T ss_pred ccCceEEEEcCCCCEEEecCCCC
Confidence 9999999997 888888888864
No 88
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.49 E-value=1.2e-13 Score=78.33 Aligned_cols=58 Identities=21% Similarity=0.453 Sum_probs=49.1
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCccc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVS 121 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 121 (128)
|.||++||++|+.+.+.++++.+++... +.++.+| + .+.+.+|++.++||+++ ||+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~~v~--~--~~~a~~~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGID---AEFEKVT--D--MNEILEAGVTATPGVAV--DGELV 60 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEEEeC--C--HHHHHHcCCCcCCEEEE--CCEEE
Confidence 7899999999999999999999998654 7787777 2 34578899999999999 88765
No 89
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.49 E-value=2.1e-13 Score=83.73 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=62.8
Q ss_pred EcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC---------------------Cc
Q psy9104 37 DLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC---------------------TE 95 (128)
Q Consensus 37 ~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~---------------------~~ 95 (128)
..+++.+......+++++|.||++||++|+.+.+.+.++.+... +..+.+|. ++
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-----VVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-----EEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 44455555555567999999999999999999999999887632 33333332 23
Q ss_pred cchhhhhhcCCCCCCEEEEEeCCccccccccc
Q psy9104 96 AGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 96 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 127 (128)
+ ..+++.|++.++|+++++++|++...+.|.
T Consensus 82 ~-~~~~~~~~i~~~P~~~vid~~gi~~~~~g~ 112 (123)
T cd03011 82 D-GVISARWGVSVTPAIVIVDPGGIVFVTTGV 112 (123)
T ss_pred C-cHHHHhCCCCcccEEEEEcCCCeEEEEecc
Confidence 3 578999999999999999855576666663
No 90
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.45 E-value=5.6e-13 Score=80.84 Aligned_cols=70 Identities=26% Similarity=0.334 Sum_probs=52.5
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc-c------------------chhhhhhcCCCCC
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE-A------------------GKETCNKHGVSGY 109 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~-~------------------~~~~~~~~~v~~~ 109 (128)
++++++|.||++||++|+...|.++++.+.+.+. +.++.+..+. + +..+.+.|+++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 4889999999999999999999999988876543 5555552111 1 2456667889999
Q ss_pred CEEEEEe-CCccc
Q psy9104 110 PTLKIFR-NGQVS 121 (128)
Q Consensus 110 Pt~~~~~-~g~~~ 121 (128)
|+.++++ +|+++
T Consensus 97 P~~~vid~~G~v~ 109 (114)
T cd02967 97 PYAVLLDEAGVIA 109 (114)
T ss_pred CeEEEECCCCeEE
Confidence 9988887 77643
No 91
>KOG1731|consensus
Probab=99.45 E-value=1.2e-13 Score=101.63 Aligned_cols=86 Identities=34% Similarity=0.809 Sum_probs=76.8
Q ss_pred CCCceEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc-cchhhhhhcCCCC
Q psy9104 31 DESSVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE-AGKETCNKHGVSG 108 (128)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~v~~ 108 (128)
.++++++++.++|..++ .+.+..+|+||++||++|+++.|.++++++.......-+.++.|||-+ .|..+|++++|+.
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 35789999999999998 555699999999999999999999999999988887779999999853 2489999999999
Q ss_pred CCEEEEEe
Q psy9104 109 YPTLKIFR 116 (128)
Q Consensus 109 ~Pt~~~~~ 116 (128)
+|++.+|.
T Consensus 117 ~Ptlryf~ 124 (606)
T KOG1731|consen 117 YPTLRYFP 124 (606)
T ss_pred CceeeecC
Confidence 99999986
No 92
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.43 E-value=7.5e-13 Score=91.64 Aligned_cols=69 Identities=12% Similarity=0.225 Sum_probs=55.5
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc----------chhhhhhcCCCCCCEEEEEeC-
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA----------GKETCNKHGVSGYPTLKIFRN- 117 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~----------~~~~~~~~~v~~~Pt~~~~~~- 117 (128)
.+++++|+||++||++|+.+.|.++++++++. +.++.|+.+.. +..++++|+++++||++++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 47899999999999999999999999999874 44555555431 156889999999999999984
Q ss_pred Ccccc
Q psy9104 118 GQVSK 122 (128)
Q Consensus 118 g~~~~ 122 (128)
|+.+.
T Consensus 240 ~~~v~ 244 (271)
T TIGR02740 240 PNQFT 244 (271)
T ss_pred CCEEE
Confidence 55443
No 93
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.42 E-value=8.5e-13 Score=75.84 Aligned_cols=72 Identities=26% Similarity=0.494 Sum_probs=53.0
Q ss_pred hhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHH---HHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEe
Q psy9104 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEY---EKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 40 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~ 116 (128)
.+.++++.+++++++|+|+++||++|+.+...+ .++.+.+... +..+.+|.++. ....+..+ .++|++++++
T Consensus 7 ~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~~-~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 7 EEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDDE-DPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTTH-HHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCCC-ChhHHhCC-ccCCEEEEeC
Confidence 344556668999999999999999999998877 3344434433 99999999877 33322222 6799999985
No 94
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.42 E-value=1.2e-12 Score=82.67 Aligned_cols=88 Identities=22% Similarity=0.378 Sum_probs=67.6
Q ss_pred cChhhHHHhhccCCcEEEEEEcC-CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------------------
Q psy9104 38 LGDSDFEAVINQHETALVMFYAP-WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-------------------- 96 (128)
Q Consensus 38 ~~~~~~~~~~~~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-------------------- 96 (128)
.+++.+...--++++++|.||++ |||+|+...|.+.++.+.+...+ +.++.+..+.+
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~ 93 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPPVREFLKKYGINFPVLSDP 93 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHHHHHHHHHTTTTSEEEEET
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHHHHHHHHhhCCCceEEech
Confidence 44444443345789999999999 99999999999999988877654 66666665443
Q ss_pred chhhhhhcCCC---------CCCEEEEEe-CCccccccccc
Q psy9104 97 GKETCNKHGVS---------GYPTLKIFR-NGQVSKAKKTE 127 (128)
Q Consensus 97 ~~~~~~~~~v~---------~~Pt~~~~~-~g~~~~~~~g~ 127 (128)
+..+.++|++. .+|++++++ +|+++....|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 94 DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 25788889988 999987775 99888777664
No 95
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.42 E-value=9.4e-13 Score=85.67 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=56.4
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc----------------------chhhhhhcC
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA----------------------GKETCNKHG 105 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~~~~ 105 (128)
.++++++|+||++||++|+++.|.++++.+. + +.++.|+.++. +..+.++|+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~--~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD----G--LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----C--CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 4689999999999999999999999888653 1 55555554211 145677899
Q ss_pred CCCCCEEEEE-eCCccccccccc
Q psy9104 106 VSGYPTLKIF-RNGQVSKAKKTE 127 (128)
Q Consensus 106 v~~~Pt~~~~-~~g~~~~~~~g~ 127 (128)
+.++|+.+++ ++|+++.++.|.
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~ 157 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGP 157 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEecc
Confidence 9999976666 599988888775
No 96
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.41 E-value=1.8e-12 Score=80.24 Aligned_cols=91 Identities=10% Similarity=0.136 Sum_probs=80.5
Q ss_pred ceEEcChhhHHHhhccCCcEEEEEEcC--CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCE
Q psy9104 34 SVLDLGDSDFEAVINQHETALVMFYAP--WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPT 111 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~lv~f~~~--~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt 111 (128)
++..++..+++..+..++..+|+|-++ -+|.+-...-.|+++++++.+ .++.+++||++++ +.++.+|+|+++||
T Consensus 18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~-~~LA~~fgV~siPT 94 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQS-EAIGDRFGVFRFPA 94 (132)
T ss_pred CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCC-HHHHHHcCCccCCE
Confidence 667778889999998888888888875 578999999999999999963 2399999999999 99999999999999
Q ss_pred EEEEeCCccccccccc
Q psy9104 112 LKIFRNGQVSKAKKTE 127 (128)
Q Consensus 112 ~~~~~~g~~~~~~~g~ 127 (128)
+++|+||+.+.+..|.
T Consensus 95 Ll~FkdGk~v~~i~G~ 110 (132)
T PRK11509 95 TLVFTGGNYRGVLNGI 110 (132)
T ss_pred EEEEECCEEEEEEeCc
Confidence 9999999999988874
No 97
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=1.7e-12 Score=103.62 Aligned_cols=77 Identities=22% Similarity=0.411 Sum_probs=63.5
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC---Cc--c---------------------chhhhh
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC---TE--A---------------------GKETCN 102 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~---~~--~---------------------~~~~~~ 102 (128)
++++++|.||++||++|+...|.|+++.+++++. ++.++.|.. ++ . +..+.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 5899999999999999999999999999998754 377777742 11 0 145678
Q ss_pred hcCCCCCCEEEEEe-CCccccccccc
Q psy9104 103 KHGVSGYPTLKIFR-NGQVSKAKKTE 127 (128)
Q Consensus 103 ~~~v~~~Pt~~~~~-~g~~~~~~~g~ 127 (128)
+|+++++|++++++ +|+++.++.|+
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~ 522 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGE 522 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecc
Confidence 89999999999995 99999888885
No 98
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.37 E-value=2.2e-12 Score=75.20 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=56.3
Q ss_pred CCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcccc
Q psy9104 50 HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122 (128)
Q Consensus 50 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 122 (128)
+...+..|+++||++|....+.++++....+ ++.+..+|.++. ++++++|++.++||+++ ||+.+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~-~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALF-QDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhC-HHHHHHcCCccCCEEEE--CCEEEE
Confidence 3445778999999999999999999987754 389999999999 99999999999999976 676543
No 99
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.37 E-value=1.8e-12 Score=78.93 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=62.7
Q ss_pred HHHhhccCCcEEEEEEcCCCHHHhhhcHHHHH---HHHHhcCCCCCeEEEEEeCCc-cchhhhhhcCCCCCCEEEEEe--
Q psy9104 43 FEAVINQHETALVMFYAPWCGHCKKLKPEYEK---AATDVKGADPPISFVKVDCTE-AGKETCNKHGVSGYPTLKIFR-- 116 (128)
Q Consensus 43 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~---~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~~~~~-- 116 (128)
++.+.+++++++|+|+++||++|+.+....-. +.+.+.. ++.+..+|.++ ++..+++.|++.++|++++++
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~ 86 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR 86 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc
Confidence 33444789999999999999999998764322 2333332 38899999874 237789999999999999986
Q ss_pred CCccccccccc
Q psy9104 117 NGQVSKAKKTE 127 (128)
Q Consensus 117 ~g~~~~~~~g~ 127 (128)
+|+.+.+..|.
T Consensus 87 ~g~~l~~~~G~ 97 (114)
T cd02958 87 TGEVLKVWSGN 97 (114)
T ss_pred cCcEeEEEcCC
Confidence 58888888875
No 100
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.35 E-value=4e-12 Score=94.25 Aligned_cols=90 Identities=18% Similarity=0.335 Sum_probs=69.3
Q ss_pred EEcChh-hHHHhhccCC--cEEEEEEcCCCHHHhhhcHHHHH-HHHHhcCCCCCeEEEEEeCCccc---hhhhhhcCCCC
Q psy9104 36 LDLGDS-DFEAVINQHE--TALVMFYAPWCGHCKKLKPEYEK-AATDVKGADPPISFVKVDCTEAG---KETCNKHGVSG 108 (128)
Q Consensus 36 ~~~~~~-~~~~~~~~~~--~~lv~f~~~~C~~C~~~~~~l~~-~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~~v~~ 108 (128)
.+++.. ++++.+.+++ ||+|.||++||-.||.+++..-. -....+ -.+++..++|..+++ .++.++|++-+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~--~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA--LQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh--cCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 455555 7888885555 99999999999999999887663 222222 244999999999875 45678999999
Q ss_pred CCEEEEEe-CCccccccccc
Q psy9104 109 YPTLKIFR-NGQVSKAKKTE 127 (128)
Q Consensus 109 ~Pt~~~~~-~g~~~~~~~g~ 127 (128)
.|++++|+ +|++....+|.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf 554 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGF 554 (569)
T ss_pred CCEEEEECCCCCcCcCCcce
Confidence 99999998 88877666654
No 101
>KOG0914|consensus
Probab=99.32 E-value=1.3e-11 Score=81.41 Aligned_cols=92 Identities=18% Similarity=0.351 Sum_probs=77.7
Q ss_pred CCCceEEc-ChhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCC
Q psy9104 31 DESSVLDL-GDSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS 107 (128)
Q Consensus 31 ~~~~~~~~-~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~ 107 (128)
..+.+..+ +.+.+++.+ ++...++|.|++.|.|.|+++.|.+.+++.++...+ +.|.+||+..- ++.+.+|+|+
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf-pd~a~kfris 198 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF-PDVAAKFRIS 198 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC-cChHHheeec
Confidence 45566777 556666666 566788999999999999999999999999998654 99999999999 9999999875
Q ss_pred ------CCCEEEEEeCCccccccc
Q psy9104 108 ------GYPTLKIFRNGQVSKAKK 125 (128)
Q Consensus 108 ------~~Pt~~~~~~g~~~~~~~ 125 (128)
..||+++|.+|+++.+..
T Consensus 199 ~s~~srQLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 199 LSPGSRQLPTYILFQKGKEVSRRP 222 (265)
T ss_pred cCcccccCCeEEEEccchhhhcCc
Confidence 589999999999987753
No 102
>KOG0191|consensus
Probab=99.31 E-value=1.2e-11 Score=89.65 Aligned_cols=91 Identities=40% Similarity=0.722 Sum_probs=78.6
Q ss_pred ceEEcChhhHHHhh-ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEE
Q psy9104 34 SVLDLGDSDFEAVI-NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112 (128)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~ 112 (128)
.+.+++..++...+ ..+...+|.||+|||++|+.+.+.+++++..+.. ...+.+..+|++.. ..++++++++.+||+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~-~~~~~~~~v~~~Pt~ 222 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVH-KSLASRLEVRGYPTL 222 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchH-HHHhhhhcccCCceE
Confidence 38888889998876 7788999999999999999999999999998875 35599999999877 899999999999999
Q ss_pred EEEeCCcc-cccccc
Q psy9104 113 KIFRNGQV-SKAKKT 126 (128)
Q Consensus 113 ~~~~~g~~-~~~~~g 126 (128)
.+|++|.. ...|.|
T Consensus 223 ~~f~~~~~~~~~~~~ 237 (383)
T KOG0191|consen 223 KLFPPGEEDIYYYSG 237 (383)
T ss_pred EEecCCCcccccccc
Confidence 99998877 444433
No 103
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.29 E-value=2.1e-11 Score=79.40 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=52.5
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------------chhhhhhcCC--CCCCEEEEEe-CC
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------------GKETCNKHGV--SGYPTLKIFR-NG 118 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------------~~~~~~~~~v--~~~Pt~~~~~-~g 118 (128)
+|.||++|||+|++..|.+.++++++. +.++.|+.++. ...+.+.|++ .++|+.++++ +|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 888999999999999999999999973 55555555432 1235668885 6999988886 88
Q ss_pred ccc-cccccc
Q psy9104 119 QVS-KAKKTE 127 (128)
Q Consensus 119 ~~~-~~~~g~ 127 (128)
++. ..+.|.
T Consensus 148 ~i~~~~~~G~ 157 (181)
T PRK13728 148 LEALPLLQGA 157 (181)
T ss_pred cEEEEEEECC
Confidence 774 457775
No 104
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.27 E-value=1.3e-11 Score=81.45 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=52.1
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-----------------chhhhhhcCCCCCC
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-----------------GKETCNKHGVSGYP 110 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-----------------~~~~~~~~~v~~~P 110 (128)
.++++++|+||++|||.|++..|.+.++.+... .++.++..|..+. +.++.+.|++..+|
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P 148 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIP 148 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccc
Confidence 467899999999999999999999999876532 2244443210000 24667889999999
Q ss_pred EEEEEe-CCcccc
Q psy9104 111 TLKIFR-NGQVSK 122 (128)
Q Consensus 111 t~~~~~-~g~~~~ 122 (128)
+.++++ +|++..
T Consensus 149 ~~~lID~~G~I~~ 161 (189)
T TIGR02661 149 YGVLLDQDGKIRA 161 (189)
T ss_pred eEEEECCCCeEEE
Confidence 987776 887654
No 105
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.25 E-value=5.7e-11 Score=77.68 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=57.6
Q ss_pred HhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEE------EEEeCCcc----------------------
Q psy9104 45 AVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISF------VKVDCTEA---------------------- 96 (128)
Q Consensus 45 ~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~------~~vd~~~~---------------------- 96 (128)
...-+++..+|.|||.||++|+...|.+.++.+.- +.+ ..||.++.
T Consensus 54 ~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~------~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~ 127 (184)
T TIGR01626 54 SAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAK------FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWS 127 (184)
T ss_pred HHHcCCCEEEEEEEecCCChhhccchHHHHHHHcC------CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcc
Confidence 33345999999999999999999999999995431 333 44554432
Q ss_pred ------chhhhhhcCCCCCCEE-EEEe-CCcccccccccC
Q psy9104 97 ------GKETCNKHGVSGYPTL-KIFR-NGQVSKAKKTEL 128 (128)
Q Consensus 97 ------~~~~~~~~~v~~~Pt~-~~~~-~g~~~~~~~g~~ 128 (128)
+......|++.++|+. ++++ +|+++..+.|++
T Consensus 128 ~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l 167 (184)
T TIGR01626 128 QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGAL 167 (184)
T ss_pred eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCC
Confidence 1245668899999765 5665 999999988864
No 106
>smart00594 UAS UAS domain.
Probab=99.24 E-value=3.9e-11 Score=73.87 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=62.6
Q ss_pred ChhhHHHhh----ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-chhhhhhcCCCCCCEEE
Q psy9104 39 GDSDFEAVI----NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-GKETCNKHGVSGYPTLK 113 (128)
Q Consensus 39 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~v~~~Pt~~ 113 (128)
-..++++++ +++|+++|+|+++||++|+.+...+-.........+.++.+..+|.+.. +..+++.|+++++|+++
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 344555544 7789999999999999999987754333222221123488888888744 36789999999999999
Q ss_pred EEe-CC-----ccccccccc
Q psy9104 114 IFR-NG-----QVSKAKKTE 127 (128)
Q Consensus 114 ~~~-~g-----~~~~~~~g~ 127 (128)
+++ +| +.+.+..|.
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~ 111 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGE 111 (122)
T ss_pred EEecCCCceeEEEeccccCC
Confidence 986 55 246666664
No 107
>KOG2501|consensus
Probab=99.24 E-value=3.2e-11 Score=76.20 Aligned_cols=75 Identities=25% Similarity=0.461 Sum_probs=62.7
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------------------------chhhhhh
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------------------------GKETCNK 103 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~~~ 103 (128)
-.++.+.++|.+.|||+|+.+-|.+.+..++....+..+.++.|+.|.+ -..+.++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 3579999999999999999999999999999887766777787877755 1567789
Q ss_pred cCCCCCCEEEEEe-CCcccc
Q psy9104 104 HGVSGYPTLKIFR-NGQVSK 122 (128)
Q Consensus 104 ~~v~~~Pt~~~~~-~g~~~~ 122 (128)
|++.++|++++.+ +|+.+.
T Consensus 111 y~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVT 130 (157)
T ss_pred cccCcCceeEEecCCCCEeh
Confidence 9999999998876 886543
No 108
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.20 E-value=5e-11 Score=79.21 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=43.5
Q ss_pred EEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC
Q psy9104 36 LDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93 (128)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~ 93 (128)
...+++.+....-++++++|.||++||++|++..|.+.++.+.+.+.+ +.++.|++
T Consensus 25 ~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~ 80 (199)
T PTZ00056 25 KTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPT 80 (199)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecc
Confidence 334444333333468999999999999999999999999999987654 88888875
No 109
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.18 E-value=7.2e-11 Score=75.27 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=37.3
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~ 93 (128)
-++++++|.||++||+ |+...|.++++.+++.+.+ +.++.|+.
T Consensus 20 ~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~ 62 (152)
T cd00340 20 YKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPC 62 (152)
T ss_pred hCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEecc
Confidence 3589999999999999 9999999999999987544 88888865
No 110
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.16 E-value=1.7e-10 Score=78.29 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=43.2
Q ss_pred EcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 37 DLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 37 ~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
..+++.+...--++++++|.||++||+.|....|.|.++.+++.+.+ +.++.|+++
T Consensus 86 d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d 141 (236)
T PLN02399 86 DIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCN 141 (236)
T ss_pred CCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecc
Confidence 34444333222357999999999999999999999999999987654 788888753
No 111
>KOG0913|consensus
Probab=99.15 E-value=1.1e-11 Score=82.46 Aligned_cols=92 Identities=22% Similarity=0.399 Sum_probs=79.9
Q ss_pred cCCCceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCC
Q psy9104 30 CDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGY 109 (128)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~ 109 (128)
...+.+..++.+++...++ +-.+++|+++|||.|+...+.+++.+..-.+ ..+....||...+ +.+.-+|-++..
T Consensus 21 ~r~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~n-pgLsGRF~vtaL 95 (248)
T KOG0913|consen 21 RRSSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTN-PGLSGRFLVTAL 95 (248)
T ss_pred cccceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEec-cccceeeEEEec
Confidence 3455789999999998884 5689999999999999999999998877555 3489999999999 999999999999
Q ss_pred CEEEEEeCCccccccccc
Q psy9104 110 PTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 110 Pt~~~~~~g~~~~~~~g~ 127 (128)
|||+-.++|. ..+|.|+
T Consensus 96 ptIYHvkDGe-Frrysga 112 (248)
T KOG0913|consen 96 PTIYHVKDGE-FRRYSGA 112 (248)
T ss_pred ceEEEeeccc-cccccCc
Confidence 9999999994 7778774
No 112
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.15 E-value=3e-10 Score=67.83 Aligned_cols=72 Identities=31% Similarity=0.609 Sum_probs=62.6
Q ss_pred CCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC-ccchhhhhhcC--CCCCCEEEEEeCCccccccc
Q psy9104 50 HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT-EAGKETCNKHG--VSGYPTLKIFRNGQVSKAKK 125 (128)
Q Consensus 50 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~ 125 (128)
++++++.||++||++|+...|.+.++.+.+... +.+..+|.. .. ..+...|+ +..+|+++++.+|+.+..+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 106 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDDEN-PDLAAEFGVAVRSIPTLLLFKDGKEVDRLV 106 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCCCC-hHHHHHHhhhhccCCeEEEEeCcchhhhhh
Confidence 789999999999999999999999999998763 889999997 66 88999999 99999999888887654443
No 113
>PLN02412 probable glutathione peroxidase
Probab=99.14 E-value=1.8e-10 Score=74.63 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=38.7
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
++++++|.||++||+.|++..+.|.++.+.+.+.+ +.++.|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEeccc
Confidence 57999999999999999999999999999998654 888888753
No 114
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.14 E-value=3.6e-10 Score=77.96 Aligned_cols=88 Identities=19% Similarity=0.353 Sum_probs=69.9
Q ss_pred CceEEcC-hhhHHHhhc---cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCC
Q psy9104 33 SSVLDLG-DSDFEAVIN---QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108 (128)
Q Consensus 33 ~~~~~~~-~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~ 108 (128)
..+.+++ ++.|.+++. ++..|||+||.+.++.|..+...|..++..++. +.|++|..... + +..+|....
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~-~-~~~~f~~~~ 198 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC-P-ASENFPDKN 198 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC-C-TTTTS-TTC
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc-C-cccCCcccC
Confidence 4577885 577888873 345799999999999999999999999999876 89999998877 4 889999999
Q ss_pred CCEEEEEeCCcccccccc
Q psy9104 109 YPTLKIFRNGQVSKAKKT 126 (128)
Q Consensus 109 ~Pt~~~~~~g~~~~~~~g 126 (128)
+||+++|++|..+..+.|
T Consensus 199 LPtllvYk~G~l~~~~V~ 216 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVG 216 (265)
T ss_dssp -SEEEEEETTEEEEEECT
T ss_pred CCEEEEEECCEEEEeEEe
Confidence 999999999998887765
No 115
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.13 E-value=2.5e-10 Score=71.48 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=61.1
Q ss_pred cCCcEEEEEE-cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------------------chhhhhhcCCC
Q psy9104 49 QHETALVMFY-APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------------------GKETCNKHGVS 107 (128)
Q Consensus 49 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------------------~~~~~~~~~v~ 107 (128)
++++++|.|| +.||+.|....+.+.++.+.+...+ +.++.|..+.. +..+.+.|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 4889999999 6899999999999999998887543 66666665433 24677788888
Q ss_pred CC---------CEEEEEe-CCccccccccc
Q psy9104 108 GY---------PTLKIFR-NGQVSKAKKTE 127 (128)
Q Consensus 108 ~~---------Pt~~~~~-~g~~~~~~~g~ 127 (128)
.. |+.++++ +|+++..+.|.
T Consensus 100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~ 129 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKV 129 (140)
T ss_pred cccccccCCcceeEEEECCCCEEEEEEecC
Confidence 87 8888886 89988888775
No 116
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.13 E-value=8.1e-11 Score=75.25 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=59.3
Q ss_pred ccCCCceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHH---HHHHhcCCCCCeEEEEEeCCccchhhhhhc-
Q psy9104 29 SCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEK---AATDVKGADPPISFVKVDCTEAGKETCNKH- 104 (128)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~---~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~- 104 (128)
+...-+|...+++.++.+-+++|+++|.++.+||..|+.|..+.-+ +++.+.. +++-++||.++. +++.+.|
T Consensus 16 a~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDree~-Pdid~~y~ 91 (163)
T PF03190_consen 16 AHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDREER-PDIDKIYM 91 (163)
T ss_dssp TTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEETTT--HHHHHHHH
T ss_pred ccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEeccccC-ccHHHHHH
Confidence 3455567788888999999999999999999999999999763322 3333332 389999999999 9998888
Q ss_pred -------CCCCCCEEEEEe-CCcccc
Q psy9104 105 -------GVSGYPTLKIFR-NGQVSK 122 (128)
Q Consensus 105 -------~v~~~Pt~~~~~-~g~~~~ 122 (128)
+..++|+.+++. +|+++.
T Consensus 92 ~~~~~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 92 NAVQAMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp HHHHHHHS---SSEEEEE-TTS-EEE
T ss_pred HHHHHhcCCCCCCceEEECCCCCeee
Confidence 788999988886 887653
No 117
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.10 E-value=5.7e-10 Score=72.36 Aligned_cols=73 Identities=16% Similarity=0.378 Sum_probs=58.8
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc-------c---------------------chh
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE-------A---------------------GKE 99 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~-------~---------------------~~~ 99 (128)
.+++++||+||++|||.|....+.+.++.+++.+.+ +.++.++.+. . +..
T Consensus 23 ~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 23 ADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 368899999999999999999999999999987533 7777777643 1 245
Q ss_pred hhhhcCCCCCCEEEEEe-CCcccc
Q psy9104 100 TCNKHGVSGYPTLKIFR-NGQVSK 122 (128)
Q Consensus 100 ~~~~~~v~~~Pt~~~~~-~g~~~~ 122 (128)
+.+.|++..+|++++++ +|+++.
T Consensus 101 ~~~~~~v~~~P~~~lid~~G~v~~ 124 (171)
T cd02969 101 VAKAYGAACTPDFFLFDPDGKLVY 124 (171)
T ss_pred HHHHcCCCcCCcEEEECCCCeEEE
Confidence 67788999999999886 887653
No 118
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.10 E-value=6.9e-10 Score=67.99 Aligned_cols=70 Identities=16% Similarity=0.524 Sum_probs=57.8
Q ss_pred cCCcEEEEEEcC-CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------------------chhhhhhcCCC
Q psy9104 49 QHETALVMFYAP-WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------------------GKETCNKHGVS 107 (128)
Q Consensus 49 ~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------------------~~~~~~~~~v~ 107 (128)
++++++|.||+. ||+.|+...+.+.++.++++..+ +.++.|+.+.. +..+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 679999999999 99999999999999999988544 88888877644 25677788888
Q ss_pred ------CCCEEEEEe-CCcc
Q psy9104 108 ------GYPTLKIFR-NGQV 120 (128)
Q Consensus 108 ------~~Pt~~~~~-~g~~ 120 (128)
..|++++++ +|++
T Consensus 102 ~~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp ETTTSEESEEEEEEETTSBE
T ss_pred cccCCceEeEEEEECCCCEE
Confidence 899988887 6654
No 119
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.03 E-value=2.3e-09 Score=57.26 Aligned_cols=60 Identities=38% Similarity=0.776 Sum_probs=49.1
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhh---hcCCCCCCEEEEEeCC
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCN---KHGVSGYPTLKIFRNG 118 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~---~~~v~~~Pt~~~~~~g 118 (128)
++.|+++||++|++..+.+.++ +... .++.+..+|+++. ....+ .+++..+|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN---KGVKFEAVDVDED-PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC---CCcEEEEEEcCCC-hHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3322 3489999999887 54443 7899999999999876
No 120
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.02 E-value=9.4e-10 Score=70.16 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=42.4
Q ss_pred cChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC
Q psy9104 38 LGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93 (128)
Q Consensus 38 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~ 93 (128)
.+++.+...--++++++|.||++||++|+...|.+.++.+++...+ +.++.+++
T Consensus 10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~ 63 (153)
T TIGR02540 10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPC 63 (153)
T ss_pred CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEec
Confidence 3344443333467899999999999999999999999999997644 88888875
No 121
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.02 E-value=2.7e-09 Score=67.31 Aligned_cols=76 Identities=13% Similarity=0.269 Sum_probs=54.6
Q ss_pred cCCcEEEE-EEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------------------chhhhhhcCCC
Q psy9104 49 QHETALVM-FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------------------GKETCNKHGVS 107 (128)
Q Consensus 49 ~~~~~lv~-f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------------------~~~~~~~~~v~ 107 (128)
.+++++|. |+++||+.|+...+.|.++.+++...+ +.++.|+.+.. +..+.+.|++.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~ 99 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLV 99 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCce
Confidence 34555555 569999999999999999999987543 77777776543 24566677773
Q ss_pred -----------------------------CCCEEEEEe-CCcccccccc
Q psy9104 108 -----------------------------GYPTLKIFR-NGQVSKAKKT 126 (128)
Q Consensus 108 -----------------------------~~Pt~~~~~-~g~~~~~~~g 126 (128)
..|+.++++ +|++...+.|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 100 RSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred ecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 678877776 7776665554
No 122
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.01 E-value=1.6e-09 Score=67.29 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=47.3
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhc---CCCCCCEEEEEe-CCccccc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKH---GVSGYPTLKIFR-NGQVSKA 123 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~---~v~~~Pt~~~~~-~g~~~~~ 123 (128)
...+..++.|..+||++|....|.+.++++..++ +.+-.+..+++ .++..+| +..++|++++++ +|+++.+
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~----i~~~~i~rd~~-~el~~~~lt~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANPN----IEVRIILRDEN-KELMDQYLTNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT----EEEEEE-HHHH-HHHTTTTTT-SS--SSEEEEE-TT--EEEE
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC----CeEEEEEecCC-hhHHHHHHhCCCeecCEEEEEcCCCCEeEE
Confidence 3456688999999999999999999999998542 66666666666 6665554 678999999996 6777766
Q ss_pred cc
Q psy9104 124 KK 125 (128)
Q Consensus 124 ~~ 125 (128)
+.
T Consensus 114 wg 115 (129)
T PF14595_consen 114 WG 115 (129)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 123
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.99 E-value=1.4e-09 Score=62.26 Aligned_cols=64 Identities=28% Similarity=0.385 Sum_probs=47.6
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccch----hhhhhcCCCCCCEEEEEeCCcccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK----ETCNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
++.|+++|||+|+++++.+.+.. .+. .+.++.+|.+++.. .+.+.++...+|++++ +|+.+..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~ 68 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGC 68 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCH
Confidence 47899999999999999998876 222 27788888765522 3566679999999865 67765543
No 124
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.99 E-value=1.3e-09 Score=61.37 Aligned_cols=61 Identities=23% Similarity=0.530 Sum_probs=44.3
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhh-----cCCCCCCEEEEEeCCccccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNK-----HGVSGYPTLKIFRNGQVSKAKK 125 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~ 125 (128)
+..|+++||++|+++++.|.+.. +.+..+|++++ +..... ++..++|++ ++++|+.+.+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~~-~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEED-EGAADRVVSVNNGNMTVPTV-KFADGSFLTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcCC-HhHHHHHHHHhCCCceeCEE-EECCCeEecCCC
Confidence 67899999999999999886642 44556787766 555444 388899997 466777655443
No 125
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.96 E-value=3e-09 Score=69.84 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=39.5
Q ss_pred cChhhHHHhhccCCcE-EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC
Q psy9104 38 LGDSDFEAVINQHETA-LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93 (128)
Q Consensus 38 ~~~~~~~~~~~~~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~ 93 (128)
.+++.+...--+++++ ++.+|++|||+|++..|.++++.+++.+.+ +.++.|++
T Consensus 28 ~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~ 82 (183)
T PTZ00256 28 IDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPC 82 (183)
T ss_pred CCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEec
Confidence 3444333323357765 456699999999999999999999987644 88888875
No 126
>KOG1672|consensus
Probab=98.94 E-value=2.5e-09 Score=69.45 Aligned_cols=88 Identities=23% Similarity=0.351 Sum_probs=79.1
Q ss_pred ceEEcC-hhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEE
Q psy9104 34 SVLDLG-DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112 (128)
Q Consensus 34 ~~~~~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~ 112 (128)
.+.++. +.+|-+...++..+++.||-+.-.-|+-+-..|+.+++.+-+ ..|+.||+.+. +.++.+++|+.+|++
T Consensus 67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~-PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKA-PFLVTKLNIKVLPTV 141 (211)
T ss_pred eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccC-ceeeeeeeeeEeeeE
Confidence 455555 677888888899999999999999999999999999998765 79999999999 999999999999999
Q ss_pred EEEeCCcccccccc
Q psy9104 113 KIFRNGQVSKAKKT 126 (128)
Q Consensus 113 ~~~~~g~~~~~~~g 126 (128)
++|.+|..+.++.|
T Consensus 142 ~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 142 ALFKNGKTVDYVVG 155 (211)
T ss_pred EEEEcCEEEEEEee
Confidence 99999999888876
No 127
>KOG3414|consensus
Probab=98.93 E-value=1.1e-08 Score=62.08 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=69.6
Q ss_pred ChhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEe
Q psy9104 39 GDSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 39 ~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~ 116 (128)
+.+..++++ +..+.+++.|..+|-|.|.++-..|.++++...+- ..++.+|+++- +++.+.|++...||+++|-
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV-~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV-PDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh-hhhhhhhcccCCceEEEEE
Confidence 456677777 77899999999999999999999999999998877 88999999999 9999999999999988876
Q ss_pred CCccc
Q psy9104 117 NGQVS 121 (128)
Q Consensus 117 ~g~~~ 121 (128)
+++.+
T Consensus 86 n~kHm 90 (142)
T KOG3414|consen 86 NNKHM 90 (142)
T ss_pred cCceE
Confidence 66543
No 128
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.92 E-value=4.9e-09 Score=65.53 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=58.3
Q ss_pred cCCcEEEEEE-cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---------------------chhhhhhcCC
Q psy9104 49 QHETALVMFY-APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---------------------GKETCNKHGV 106 (128)
Q Consensus 49 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~~~v 106 (128)
.+++++|.|| +.||+.|....+.+.++.+.+...+ +.++.|..+.. +..+.+.|++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 6899999999 7899999999999999999885433 66666665432 1456677777
Q ss_pred CCCC---------EEEEEe-CCccccccccc
Q psy9104 107 SGYP---------TLKIFR-NGQVSKAKKTE 127 (128)
Q Consensus 107 ~~~P---------t~~~~~-~g~~~~~~~g~ 127 (128)
...| ++++++ +|+++..+.|.
T Consensus 99 ~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred ccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 7665 666665 79888887765
No 129
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.92 E-value=5e-09 Score=66.22 Aligned_cols=75 Identities=12% Similarity=0.197 Sum_probs=55.7
Q ss_pred CcEEEEEE-cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------------------c--hhhhhhcCCC
Q psy9104 51 ETALVMFY-APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------------------G--KETCNKHGVS 107 (128)
Q Consensus 51 ~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------------------~--~~~~~~~~v~ 107 (128)
++++|.|| ++||+.|....+.+.++.+++.+.+ +.++.|+.+.. + ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence 78888887 8999999999999999999987544 77777765542 1 3466777876
Q ss_pred C----C--CEEEEEe-CCccccccccc
Q psy9104 108 G----Y--PTLKIFR-NGQVSKAKKTE 127 (128)
Q Consensus 108 ~----~--Pt~~~~~-~g~~~~~~~g~ 127 (128)
. . |+.++++ +|+++..+.|.
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred cccCCCccceEEEECCCCEEEEEEecC
Confidence 3 2 3666665 89887777664
No 130
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.91 E-value=6.1e-09 Score=65.51 Aligned_cols=74 Identities=11% Similarity=0.164 Sum_probs=55.8
Q ss_pred cCCcEEEEEEcCC-CHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---------------------c-hhhhhhcC
Q psy9104 49 QHETALVMFYAPW-CGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---------------------G-KETCNKHG 105 (128)
Q Consensus 49 ~~~~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---------------------~-~~~~~~~~ 105 (128)
++++++|.||+.| |++|+...+.+.++.+++. ++.++.|+.+.. . ..+.+.|+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g 100 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYG 100 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhC
Confidence 5789999999988 6999999999999998864 277777776522 1 34556777
Q ss_pred CCC------CCEEEEEe-CCcccccccc
Q psy9104 106 VSG------YPTLKIFR-NGQVSKAKKT 126 (128)
Q Consensus 106 v~~------~Pt~~~~~-~g~~~~~~~g 126 (128)
+.. .|+.++++ +|+++....|
T Consensus 101 v~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 101 VLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred CeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 753 57877776 8887776654
No 131
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.89 E-value=1.4e-08 Score=61.97 Aligned_cols=69 Identities=23% Similarity=0.453 Sum_probs=46.5
Q ss_pred ccCCcEEEEEEc-------CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------chhhhh--hcCCCCCCEE
Q psy9104 48 NQHETALVMFYA-------PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------GKETCN--KHGVSGYPTL 112 (128)
Q Consensus 48 ~~~~~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------~~~~~~--~~~v~~~Pt~ 112 (128)
.++++++|+|++ +|||+|...+|.+++.-...+.. ..++.+.+... +..+.+ .++++++||+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTL 93 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTL 93 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE---HHHHC-TTSHHHH--CC---SSSEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcCCHHHhCCCCCCceEcceeeeeecceE
Confidence 567899999985 49999999999999987775443 77777766432 134444 6899999999
Q ss_pred EEEeCCc
Q psy9104 113 KIFRNGQ 119 (128)
Q Consensus 113 ~~~~~g~ 119 (128)
+-+..++
T Consensus 94 i~~~~~~ 100 (119)
T PF06110_consen 94 IRWETGE 100 (119)
T ss_dssp EECTSS-
T ss_pred EEECCCC
Confidence 9997554
No 132
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.89 E-value=7.6e-09 Score=65.94 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=62.1
Q ss_pred EcChhhHHHhhccCCcEEEEEEcC-CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-------------------
Q psy9104 37 DLGDSDFEAVINQHETALVMFYAP-WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------------------- 96 (128)
Q Consensus 37 ~~~~~~~~~~~~~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------------------- 96 (128)
..+++.+...--++++++|.||+. ||+.|....+.+.++.+.+.+.+ +.++.|+.+..
T Consensus 17 ~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D 94 (154)
T PRK09437 17 DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDKPEKLSRFAEKELLNFTLLSD 94 (154)
T ss_pred CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCCCeEEEC
Confidence 344433332223678999999975 78999999999999988887544 77777766533
Q ss_pred -chhhhhhcCCCCC------------CEEEEEe-CCccccccccc
Q psy9104 97 -GKETCNKHGVSGY------------PTLKIFR-NGQVSKAKKTE 127 (128)
Q Consensus 97 -~~~~~~~~~v~~~------------Pt~~~~~-~g~~~~~~~g~ 127 (128)
+..+.+.|++... |+.++++ +|+++..+.|.
T Consensus 95 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~ 139 (154)
T PRK09437 95 EDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKF 139 (154)
T ss_pred CCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCC
Confidence 2456677887543 5656665 99988888764
No 133
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.89 E-value=5.4e-09 Score=65.51 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=37.8
Q ss_pred cCCcEEEEEEcCCCHH-HhhhcHHHHHHHHHhcCCC-CCeEEEEEeCC
Q psy9104 49 QHETALVMFYAPWCGH-CKKLKPEYEKAATDVKGAD-PPISFVKVDCT 94 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~-~~v~~~~vd~~ 94 (128)
++++++|.||++||++ |....+.+.++.+++...+ .++.++.|+.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6789999999999998 9999999999999887532 24777777654
No 134
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.88 E-value=7.8e-09 Score=67.22 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=55.9
Q ss_pred cCCcEEEEEE-cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---------------------------chhh
Q psy9104 49 QHETALVMFY-APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---------------------------GKET 100 (128)
Q Consensus 49 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~~~ 100 (128)
++++++|.|| +.||+.|....+.+.++++++.+.+ +.++.|+.+.. ...+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 5789999999 8999999999999999999987644 66666654432 1345
Q ss_pred hhhcCCC------CCCEEEEEe-CCcccccccc
Q psy9104 101 CNKHGVS------GYPTLKIFR-NGQVSKAKKT 126 (128)
Q Consensus 101 ~~~~~v~------~~Pt~~~~~-~g~~~~~~~g 126 (128)
.+.|++. ..|+.++++ +|++...+.+
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~ 138 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVN 138 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEec
Confidence 5567775 467877776 8877766643
No 135
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.88 E-value=9.2e-09 Score=57.12 Aligned_cols=56 Identities=25% Similarity=0.512 Sum_probs=43.1
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchh----hhhhcCCCCCCEEEEEeCCccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE----TCNKHGVSGYPTLKIFRNGQVS 121 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~ 121 (128)
+..|+++||++|+..++.+.+. ++.+..+|++++ +. +.+.+++.++|++++. |+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~-~~~~~~~~~~~~~~~vP~~~~~--~~~~ 61 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKD-SAAREEVLKVLGQRGVPVIVIG--HKII 61 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCC-HHHHHHHHHHhCCCcccEEEEC--CEEE
Confidence 5689999999999998877651 167788888776 33 4567899999999884 6543
No 136
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.87 E-value=9.3e-09 Score=66.57 Aligned_cols=73 Identities=10% Similarity=0.184 Sum_probs=55.2
Q ss_pred cCCcEEEEEEcCC-CHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc----------------------chhhhhhcC
Q psy9104 49 QHETALVMFYAPW-CGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA----------------------GKETCNKHG 105 (128)
Q Consensus 49 ~~~~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~----------------------~~~~~~~~~ 105 (128)
++++++|.||+.| |+.|....+.+.++.+++. ++.++.|+.+.. +..+++.|+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g 118 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG 118 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence 5789999999999 9999999999999988873 277777776532 125677888
Q ss_pred CCCCC---------EEEEEe-CCccccccc
Q psy9104 106 VSGYP---------TLKIFR-NGQVSKAKK 125 (128)
Q Consensus 106 v~~~P---------t~~~~~-~g~~~~~~~ 125 (128)
+...| +.++++ +|++...+.
T Consensus 119 v~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 119 VAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred CeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 87666 766665 887765553
No 137
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.86 E-value=1e-08 Score=67.51 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=55.2
Q ss_pred cCCcEEEEEE-cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------------------------chhhhhh
Q psy9104 49 QHETALVMFY-APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------------------------GKETCNK 103 (128)
Q Consensus 49 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~~~ 103 (128)
++++++|.|| ++||+.|....+.+.+..+++.+.+ +.++.|+.+.. +..+++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 5789999999 9999999999999999999887554 55555554421 1456678
Q ss_pred cCCC------CCCEEEEEe-CCcccccc
Q psy9104 104 HGVS------GYPTLKIFR-NGQVSKAK 124 (128)
Q Consensus 104 ~~v~------~~Pt~~~~~-~g~~~~~~ 124 (128)
|++. ..|+.++++ +|++...+
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 8875 358777775 88876554
No 138
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.82 E-value=1.7e-08 Score=58.23 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=49.6
Q ss_pred EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcC--CCCCCEEEEEeCCcccccc
Q psy9104 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHG--VSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 53 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~ 124 (128)
.++.|+.+|||+|++.++.|+++..+..+ +.+..+|++++ ..++.+..+ .+.+|++++ +|+.+..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~----i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~igg~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD----FDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIGGC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC----CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEcCH
Confidence 47889999999999999999999876432 77888888764 134555454 478999876 78766554
No 139
>KOG3425|consensus
Probab=98.82 E-value=3.8e-08 Score=59.26 Aligned_cols=73 Identities=23% Similarity=0.509 Sum_probs=56.5
Q ss_pred hhHHHhh---ccCCcEEEEEEc--------CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------chhhhhh
Q psy9104 41 SDFEAVI---NQHETALVMFYA--------PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------GKETCNK 103 (128)
Q Consensus 41 ~~~~~~~---~~~~~~lv~f~~--------~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------~~~~~~~ 103 (128)
++|++.+ ..++.++++|++ +|||+|.+.+|.+.+.-+..+.. +.|+.+++.+. +.++.+.
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEecCCCcccCCCCccccC
Confidence 5566665 456668999985 59999999999999988865544 88999987643 2466666
Q ss_pred cCC-CCCCEEEEEe
Q psy9104 104 HGV-SGYPTLKIFR 116 (128)
Q Consensus 104 ~~v-~~~Pt~~~~~ 116 (128)
.++ +.+||++=+.
T Consensus 90 ~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 90 PGILTAVPTLLRWK 103 (128)
T ss_pred CCceeecceeeEEc
Confidence 777 9999999886
No 140
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.76 E-value=2.7e-08 Score=59.47 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=72.1
Q ss_pred CCceEEcChhhHHHhhccCCcEEEEEEcC--CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCC
Q psy9104 32 ESSVLDLGDSDFEAVINQHETALVMFYAP--WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGY 109 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~lv~f~~~--~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~ 109 (128)
..++..++.++++..+..++..+++|.++ -++.+....-.+.++.+.+.+. +....++...+ ..+..+|++..+
T Consensus 8 ~~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~---~~~avv~~~~e-~~L~~r~gv~~~ 83 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGR---FRGAVVARAAE-RALAARFGVRRW 83 (107)
T ss_dssp T-TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTS---EEEEEEEHHHH-HHHHHHHT-TSS
T ss_pred hcCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCc---cceEEECchhH-HHHHHHhCCccC
Confidence 45788889999999998888888877765 3567777777899999998876 77777886666 899999999999
Q ss_pred CEEEEEeCCcccccccc
Q psy9104 110 PTLKIFRNGQVSKAKKT 126 (128)
Q Consensus 110 Pt~~~~~~g~~~~~~~g 126 (128)
|+++++++|+.+....|
T Consensus 84 PaLvf~R~g~~lG~i~g 100 (107)
T PF07449_consen 84 PALVFFRDGRYLGAIEG 100 (107)
T ss_dssp SEEEEEETTEEEEEEES
T ss_pred CeEEEEECCEEEEEecC
Confidence 99999999998776554
No 141
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.73 E-value=2.6e-07 Score=56.72 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=64.8
Q ss_pred ChhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCE-EEEE
Q psy9104 39 GDSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPT-LKIF 115 (128)
Q Consensus 39 ~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt-~~~~ 115 (128)
+++..++++ +.++.+++.|..+|-|.|.++-+.|.+.++..++- ..++.+|.++- +++.+.|.+. .|. +++|
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V-pdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV-PDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT-HCCHHHTTS--SSEEEEEE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc-hhhhcccccC-CCeEEEEE
Confidence 456788887 78899999999999999999999999999998876 89999999999 9999999999 785 5666
Q ss_pred eCCccc
Q psy9104 116 RNGQVS 121 (128)
Q Consensus 116 ~~g~~~ 121 (128)
-+|+.+
T Consensus 82 ~rnkhm 87 (133)
T PF02966_consen 82 FRNKHM 87 (133)
T ss_dssp ETTEEE
T ss_pred ecCeEE
Confidence 456543
No 142
>PRK15000 peroxidase; Provisional
Probab=98.70 E-value=6.1e-08 Score=64.53 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=56.9
Q ss_pred cCCcEEEEEEc-CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---------------------------chhh
Q psy9104 49 QHETALVMFYA-PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---------------------------GKET 100 (128)
Q Consensus 49 ~~~~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~~~ 100 (128)
++++++|.||. +||+.|....+.|.+..+++...+ +.++.++.+.. +..+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 57899999999 599999999999999999998655 66666665522 1345
Q ss_pred hhhcCCC------CCCEEEEEe-CCcccccccc
Q psy9104 101 CNKHGVS------GYPTLKIFR-NGQVSKAKKT 126 (128)
Q Consensus 101 ~~~~~v~------~~Pt~~~~~-~g~~~~~~~g 126 (128)
++.|++. ..|+.++++ +|++...+.|
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~ 143 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVN 143 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEec
Confidence 5667776 578877776 8877665554
No 143
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.70 E-value=1e-07 Score=64.09 Aligned_cols=65 Identities=22% Similarity=0.364 Sum_probs=53.0
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc----------cchhhhhhcCCCCCCEEEEEe-C
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE----------AGKETCNKHGVSGYPTLKIFR-N 117 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~----------~~~~~~~~~~v~~~Pt~~~~~-~ 117 (128)
.++.-|++||.+.|+.|+.+.|.+..+++++. +.+..|+.|. .+.++++++++..+|++++.+ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 36778999999999999999999999999985 4455555541 137889999999999998887 4
Q ss_pred C
Q psy9104 118 G 118 (128)
Q Consensus 118 g 118 (128)
+
T Consensus 194 ~ 194 (215)
T PF13728_consen 194 T 194 (215)
T ss_pred C
Confidence 4
No 144
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.70 E-value=1.3e-07 Score=66.62 Aligned_cols=94 Identities=21% Similarity=0.348 Sum_probs=63.7
Q ss_pred CCCceEEcChhhHHHhhccCCcEEEEEEcCCC--HHHhh---hcH-HHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhc
Q psy9104 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWC--GHCKK---LKP-EYEKAATDVKGADPPISFVKVDCTEAGKETCNKH 104 (128)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~~C--~~C~~---~~~-~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~ 104 (128)
+...+++++..+|.+++++....+|+|+.+-- ...++ +.. .|+-.+..... ..+.|..||..++ ..+++++
T Consensus 32 GkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~--~gigfg~VD~~Kd-~klAKKL 108 (383)
T PF01216_consen 32 GKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED--KGIGFGMVDSKKD-AKLAKKL 108 (383)
T ss_dssp SS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG--CTEEEEEEETTTT-HHHHHHH
T ss_pred CccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc--cCcceEEeccHHH-HHHHHhc
Confidence 45678999999999999999999999998753 22211 223 33334444443 3499999999999 9999999
Q ss_pred CCCCCCEEEEEeCCcccccccccC
Q psy9104 105 GVSGYPTLKIFRNGQVSKAKKTEL 128 (128)
Q Consensus 105 ~v~~~Pt~~~~~~g~~~~~~~g~~ 128 (128)
|+...+++.+|++|+++ .|.|+.
T Consensus 109 gv~E~~SiyVfkd~~~I-EydG~~ 131 (383)
T PF01216_consen 109 GVEEEGSIYVFKDGEVI-EYDGER 131 (383)
T ss_dssp T--STTEEEEEETTEEE-EE-S--
T ss_pred CccccCcEEEEECCcEE-EecCcc
Confidence 99999999999999754 577863
No 145
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.68 E-value=1.1e-07 Score=62.59 Aligned_cols=74 Identities=9% Similarity=0.160 Sum_probs=55.3
Q ss_pred cCCcEEEEEE-cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------------------------chhhhhh
Q psy9104 49 QHETALVMFY-APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------------------------GKETCNK 103 (128)
Q Consensus 49 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~~~~~~ 103 (128)
++++++|.|| ++||+.|....+.+.+..+++...+ +.++.|+.+.. +..+++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 5779999999 9999999999999999999987544 55666654432 2466788
Q ss_pred cCC----CCC--CEEEEEe-CCcccccc
Q psy9104 104 HGV----SGY--PTLKIFR-NGQVSKAK 124 (128)
Q Consensus 104 ~~v----~~~--Pt~~~~~-~g~~~~~~ 124 (128)
|++ .+. |+.++++ +|++...+
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~ 135 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIE 135 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEE
Confidence 887 345 8877776 88765443
No 146
>KOG2603|consensus
Probab=98.68 E-value=2e-07 Score=64.83 Aligned_cols=85 Identities=25% Similarity=0.464 Sum_probs=74.8
Q ss_pred CCCceEEcChhhHHHhh---ccCCcEEEEEEcC----CCHHHhhhcHHHHHHHHHhcCCCC-----CeEEEEEeCCccch
Q psy9104 31 DESSVLDLGDSDFEAVI---NQHETALVMFYAP----WCGHCKKLKPEYEKAATDVKGADP-----PISFVKVDCTEAGK 98 (128)
Q Consensus 31 ~~~~~~~~~~~~~~~~~---~~~~~~lv~f~~~----~C~~C~~~~~~l~~~~~~~~~~~~-----~v~~~~vd~~~~~~ 98 (128)
...+++.++++.|...+ .++...+++|+|. .|+-|+...+++.-+++.+...++ ++.|..||.++. +
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-p 116 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-P 116 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-H
Confidence 45678999999999888 6778889999975 799999999999999998875542 688999999999 9
Q ss_pred hhhhhcCCCCCCEEEEEe
Q psy9104 99 ETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 99 ~~~~~~~v~~~Pt~~~~~ 116 (128)
...+.++++.+|++++|.
T Consensus 117 ~~Fq~l~ln~~P~l~~f~ 134 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFS 134 (331)
T ss_pred HHHHHhcccCCCeEEEeC
Confidence 999999999999999995
No 147
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.64 E-value=1.8e-07 Score=50.29 Aligned_cols=56 Identities=30% Similarity=0.519 Sum_probs=40.8
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
++.|+.++||+|++.+..|++.. +.+..+|++++ ...+.+..+...+|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~---------i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG---------IPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT---------BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC---------CeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 57899999999999988884422 66777777765 123334449999999998 6653
No 148
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.62 E-value=2.8e-07 Score=52.01 Aligned_cols=56 Identities=32% Similarity=0.532 Sum_probs=42.8
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
.+++++|+.|..+...+++..++.. +..-.+|..+. +.+ .+|++.++|++++ ||+.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~~~-~~~-~~ygv~~vPalvI--ng~~ 59 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIEDF-EEI-EKYGVMSVPALVI--NGKV 59 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETTTH-HHH-HHTT-SSSSEEEE--TTEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEccCH-HHH-HHcCCCCCCEEEE--CCEE
Confidence 3367889999999999988888863 55566677555 666 9999999999987 6763
No 149
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.61 E-value=1.3e-07 Score=54.64 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=45.5
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCC--CCCCEEEEEeCCcccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGV--SGYPTLKIFRNGQVSK 122 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v--~~~Pt~~~~~~g~~~~ 122 (128)
++.|+.+|||+|.+.+..|+++..+..+ +.+..+|++.+ ..++....+- ..+|++++ +|+.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~----i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~ig 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD----FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVG 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC----CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEec
Confidence 6789999999999999999887655332 66777777643 1346566663 78999976 666544
No 150
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.60 E-value=1.5e-07 Score=53.58 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=45.3
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc----hhhhhhcCCCCCCEEEEEeCCcccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG----KETCNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
++.|+++|||+|+.+++.|.+.... +.++.+|.+++. ..+.+.++..++|++++ +|+.+..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~ 67 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGC 67 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCH
Confidence 5789999999999999999886552 567777776541 23556678889999754 67765543
No 151
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.55 E-value=7e-07 Score=54.49 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=54.7
Q ss_pred ccCCcEEEEEEcC----CCHHHhhh--cHHHHHHHHHhcCCCCCeEEEEEeCCcc-chhhhhhcCCCCCCEEEEEe--CC
Q psy9104 48 NQHETALVMFYAP----WCGHCKKL--KPEYEKAATDVKGADPPISFVKVDCTEA-GKETCNKHGVSGYPTLKIFR--NG 118 (128)
Q Consensus 48 ~~~~~~lv~f~~~----~C~~C~~~--~~~l~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~v~~~Pt~~~~~--~g 118 (128)
++.|.++|++|++ ||..|+.. .+.+.+..+ + ++.+...|+.+. +..++..++++++|+++++. ++
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~ 88 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T---RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN 88 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c---CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC
Confidence 7889999999999 88999766 344444442 2 388999999754 35678999999999998873 33
Q ss_pred --ccccccccc
Q psy9104 119 --QVSKAKKTE 127 (128)
Q Consensus 119 --~~~~~~~g~ 127 (128)
+.+.+..|.
T Consensus 89 ~~~vv~~i~G~ 99 (116)
T cd02991 89 RMTIVGRLEGL 99 (116)
T ss_pred ceEEEEEEeCC
Confidence 346666664
No 152
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.55 E-value=7.2e-07 Score=67.73 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=61.3
Q ss_pred EcChhhHHHhhccCCcE-EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEE
Q psy9104 37 DLGDSDFEAVINQHETA-LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115 (128)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~ 115 (128)
.++++..++..+-++++ +-.|.+++||+|......+++++.+.+ ++..-.+|..+. ++++++|++.++|++++
T Consensus 462 ~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~~-~~~~~~~~v~~vP~~~i- 535 (555)
T TIGR03143 462 PLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSHF-PDLKDEYGIMSVPAIVV- 535 (555)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECccc-HHHHHhCCceecCEEEE-
Confidence 55666666555556676 445689999999988888888887744 488999999999 99999999999999998
Q ss_pred eCCc
Q psy9104 116 RNGQ 119 (128)
Q Consensus 116 ~~g~ 119 (128)
||+
T Consensus 536 -~~~ 538 (555)
T TIGR03143 536 -DDQ 538 (555)
T ss_pred -CCE
Confidence 554
No 153
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.54 E-value=3e-07 Score=61.31 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=51.0
Q ss_pred cCCcEEE-EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------------------------chhhh
Q psy9104 49 QHETALV-MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------------------------GKETC 101 (128)
Q Consensus 49 ~~~~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------------------------~~~~~ 101 (128)
+++.++| .|+++||+.|....+.|.+..+++...+ +.++.++.+.. +..++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 4666665 5899999999999999999999987654 55566655421 24566
Q ss_pred hhcCCC------CCCEEEEEe-CCccc
Q psy9104 102 NKHGVS------GYPTLKIFR-NGQVS 121 (128)
Q Consensus 102 ~~~~v~------~~Pt~~~~~-~g~~~ 121 (128)
+.|++. .+|+.++++ +|++.
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~ 130 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVR 130 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEE
Confidence 677774 478887776 77654
No 154
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.54 E-value=1.5e-06 Score=58.20 Aligned_cols=40 Identities=18% Similarity=0.508 Sum_probs=30.6
Q ss_pred CCcEEEEEEcCCCHHHhhhcHHH---HHHHHHhcCCCCCeEEEEEe
Q psy9104 50 HETALVMFYAPWCGHCKKLKPEY---EKAATDVKGADPPISFVKVD 92 (128)
Q Consensus 50 ~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~~~~vd 92 (128)
+++.+++|++..||+|.++.+.+ +.+.+.+++. +.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEec
Confidence 57889999999999999999876 6777776644 4444433
No 155
>PHA03050 glutaredoxin; Provisional
Probab=98.53 E-value=4.4e-07 Score=54.67 Aligned_cols=74 Identities=9% Similarity=0.098 Sum_probs=47.1
Q ss_pred HHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc----hhhhhhcCCCCCCEEEEEeCC
Q psy9104 43 FEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG----KETCNKHGVSGYPTLKIFRNG 118 (128)
Q Consensus 43 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~~v~~~Pt~~~~~~g 118 (128)
.++.+++++ ++.|..+|||+|++.+..|.+..-+.. .+..+.+|....+ ..+.+..+-+.+|++++ +|
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g 77 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GK 77 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CC
Confidence 344444443 788999999999999998877643221 1444444431121 34555567889999977 67
Q ss_pred cccccc
Q psy9104 119 QVSKAK 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
+.+..|
T Consensus 78 ~~iGG~ 83 (108)
T PHA03050 78 TSIGGY 83 (108)
T ss_pred EEEeCh
Confidence 766554
No 156
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.49 E-value=1.3e-06 Score=65.75 Aligned_cols=73 Identities=14% Similarity=0.228 Sum_probs=58.9
Q ss_pred EcChhhHHHhhccCCcE-EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 37 DLGDSDFEAVINQHETA-LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
.++++..+...+-++|+ +-.|.+++||+|......+++++... +++..-.+|..+. ++++++|++.++|++++
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~id~~~~-~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMIDGALF-QDEVEARNIMAVPTVFL 175 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEEEchhC-HhHHHhcCCcccCEEEE
Confidence 44555555544444554 88899999999998888888888763 3489999999999 99999999999999987
No 157
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.46 E-value=3.3e-07 Score=52.12 Aligned_cols=65 Identities=20% Similarity=0.413 Sum_probs=45.1
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--chhhhhhcCCCCCCEEEEEeCCcccccc
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--GKETCNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
+++.-++.|+.+||++|++.+..|.+. + +.+..+|++++ ...+.+..+...+|.+++ +|+.+..+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~-------g--i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~igG~ 71 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK-------G--YDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLIGGS 71 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc-------C--CCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEEcCH
Confidence 345668899999999999999988642 1 44555666543 234455568899999976 67655443
No 158
>KOG0911|consensus
Probab=98.46 E-value=1e-07 Score=63.37 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=68.3
Q ss_pred hccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcccccccc
Q psy9104 47 INQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKT 126 (128)
Q Consensus 47 ~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 126 (128)
..+.+..++.||+.||..|.++...+..+++...+ +.+++.+.++. ++++..+.+...|.+.++..|+.+.+..|
T Consensus 14 ~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~----~~~~k~~a~~~-~eis~~~~v~~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 14 DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN----AQFLKLEAEEF-PEISNLIAVEAVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh----heeeeehhhhh-hHHHHHHHHhcCceeeeeecchhhhhhhc
Confidence 35889999999999999999999999999888733 89999999999 99999999999999999999988887766
Q ss_pred c
Q psy9104 127 E 127 (128)
Q Consensus 127 ~ 127 (128)
.
T Consensus 89 ~ 89 (227)
T KOG0911|consen 89 A 89 (227)
T ss_pred c
Confidence 4
No 159
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.45 E-value=2.2e-06 Score=51.12 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=59.2
Q ss_pred ChhhHHHhhc--cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCC-CCEE
Q psy9104 39 GDSDFEAVIN--QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSG-YPTL 112 (128)
Q Consensus 39 ~~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~-~Pt~ 112 (128)
+.+++++.++ .++|++|+=+++.||-+......+++.....++. +.++.+|+-+. ...++.+|||+. -|.+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 3567888774 4899999999999999999999999999887764 88888998877 245677899986 6999
Q ss_pred EEEeCCcccc
Q psy9104 113 KIFRNGQVSK 122 (128)
Q Consensus 113 ~~~~~g~~~~ 122 (128)
++++||+.+.
T Consensus 83 ili~~g~~v~ 92 (105)
T PF11009_consen 83 ILIKNGKVVW 92 (105)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 9999998764
No 160
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.44 E-value=1.3e-06 Score=48.22 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=38.6
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhh----cCCCCCCEEEEEeCCccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNK----HGVSGYPTLKIFRNGQVS 121 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~----~~v~~~Pt~~~~~~g~~~ 121 (128)
++.|+++||++|.+.+..+.+. + +.+..+|++.+ ....+. .+...+|++++ +|+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------~--i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~i~~--~~~~i 61 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------G--IPFEEVDVDED-PEALEELKKLNGYRSVPVVVI--GDEHL 61 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------C--CCeEEEeCCCC-HHHHHHHHHHcCCcccCEEEE--CCEEE
Confidence 5789999999999988777652 1 55566677655 433333 36789999976 45443
No 161
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.44 E-value=1.1e-06 Score=60.76 Aligned_cols=74 Identities=12% Similarity=0.249 Sum_probs=54.2
Q ss_pred cCCcEEEEEE-cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---------------------------chhh
Q psy9104 49 QHETALVMFY-APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---------------------------GKET 100 (128)
Q Consensus 49 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~~~ 100 (128)
++++++++|| ++||+.|....+.+.+..+++...+ +.++.|+.+.. +..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 5678888888 8999999999999999999987655 44555554421 2456
Q ss_pred hhhcCCC-----CCCEEEEEe-CCcccccc
Q psy9104 101 CNKHGVS-----GYPTLKIFR-NGQVSKAK 124 (128)
Q Consensus 101 ~~~~~v~-----~~Pt~~~~~-~g~~~~~~ 124 (128)
++.|++. ..|+.++++ +|++...+
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 7788875 478877776 88765543
No 162
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.42 E-value=9.9e-07 Score=59.38 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=52.8
Q ss_pred cCCcE-EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------------------------chhhh
Q psy9104 49 QHETA-LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------------------------GKETC 101 (128)
Q Consensus 49 ~~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------------------------~~~~~ 101 (128)
.++++ |+.|+++|||.|....+.+.++.+++...+ +.++.++.+.. +..++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 35564 678899999999999999999999997655 66666665532 13556
Q ss_pred hhcCCC-------CCCEEEEEe-CCccccc
Q psy9104 102 NKHGVS-------GYPTLKIFR-NGQVSKA 123 (128)
Q Consensus 102 ~~~~v~-------~~Pt~~~~~-~g~~~~~ 123 (128)
+.|++. ..|+.++++ +|++...
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 677763 578877776 7776443
No 163
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.40 E-value=8.5e-07 Score=52.62 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=39.3
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhh----hhhcCCCCCCEEEEEeCCcccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET----CNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
++.|..+|||+|++.+..|.+... .+..+.+|.+....++ .+..+.+.+|.+++ +|+.+..|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i-------~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ 75 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGV-------NPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGL 75 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCC-------CCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCH
Confidence 778999999999999888766421 1344444433221222 33346778999865 77766555
No 164
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.39 E-value=1.3e-06 Score=58.89 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=35.1
Q ss_pred cCCcEEE-EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 49 QHETALV-MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 49 ~~~~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
++++++| .|+++||+.|....+.|.+..+++...+ +.++.++.+
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~D 76 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVD 76 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECC
Confidence 4566665 7889999999999999999999997655 566666655
No 165
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.39 E-value=1.5e-06 Score=58.02 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=51.2
Q ss_pred CcE-EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------------------------chhhhhh
Q psy9104 51 ETA-LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------------------------GKETCNK 103 (128)
Q Consensus 51 ~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------------------------~~~~~~~ 103 (128)
+++ ++.|+++|||.|....+.+.++.+++...+ +.++.|+.+.. +..+++.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 444 557889999999999999999999998655 66666665531 1456777
Q ss_pred cCCC----CC----CEEEEEe-CCcccccccc
Q psy9104 104 HGVS----GY----PTLKIFR-NGQVSKAKKT 126 (128)
Q Consensus 104 ~~v~----~~----Pt~~~~~-~g~~~~~~~g 126 (128)
|++. +. |+.++++ +|++...+.+
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~ 135 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDPDKKIRLILYY 135 (203)
T ss_pred cCCccccCCCCceeeEEEEECCCCeEEEEEec
Confidence 8875 23 3455554 8876554433
No 166
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.39 E-value=7.8e-07 Score=50.39 Aligned_cols=59 Identities=14% Similarity=0.349 Sum_probs=40.4
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhh----hhhcCCCCCCEEEEEeCCcccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET----CNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
+..|+.++||+|.+.+..|++.. +.+..+|++++ +.. .+..+...+|++++ +|+.+..+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~---------i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i--~g~~igg~ 63 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG---------VTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFI--GDVHVGGC 63 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC---------CCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEcCh
Confidence 46789999999999999887532 44555566555 333 34457788999866 67655443
No 167
>KOG3170|consensus
Probab=98.38 E-value=2.5e-06 Score=56.02 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=76.1
Q ss_pred CCceEEcChhhHHHhh---ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCC
Q psy9104 32 ESSVLDLGDSDFEAVI---NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~ 108 (128)
-..+.++++..|-+.+ +++-.|+|..|...-|.|.-+...++.++..++. +.|+++-.... ...|.-..
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c----IpNYPe~n 161 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC----IPNYPESN 161 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc----cCCCcccC
Confidence 3468899999988887 6678889999999999999999999999999986 88999887555 67788889
Q ss_pred CCEEEEEeCCccccccccc
Q psy9104 109 YPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 109 ~Pt~~~~~~g~~~~~~~g~ 127 (128)
.||+++|..|...+.+.|.
T Consensus 162 lPTl~VY~~G~lk~q~igl 180 (240)
T KOG3170|consen 162 LPTLLVYHHGALKKQMIGL 180 (240)
T ss_pred CCeEEEeecchHHhheehh
Confidence 9999999999988888774
No 168
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.37 E-value=3.7e-06 Score=63.38 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=59.3
Q ss_pred EEcChhhHHHhhccCCc-EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 36 LDLGDSDFEAVINQHET-ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 36 ~~~~~~~~~~~~~~~~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
..++++..+...+-+++ .+-.|.++.||+|......+++++...+ ++..-.+|..+. +++.++|++.++|++++
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~id~~~~-~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMIDGALF-QDEVEALGIQGVPAVFL 176 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEEEchhC-HHHHHhcCCcccCEEEE
Confidence 45556655555544445 4888999999999888888888777744 488888999999 99999999999999987
No 169
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.37 E-value=1.6e-06 Score=59.02 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=49.5
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC---cc-----------------------------
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT---EA----------------------------- 96 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~---~~----------------------------- 96 (128)
.++..++.|+.+.||+|+++.+.+.++.+. +..+.+...+.. ..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 467789999999999999999998887542 111333323321 00
Q ss_pred ---------chhhhhhcCCCCCCEEEEEeCCcccccc
Q psy9104 97 ---------GKETCNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 97 ---------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
+..++++++++++||++ +.||+.+..+
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~~G~ 217 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLVPGY 217 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCCeEeeCC
Confidence 36788899999999999 5678765433
No 170
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.37 E-value=1.5e-06 Score=48.57 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=41.0
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhh----hhcCCC-CCCEEEEEeCCcccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC----NKHGVS-GYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~----~~~~v~-~~Pt~~~~~~g~~~~~~ 124 (128)
+..|+.++||+|.+.+..|++. + +.+..+|++++ ++.. +..+.. .+|++++ +|+.+..+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------~--i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i--~g~~igg~ 65 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------G--VDYEEIDVDGD-PALREEMINRSGGRRTVPQIFI--GDVHIGGC 65 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------C--CcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEE--CCEEEeCh
Confidence 5689999999999998888762 1 55666677665 3333 345666 8998876 67665544
No 171
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.37 E-value=1.7e-06 Score=47.51 Aligned_cols=59 Identities=29% Similarity=0.408 Sum_probs=41.7
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhh----hhhcCCCCCCEEEEEeCCcccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET----CNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
++.|+++|||+|+..+..|.+.. +.+..+|++++ .+. .+..+...+|++++ +|+.+..+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~~--~~~~igg~ 64 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILED-GELREELKELSGWPTVPQIFI--NGEFIGGY 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEecH
Confidence 56899999999999988887654 45666777766 333 33456678888755 77766554
No 172
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.36 E-value=1.8e-06 Score=57.38 Aligned_cols=74 Identities=14% Similarity=0.253 Sum_probs=52.9
Q ss_pred cCCcEEEEEEc-CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---------------------------chhh
Q psy9104 49 QHETALVMFYA-PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---------------------------GKET 100 (128)
Q Consensus 49 ~~~~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~~~ 100 (128)
++++++|+||. +||+.|......+.++.+++...+ +.++.|+.+.. +..+
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 57899999994 889999988899999999998655 66666665522 1345
Q ss_pred hhhcCCC------CCCEEEEEe-CCcccccc
Q psy9104 101 CNKHGVS------GYPTLKIFR-NGQVSKAK 124 (128)
Q Consensus 101 ~~~~~v~------~~Pt~~~~~-~g~~~~~~ 124 (128)
++.|++. .+|+.++++ +|++....
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDPKGMLRQIT 143 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECCCCEEEEEE
Confidence 6777774 357777766 77654433
No 173
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.35 E-value=1.7e-06 Score=57.33 Aligned_cols=69 Identities=22% Similarity=0.387 Sum_probs=48.1
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc--c------------------------------
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE--A------------------------------ 96 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~--~------------------------------ 96 (128)
.++..++.|+.+.||+|+++.+.+.+. .+ +.++.+..+.... +
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 368899999999999999999988761 11 1223333333221 1
Q ss_pred ----------chhhhhhcCCCCCCEEEEEeCCccccc
Q psy9104 97 ----------GKETCNKHGVSGYPTLKIFRNGQVSKA 123 (128)
Q Consensus 97 ----------~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 123 (128)
+..++++++++++|+++ +++|+.+..
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~~G 186 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-LADGRVVPG 186 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-ECCCeEecC
Confidence 25778889999999997 777876543
No 174
>PRK13189 peroxiredoxin; Provisional
Probab=98.35 E-value=2e-06 Score=58.23 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=49.5
Q ss_pred cCCcEE-EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------------------------chhhh
Q psy9104 49 QHETAL-VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------------------------GKETC 101 (128)
Q Consensus 49 ~~~~~l-v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------------------------~~~~~ 101 (128)
+++.++ +.|+++||+.|....+.|.+.++++...+ +.++.++.+.. +..++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 466555 56789999999999999999999987655 55555554422 13456
Q ss_pred hhcCCC-------CCCEEEEEe-CCccc
Q psy9104 102 NKHGVS-------GYPTLKIFR-NGQVS 121 (128)
Q Consensus 102 ~~~~v~-------~~Pt~~~~~-~g~~~ 121 (128)
+.|++. .+|+.++++ +|++.
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir 139 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDPKGIIR 139 (222)
T ss_pred HHhCCCccccCCCceeEEEEECCCCeEE
Confidence 677764 457777776 77653
No 175
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.35 E-value=2.3e-06 Score=58.87 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=51.0
Q ss_pred CCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------chhhhhhcCCCCCCEEEEEe
Q psy9104 50 HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------GKETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 50 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------~~~~~~~~~v~~~Pt~~~~~ 116 (128)
++.-+++||...|++|+++.|.+..+++.+.-. +..+.+|.... +...+++++++.+|++++.+
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~---v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~ 221 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGIS---VIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVN 221 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCe---EEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEE
Confidence 558899999999999999999999999998632 44444444311 25678899999999998886
No 176
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.34 E-value=1.8e-06 Score=48.17 Aligned_cols=60 Identities=13% Similarity=0.278 Sum_probs=43.1
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc---hhhhhhcCCCCCCEEEEEeCCcccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG---KETCNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
++.|+.++||+|++.+..|++.. +.+..+|++++. +++.+..+-..+|++++ +|+.+..+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~g---------i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iGg~ 65 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKG---------LPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVGGL 65 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCC---------CceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEeCH
Confidence 57899999999999988887621 556667877661 23555567788899977 67665544
No 177
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.32 E-value=4.7e-06 Score=52.52 Aligned_cols=31 Identities=39% Similarity=0.697 Sum_probs=27.1
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHh
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDV 79 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~ 79 (128)
.++..+++|+.++||+|+++.+.+.++....
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4678899999999999999999999877664
No 178
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.30 E-value=3.2e-06 Score=57.91 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc--------chhhhhhcCCCCCCEEEEEe
Q psy9104 50 HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA--------GKETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 50 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~--------~~~~~~~~~v~~~Pt~~~~~ 116 (128)
+..-|++||...|++|+++.|.+..+++.+.-. +.-+.+|.... +...+++++++.+|++++.+
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~---v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~ 214 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLS---VIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVD 214 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCe---EEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEE
Confidence 558899999999999999999999999998633 44555554222 24566789999999998887
No 179
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.30 E-value=1.3e-05 Score=52.07 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=70.2
Q ss_pred CCceEEcChhhHHHhhccCCc-EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCC--C
Q psy9104 32 ESSVLDLGDSDFEAVINQHET-ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS--G 108 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~--~ 108 (128)
-..+.+++++++......+.+ +++.|..........+...+.++++++.+. +.|+.+|++.. +.+.+.++++ .
T Consensus 76 ~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~-~~~~~~~~i~~~~ 151 (184)
T PF13848_consen 76 FPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDF-PRLLKYFGIDEDD 151 (184)
T ss_dssp STSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTT-HHHHHHTTTTTSS
T ss_pred cccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHh-HHHHHHcCCCCcc
Confidence 445789999999999887766 777787777888899999999999998876 99999999987 8899999998 8
Q ss_pred CCEEEEEe
Q psy9104 109 YPTLKIFR 116 (128)
Q Consensus 109 ~Pt~~~~~ 116 (128)
+|++++++
T Consensus 152 ~P~~vi~~ 159 (184)
T PF13848_consen 152 LPALVIFD 159 (184)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999987
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.29 E-value=2.5e-06 Score=47.52 Aligned_cols=51 Identities=22% Similarity=0.411 Sum_probs=38.1
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhc---CCCCCCEEEE
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKH---GVSGYPTLKI 114 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~---~v~~~Pt~~~ 114 (128)
+..|+.++||+|++.+..|.+. + +.+..+|++++ +.....+ +...+|++++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-------~--i~~~~~di~~~-~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-------G--IAFEEINIDEQ-PEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-------C--CceEEEECCCC-HHHHHHHHHcCCcccCEEEE
Confidence 3578899999999999888752 1 66777788776 5454444 7788999866
No 181
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.28 E-value=1.9e-06 Score=48.00 Aligned_cols=58 Identities=19% Similarity=0.386 Sum_probs=40.5
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc--hhhhhhcCCCCCCEEEEEeCCcccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG--KETCNKHGVSGYPTLKIFRNGQVSK 122 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~v~~~Pt~~~~~~g~~~~ 122 (128)
++.|..+|||+|.+.+..|.+. + +.+..+|++++. ..+.+..+...+|.+++ +|+.+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~--i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~ig 62 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------G--ISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEEe
Confidence 6789999999999998888752 1 555666666551 22334458889999865 676544
No 182
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.25 E-value=2e-06 Score=56.46 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=42.3
Q ss_pred EEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 36 LDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
..++++.+....-+++++||.|||+||+.|.+ .+.|+++.+.+.+.+ +.++.++++
T Consensus 11 ~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~g--l~Vlg~p~n 66 (183)
T PRK10606 11 TTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQG--FVVLGFPCN 66 (183)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCC--eEEEEeecc
Confidence 34444444333346899999999999999975 789999999987644 888888774
No 183
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.24 E-value=6.6e-06 Score=48.63 Aligned_cols=69 Identities=16% Similarity=0.285 Sum_probs=43.8
Q ss_pred HHHhhccCCcEEEEEE----cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhh----hhhcCCCCCCEEEE
Q psy9104 43 FEAVINQHETALVMFY----APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET----CNKHGVSGYPTLKI 114 (128)
Q Consensus 43 ~~~~~~~~~~~lv~f~----~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~~v~~~Pt~~~ 114 (128)
.+..++++ +++|+-. .+|||+|++.+..|.+.. +.+..+|++++ +.. .+..+-..+|.+++
T Consensus 5 v~~~i~~~-~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~---------i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 5 IKEQIKEN-PVVLYMKGTPQFPQCGFSARAVQILKACG---------VPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHhccC-CEEEEEccCCCCCCCchHHHHHHHHHHcC---------CCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE
Confidence 44455544 4555443 289999999998887742 44566777665 433 34456678898876
Q ss_pred EeCCcccccc
Q psy9104 115 FRNGQVSKAK 124 (128)
Q Consensus 115 ~~~g~~~~~~ 124 (128)
+|+.+..+
T Consensus 74 --~g~~iGG~ 81 (97)
T TIGR00365 74 --KGEFVGGC 81 (97)
T ss_pred --CCEEEeCh
Confidence 67655433
No 184
>KOG3171|consensus
Probab=98.22 E-value=5.1e-06 Score=55.17 Aligned_cols=85 Identities=20% Similarity=0.356 Sum_probs=70.2
Q ss_pred ceEEcC-hhhHHHhhc---cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCC
Q psy9104 34 SVLDLG-DSDFEAVIN---QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGY 109 (128)
Q Consensus 34 ~~~~~~-~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~ 109 (128)
.+.+++ +++|..+++ +...++|.+|.+.-+.|-.+...+.-++.+++. +.|+++-...- ....+|..+.+
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckikss~~--gas~~F~~n~l 212 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKSSNT--GASDRFSLNVL 212 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeeeccc--cchhhhcccCC
Confidence 455654 567888883 346778899999999999999999999999976 89998876544 67889999999
Q ss_pred CEEEEEeCCcccccc
Q psy9104 110 PTLKIFRNGQVSKAK 124 (128)
Q Consensus 110 Pt~~~~~~g~~~~~~ 124 (128)
||+.+|++|+.+..|
T Consensus 213 P~LliYkgGeLIgNF 227 (273)
T KOG3171|consen 213 PTLLIYKGGELIGNF 227 (273)
T ss_pred ceEEEeeCCchhHHH
Confidence 999999999877655
No 185
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.22 E-value=7.1e-06 Score=56.50 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=24.8
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHH
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATD 78 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~ 78 (128)
.++.+++.|..+.||+|+++.+.+.++.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 356779999999999999999888776543
No 186
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.17 E-value=1e-05 Score=52.41 Aligned_cols=33 Identities=18% Similarity=0.442 Sum_probs=29.8
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcC
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKG 81 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~ 81 (128)
.+++.+++|+...||+|+.+.+.+.++.++.++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 578999999999999999999999999888754
No 187
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.15 E-value=1.2e-05 Score=45.91 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=41.9
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhh---hhcCCCCCCEEEEEeCCcccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC---NKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
+..|+.+|||+|...+..|.+ . + +.+..+|++++ ++.. +..+...+|++++ ++..+..|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~--g--I~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~~~~Gf 64 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R--G--FDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDLSWSGF 64 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C--C--CceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCEEEecC
Confidence 678999999999999888854 1 1 67777888876 4432 3346778999976 45444444
No 188
>PRK10638 glutaredoxin 3; Provisional
Probab=98.12 E-value=9.2e-06 Score=46.48 Aligned_cols=60 Identities=17% Similarity=0.332 Sum_probs=41.5
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc---hhhhhhcCCCCCCEEEEEeCCcccccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG---KETCNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
++.|..++||+|++.+..|++.. +.+..+|++++. ..+.+..+...+|++++ +|+.+..+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g---------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~igG~ 66 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG---------VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIGGC 66 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEeCH
Confidence 66888999999999988887632 445556766551 23445557788998855 67766544
No 189
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.09 E-value=4.3e-05 Score=48.67 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=34.2
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHh--cCCCCCeEEEEEeC
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDV--KGADPPISFVKVDC 93 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~--~~~~~~v~~~~vd~ 93 (128)
...+++|+.|.+..||+|.++.+.+.++.+.+ ++. +.+...+.
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~---v~~~~~~~ 54 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGK---VKFVFRPV 54 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTT---EEEEEEES
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCc---eEEEEEEc
Confidence 45678899999999999999999999988887 443 77776665
No 190
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.5e-05 Score=44.50 Aligned_cols=57 Identities=19% Similarity=0.490 Sum_probs=38.9
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc----hhhhhhc-CCCCCCEEEEEeCCccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG----KETCNKH-GVSGYPTLKIFRNGQVS 121 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~-~v~~~Pt~~~~~~g~~~ 121 (128)
++.|..++||+|++.+..|.+. + +.+..+|.++.. .+..++. +.+.+|.+++ +|+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-------g--~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i 64 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-------G--VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV 64 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-------C--CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE
Confidence 6788999999999999888732 2 556666665551 1333344 7889999988 45433
No 191
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.02 E-value=2.2e-05 Score=45.66 Aligned_cols=61 Identities=20% Similarity=0.416 Sum_probs=39.6
Q ss_pred CcEEEEEEc----CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhh----hhhcCCCCCCEEEEEeCCcccc
Q psy9104 51 ETALVMFYA----PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET----CNKHGVSGYPTLKIFRNGQVSK 122 (128)
Q Consensus 51 ~~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 122 (128)
.+++|+-.+ +|||+|++.+..|.+.. +.+..+|++++ +++ .+..+-+.+|.+++ +|+.+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~iG 75 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELVG 75 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEe
Confidence 355555333 79999999988887743 44555666655 433 34457778999865 676554
Q ss_pred c
Q psy9104 123 A 123 (128)
Q Consensus 123 ~ 123 (128)
.
T Consensus 76 G 76 (90)
T cd03028 76 G 76 (90)
T ss_pred C
Confidence 3
No 192
>KOG1752|consensus
Probab=97.96 E-value=4.6e-05 Score=45.51 Aligned_cols=68 Identities=22% Similarity=0.370 Sum_probs=46.6
Q ss_pred HHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhc----CCCCCCEEEEEeCC
Q psy9104 43 FEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKH----GVSGYPTLKIFRNG 118 (128)
Q Consensus 43 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~----~v~~~Pt~~~~~~g 118 (128)
+..++.++ -+|.|..+||++|+.++..|.. . +.+..++.+|.+++..++.+.+ +-+.+|.+++ +|
T Consensus 7 v~~~i~~~--~VVifSKs~C~~c~~~k~ll~~----~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~G 75 (104)
T KOG1752|consen 7 VRKMISEN--PVVIFSKSSCPYCHRAKELLSD----L---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GG 75 (104)
T ss_pred HHHHhhcC--CEEEEECCcCchHHHHHHHHHh----C---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CC
Confidence 34444333 3567888999999998888877 2 2347788888887755665554 3557898888 67
Q ss_pred ccc
Q psy9104 119 QVS 121 (128)
Q Consensus 119 ~~~ 121 (128)
+-+
T Consensus 76 k~i 78 (104)
T KOG1752|consen 76 KFI 78 (104)
T ss_pred EEE
Confidence 644
No 193
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.91 E-value=4.6e-05 Score=43.46 Aligned_cols=54 Identities=30% Similarity=0.489 Sum_probs=45.7
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
+++|+.+.|+-|...+..+.++....+ +.+..+|++++ +.+..+|+. .+|.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-----~~l~~vDI~~d-~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-----FELEEVDIDED-PELFEKYGY-RIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-----CEEEEEETTTT-HHHHHHSCT-STSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-----ceEEEEECCCC-HHHHHHhcC-CCCEEEE
Confidence 688999999999999999988655533 88999999988 999999996 8999777
No 194
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.85 E-value=0.0001 Score=42.51 Aligned_cols=62 Identities=24% Similarity=0.433 Sum_probs=42.7
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-----------------------------chhhhhhc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-----------------------------GKETCNKH 104 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-----------------------------~~~~~~~~ 104 (128)
+.+|+++.||+|..+.+.+.++.....++ .++.+..++.... +....+++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGG-VRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL 79 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCc-EEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence 46899999999999999999987444332 2334443333321 13456678
Q ss_pred CCCCCCEEEEEe
Q psy9104 105 GVSGYPTLKIFR 116 (128)
Q Consensus 105 ~v~~~Pt~~~~~ 116 (128)
+++++||+++.+
T Consensus 80 g~~g~Pt~v~~~ 91 (98)
T cd02972 80 GVTGTPTFVVNG 91 (98)
T ss_pred CCCCCCEEEECC
Confidence 999999999953
No 195
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.1e-05 Score=60.10 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=68.1
Q ss_pred ccCCCceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHH---HHHHHhcCCCCCeEEEEEeCCccchhhhhhcC
Q psy9104 29 SCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYE---KAATDVKGADPPISFVKVDCTEAGKETCNKHG 105 (128)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~ 105 (128)
+..+-+|.+=.++.|..+-.+++|++|-+...||..|+-|..+-- ++++..+. +++-++||.++- +++.+.|.
T Consensus 22 a~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDREER-PDvD~~Ym 97 (667)
T COG1331 22 AHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDREER-PDVDSLYM 97 (667)
T ss_pred cCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeEChhhc-cCHHHHHH
Confidence 334556777788999999999999999999999999999854332 24444443 399999999998 88887774
Q ss_pred --------CCCCCEEEEE-eCCccc
Q psy9104 106 --------VSGYPTLKIF-RNGQVS 121 (128)
Q Consensus 106 --------v~~~Pt~~~~-~~g~~~ 121 (128)
--++|-.+|. +||++.
T Consensus 98 ~~~q~~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 98 NASQAITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred HHHHHhccCCCCceeEEECCCCcee
Confidence 5689976666 588764
No 196
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.85 E-value=0.00068 Score=41.42 Aligned_cols=89 Identities=15% Similarity=0.298 Sum_probs=64.5
Q ss_pred ceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc----cchhhhhhcCC--C
Q psy9104 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE----AGKETCNKHGV--S 107 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~----~~~~~~~~~~v--~ 107 (128)
...+++.-+|+..+.+.+.++|-|-... +--+-...+.+++.+....+.++-++.|.+.+ .|.+++++|++ .
T Consensus 5 G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp TSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred ceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 4578899999999999999999998764 33334467777775544445668888887653 24899999999 5
Q ss_pred CCCEEEEEe-CCcccccc
Q psy9104 108 GYPTLKIFR-NGQVSKAK 124 (128)
Q Consensus 108 ~~Pt~~~~~-~g~~~~~~ 124 (128)
.+|.+.+|. +.+...+|
T Consensus 83 ~fPv~~LF~~~~~~pv~~ 100 (126)
T PF07912_consen 83 DFPVIYLFVGDKEEPVRY 100 (126)
T ss_dssp C-SEEEEEESSTTSEEEE
T ss_pred cCCEEEEecCCCCCCccC
Confidence 689999998 55566666
No 197
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.77 E-value=0.00032 Score=42.45 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=61.3
Q ss_pred EEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHH---hcCCCCCeEEEEEeCCccchhhhhhcCCCC--CC
Q psy9104 36 LDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATD---VKGADPPISFVKVDCTEAGKETCNKHGVSG--YP 110 (128)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~---~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~--~P 110 (128)
.+++.++.......+.|..++|+++ ..-...+..+.+++++ ++++ +.|+.+|.++. ....+.+|++. .|
T Consensus 2 ~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~~-~~~~~~fgl~~~~~P 75 (111)
T cd03072 2 REITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGA---INFLTADGDKF-RHPLLHLGKTPADLP 75 (111)
T ss_pred cccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCce---EEEEEEechHh-hhHHHHcCCCHhHCC
Confidence 4678888888888887877777722 2346778899999999 8766 99999999998 77899999997 89
Q ss_pred EEEEEe
Q psy9104 111 TLKIFR 116 (128)
Q Consensus 111 t~~~~~ 116 (128)
.+.+.+
T Consensus 76 ~i~i~~ 81 (111)
T cd03072 76 VIAIDS 81 (111)
T ss_pred EEEEEc
Confidence 999987
No 198
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.72 E-value=8.6e-05 Score=54.62 Aligned_cols=59 Identities=10% Similarity=0.231 Sum_probs=42.1
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchh---hhhh---------cCCCCCCEEEEEeCCccc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE---TCNK---------HGVSGYPTLKIFRNGQVS 121 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~---~~~~---------~~v~~~Pt~~~~~~g~~~ 121 (128)
++.|..+|||+|++.+..|.+. + +.+..+|++++ +. +.++ .+.+.+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g----i~~~~idi~~~-~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D----IPFTQISLDDD-VKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C----CCeEEEECCCC-hhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 7789999999999998888763 1 66667788766 32 2122 46788999977 66655
Q ss_pred ccc
Q psy9104 122 KAK 124 (128)
Q Consensus 122 ~~~ 124 (128)
..+
T Consensus 72 gGf 74 (410)
T PRK12759 72 GGY 74 (410)
T ss_pred eCc
Confidence 544
No 199
>PRK10824 glutaredoxin-4; Provisional
Probab=97.70 E-value=0.00014 Score=44.27 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=41.6
Q ss_pred hHHHhhccCCcEEEEEEc----CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhh----hcCCCCCCEEE
Q psy9104 42 DFEAVINQHETALVMFYA----PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCN----KHGVSGYPTLK 113 (128)
Q Consensus 42 ~~~~~~~~~~~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~----~~~v~~~Pt~~ 113 (128)
..++.++++ +++|+--+ +|||+|++.+..|.+.. +.+..+|++++ +++.. .-+-..+|.++
T Consensus 7 ~v~~~I~~~-~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 7 KIQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQN-PDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred HHHHHHhcC-CEEEEECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCC-HHHHHHHHHHhCCCCCCeEE
Confidence 344555544 45554443 69999999999887753 22333455554 33333 33556677777
Q ss_pred EEeCCcccccc
Q psy9104 114 IFRNGQVSKAK 124 (128)
Q Consensus 114 ~~~~g~~~~~~ 124 (128)
+ +|+.+..+
T Consensus 76 I--~G~~IGG~ 84 (115)
T PRK10824 76 V--DGELVGGC 84 (115)
T ss_pred E--CCEEEcCh
Confidence 6 77766544
No 200
>PTZ00062 glutaredoxin; Provisional
Probab=97.67 E-value=0.00019 Score=48.02 Aligned_cols=69 Identities=16% Similarity=0.362 Sum_probs=42.4
Q ss_pred HHHhhccCCcEEEEEE----cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhh----cCCCCCCEEEE
Q psy9104 43 FEAVINQHETALVMFY----APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNK----HGVSGYPTLKI 114 (128)
Q Consensus 43 ~~~~~~~~~~~lv~f~----~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~----~~v~~~Pt~~~ 114 (128)
.++.+++ .+++|+-- .|+||+|++.+..|.+.. +.+..+|++++ ++..+. .+-..+|.+++
T Consensus 106 v~~li~~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~---------i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 106 IERLIRN-HKILLFMKGSKTFPFCRFSNAVVNMLNSSG---------VKYETYNIFED-PDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHhc-CCEEEEEccCCCCCCChhHHHHHHHHHHcC---------CCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE
Confidence 3444454 44444433 379999999988887531 55667788766 444333 35556777776
Q ss_pred EeCCcccccc
Q psy9104 115 FRNGQVSKAK 124 (128)
Q Consensus 115 ~~~g~~~~~~ 124 (128)
+|+.+..+
T Consensus 175 --~G~~IGG~ 182 (204)
T PTZ00062 175 --NGELIGGH 182 (204)
T ss_pred --CCEEEcCh
Confidence 67655443
No 201
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.60 E-value=0.00053 Score=52.37 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCc-EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEe-CCcc-cccccc
Q psy9104 50 HET-ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR-NGQV-SKAKKT 126 (128)
Q Consensus 50 ~~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~-~g~~-~~~~~g 126 (128)
.++ .++.|+.+.|..|.+++..++++++. . +++.+...|..++ ...+++|+++..|++.+++ +|+. -.+|.|
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s---~~i~~~~~~~~~~-~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g 439 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASL-S---EKLNSEAVNRGEE-PESETLPKITKLPTVALLDDDGNYTGLKFHG 439 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhc-C---CcEEEEEeccccc-hhhHhhcCCCcCCEEEEEeCCCcccceEEEe
Confidence 445 57788888999999998888887744 3 4488888898888 8999999999999999996 5543 245544
No 202
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.50 E-value=0.0042 Score=38.62 Aligned_cols=81 Identities=12% Similarity=0.253 Sum_probs=59.3
Q ss_pred ceEEcChhhHHHhh-ccCCcEEEEEEcC---CCHHH-hhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCC
Q psy9104 34 SVLDLGDSDFEAVI-NQHETALVMFYAP---WCGHC-KKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108 (128)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~~lv~f~~~---~C~~C-~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~ 108 (128)
.+++++.++..... ..++..+|.|.-. .-+.+ ......+.++++.++++. +.|+.+|.++. ..+.+.|+++.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~-~~~~~~fgl~~ 79 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP--WGWLWTEAGAQ-LDLEEALNIGG 79 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEeCccc-HHHHHHcCCCc
Confidence 56777776664443 4456667777542 22334 456888999999987653 89999999999 88999999864
Q ss_pred --CCEEEEEeC
Q psy9104 109 --YPTLKIFRN 117 (128)
Q Consensus 109 --~Pt~~~~~~ 117 (128)
+|++++++.
T Consensus 80 ~~~P~v~i~~~ 90 (130)
T cd02983 80 FGYPAMVAINF 90 (130)
T ss_pred cCCCEEEEEec
Confidence 899999873
No 203
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.28 E-value=0.0021 Score=38.84 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=54.3
Q ss_pred EcChhhHHHhhccCCcEEEEEE----cCCCHHHhhhcHHHHHHHHHhc-CCCCCeEEEEEeCCccchhhhhhcCCCC---
Q psy9104 37 DLGDSDFEAVINQHETALVMFY----APWCGHCKKLKPEYEKAATDVK-GADPPISFVKVDCTEAGKETCNKHGVSG--- 108 (128)
Q Consensus 37 ~~~~~~~~~~~~~~~~~lv~f~----~~~C~~C~~~~~~l~~~~~~~~-~~~~~v~~~~vd~~~~~~~~~~~~~v~~--- 108 (128)
+++.++..... ..+.++.|+ +..-..-..+...+.++++.++ ++ +.|+.+|.++. ....+.+|++.
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk---i~Fv~~D~~~~-~~~l~~fgl~~~~~ 76 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK---LNFAVADKEDF-SHELEEFGLDFSGG 76 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe---EEEEEEcHHHH-HHHHHHcCCCcccC
Confidence 45566666553 344444443 2233445678999999999998 56 99999999988 67889999984
Q ss_pred -CCEEEEEe
Q psy9104 109 -YPTLKIFR 116 (128)
Q Consensus 109 -~Pt~~~~~ 116 (128)
.|++.+.+
T Consensus 77 ~~P~~~i~~ 85 (111)
T cd03073 77 EKPVVAIRT 85 (111)
T ss_pred CCCEEEEEe
Confidence 89999987
No 204
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.28 E-value=0.0042 Score=36.12 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=54.2
Q ss_pred hhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCC-c
Q psy9104 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNG-Q 119 (128)
Q Consensus 41 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g-~ 119 (128)
+.++..+..+++++|-|+.+++. .....+.+.++.+++. +.|..++ + ..+.+++++. .|++++|++. +
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~---~~F~~~~---~-~~~~~~~~~~-~~~i~l~~~~~~ 76 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDD---YGFGHTS---D-KEVAKKLKVK-PGSVVLFKPFEE 76 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccC---CeEEEEC---h-HHHHHHcCCC-CCceEEeCCccc
Confidence 44555678889999999999887 4556777888777654 7776666 2 5677778764 4899988753 4
Q ss_pred cccccccc
Q psy9104 120 VSKAKKTE 127 (128)
Q Consensus 120 ~~~~~~g~ 127 (128)
....|.|.
T Consensus 77 ~~~~y~g~ 84 (97)
T cd02981 77 EPVEYDGE 84 (97)
T ss_pred CCccCCCC
Confidence 45667764
No 205
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.12 E-value=0.0033 Score=41.08 Aligned_cols=33 Identities=27% Similarity=0.598 Sum_probs=24.9
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEE
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~v 91 (128)
+|..|.|+.|-..+|.+.++..++.+. +.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEE
Confidence 689999999999999999999998765 544444
No 206
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.03 E-value=0.0023 Score=40.68 Aligned_cols=58 Identities=16% Similarity=0.302 Sum_probs=38.5
Q ss_pred EEEEEcC------CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCC----CCCCEEEEEeCCcc
Q psy9104 54 LVMFYAP------WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGV----SGYPTLKIFRNGQV 120 (128)
Q Consensus 54 lv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v----~~~Pt~~~~~~g~~ 120 (128)
++.|+++ +|++|++.+..|+... +.+..+|++.+ ..++.+.++- ..+|.+++ +|+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~---------V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~ 70 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFR---------VKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRY 70 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCC---------CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEE
Confidence 4556666 8999999988887632 66777888765 1234444443 57888887 6665
Q ss_pred cc
Q psy9104 121 SK 122 (128)
Q Consensus 121 ~~ 122 (128)
+.
T Consensus 71 IG 72 (147)
T cd03031 71 LG 72 (147)
T ss_pred Ee
Confidence 44
No 207
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0012 Score=42.26 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=58.8
Q ss_pred EEcChhhHHHhhccCCcEEEEEE-cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc------------------
Q psy9104 36 LDLGDSDFEAVINQHETALVMFY-APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA------------------ 96 (128)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~------------------ 96 (128)
...+++.+....-++++++|+|| .+++|.|....-.|.+...++...+ ...+.|..+..
T Consensus 16 p~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~~~~~~F~~k~~L~f~LLS 93 (157)
T COG1225 16 PDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSPKSHKKFAEKHGLTFPLLS 93 (157)
T ss_pred ecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHHhCCCceeeE
Confidence 33444444444467889999999 6899999999999999999988755 66666665533
Q ss_pred --chhhhhhcCCCC------------CCE-EEEEeCCcccccc
Q psy9104 97 --GKETCNKHGVSG------------YPT-LKIFRNGQVSKAK 124 (128)
Q Consensus 97 --~~~~~~~~~v~~------------~Pt-~~~~~~g~~~~~~ 124 (128)
+..+++.|++-. .++ +++-++|++...+
T Consensus 94 D~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 94 DEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 256777777633 233 4444578765444
No 208
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.98 E-value=0.0082 Score=35.52 Aligned_cols=82 Identities=22% Similarity=0.398 Sum_probs=60.8
Q ss_pred hhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc-cchhhhhhcCCC----CCCE-EE
Q psy9104 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE-AGKETCNKHGVS----GYPT-LK 113 (128)
Q Consensus 40 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~v~----~~Pt-~~ 113 (128)
..+|...+.....|++.|..+--..-. ....+.+.+....+. =.++.|||.. +...+|+++++. .-|. +.
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~a~~-~Lk~~~~~A~~vkG~---gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKSAEA-LLKLLSDVAQAVKGQ---GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhhHHH-HHHHHHHHHHHhcCc---eeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 467888887788888888876433333 345777888888876 5788899986 238999999998 6665 55
Q ss_pred EEeCCccccccc
Q psy9104 114 IFRNGQVSKAKK 125 (128)
Q Consensus 114 ~~~~g~~~~~~~ 125 (128)
.|+||.--..|.
T Consensus 85 HYKdG~fHkdYd 96 (112)
T cd03067 85 HYKDGDFHTEYN 96 (112)
T ss_pred cccCCCcccccc
Confidence 688998776665
No 209
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.90 E-value=0.015 Score=38.98 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=55.0
Q ss_pred EEcChhhHHHhhccCCcEEEEEEcCCCH-HHhhhcHHHHHHHHHhc-CCCC--CeEEEEEeCCccchhhhhhcCC-CCCC
Q psy9104 36 LDLGDSDFEAVINQHETALVMFYAPWCG-HCKKLKPEYEKAATDVK-GADP--PISFVKVDCTEAGKETCNKHGV-SGYP 110 (128)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~-~~~~--~v~~~~vd~~~~~~~~~~~~~v-~~~P 110 (128)
...+++.+....-++++++|+|.=+.|| -|-.....+.++.+... .... .+.++.+|-++++++..++|.. ...|
T Consensus 53 ~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~ 132 (207)
T COG1999 53 TDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDP 132 (207)
T ss_pred ecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCC
Confidence 3444555555556899999999977775 47777777777777766 3333 4566666666666777888877 6667
Q ss_pred EEEEEe
Q psy9104 111 TLKIFR 116 (128)
Q Consensus 111 t~~~~~ 116 (128)
.+..+.
T Consensus 133 ~~~~lt 138 (207)
T COG1999 133 RWIGLT 138 (207)
T ss_pred Ceeeee
Confidence 666654
No 210
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.78 E-value=0.0055 Score=39.93 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=43.4
Q ss_pred eEEcChhhHHHhhccCCcEEEEEEcCCC-HHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc
Q psy9104 35 VLDLGDSDFEAVINQHETALVMFYAPWC-GHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95 (128)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C-~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~ 95 (128)
+.+.+++.+....-++++++|.|.=+.| ..|-.....+.++.+.+...+.++.++.|..|.
T Consensus 37 L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 37 LTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp EEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred EEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 4555556565554578999999998888 568888888888877776544557777777664
No 211
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.72 E-value=0.0073 Score=33.58 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=50.1
Q ss_pred EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEE
Q psy9104 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115 (128)
Q Consensus 53 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~ 115 (128)
.+..|-+...+.+++....+.++.++..+ .++.+-.+|+.++ +.+++.+++-.+||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~--~~~~LeVIDv~~~-P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG--GPYELEVIDVLKQ-PQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC--CcEEEEEEEcccC-HhHHhhCCEEEechhhhc
Confidence 46667777779999998999998888763 3488999999999 999999999999997643
No 212
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=96.66 E-value=0.0074 Score=33.11 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=37.0
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
.+|+.++|+.|++.+-.+.+..- .+....+|.....+++.+......+|++.. ++|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl-------~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI-------TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC-------CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 46788999999888766655322 256666766543245555555668899864 23544
No 213
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.58 E-value=0.0045 Score=39.56 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=31.7
Q ss_pred cCCcEEEEEE-cCCCHHHhhh-cHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 49 QHETALVMFY-APWCGHCKKL-KPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 49 ~~~~~lv~f~-~~~C~~C~~~-~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
++++++|+|| +.|||.|... .+.+.+..+++...+.. .++.+..+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~-~V~~iS~D 74 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVD-EVICVSVN 74 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCC-EEEEEECC
Confidence 3455666655 8899999998 99999999998765521 35555544
No 214
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=96.49 E-value=0.012 Score=33.87 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcccccccccC
Q psy9104 51 ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTEL 128 (128)
Q Consensus 51 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 128 (128)
..++=.|.+..-|.+++....+.++.++.... .+.+-.+|+.++ +.+++.+++-.+||++=...+ +..+..|++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g--~y~LeVIDv~~q-P~lAE~~~IvATPtLIK~~P~-P~rriiGdl 76 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQG--VYALKVIDVLKN-PQLAEEDKILATPTLSKILPP-PVRKIIGDL 76 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEcccC-HhHHhHCCEEEecHHhhcCCC-Ccceeeccc
Confidence 45566788888999999999999988876543 288888999999 999999999999997644322 455666653
No 215
>PRK09301 circadian clock protein KaiB; Provisional
Probab=96.47 E-value=0.013 Score=34.86 Aligned_cols=75 Identities=9% Similarity=0.038 Sum_probs=58.7
Q ss_pred CCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcccccccccC
Q psy9104 50 HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTEL 128 (128)
Q Consensus 50 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 128 (128)
+..++=.|.+..-+.+++....+.++.++..... +.+-.+|+.++ +.+++.+++-.+||++=.... +..+..|++
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~--y~LeVIDv~~q-PelAE~~~IvATPTLIK~~P~-P~rriiGDl 79 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGV--YALKVIDVLKN-PQLAEEDKILATPTLAKILPP-PVRKIIGDL 79 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCc--eEEEEEEcccC-HhHHhHCCeEEecHHhhcCCC-Ccceeeccc
Confidence 4566777889999999999999999888765432 88888999999 999999999999997643322 455666653
No 216
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.042 Score=37.47 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=23.9
Q ss_pred CcEEEEEEcCCCHHHhhhcHHHHHHHHHhc
Q psy9104 51 ETALVMFYAPWCGHCKKLKPEYEKAATDVK 80 (128)
Q Consensus 51 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~ 80 (128)
+..++.|....||+|++..+.+++......
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 678899999999999888888888555443
No 217
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.75 E-value=0.013 Score=39.92 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=47.1
Q ss_pred CCCceEEcChhh---HHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC
Q psy9104 31 DESSVLDLGDSD---FEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93 (128)
Q Consensus 31 ~~~~~~~~~~~~---~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~ 93 (128)
.+..+..++++. +.+..+.++|.+|.|.|-.||+-..-.+.++++.+++.+. ..|+.|-+
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI 142 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYI 142 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhH
Confidence 456678888877 3334488999999999999999999999999999998764 44554443
No 218
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=95.58 E-value=0.026 Score=30.79 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=33.2
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
..++.++||+|++.+-.+....- .+....+|..+. ....+..+-..+|++.. ++|..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl-------~~~~~~~~~~~~-~~~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI-------PVEQIILQNDDE-ATPIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC-------CeEEEECCCCch-HHHHHhcCCCccCEEEe-CCCeE
Confidence 36778999999988776655322 244445554433 33334444567898754 33543
No 219
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=95.45 E-value=0.085 Score=29.17 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=38.9
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCccc
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVS 121 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 121 (128)
+++.++|++|++.+-.++...- .+.+..++..+....+.+......+|++. .+|..+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i-------~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l 57 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI-------PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL 57 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE-------EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE
T ss_pred CCCcCCChHHHHHHHHHHHcCC-------eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE
Confidence 4788999999998766655332 16667777665435566666677899997 456643
No 220
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=95.17 E-value=0.058 Score=29.38 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=33.2
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
..|+.++|+.|++.+-.+.+..- .+....+|.....+++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi-------~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV-------SVEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC-------ccEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 56888999999998777655322 24555566544324455555566889774
No 221
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.041 Score=30.74 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=36.7
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc-------------h--hhhhhcCCCCCCEEEEEeCCc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG-------------K--ETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~-------------~--~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
++|++.-||.|..+...++++.-. +-.|++.+.- + +-.+..+--++|++..- ||+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~---------yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD---------YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC---------ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCc
Confidence 689999999999998888776533 3334444331 1 22345566688998764 555
Q ss_pred cc
Q psy9104 120 VS 121 (128)
Q Consensus 120 ~~ 121 (128)
.+
T Consensus 75 vV 76 (85)
T COG4545 75 VV 76 (85)
T ss_pred EE
Confidence 44
No 222
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.87 E-value=0.071 Score=29.51 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=32.4
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEE
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~ 115 (128)
+..|+.+.||.|++.+-.+.+..-. +....+|.... .++ +.-+...+|+++.-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~-------y~~~~~~~~~~-~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP-------YEVVEVNPVSR-KEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc-------eEEEECCchhH-HHH-HHhCCCccCEEEEC
Confidence 4578889999999998776653322 33444443222 333 33445679998764
No 223
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.85 E-value=0.06 Score=29.98 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=30.7
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-chhhhhhcCCCCCCEEEE
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-GKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~v~~~Pt~~~ 114 (128)
+..|+.++|++|.+.+..+.+..-. +....++..+. .+++.+.-+...+|+++.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~-------y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD-------VILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc-------EEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 3567788999999887777654322 33333332221 133433334567899854
No 224
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=94.78 E-value=0.067 Score=28.24 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=33.7
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccch-hhhhhcCCCCCCEEEE
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK-ETCNKHGVSGYPTLKI 114 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~v~~~Pt~~~ 114 (128)
.+|+.++|+.|.+.+..+....-. +....++..+... .+.+..+...+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~-------~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP-------YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC-------cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 367889999999887777664322 4555555544311 2445566778898765
No 225
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.68 E-value=0.037 Score=32.85 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=23.5
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~ 95 (128)
+..|+.++|+.|++.+..|++.. +.+..+|..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~---------i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHG---------IEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcC---------CCcEEEeecc
Confidence 35789999999999987776632 4455556544
No 226
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=94.67 E-value=0.47 Score=32.84 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=28.4
Q ss_pred hhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcC
Q psy9104 46 VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKG 81 (128)
Q Consensus 46 ~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~ 81 (128)
....+|+.+++..+.|||.|-..+-.|-.....+.+
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 347799999999999999998887666666655543
No 227
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.40 E-value=0.079 Score=32.13 Aligned_cols=30 Identities=17% Similarity=0.553 Sum_probs=25.3
Q ss_pred CcEEEEEEcCCCHHHhhhcHHHHHHHHHhc
Q psy9104 51 ETALVMFYAPWCGHCKKLKPEYEKAATDVK 80 (128)
Q Consensus 51 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~ 80 (128)
|.+++.|..|.|+-|......+.++..++.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999998888877766643
No 228
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=94.14 E-value=0.15 Score=27.59 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=33.7
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc---cchhhhhhcCCCCCCEEEE
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE---AGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~~v~~~Pt~~~ 114 (128)
.+|+.++|+.|++.+-.+....-. +....+|..+ ..+.+.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~-------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID-------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC-------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 468889999999988777664322 4445555432 1134455555668899875
No 229
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.92 E-value=0.31 Score=31.33 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=40.1
Q ss_pred hcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCC-ccccccccc
Q psy9104 68 LKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNG-QVSKAKKTE 127 (128)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~ 127 (128)
....+.++++.+.+. +.|+.++ + .++++.+++.. |++++|+++ +....|.|.
T Consensus 8 ~~~~f~~~A~~~~~~---~~F~~~~---~-~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~ 60 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGD---YQFGVTF---N-EELAKKYGIKE-PTIVVYKKFDEKPVVYDGD 60 (184)
T ss_dssp HHHHHHHHHHHHTTT---SEEEEEE-----HHHHHHCTCSS-SEEEEEECTTTSEEEESSS
T ss_pred HHHHHHHHHHhCcCC---cEEEEEc---H-HHHHHHhCCCC-CcEEEeccCCCCceecccc
Confidence 456788888888765 8888887 2 77899999988 999999864 345667764
No 230
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=93.78 E-value=0.71 Score=27.03 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=35.6
Q ss_pred CCcE-EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc-cccccc
Q psy9104 50 HETA-LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV-SKAKKT 126 (128)
Q Consensus 50 ~~~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g 126 (128)
.+|+ ++.|..+. +.|..++..++++++.- +++.+...+. . . ..|++.+..+|+. -.+|.|
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS----dkI~~~~~~~--~--~--------~~P~~~i~~~~~~~gIrF~G 79 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLS----DKITLEEDND--D--E--------RKPSFSINRPGEDTGIRFAG 79 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC----CceEEEEecC--C--C--------CCCEEEEecCCCcccEEEEe
Confidence 4455 55565555 99988888887777652 3355543221 1 1 4799999876632 244544
No 231
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.72 E-value=0.12 Score=31.07 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=23.5
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~ 96 (128)
..|+.++|+.|++.+..|++.. +.+..+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~---------i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHG---------VDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcC---------CceEEecccCC
Confidence 4788999999999988776621 45555665543
No 232
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=93.66 E-value=0.028 Score=32.09 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=45.3
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
.|-+..-+.+.+....+..+.+...+ .++.+-.+|+.++ +.+++.+++-.+||++-
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~--~~~~LeVIDv~~~-P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLG--GRYELEVIDVLEQ-PELAEEDRIVATPTLIK 57 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCT--TTEEEEEEETTTS-HSHHTTTEEECHHHHHT
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCC--CcEEEEEEEcccC-HhHHhHCCeeecceEee
Confidence 45566667778888888888877553 3489999999999 99999999999999753
No 233
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=93.26 E-value=0.13 Score=31.17 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=24.4
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~ 96 (128)
..|+.++|+.|++.+..|++. + +.+..+|..+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~----i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----G----IEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----C----CceEEEecCCC
Confidence 478999999999998887762 1 55666676654
No 234
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=93.26 E-value=0.14 Score=31.80 Aligned_cols=34 Identities=26% Similarity=0.542 Sum_probs=23.8
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~ 96 (128)
+..|+.++|+.|++.+..|++.. +.+..+|..++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~g---------i~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHD---------IPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC---------CCcEEeeccCC
Confidence 45788999999999887776532 44555665544
No 235
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=93.09 E-value=0.99 Score=27.31 Aligned_cols=45 Identities=16% Similarity=0.348 Sum_probs=29.2
Q ss_pred hhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeC
Q psy9104 67 KLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRN 117 (128)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~ 117 (128)
.+++....+.+-...... ..-+.+| +.+.++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~-~~~v~Id-----P~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDP-CPGVQID-----PRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCC-CcceeEC-----hhHHhhCCceEcCEEEEEcC
Confidence 555555555555443321 1122334 88999999999999999876
No 236
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=93.07 E-value=0.39 Score=27.47 Aligned_cols=55 Identities=11% Similarity=0.235 Sum_probs=35.5
Q ss_pred EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 53 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
.+.+|+.+.|+.|++.+-.+.... ..+....+|.....+.+.+......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~g-------l~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKN-------IPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcC-------CCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 356678889999998866665532 2255666665443133555555678899875
No 237
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=1.4 Score=32.41 Aligned_cols=77 Identities=13% Similarity=0.297 Sum_probs=50.4
Q ss_pred EcChhhHHHhhc-cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEE
Q psy9104 37 DLGDSDFEAVIN-QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115 (128)
Q Consensus 37 ~~~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~ 115 (128)
..+++-+++.-. .+..-+=-|++-.|+.|-.....|+-.+- .++++.-..+|..-- .+-.+.-++.++||+++
T Consensus 102 k~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msv----lNp~I~H~~IdGa~F-q~Evear~IMaVPtvfl- 175 (520)
T COG3634 102 KEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSV----LNPRIKHTAIDGALF-QDEVEARNIMAVPTVFL- 175 (520)
T ss_pred chhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHh----cCCCceeEEecchhh-HhHHHhccceecceEEE-
Confidence 344555555542 34455556788899999666555543332 356688999997655 45556668999999987
Q ss_pred eCCcc
Q psy9104 116 RNGQV 120 (128)
Q Consensus 116 ~~g~~ 120 (128)
||+.
T Consensus 176 -nGe~ 179 (520)
T COG3634 176 -NGEE 179 (520)
T ss_pred -cchh
Confidence 5654
No 238
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=92.52 E-value=0.34 Score=26.32 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=33.7
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEE
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~ 114 (128)
.+|+.+.|+.|++.+-.+.+..- .+....+|..+. .+++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi-------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL-------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC-------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 46889999999887776665422 255555664332 144555555668899953
No 239
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=92.23 E-value=0.27 Score=29.34 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.0
Q ss_pred EEEEEcCCCHHHhhhcHHHHHH
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKA 75 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~ 75 (128)
+..|+.++|+.|++.+..|++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc
Confidence 3578999999999988877663
No 240
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=91.44 E-value=0.39 Score=29.02 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=17.6
Q ss_pred EEEEEcCCCHHHhhhcHHHHH
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEK 74 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~ 74 (128)
+..|+.++|+.|++.+..|++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE 22 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 457889999999998888876
No 241
>KOG2640|consensus
Probab=91.20 E-value=0.063 Score=38.00 Aligned_cols=74 Identities=18% Similarity=0.434 Sum_probs=51.6
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcccccccc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKT 126 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 126 (128)
++..++-+.||+.|||..+..++++.-...-+.. +....++-...-+.....|++.+.|++.+.+.- -..+|.|
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~~ 147 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYRG 147 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccc----cccccHHHHhhcccchhccccccCCcceeeccc-cchhhcc
Confidence 3478999999999999999999999887766652 333333332222677888999999998876432 2334443
No 242
>PRK12559 transcriptional regulator Spx; Provisional
Probab=91.10 E-value=0.38 Score=29.94 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=17.5
Q ss_pred EEEEEcCCCHHHhhhcHHHHH
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEK 74 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~ 74 (128)
+..|+.++|+.|++....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 467889999999998877765
No 243
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=90.65 E-value=2.2 Score=26.56 Aligned_cols=80 Identities=15% Similarity=0.336 Sum_probs=43.8
Q ss_pred ChhhHHHhhc-cCCcEEEEEEcCCCHHH--hhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcC---CCCCCEE
Q psy9104 39 GDSDFEAVIN-QHETALVMFYAPWCGHC--KKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHG---VSGYPTL 112 (128)
Q Consensus 39 ~~~~~~~~~~-~~~~~lv~f~~~~C~~C--~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~---v~~~Pt~ 112 (128)
+.++.++.++ +.+..+|..-|- |+ | -..+|-....... ..+..++.-+....|++...-++.|= .-+-|++
T Consensus 23 T~e~Vd~~~~~~~GTtlVvVNSV-CG-CAag~ARPa~~~al~~-~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPSSPS~ 99 (136)
T PF06491_consen 23 TAEEVDEALKNKEGTTLVVVNSV-CG-CAAGNARPAAAMALQN-DKKPDHLVTVFAGQDKEATAKAREYFEPYPPSSPSI 99 (136)
T ss_dssp SHHHHHHHHHH--SEEEEEEE-S-SH-HHHHTHHHHHHHHHHH-SS--SEEEEEETTTSHHHHHHHHHTSTTS---SSEE
T ss_pred CHHHHHHHHhCCCCcEEEEEecc-cc-ccccccCHHHHHHHhC-CCCCCceEEeccCCCHHHHHHHHHhcCCCCCCCchh
Confidence 4677888886 666777666554 53 4 3345555444333 33334566666666665333344442 3467899
Q ss_pred EEEeCCccc
Q psy9104 113 KIFRNGQVS 121 (128)
Q Consensus 113 ~~~~~g~~~ 121 (128)
.+++||+.+
T Consensus 100 ALfKdGelv 108 (136)
T PF06491_consen 100 ALFKDGELV 108 (136)
T ss_dssp EEEETTEEE
T ss_pred eeeeCCEEE
Confidence 999999864
No 244
>KOG2507|consensus
Probab=90.57 E-value=1.5 Score=32.65 Aligned_cols=79 Identities=9% Similarity=0.038 Sum_probs=50.0
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-chhhhhhcCCCCCCEEEEEe-CCccccccc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-GKETCNKHGVSGYPTLKIFR-NGQVSKAKK 125 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~ 125 (128)
+.++.++|.|-+...-...++...-..-+..-......++.++++.... ...+..-|.+-.+|++++.. .|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 5667777777777777777775322222221122223367777776543 15667788999999988875 888877666
Q ss_pred c
Q psy9104 126 T 126 (128)
Q Consensus 126 g 126 (128)
|
T Consensus 96 g 96 (506)
T KOG2507|consen 96 G 96 (506)
T ss_pred c
Confidence 5
No 245
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=90.10 E-value=0.24 Score=30.84 Aligned_cols=22 Identities=9% Similarity=0.376 Sum_probs=20.0
Q ss_pred hhhhhhcCCCCCCEEEEEeCCc
Q psy9104 98 KETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 98 ~~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
+.+.++|+|+.+|++++.+++.
T Consensus 61 P~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 61 PQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred hHHHhhcCceEcCEEEEECCCC
Confidence 8899999999999999998663
No 246
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=89.87 E-value=1.2 Score=26.75 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=44.9
Q ss_pred eEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc
Q psy9104 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95 (128)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~ 95 (128)
+..++++.+.-..-++++++|.=.|+.|+.-. .-..|+++.+.+...+ +.++...++.
T Consensus 6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 34455555444456789999999999999998 6679999999998654 8888888764
No 247
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=89.87 E-value=2.6 Score=24.66 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=49.0
Q ss_pred ChhhHHHhhc-cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeC
Q psy9104 39 GDSDFEAVIN-QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRN 117 (128)
Q Consensus 39 ~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~ 117 (128)
+.++++..++ .+..++|-|+.+--. .....+.+.++.++.. ..|..... ..+.+.+++. .|+++++++
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d---~~F~~~~~----~~~~~~~~~~-~~~i~l~~~ 75 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPY---IKFFATFD----SKVAKKLGLK-MNEVDFYEP 75 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcC---CEEEEECc----HHHHHHcCCC-CCcEEEeCC
Confidence 3455777777 777888877766444 3345677777777554 66644332 5567777764 688888864
Q ss_pred -Ccccccc-cc
Q psy9104 118 -GQVSKAK-KT 126 (128)
Q Consensus 118 -g~~~~~~-~g 126 (128)
.+....| .|
T Consensus 76 ~~e~~~~y~~g 86 (102)
T cd03066 76 FMEEPVTIPDK 86 (102)
T ss_pred CCCCCcccCCC
Confidence 4334446 44
No 248
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=89.64 E-value=0.8 Score=31.37 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=41.9
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCC-CCeEEEEEeCCcc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGAD-PPISFVKVDCTEA 96 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~v~~~~vd~~~~ 96 (128)
..+..+||-+-..+|..|......++.+...+++.+ +++.|..||-...
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 567888999999999999999999999998887655 4899999997654
No 249
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=89.50 E-value=1.2 Score=24.38 Aligned_cols=57 Identities=9% Similarity=-0.013 Sum_probs=34.4
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
..|+.+.|+.|++.+-.+.+.. ..+....+|.... .+++.+.-....+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~g-------l~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKG-------LRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcC-------CCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 4678889999988765554432 2255666665322 13354444556789985 36654
No 250
>KOG2244|consensus
Probab=89.47 E-value=0.23 Score=38.10 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=54.5
Q ss_pred ceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcH-HHHH--HHHHhcCCCCCeEEEEEeCCccchhhhhh-------
Q psy9104 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKP-EYEK--AATDVKGADPPISFVKVDCTEAGKETCNK------- 103 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~-~l~~--~~~~~~~~~~~v~~~~vd~~~~~~~~~~~------- 103 (128)
.|.+-.++.|+.+-++++|+++-..-+.|..|+-++. .++. ..+...+ +++-++||.++. +++-+-
T Consensus 96 dwypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilne---nfv~ikVDREER-PDVDK~YM~Fv~a 171 (786)
T KOG2244|consen 96 DWYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE---NFVKIKVDREER-PDVDKLYMAFVVA 171 (786)
T ss_pred ccCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhh---hhhhhccChhhc-CchHHHHHHHHHh
Confidence 4455556778888899999999999999999988854 3333 4444443 377777887777 776663
Q ss_pred -cCCCCCCEEEEE
Q psy9104 104 -HGVSGYPTLKIF 115 (128)
Q Consensus 104 -~~v~~~Pt~~~~ 115 (128)
++--++|-=+++
T Consensus 172 ssg~GGWPmsV~L 184 (786)
T KOG2244|consen 172 SSGGGGWPMSVFL 184 (786)
T ss_pred ccCCCCCceeEEe
Confidence 355677765554
No 251
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=89.24 E-value=0.97 Score=28.14 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=23.2
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~ 96 (128)
+..|+.++|+.|++.+.-|++.. +.+..+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~---------i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQ---------LSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC---------CCeEEEECCCC
Confidence 45788899999999877665521 45555665543
No 252
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=89.12 E-value=1.4 Score=28.53 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=30.6
Q ss_pred EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEe
Q psy9104 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92 (128)
Q Consensus 53 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd 92 (128)
.|.+|++..||+|-...+.+.++.+.+++ .++.+..+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~--~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD--VEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT--CEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CcEEEeccc
Confidence 36789999999999999999999999843 236666664
No 253
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.71 E-value=1.5 Score=26.01 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=44.7
Q ss_pred hhHHHhhccCCcEEEEEEcCC---CHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcC-CCCCCEEE-EE
Q psy9104 41 SDFEAVINQHETALVMFYAPW---CGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHG-VSGYPTLK-IF 115 (128)
Q Consensus 41 ~~~~~~~~~~~~~lv~f~~~~---C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~-v~~~Pt~~-~~ 115 (128)
+-+++.++.++.++.+=.++- |.++.+....|.... . +.+..+|+-++ +++.+..+ .+.+||+- +|
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g-------~-v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLy 76 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACG-------V-VDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLY 76 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcC-------C-cceeEEeeccC-HHHHhccHhhcCCCCCceee
Confidence 345556666665555555554 555544444433221 1 56888899999 88887774 56789975 44
Q ss_pred eCCcccc
Q psy9104 116 RNGQVSK 122 (128)
Q Consensus 116 ~~g~~~~ 122 (128)
-+|+-+.
T Consensus 77 i~GEfvG 83 (105)
T COG0278 77 VNGEFVG 83 (105)
T ss_pred ECCEEec
Confidence 5887543
No 254
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.59 E-value=3.6 Score=31.43 Aligned_cols=63 Identities=14% Similarity=0.025 Sum_probs=38.9
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc-cccccc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV-SKAKKT 126 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g 126 (128)
.-.+++-+.++.+.|+.|.+++..++++++.- +++.+...+ . . ...|++.+.++|+. -.+|.|
T Consensus 16 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s----~~i~~~~~~---~-~--------~~~p~~~~~~~~~~~~i~f~g 79 (517)
T PRK15317 16 LLERPIELVASLDDSEKSAELKELLEEIASLS----DKITVEEDS---L-D--------VRKPSFSITRPGEDTGVRFAG 79 (517)
T ss_pred hCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC----CceEEEEcc---C-C--------CCCCEEEEEcCCccceEEEEe
Confidence 34566655555558999998888888877663 335553322 1 1 34799988876643 234443
No 255
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=88.17 E-value=3.8 Score=24.73 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=58.0
Q ss_pred EcChhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhh----hhcCCC-CC
Q psy9104 37 DLGDSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC----NKHGVS-GY 109 (128)
Q Consensus 37 ~~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~----~~~~v~-~~ 109 (128)
.++.+++-+.- .-++..++.|-..--|.-.++.+.+.++++.... ++++.++.||-++- +-+. +.|+|. .-
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~-np~LsiIWIDPD~F-Pllv~yWektF~IDl~~ 82 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTD-NPDLSIIWIDPDDF-PLLVPYWEKTFGIDLFR 82 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCc-CCCceEEEECCccC-chhhHHHHhhcCcccCC
Confidence 34455544443 4468889999999999999999999999999774 68899999999987 5554 345554 34
Q ss_pred CEEEEEe
Q psy9104 110 PTLKIFR 116 (128)
Q Consensus 110 Pt~~~~~ 116 (128)
|.+-+.+
T Consensus 83 PqIGVV~ 89 (120)
T cd03074 83 PQIGVVN 89 (120)
T ss_pred CceeeEe
Confidence 8775553
No 256
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.05 E-value=3.9 Score=31.24 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=38.6
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc-cccccc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV-SKAKKT 126 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g 126 (128)
+-.+|+-+.++.+.|+.|.+++..++++++.- +++.+..-+.+. ...|++.+..+|+. -.+|.|
T Consensus 16 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s----~ki~~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g 80 (515)
T TIGR03140 16 SLENPVTLVLSAGSHEKSKELLELLDEIASLS----DKISLTQNTADT-----------LRKPSFTILRDGADTGIRFAG 80 (515)
T ss_pred hcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC----CCeEEEEecCCc-----------CCCCeEEEecCCcccceEEEe
Confidence 34556655555447999988888887777663 336664433221 34599988876652 244444
No 257
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=87.29 E-value=2.2 Score=22.81 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=31.8
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEE
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~ 114 (128)
.+|+.+.|+.|.+.+-.+....- .+....+|..+. .+.+.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI-------PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-------CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 46788999999888666655322 255555654321 133444444557899865
No 258
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=87.22 E-value=4.3 Score=23.87 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=43.3
Q ss_pred ChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEE
Q psy9104 39 GDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115 (128)
Q Consensus 39 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~ 115 (128)
+.++++..+..++.++|-|+.+--. .....+.+.+..++.. ..|..... ..+.+.+++ .|++++|
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d---~~F~~~~~----~~~~~~~~~--~~~ivl~ 71 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRES---FRFAHTSD----KQLLEKYGY--GEGVVLF 71 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhc---CEEEEECh----HHHHHhcCC--CCceEEE
Confidence 3455677677777888877766443 3446677777777554 66754442 566788888 6888887
No 259
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=85.82 E-value=1.5 Score=28.45 Aligned_cols=27 Identities=33% Similarity=0.677 Sum_probs=24.3
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVK 80 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~ 80 (128)
+.+|+.+.||+|-...+.+.++.+.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 668899999999999999999998873
No 260
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=85.01 E-value=0.97 Score=26.97 Aligned_cols=57 Identities=16% Similarity=0.294 Sum_probs=34.2
Q ss_pred EEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCC--CCCEEEE-EeCCc
Q psy9104 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS--GYPTLKI-FRNGQ 119 (128)
Q Consensus 57 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~--~~Pt~~~-~~~g~ 119 (128)
||..+||.|......+.+... . ..+.++.+..... ..+.+.++++ ...+.+. .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~---~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--G---GRLRFVDIQSEPD-QALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--C---CCEEEEECCChhh-hhHHHhcCcCHHHHcCeeEEecCCC
Confidence 789999999998887777622 1 2266655432333 3445666665 3344444 45775
No 261
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=84.33 E-value=4.6 Score=21.83 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=32.3
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc---cchhhhhhcCCCCCCEEE
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE---AGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~---~~~~~~~~~~v~~~Pt~~ 113 (128)
+-+|+.+.|+.|++..-.+....-. +....+|... ..+.+.+......+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~-------~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD-------YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC-------cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 4567778899998887766653322 4455555432 113455555567789875
No 262
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=83.72 E-value=5.1 Score=21.54 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=34.0
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
..|+.+.|+.|.+.+-.+... +.+..+..+.+|..+..+.+.+......+|++.. .+|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~-----~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~ 60 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHET-----GLGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGE 60 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHh-----CCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCC
Confidence 357788999998776655441 1122255666664333144555445667897754 2454
No 263
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=83.59 E-value=4.2 Score=21.97 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=32.7
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCC--CCCCEEEEEeCCc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGV--SGYPTLKIFRNGQ 119 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 119 (128)
.+++.+.|+.|.+.+-.+....-. +....+|.... .....+.+. ..+|++.. +|.
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~-------~~~~~~~~~~~-~~~~~~~~p~~~~vP~l~~--~~~ 58 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVP-------YEYVEEDLGNK-SELLLASNPVHKKIPVLLH--NGK 58 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCC-------CEEEEeCcccC-CHHHHHhCCCCCCCCEEEE--CCE
Confidence 356788999998887766553222 44555555433 223334444 58998863 454
No 264
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=82.44 E-value=12 Score=25.12 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=35.5
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc-----------------chhhhhhcCCC--CCCEEEEEe
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA-----------------GKETCNKHGVS--GYPTLKIFR 116 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~-----------------~~~~~~~~~v~--~~Pt~~~~~ 116 (128)
+|+|-.|..|-.....|.++..+. ++..+...+|-- +....+.++.+ .+|.+++
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~~-----~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV-- 76 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAARP-----DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV-- 76 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHHT-----SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--
T ss_pred EecCCCCCCCcHHHHHHHHhhcCC-----CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--
Confidence 688999999999999999988882 277766665532 12333344443 4799988
Q ss_pred CCcc
Q psy9104 117 NGQV 120 (128)
Q Consensus 117 ~g~~ 120 (128)
||+.
T Consensus 77 nG~~ 80 (202)
T PF06764_consen 77 NGRE 80 (202)
T ss_dssp TTTE
T ss_pred CCee
Confidence 6754
No 265
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=82.43 E-value=9.2 Score=24.04 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=40.6
Q ss_pred hccCCcEEEEEEcCCC----HHHhhh--cHHHHHHHHHhcCCCCCeEEEEEeCCccc-----------------hhhhhh
Q psy9104 47 INQHETALVMFYAPWC----GHCKKL--KPEYEKAATDVKGADPPISFVKVDCTEAG-----------------KETCNK 103 (128)
Q Consensus 47 ~~~~~~~lv~f~~~~C----~~C~~~--~~~l~~~~~~~~~~~~~v~~~~vd~~~~~-----------------~~~~~~ 103 (128)
-.+.|+.+|+.+++.. ..|++. .+.+.+..+ + ++.+-.-|+..+. ....+.
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~---~---nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~ 91 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS---Q---NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRN 91 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH---c---CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHh
Confidence 3457999999999876 455444 233333332 2 2888888877651 123456
Q ss_pred cCCCCCCEEEEEe
Q psy9104 104 HGVSGYPTLKIFR 116 (128)
Q Consensus 104 ~~v~~~Pt~~~~~ 116 (128)
++...+|.+.+..
T Consensus 92 ~~~~~fP~~avI~ 104 (136)
T cd02990 92 IKTDQLPAILIIM 104 (136)
T ss_pred cCcCCCCeEEEEE
Confidence 7899999987764
No 266
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=81.19 E-value=24 Score=27.50 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=48.2
Q ss_pred CCCceEEcChhhHHHhhccCCcEEEEEEc-CCCH-HHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhh--------
Q psy9104 31 DESSVLDLGDSDFEAVINQHETALVMFYA-PWCG-HCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET-------- 100 (128)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~lv~f~~-~~C~-~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~-------- 100 (128)
..+....+++.+.+-.-+-++|+-|.++. ..-+ .-......+.++-+++...++++.+..+|-..+ ++.
T Consensus 28 T~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~-~~~e~~~~~~~ 106 (552)
T TIGR03521 28 TEDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEE-EDEQGEEILDS 106 (552)
T ss_pred CCCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCc-chhhhhHHHHH
Confidence 35566777777766555556777776554 3323 223444556666666665556699999998765 332
Q ss_pred hhhcCCCCCC
Q psy9104 101 CNKHGVSGYP 110 (128)
Q Consensus 101 ~~~~~v~~~P 110 (128)
..++|++..+
T Consensus 107 ~~~~gi~~~~ 116 (552)
T TIGR03521 107 LAQYGIKPAN 116 (552)
T ss_pred HHHcCCCcce
Confidence 2347877665
No 267
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=80.74 E-value=5.6 Score=26.42 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=37.0
Q ss_pred CcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCc
Q psy9104 51 ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 51 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
...+-+|+.+.|+.|++..-.+.+.. ..+....+|.....+++.+......+|++.. +|.
T Consensus 8 ~~~~~Ly~~~~s~~~~rv~~~L~e~g-------l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~ 67 (211)
T PRK09481 8 RSVMTLFSGPTDIYSHQVRIVLAEKG-------VSVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--REL 67 (211)
T ss_pred CCeeEEeCCCCChhHHHHHHHHHHCC-------CCCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCE
Confidence 34466777789999999876665532 2256666776443134444444557899863 554
No 268
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=80.55 E-value=8.4 Score=24.27 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=45.1
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCC--CEEEEEeCCcc
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGY--PTLKIFRNGQV 120 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~--Pt~~~~~~g~~ 120 (128)
..+++-.+.+|...|+.|-....-|.+.... ..+.|..+..+.. ..+.+..++... =++.+.++|+.
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~-----~~i~f~~~q~e~g-~~~l~~~~l~~~~~~s~~~~~~g~~ 72 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRRDQG-----GRIRFAALQSEPG-QALLEAAGLDPEDVDSVLLVEAGQL 72 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHhccC-----CcEEEEeccCchh-hhHHhhcCCChhhhheeeEecCCce
Confidence 3467888999999999998876666553322 2378887776666 666666666543 34556667764
No 269
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=80.36 E-value=3 Score=25.23 Aligned_cols=52 Identities=15% Similarity=0.308 Sum_probs=36.6
Q ss_pred CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcC--CCCCCEEEEEe
Q psy9104 61 WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHG--VSGYPTLKIFR 116 (128)
Q Consensus 61 ~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~--v~~~Pt~~~~~ 116 (128)
.|++|..++..|.....- .. ++.+..|+..+....+....+ -++.|.+++-.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l-~~---~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDL-RE---RLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhh-hh---cccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 599999998887554433 22 277888998887445555555 47899988854
No 270
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=80.17 E-value=9.3 Score=22.19 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=20.9
Q ss_pred eEEEEEeCCccchhhhhhc--------CCCCCCEEEEEeCCcccccc
Q psy9104 86 ISFVKVDCTEAGKETCNKH--------GVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 86 v~~~~vd~~~~~~~~~~~~--------~v~~~Pt~~~~~~g~~~~~~ 124 (128)
+.+-.+|++.+ ++..+.. +-..+|.+++ +|+.+..|
T Consensus 31 I~f~eiDI~~d-~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ 74 (92)
T cd03030 31 IEFEEVDISMN-EENRQWMRENVPNENGKPLPPQIFN--GDEYCGDY 74 (92)
T ss_pred CceEEEecCCC-HHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCH
Confidence 78888898766 4433322 2345677665 55545443
No 271
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=80.16 E-value=2 Score=28.91 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=18.2
Q ss_pred hhhhhhcCCCCCCEEEEEeC
Q psy9104 98 KETCNKHGVSGYPTLKIFRN 117 (128)
Q Consensus 98 ~~~~~~~~v~~~Pt~~~~~~ 117 (128)
+.+.++|+|+.+|++++...
T Consensus 152 P~lF~~F~I~~VPafVv~C~ 171 (212)
T PRK13730 152 PTLFSQYGIRSVPALVVFCS 171 (212)
T ss_pred HHHHHhcCCccccEEEEEcC
Confidence 88999999999999999764
No 272
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=79.63 E-value=7.2 Score=23.97 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=40.7
Q ss_pred CCHHHhhhcHHHHHHHHH----hcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcccccc
Q psy9104 61 WCGHCKKLKPEYEKAATD----VKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124 (128)
Q Consensus 61 ~C~~C~~~~~~l~~~~~~----~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 124 (128)
.|.-|......+.+..+. +...+-.+.+..+..+.. +++.++ -..|++.+ ||+.+...
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~--~~~~~~--~~S~~I~i--nG~piE~~ 75 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE--EFARQP--LESPTIRI--NGRPIEDL 75 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH--HHhhcc--cCCCeeeE--CCEehhHh
Confidence 799998877766665544 555555677777777665 666666 57788888 78777443
No 273
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=79.58 E-value=6.4 Score=25.37 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=43.9
Q ss_pred ceEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
.+..++++.+.-..-+++.+||.=+|+-|..--+. ..|+.+.+.+.+.+ +.++...|+
T Consensus 9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~G--f~VLgFPcN 66 (162)
T COG0386 9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKG--FEVLGFPCN 66 (162)
T ss_pred eeeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCC--cEEEecccc
Confidence 44556666665555789999999999999888755 66788888887665 777777765
No 274
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=79.55 E-value=18 Score=25.11 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=45.6
Q ss_pred CceEEcChhhHHHhhccCCcEEEEEEcCC-CHH-HhhhcHHHHHHHHHhcCCCC-CeEEEEEeCCccchhhhhh----cC
Q psy9104 33 SSVLDLGDSDFEAVINQHETALVMFYAPW-CGH-CKKLKPEYEKAATDVKGADP-PISFVKVDCTEAGKETCNK----HG 105 (128)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~lv~f~~~~-C~~-C~~~~~~l~~~~~~~~~~~~-~v~~~~vd~~~~~~~~~~~----~~ 105 (128)
+....+++.+.+..-+-++|+-|.+|.+. =+. =....+.+.++-+++...++ ++.+-.+|.+.+ +...++ +|
T Consensus 7 ~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~-~~~~~~~~~~~G 85 (271)
T PF09822_consen 7 NKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN-PSEAEEKAKEYG 85 (271)
T ss_pred CCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC-hHHHHHHHHhcC
Confidence 34456666666655555567766655443 222 34444555555555554445 699999998766 555554 88
Q ss_pred CCCCC
Q psy9104 106 VSGYP 110 (128)
Q Consensus 106 v~~~P 110 (128)
++..+
T Consensus 86 i~~~~ 90 (271)
T PF09822_consen 86 IQPVQ 90 (271)
T ss_pred CCccc
Confidence 77644
No 275
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=77.85 E-value=3.2 Score=25.10 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=17.5
Q ss_pred EEEEEcCCCHHHhhhcHHHHHH
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKA 75 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~ 75 (128)
+..|+.+.|..|++....|++.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4578899999999887777653
No 276
>KOG0912|consensus
Probab=76.97 E-value=12 Score=27.13 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=49.4
Q ss_pred eEEcChhhHHHhhccCCcEEEEEEcCCCHHHhh-hcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCC--CCCCE
Q psy9104 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKK-LKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGV--SGYPT 111 (128)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~-~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v--~~~Pt 111 (128)
+.+++-++.++..+.+.|.+|+|+.+......+ +... +++++.+....+.++..|+..- ..-...+|- ...|.
T Consensus 212 VREiTFeN~EELtEEGlPflILf~~kdD~~s~k~F~~a---I~ReL~~e~~~in~l~ADG~~f-~hpL~HlgKs~~DLPv 287 (375)
T KOG0912|consen 212 VREITFENAEELTEEGLPFLILFRKKDDKESEKIFKNA---IARELDDETLAINFLTADGKVF-KHPLRHLGKSPDDLPV 287 (375)
T ss_pred hhhhhhccHHHHhhcCCceEEEEecCCcccHHHHHHHH---HHHHhhhhhhccceeecCccee-cchHHHhCCCcccCcE
Confidence 567777888888899999999999887665533 3333 3334333223388888898766 444555543 34665
Q ss_pred EEE
Q psy9104 112 LKI 114 (128)
Q Consensus 112 ~~~ 114 (128)
+.+
T Consensus 288 iaI 290 (375)
T KOG0912|consen 288 IAI 290 (375)
T ss_pred EEe
Confidence 544
No 277
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=76.45 E-value=2.6 Score=27.36 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=17.7
Q ss_pred hhhhhhcCCCCCCEEEEEeCCc
Q psy9104 98 KETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 98 ~~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
...+.++++.++||+++.+++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4556778999999999997654
No 278
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=76.25 E-value=6.8 Score=22.75 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=29.5
Q ss_pred CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 60 PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 60 ~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
..|++|++.+-.+.+. +..+....+|..+..+.+.+......+|++.
T Consensus 20 g~cpf~~rvrl~L~eK-------gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~ 66 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-------GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL 66 (91)
T ss_pred CCChhHHHHHHHHHHC-------CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE
Confidence 5799999887777553 2226667777666513444444456789665
No 279
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=76.22 E-value=2.7 Score=27.22 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=17.0
Q ss_pred hhhhhhcCCCCCCEEEEEeCCc
Q psy9104 98 KETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 98 ~~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
...+.++++.++||+++ +|+
T Consensus 157 ~~~a~~~gv~GvP~~vv--~g~ 176 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVV--NGK 176 (193)
T ss_dssp HHHHHHTTCSSSSEEEE--TTT
T ss_pred HHHHHHcCCcccCEEEE--CCE
Confidence 56678899999999999 666
No 280
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=74.74 E-value=9.5 Score=24.15 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=34.4
Q ss_pred cEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCC----CCCEEEE
Q psy9104 52 TALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS----GYPTLKI 114 (128)
Q Consensus 52 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~----~~Pt~~~ 114 (128)
.-++.+++|.|.=|..+...++. . + +.+-.+..++- ..+.++++|. +-=|.++
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~--G--f~Vk~~~~~d~-~alK~~~gIp~e~~SCHT~VI 82 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----N--G--FEVKVVETDDF-LALKRRLGIPYEMQSCHTAVI 82 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----C--C--cEEEEeecCcH-HHHHHhcCCChhhccccEEEE
Confidence 34778999999999877665542 1 2 55555566665 6677777764 3345555
No 281
>KOG2792|consensus
Probab=74.53 E-value=11 Score=26.46 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=36.1
Q ss_pred EEcChhhHHHhhccCCcEEEEEEcCCCHH-HhhhcHHHHHHHHHhcCCCC-C--eEEEEEeCCcc
Q psy9104 36 LDLGDSDFEAVINQHETALVMFYAPWCGH-CKKLKPEYEKAATDVKGADP-P--ISFVKVDCTEA 96 (128)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~~-~--v~~~~vd~~~~ 96 (128)
.+.++..+.+..-.++.++++|.=+.||+ |-.....+.+..++.+.... . =.|+.+|-..+
T Consensus 125 ~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD 189 (280)
T KOG2792|consen 125 VDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERD 189 (280)
T ss_pred EecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccC
Confidence 34444444444456889999999888875 66655555555555543311 1 15666776544
No 282
>KOG0855|consensus
Probab=74.48 E-value=4.1 Score=26.69 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=17.3
Q ss_pred ccCCcEEEEEE-cCCCHHHhhhcHHHHHHHHH
Q psy9104 48 NQHETALVMFY-APWCGHCKKLKPEYEKAATD 78 (128)
Q Consensus 48 ~~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~ 78 (128)
..+++++++|| +..-|.|.+..=-+.....+
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k 119 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGFRDNYEK 119 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccccccHHH
Confidence 45678888888 34455565443333333333
No 283
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=72.20 E-value=7.1 Score=26.08 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=32.3
Q ss_pred CCcEEEEEE-cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEe
Q psy9104 50 HETALVMFY-APWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92 (128)
Q Consensus 50 ~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd 92 (128)
++.++++|| ++.-+-|-.....+.+...++...+.++.-+.+|
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D 76 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD 76 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC
Confidence 478888888 6778888888888999999998877444444444
No 284
>KOG1651|consensus
Probab=72.17 E-value=13 Score=24.29 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=44.3
Q ss_pred eEEcChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
+.+++++.+.-...+++.+|+.=.|+.|..-...-..|..+.+.+...+ +.++...|.
T Consensus 19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN 76 (171)
T KOG1651|consen 19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN 76 (171)
T ss_pred EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence 4455555555445789999999999999999866679999999987655 777777765
No 285
>PRK13684 Ycf48-like protein; Provisional
Probab=70.14 E-value=6.9 Score=28.23 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=23.3
Q ss_pred cchHhHHHHHHHHHHHHHHhhhccCCCceEEcChhhHH
Q psy9104 7 SGHVLCSLIRSNLMLVLGFALVSCDESSVLDLGDSDFE 44 (128)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (128)
|++.++.+..++++++++++..++........++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 38 (334)
T PRK13684 1 MKRLLKSLKNLLLLLALLLVLSGCSTTRVPMLSSSPWQ 38 (334)
T ss_pred ChhHhHHHHHHHHHHHHHhhccccCCCCcccccCCCcE
Confidence 46777887777777777666666655333344444443
No 286
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=66.92 E-value=6.2 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=17.5
Q ss_pred EEEEcCCCHHHhhhcHHHHHH
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKA 75 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~ 75 (128)
..|+.+.|..|++....|++.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK 22 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 478899999999988877663
No 287
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=64.37 E-value=7.5 Score=23.30 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=16.5
Q ss_pred EEEEcCCCHHHhhhcHHHHH
Q psy9104 55 VMFYAPWCGHCKKLKPEYEK 74 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~ 74 (128)
..|+.+.|..|++....|++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE 21 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 57889999999998776655
No 288
>PRK10387 glutaredoxin 2; Provisional
Probab=63.50 E-value=17 Score=23.78 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=30.3
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
+++.+.||+|.+.+-.++...- .+....++..+. ....+..+...+|+++. ++|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi-------~y~~~~~~~~~~-~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNI-------PVELIVLANDDE-ATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCC-------CeEEEEcCCCch-hhHHHhcCCcccceEEe-cCCeE
Confidence 5677889999987666554322 244444544333 22222223356888854 24543
No 289
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=62.69 E-value=32 Score=20.84 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=44.1
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccch-----------hhhhhcCCCCCC-EEE-EE
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK-----------ETCNKHGVSGYP-TLK-IF 115 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~-----------~~~~~~~v~~~P-t~~-~~ 115 (128)
++++++|.==+..-+.=+.....|.+....+...+ +.++.+-.+.... .+.++|++..-. +++ +=
T Consensus 9 ~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRd--i~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiG 86 (118)
T PF13778_consen 9 KNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERD--IVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIG 86 (118)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHhhhhccccCc--eEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEe
Confidence 34444333224456666777777777555555543 6666553333213 788889876443 334 44
Q ss_pred eCCccccccccc
Q psy9104 116 RNGQVSKAKKTE 127 (128)
Q Consensus 116 ~~g~~~~~~~g~ 127 (128)
+||++..++.++
T Consensus 87 KDG~vK~r~~~p 98 (118)
T PF13778_consen 87 KDGGVKLRWPEP 98 (118)
T ss_pred CCCcEEEecCCC
Confidence 699877766553
No 290
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=61.93 E-value=23 Score=19.02 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=33.2
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEEEeCCc
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
..|+.+.++.|++..-.+....- .+....+|..+. .+.+.+......+|++.. +|.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~-------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~ 60 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKI-------PFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDF 60 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCC-------CcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCE
Confidence 36777889999877665555332 255556665332 134444455667898863 454
No 291
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=60.85 E-value=12 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=18.3
Q ss_pred EEEEEcCCCHHHhhhcHHHHHH
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKA 75 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~ 75 (128)
+..|+.+.|..|++.+.-|++.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678899999999998877663
No 292
>KOG0852|consensus
Probab=60.50 E-value=16 Score=24.14 Aligned_cols=47 Identities=11% Similarity=0.240 Sum_probs=30.6
Q ss_pred ccCCcEEEEEEc-CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 48 NQHETALVMFYA-PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 48 ~~~~~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
..++.+++.||. ++---|-...-.+...+.+++..+..|..+.+|..
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~ 78 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSV 78 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccch
Confidence 567899999984 44444544445566666777766666777777644
No 293
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=59.76 E-value=21 Score=23.67 Aligned_cols=56 Identities=11% Similarity=0.236 Sum_probs=28.6
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
+++...||+|.+.+-.+....-. +..+.++.++. ....+......+|++.. ++|..
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~-------~e~~~~~~~~~-~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIP-------VEKHVLLNDDE-ETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCC-------eEEEECCCCcc-hhHHHhcCCCCcceEEe-eCCeE
Confidence 35667799998776655443211 33333333333 22222223457898753 35543
No 294
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=59.22 E-value=20 Score=26.32 Aligned_cols=65 Identities=15% Similarity=0.334 Sum_probs=38.9
Q ss_pred CHHHhhhcHHHH----HHHHHhcCCCCCeEEEEEeCCc--cchhhhhhcCCCCCC-EEEEEeCCcccccccc
Q psy9104 62 CGHCKKLKPEYE----KAATDVKGADPPISFVKVDCTE--AGKETCNKHGVSGYP-TLKIFRNGQVSKAKKT 126 (128)
Q Consensus 62 C~~C~~~~~~l~----~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~v~~~P-t~~~~~~g~~~~~~~g 126 (128)
||.|.+-.-.+. ++.+.+.+....+.+...-|.- ....-...+|+.+-+ ...+|.+|+++....+
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~ 342 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPE 342 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeCh
Confidence 666655544444 4444455444457777777742 212334556776554 5788899999887765
No 295
>KOG1422|consensus
Probab=59.05 E-value=32 Score=23.42 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=30.9
Q ss_pred CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhh-hhcCCCCCCEEEE
Q psy9104 61 WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC-NKHGVSGYPTLKI 114 (128)
Q Consensus 61 ~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~-~~~~v~~~Pt~~~ 114 (128)
.||.||++.-.+.. + +..+....||..+. ++.. +-..-+..|-+.+
T Consensus 20 dcpf~qr~~m~L~~-----k--~~~f~vttVd~~~k-p~~f~~~sp~~~~P~l~~ 66 (221)
T KOG1422|consen 20 DCPFCQRLFMTLEL-----K--GVPFKVTTVDLSRK-PEWFLDISPGGKPPVLKF 66 (221)
T ss_pred CChhHHHHHHHHHH-----c--CCCceEEEeecCCC-cHHHHhhCCCCCCCeEEe
Confidence 69999999888772 1 12377888899877 5555 4445556666555
No 296
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.81 E-value=10 Score=25.55 Aligned_cols=23 Identities=35% Similarity=0.742 Sum_probs=20.2
Q ss_pred hhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 98 KETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 98 ~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
..+++++++.++||+++-+||+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~ 186 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTM 186 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCce
Confidence 56788999999999999998874
No 297
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=55.66 E-value=16 Score=23.13 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=15.2
Q ss_pred chhhhhhcCCCCCCEEEE
Q psy9104 97 GKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 97 ~~~~~~~~~v~~~Pt~~~ 114 (128)
.++++++++++.||.++-
T Consensus 120 gddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 120 GDDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHHhCCCcccEEee
Confidence 378999999999998763
No 298
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=55.60 E-value=63 Score=21.99 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=22.7
Q ss_pred cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 59 APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 59 ~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
...|+.|..+...+.-...-+...+ +.|+.|.-.
T Consensus 82 ~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra 115 (211)
T PF05988_consen 82 DEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA 115 (211)
T ss_pred CCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC
Confidence 4679999999888844444444333 777777643
No 299
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=55.46 E-value=32 Score=18.51 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=31.1
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc--cchhhhhhcCCCCCCEEEE
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE--AGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~v~~~Pt~~~ 114 (128)
.|+.+.|+.|.+.+-.++... ..+....+|..+ ..+++.+......+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~g-------i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNG-------LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcC-------CceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 567778888887765555432 226666677642 1144444445567899865
No 300
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=55.40 E-value=60 Score=22.35 Aligned_cols=48 Identities=17% Similarity=0.051 Sum_probs=31.1
Q ss_pred CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 60 PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 60 ~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
..||+|++..-.+.+ . +..+....+|..+..+.+.+......+|++.-
T Consensus 17 ~~cp~~~rv~i~L~e-----k--gi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~ 64 (236)
T TIGR00862 17 GNCPFSQRLFMILWL-----K--GVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY 64 (236)
T ss_pred CCCHhHHHHHHHHHH-----c--CCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE
Confidence 469999988777765 2 23377788887664244444444457898864
No 301
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=55.18 E-value=28 Score=22.37 Aligned_cols=25 Identities=4% Similarity=-0.085 Sum_probs=21.3
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhc
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVK 80 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~ 80 (128)
+|+..-||+|--..+.+.++...+.
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 5677899999999999999888764
No 302
>PRK15113 glutathione S-transferase; Provisional
Probab=54.97 E-value=57 Score=21.59 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=33.5
Q ss_pred CcEEEEEEcC--CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEE
Q psy9104 51 ETALVMFYAP--WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 51 ~~~lv~f~~~--~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~ 114 (128)
+|-+.+|+.+ .|+.|++..-.+.+.. ..+....+|..+. .+++.+..-...+|++..
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~g-------i~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~ 64 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKG-------LPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH 64 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcC-------CCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE
Confidence 4556677765 6999977766665532 2256667776432 133443333456899863
No 303
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=52.79 E-value=12 Score=22.87 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=11.7
Q ss_pred hhcCCCCCCEEEEE
Q psy9104 102 NKHGVSGYPTLKIF 115 (128)
Q Consensus 102 ~~~~v~~~Pt~~~~ 115 (128)
-.+|++++|.++|.
T Consensus 77 w~lgi~k~PAVVfD 90 (114)
T PF07511_consen 77 WSLGITKYPAVVFD 90 (114)
T ss_pred HHhCccccCEEEEc
Confidence 35799999999984
No 304
>KOG4277|consensus
Probab=51.94 E-value=91 Score=22.73 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=35.9
Q ss_pred hhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEE-eCCccchhhhhh-cCCCCCCEEEEEeC
Q psy9104 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV-DCTEAGKETCNK-HGVSGYPTLKIFRN 117 (128)
Q Consensus 40 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~v-d~~~~~~~~~~~-~~v~~~Pt~~~~~~ 117 (128)
+..+....++++|..|+|.+.-.|-- ..+.+.+.+. +..... ...+ +.+.. -..+..|.+.+|++
T Consensus 143 Q~~fehlq~Rhq~ffVf~Gtge~PL~----d~fidAASe~------~~~a~FfSase---eVaPe~~~~kempaV~VFKD 209 (468)
T KOG4277|consen 143 QIEFEHLQARHQPFFVFFGTGEGPLF----DAFIDAASEK------FSVARFFSASE---EVAPEENDAKEMPAVAVFKD 209 (468)
T ss_pred HHHHHHHhhccCceEEEEeCCCCcHH----HHHHHHhhhh------eeeeeeecccc---ccCCcccchhhccceEEEcc
Confidence 34455666999999999997654432 2222222221 333322 2222 23322 23456688877776
Q ss_pred Ccc
Q psy9104 118 GQV 120 (128)
Q Consensus 118 g~~ 120 (128)
.+.
T Consensus 210 etf 212 (468)
T KOG4277|consen 210 ETF 212 (468)
T ss_pred cee
Confidence 643
No 305
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=51.52 E-value=27 Score=18.08 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=9.0
Q ss_pred ccCCcEEEEEEcC
Q psy9104 48 NQHETALVMFYAP 60 (128)
Q Consensus 48 ~~~~~~lv~f~~~ 60 (128)
.....+.|.|..+
T Consensus 37 ~edQdv~ISf~~~ 49 (52)
T PF00879_consen 37 AEDQDVSISFAGD 49 (52)
T ss_pred ccCCcEEEEecCC
Confidence 4567778888754
No 306
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=51.19 E-value=99 Score=22.94 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=52.4
Q ss_pred ceEEcChhhHHHhh--ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhh----hhcCCC
Q psy9104 34 SVLDLGDSDFEAVI--NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC----NKHGVS 107 (128)
Q Consensus 34 ~~~~~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~----~~~~v~ 107 (128)
....++.+++-+.. .-++..+|.|....-|.-.++...+.++++.... ++++.++.||-++- +-+. +.|+|.
T Consensus 250 tlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~-np~LsivwIDPD~f-Pllv~yWE~tF~Id 327 (383)
T PF01216_consen 250 TLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTD-NPDLSIVWIDPDDF-PLLVPYWEKTFGID 327 (383)
T ss_dssp SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT--TT--EEEE-GGG--HHHHHHHHHHHTT-
T ss_pred HhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCc-CCceeEEEECCCCC-chhHHHHHhhcCcc
Confidence 35667777755444 4578889999999999999999999999988655 47899999999887 5443 455664
Q ss_pred -CCCEEEEEe
Q psy9104 108 -GYPTLKIFR 116 (128)
Q Consensus 108 -~~Pt~~~~~ 116 (128)
.-|.+-+.+
T Consensus 328 l~~PqIGvVn 337 (383)
T PF01216_consen 328 LSRPQIGVVN 337 (383)
T ss_dssp TTS-EEEEEE
T ss_pred ccCCceeEEe
Confidence 348887664
No 307
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=51.12 E-value=19 Score=23.60 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=26.7
Q ss_pred ccCCCceEEcChhhHHHhh--ccCCcEEEEEEcCCC
Q psy9104 29 SCDESSVLDLGDSDFEAVI--NQHETALVMFYAPWC 62 (128)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~--~~~~~~lv~f~~~~C 62 (128)
+....+...++++++-+.+ ..+.|++|+|-...-
T Consensus 29 S~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~ 64 (180)
T PF14097_consen 29 SQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGF 64 (180)
T ss_pred eccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 3456677889999988887 778999999986543
No 308
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=51.08 E-value=20 Score=21.52 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.8
Q ss_pred hhhhhhcCCCCCCEEEE
Q psy9104 98 KETCNKHGVSGYPTLKI 114 (128)
Q Consensus 98 ~~~~~~~~v~~~Pt~~~ 114 (128)
++++++++++.||.++-
T Consensus 83 ddLa~rL~l~hYPvLit 99 (105)
T TIGR03765 83 DDLAERLGLRHYPVLIT 99 (105)
T ss_pred HHHHHHhCCCcccEEEe
Confidence 78899999999998764
No 309
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=50.88 E-value=13 Score=27.11 Aligned_cols=66 Identities=17% Similarity=0.399 Sum_probs=37.2
Q ss_pred CHHHhhhcHHHHHHHHH----hcCCCCCeEEEEEeCCccchhhh--hhcCCC--CCCEEEEEeCCccccccccc
Q psy9104 62 CGHCKKLKPEYEKAATD----VKGADPPISFVKVDCTEAGKETC--NKHGVS--GYPTLKIFRNGQVSKAKKTE 127 (128)
Q Consensus 62 C~~C~~~~~~l~~~~~~----~~~~~~~v~~~~vd~~~~~~~~~--~~~~v~--~~Pt~~~~~~g~~~~~~~g~ 127 (128)
||.|-+..-.+.+..++ +......+.+..+-|-=|.+.-+ ..+++. +.|...+|.+|+.+.+..++
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~ 337 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEE 337 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChh
Confidence 99997776555544433 33332334444444432222222 234554 36889999999988776654
No 310
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.52 E-value=34 Score=23.52 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=23.7
Q ss_pred cEEEE-EEcCCCHHHhhhcHHHHHHHHHhcC
Q psy9104 52 TALVM-FYAPWCGHCKKLKPEYEKAATDVKG 81 (128)
Q Consensus 52 ~~lv~-f~~~~C~~C~~~~~~l~~~~~~~~~ 81 (128)
++-|. |...-||.|-.-++.|++....+..
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 34444 4556899999999999999998874
No 311
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=50.51 E-value=4.3 Score=24.02 Aligned_cols=60 Identities=15% Similarity=0.318 Sum_probs=33.3
Q ss_pred EEcCCCHHHhhhc---H----HHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCC-CCEEEEEe-CCccccc
Q psy9104 57 FYAPWCGHCKKLK---P----EYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG-YPTLKIFR-NGQVSKA 123 (128)
Q Consensus 57 f~~~~C~~C~~~~---~----~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~-~Pt~~~~~-~g~~~~~ 123 (128)
|..+.||.|..+. . ..+.....+.+ + ++.+|-++ ..+++..+++. +|-.+-.+ +|+....
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G----~-i~i~dP~~--SwVAk~l~i~~~~pG~YAi~V~g~lp~~ 86 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEG----I-IALMDPEK--SWVARWQRIDKFVPGIYAISVSGRLPED 86 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcce----E-EEEECCch--hHHHHHhCCCCCCCCeEEEEecCcCCHH
Confidence 7788999996321 1 11122333333 2 22234333 47888888864 57776665 7765443
No 312
>PRK10853 putative reductase; Provisional
Probab=50.45 E-value=19 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=17.2
Q ss_pred EEEEEcCCCHHHhhhcHHHHH
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEK 74 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~ 74 (128)
+..|+.+.|..|++...-|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 457888999999998877765
No 313
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=61 Score=22.25 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=35.4
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
.|..-.|..|-.....+++ ++...++.+. |.... ..+.-+-++-++|.+++ ||+.
T Consensus 15 I~~HktC~ssy~Lf~~L~n-----kgll~~Vkii--~a~~p-~f~~~~~~V~SvP~Vf~--DGel 69 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLEN-----KGLLGKVKII--DAELP-PFLAFEKGVISVPSVFI--DGEL 69 (265)
T ss_pred EEEecchHHHHHHHHHHHh-----cCCCCCceEE--EcCCC-hHHHhhcceeecceEEE--cCeE
Confidence 4556678888665555433 2223447774 66666 66666667889999877 6764
No 314
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=48.96 E-value=15 Score=22.37 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=11.2
Q ss_pred hcCCCCCCEEEEE
Q psy9104 103 KHGVSGYPTLKIF 115 (128)
Q Consensus 103 ~~~v~~~Pt~~~~ 115 (128)
.||++++|.+++-
T Consensus 79 ~lGi~k~PAVV~D 91 (113)
T TIGR03757 79 QLGVTKIPAVVVD 91 (113)
T ss_pred HcCCccCCEEEEc
Confidence 5799999999983
No 315
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=47.97 E-value=29 Score=21.41 Aligned_cols=23 Identities=13% Similarity=0.453 Sum_probs=18.3
Q ss_pred EEEEEEcCCCHHHhhhcHHHHHH
Q psy9104 53 ALVMFYAPWCGHCKKLKPEYEKA 75 (128)
Q Consensus 53 ~lv~f~~~~C~~C~~~~~~l~~~ 75 (128)
.+..|+-+.|..|++...-|++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35678889999999988877663
No 316
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=47.94 E-value=21 Score=20.36 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=17.5
Q ss_pred hhhhhcCCCCCCEEEEEeCCcccc
Q psy9104 99 ETCNKHGVSGYPTLKIFRNGQVSK 122 (128)
Q Consensus 99 ~~~~~~~v~~~Pt~~~~~~g~~~~ 122 (128)
.-++.+++...++++++.||+++.
T Consensus 29 K~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 29 KALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHHhCCCCceEEEEecCCCEEc
Confidence 345667787667888888998773
No 317
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=47.70 E-value=83 Score=21.96 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=25.4
Q ss_pred CcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 51 ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 51 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
.-|+=+|++..|..|-.....|.+++++ +++.-....++
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-----~~vlALsyhVd 80 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-----PGVLALSYHVD 80 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-----CCEEEEEEeec
Confidence 4455568899999997777666666654 22555555444
No 318
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=47.49 E-value=58 Score=19.22 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=41.1
Q ss_pred ChhhHHHhhccC-CcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEEe
Q psy9104 39 GDSDFEAVINQH-ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFR 116 (128)
Q Consensus 39 ~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~ 116 (128)
+.++++..+... ..++|-|+.+--. .....+.+.++..++. +.|..... ..+.+++++. .|.+++|+
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd---~~F~~t~~----~~~~~~~~~~-~~~vvl~r 74 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRED---YKFHHTFD----SEIFKSLKVS-PGQLVVFQ 74 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccC---CEEEEECh----HHHHHhcCCC-CCceEEEC
Confidence 345566666555 6777767665433 3445677777777654 77754442 4566777775 56666664
No 319
>KOG0868|consensus
Probab=46.98 E-value=6 Score=26.25 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=35.6
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc----chhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA----GKETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~----~~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
..||++--+|.+.|.+-.+..-.+..+ +.....||.-+. +.++.+--....+|++++ +|..
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~i---------DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~t 67 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGI---------DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLT 67 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCC---------CcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEE
Confidence 357888888888888766553333222 245555665433 123333334567999987 5543
No 320
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=46.53 E-value=61 Score=19.19 Aligned_cols=21 Identities=14% Similarity=0.630 Sum_probs=15.7
Q ss_pred EEEEEcCCCHHHhhh-cHHHHH
Q psy9104 54 LVMFYAPWCGHCKKL-KPEYEK 74 (128)
Q Consensus 54 lv~f~~~~C~~C~~~-~~~l~~ 74 (128)
|-.||.+-||+|+++ ...|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 557889999999987 444554
No 321
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=45.18 E-value=26 Score=19.90 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=17.6
Q ss_pred hhhhhcCCCCCCEEEEEeCCcccc
Q psy9104 99 ETCNKHGVSGYPTLKIFRNGQVSK 122 (128)
Q Consensus 99 ~~~~~~~v~~~Pt~~~~~~g~~~~ 122 (128)
..++.+++...+++++..||.++.
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEc
Confidence 446678886667788888998773
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=44.34 E-value=1.1e+02 Score=21.25 Aligned_cols=67 Identities=6% Similarity=0.075 Sum_probs=42.9
Q ss_pred CCcEEEEEEcCCCHHH-----------------hhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc----c-hhhhhhcCCC
Q psy9104 50 HETALVMFYAPWCGHC-----------------KKLKPEYEKAATDVKGADPPISFVKVDCTEA----G-KETCNKHGVS 107 (128)
Q Consensus 50 ~~~~lv~f~~~~C~~C-----------------~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~----~-~~~~~~~~v~ 107 (128)
+.++-|.+++|.|++- ......++++...+-.....+.++.+|+... . ..+++.+...
T Consensus 112 ~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~ 191 (240)
T smart00053 112 PVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ 191 (240)
T ss_pred CcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc
Confidence 4677888888888543 2233445555555433223478888876432 1 3678888888
Q ss_pred CCCEEEEEe
Q psy9104 108 GYPTLKIFR 116 (128)
Q Consensus 108 ~~Pt~~~~~ 116 (128)
+.|++.+.+
T Consensus 192 ~~rti~ViT 200 (240)
T smart00053 192 GERTIGVIT 200 (240)
T ss_pred CCcEEEEEE
Confidence 999997775
No 323
>KOG0911|consensus
Probab=44.18 E-value=72 Score=21.97 Aligned_cols=63 Identities=16% Similarity=0.383 Sum_probs=40.6
Q ss_pred cCCcEEEEEE----cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcC-CCCCCEEE-EEeCCccc
Q psy9104 49 QHETALVMFY----APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHG-VSGYPTLK-IFRNGQVS 121 (128)
Q Consensus 49 ~~~~~lv~f~----~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~-v~~~Pt~~-~~~~g~~~ 121 (128)
+.++++++-= .|-|...++....+.... +.+...|+..+ .++.+..+ .+.+||+- +|-+|+-+
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~n---------V~~~~fdIL~D-eelRqglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQSHN---------VNYTIFDVLTD-EELRQGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHHcC---------CCeeEEeccCC-HHHHHHhhhhcCCCCccceeECCEec
Confidence 3445554432 356777777766665422 55777899888 88887775 46789975 45588643
No 324
>PRK10026 arsenate reductase; Provisional
Probab=43.72 E-value=33 Score=21.70 Aligned_cols=22 Identities=14% Similarity=0.440 Sum_probs=17.9
Q ss_pred EEEEEcCCCHHHhhhcHHHHHH
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKA 75 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~ 75 (128)
+..|+-+.|..|++...-|++.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5578899999999988777664
No 325
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=43.12 E-value=51 Score=17.25 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=27.0
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEE
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~ 114 (128)
.|+...|+.|.+.+-.+... +..+....+|..+. .+.+.+......+|++..
T Consensus 3 L~~~~~~~~~~~~~~~l~~~-------gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03042 3 LYSYFRSSASYRVRIALNLK-------GLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI 57 (73)
T ss_pred EecCCCCcchHHHHHHHHHc-------CCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE
Confidence 44455566666554444332 22255666665321 134444445567898853
No 326
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=42.75 E-value=54 Score=17.50 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=27.5
Q ss_pred EEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 55 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
.++|.+-|+.|.+.+-.+.+..- .+....++.+...+++........+|++..
T Consensus 3 ~Ly~~~~~~~~~~v~~~L~~~~i-------~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~ 55 (73)
T cd03076 3 TLTYFPVRGRAEAIRLLLADQGI-------SWEEERVTYEEWQESLKPKMLFGQLPCFKD 55 (73)
T ss_pred EEEEeCCcchHHHHHHHHHHcCC-------CCEEEEecHHHhhhhhhccCCCCCCCEEEE
Confidence 34566678888766555554322 255556654332122222222356898853
No 327
>PLN02473 glutathione S-transferase
Probab=42.71 E-value=72 Score=20.93 Aligned_cols=57 Identities=7% Similarity=0.089 Sum_probs=33.4
Q ss_pred EEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEEEeCCc
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKIFRNGQ 119 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~~~~g~ 119 (128)
+-+++.+.++.|++..-.+.+.. ..+..+.+|..+. .++..+......+|++. .+|.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~g-------i~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~--~~g~ 62 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKG-------IEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE--DGDL 62 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcC-------CCceEEEecCcccccCCHHHHhhCCCCCCCeEE--ECCE
Confidence 44566677888887766665532 2255666776531 14444444456789985 3554
No 328
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=42.70 E-value=53 Score=22.95 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEE
Q psy9104 61 WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 61 ~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 114 (128)
+||+|++..-.+++..- .+.+..+|..+..+.+.+......+|++..
T Consensus 72 ~cp~s~rV~i~L~ekgi-------~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHL-------PYDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCcHHHHHHHHHHHcCC-------CCEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 49999988777755332 256667777654133433333447899864
No 329
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=42.31 E-value=49 Score=21.99 Aligned_cols=69 Identities=12% Similarity=0.270 Sum_probs=40.4
Q ss_pred cEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhc----C-CCCCCEEEEEe-CCccccccc
Q psy9104 52 TALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKH----G-VSGYPTLKIFR-NGQVSKAKK 125 (128)
Q Consensus 52 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~----~-v~~~Pt~~~~~-~g~~~~~~~ 125 (128)
+=-|++++.- +.-..|+..+..+.... .++..+.|.|... +.+.+.+ . ++..|.-.+.. ||+++..-.
T Consensus 8 ~DAiEIHT~~-gr~~~F~~lw~~l~~~~----~~Lk~lAiSc~~~-~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDI 81 (183)
T PF12617_consen 8 VDAIEIHTQV-GRLAAFERLWQALAPSV----PQLKLLAISCPDG-EGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDI 81 (183)
T ss_pred CCEEEEecCC-CccHHHHHHHHHHHhhh----hhccEEEEECCCC-HHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCC
Confidence 3344555432 23344555555555443 3478888999876 6665543 2 45577777776 998766544
Q ss_pred c
Q psy9104 126 T 126 (128)
Q Consensus 126 g 126 (128)
|
T Consensus 82 G 82 (183)
T PF12617_consen 82 G 82 (183)
T ss_pred C
Confidence 4
No 330
>PLN02378 glutathione S-transferase DHAR1
Probab=40.88 E-value=56 Score=21.71 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=27.7
Q ss_pred CCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEE
Q psy9104 60 PWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113 (128)
Q Consensus 60 ~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~ 113 (128)
.+||+|++..-.+++.. ..+....+|.....+.+.+-.....+|++.
T Consensus 18 ~~~p~~~rv~~~L~e~g-------l~~e~~~v~~~~~~~~~l~inP~G~VPvL~ 64 (213)
T PLN02378 18 GDCPFSQRALLTLEEKS-------LTYKIHLINLSDKPQWFLDISPQGKVPVLK 64 (213)
T ss_pred CCCcchHHHHHHHHHcC-------CCCeEEEeCcccCCHHHHHhCCCCCCCEEE
Confidence 34999998866664432 225666777654413344433344689885
No 331
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=40.65 E-value=33 Score=19.39 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=17.7
Q ss_pred hhhhhhcCCC-CCCEEEEEeCCcccc
Q psy9104 98 KETCNKHGVS-GYPTLKIFRNGQVSK 122 (128)
Q Consensus 98 ~~~~~~~~v~-~~Pt~~~~~~g~~~~ 122 (128)
...++.+++. ..++++++.||+++.
T Consensus 28 ~K~~~~l~~~~~~~~lvL~eDGT~Vd 53 (78)
T cd06539 28 SKTLDALVITSGLVTLVLEEDGTVVD 53 (78)
T ss_pred HHHHHHhCCCCCCcEEEEeCCCCEEc
Confidence 3446677874 467788888998873
No 332
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=39.61 E-value=28 Score=20.57 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=19.5
Q ss_pred EEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc
Q psy9104 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96 (128)
Q Consensus 57 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~ 96 (128)
|+.+.|..|++...-|++.. +.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~g---------i~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENG---------IEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT-----------EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHcC---------CCeEeehhhhC
Confidence 67789999999988776622 55556777654
No 333
>PF10185 Mesd: Chaperone for wingless signalling and trafficking of LDL receptor; InterPro: IPR019330 Mesoderm development candidate 2 (also known as LDLR chaperone MESD)represents a set of highly conserved proteins found from nematodes to humans. It is a chaperone that specifically assists with the folding of beta-propeller/EGF modules within the family of low-density lipoprotein receptors (LDLRs). It also acts as a modulator of the Wnt pathway, since some LDLRs are coreceptors for the canonical Wnt pathway and is essential for specification of embryonic polarity and mesoderm induction []. The final C-terminal residues, KEDL, are the endoplasmic reticulum retention sequence as it is an ER protein specifically required for the intracellular trafficking of members of the low-density lipoprotein family of receptors (LDLRs) []. The N- and C-terminal sequences are predicted to adopt a random coil conformation, with the exception of an isolated predicted helix within the N-terminal region, The central folded domain flanked by natively unstructured regions is the necessary structure for facilitating maturation of LRP6 (Low-Density Lipoprotein Receptor-Related Protein 6 Maturation) []. ; PDB: 2RQM_A 2I9S_A 3OFH_A 2KGL_A 2RQK_A 2KMI_A 3OFG_A 3OFE_B 3OFF_A.
Probab=39.31 E-value=1.1e+02 Score=19.90 Aligned_cols=57 Identities=7% Similarity=-0.003 Sum_probs=34.5
Q ss_pred hhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc
Q psy9104 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96 (128)
Q Consensus 40 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~ 96 (128)
++++..+.+++++++++..-..-|.=.........+...+.+.+-.+.++.||.+..
T Consensus 52 pe~~lk~sKKGktlm~FV~~~~~ps~~e~e~i~~~Wq~~L~N~hi~v~ry~Id~~r~ 108 (158)
T PF10185_consen 52 PESLLKMSKKGKTLMMFVKVSGDPSREETEEITKLWQTSLRNNHIEVQRYPIDDNRA 108 (158)
T ss_dssp -HHHHHHH-SSSEEEEEEEESSSTTHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEE
T ss_pred HHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCeeEEEEEEcCCEE
Confidence 344444446788877776665555444555555566667766666788888886543
No 334
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=38.43 E-value=57 Score=21.16 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=26.2
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCC-CCCeEEEEEe
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGA-DPPISFVKVD 92 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~v~~~~vd 92 (128)
.|+..-||+|-...+.+.++.+.+... ..++.+..+.
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~ 40 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFE 40 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeee
Confidence 567788999999999999999887421 1234444443
No 335
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=38.32 E-value=65 Score=17.11 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=27.2
Q ss_pred CCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC----ccchhhhhhcCCCCCCEEEEEeCCccc
Q psy9104 61 WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT----EAGKETCNKHGVSGYPTLKIFRNGQVS 121 (128)
Q Consensus 61 ~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~----~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 121 (128)
.||+|++..-.+....-. .....++.. ...+.+.+--.-..+|++..- +|+.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~-------~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi 57 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLP-------YEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVI 57 (70)
T ss_dssp T-HHHHHHHHHHHHHTGT-------CEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEE
T ss_pred CchHhHHHHHHHHHhCCC-------CEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEe
Confidence 489998887776665433 223334321 110334444444578998873 56543
No 336
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=38.08 E-value=1.3e+02 Score=20.39 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=26.9
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~ 93 (128)
.....-+.+|..+.|+.|......+.. . +..+-++.|+.
T Consensus 106 ~~~~~rlalFvkd~C~~C~~~~~~l~a-----~--~~~~Diylvgs 144 (200)
T TIGR03759 106 LQGGGRLALFVKDDCVACDARVQRLLA-----D--NAPLDLYLVGS 144 (200)
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHhc-----C--CCceeEEEecC
Confidence 445667888888999999877666632 1 23466777773
No 337
>PRK13617 psbV cytochrome c-550; Provisional
Probab=38.02 E-value=22 Score=23.24 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=12.9
Q ss_pred cCCCHHHh---------hhcHHHHHHH
Q psy9104 59 APWCGHCK---------KLKPEYEKAA 76 (128)
Q Consensus 59 ~~~C~~C~---------~~~~~l~~~~ 76 (128)
...|..|+ ..-+.++.++
T Consensus 67 ~~~C~~CH~~g~T~~n~~vg~dL~~L~ 93 (170)
T PRK13617 67 NTSCGTCHAGGITKTNQNVGLDPETLA 93 (170)
T ss_pred HcchhhhccCCCcCCCCCcCCCHHHHh
Confidence 78899999 4556665553
No 338
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=36.07 E-value=32 Score=20.53 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=13.1
Q ss_pred cCCCHHHhhhcHHHHHH
Q psy9104 59 APWCGHCKKLKPEYEKA 75 (128)
Q Consensus 59 ~~~C~~C~~~~~~l~~~ 75 (128)
++.||.|.+-+.++.+.
T Consensus 31 ~s~Cp~C~kkraeLa~~ 47 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQS 47 (104)
T ss_pred cccChHHHHHHHHHHHH
Confidence 46799999887777654
No 339
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=35.44 E-value=85 Score=23.09 Aligned_cols=65 Identities=18% Similarity=0.403 Sum_probs=37.4
Q ss_pred CHHHhhhcHHHHHHHHH----hcCCCCCeEEEEEeCCccchhhhh--hcCCCC--CCEEEEEeCCcccccccc
Q psy9104 62 CGHCKKLKPEYEKAATD----VKGADPPISFVKVDCTEAGKETCN--KHGVSG--YPTLKIFRNGQVSKAKKT 126 (128)
Q Consensus 62 C~~C~~~~~~l~~~~~~----~~~~~~~v~~~~vd~~~~~~~~~~--~~~v~~--~Pt~~~~~~g~~~~~~~g 126 (128)
||.|-+..-.+.++.++ +......+.+..+-|.=|.+.-++ .+++.+ .-..++|++|+++....+
T Consensus 262 CPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 262 CPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH
Confidence 77776665555544444 333333466666666544333333 345553 335788999998877654
No 340
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=35.40 E-value=1.1e+02 Score=20.27 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=26.0
Q ss_pred EEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeC
Q psy9104 53 ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93 (128)
Q Consensus 53 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~ 93 (128)
.+=+|+..-||+|---...++++.+... ..+.+..+..
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~---v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWN---VDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhC---CeEEEEeeeh
Confidence 3446777899999988888888776543 2255555543
No 341
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=35.19 E-value=41 Score=17.79 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=27.9
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccc-hhhhhhcCCCCCCEEEE
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG-KETCNKHGVSGYPTLKI 114 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~v~~~Pt~~~ 114 (128)
+++.+.|+.|++.+-.+++..- .+....+|..+.. ..+.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi-------~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 55 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGV-------EYEDVRITYEEWPELDLKPTLPFGQLPVLEI 55 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCC-------CcEEEEeCHHHhhhhhhccCCcCCCCCEEEE
Confidence 4556778888877655554322 2445555543320 22333344557898863
No 342
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=35.11 E-value=16 Score=23.15 Aligned_cols=14 Identities=29% Similarity=0.722 Sum_probs=11.6
Q ss_pred CCHHHhhhcHHHHH
Q psy9104 61 WCGHCKKLKPEYEK 74 (128)
Q Consensus 61 ~C~~C~~~~~~l~~ 74 (128)
-||+|++..|.|.-
T Consensus 11 ~CPhCRQ~ipALtL 24 (163)
T TIGR02652 11 RCPHCRQNIPALTL 24 (163)
T ss_pred cCchhhcccchhee
Confidence 69999999887754
No 343
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=34.97 E-value=15 Score=23.15 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=11.5
Q ss_pred CCHHHhhhcHHHHH
Q psy9104 61 WCGHCKKLKPEYEK 74 (128)
Q Consensus 61 ~C~~C~~~~~~l~~ 74 (128)
-||+|++..|.|.-
T Consensus 8 ~CPhCRq~ipALtL 21 (161)
T PF09654_consen 8 QCPHCRQTIPALTL 21 (161)
T ss_pred cCchhhcccchhee
Confidence 69999999887754
No 344
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=34.17 E-value=77 Score=18.72 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=20.1
Q ss_pred EEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc
Q psy9104 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96 (128)
Q Consensus 57 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~ 96 (128)
.|.+.+....+++..=+++...+... ++.|-.+|+..+
T Consensus 5 vy~ss~sg~~~ikk~q~~v~~iL~a~--kI~fe~vDIa~~ 42 (99)
T PF04908_consen 5 VYISSISGSREIKKRQQRVLMILEAK--KIPFEEVDIAMD 42 (99)
T ss_dssp EEE-SS-SSHHHHHHHHHHHHHHHHT--T--EEEEETTT-
T ss_pred EEEecccCCHHHHHHHHHHHHHHHHc--CCCcEEEeCcCC
Confidence 33344555556656555555555533 388999999866
No 345
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.89 E-value=54 Score=21.15 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=18.7
Q ss_pred hhHHHhh-ccCCcEEEEEEcCCCHHH
Q psy9104 41 SDFEAVI-NQHETALVMFYAPWCGHC 65 (128)
Q Consensus 41 ~~~~~~~-~~~~~~lv~f~~~~C~~C 65 (128)
++....+ +.++|+++.|.+-|--+-
T Consensus 123 ~~lr~~I~e~dkp~LilfGTGwGlpd 148 (190)
T COG4752 123 SWLRNEIQERDKPWLILFGTGWGLPD 148 (190)
T ss_pred HHHHHHHhhcCCcEEEEecCCCCCCH
Confidence 4444444 889999999999997543
No 346
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=32.81 E-value=50 Score=21.98 Aligned_cols=25 Identities=12% Similarity=0.492 Sum_probs=14.0
Q ss_pred cChhhHHHhh-ccCCcEEEEEEcCCC
Q psy9104 38 LGDSDFEAVI-NQHETALVMFYAPWC 62 (128)
Q Consensus 38 ~~~~~~~~~~-~~~~~~lv~f~~~~C 62 (128)
++-.++.+.+ +.++|+++.|.+-|-
T Consensus 119 is~~~lr~~l~~~~~P~LllFGTGwG 144 (185)
T PF09936_consen 119 ISYAELRRMLEEEDRPVLLLFGTGWG 144 (185)
T ss_dssp B-HHHHHHHHHH--S-EEEEE--TT-
T ss_pred cCHHHHHHHHhccCCeEEEEecCCCC
Confidence 4456666666 789999999999995
No 347
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=32.75 E-value=35 Score=22.99 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=17.7
Q ss_pred hhhhhhcCCCCCCEEEEEeCCcc
Q psy9104 98 KETCNKHGVSGYPTLKIFRNGQV 120 (128)
Q Consensus 98 ~~~~~~~~v~~~Pt~~~~~~g~~ 120 (128)
..+.++|+++.+|+++- .+|+.
T Consensus 175 g~Lt~rF~I~~VPavV~-q~g~~ 196 (202)
T TIGR02743 175 GKLTQKFGIKHVPARVS-QEGLR 196 (202)
T ss_pred chHhhccCceeeceEEE-ecCCE
Confidence 57899999999999886 45553
No 348
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.45 E-value=72 Score=20.62 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=25.6
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcC
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKG 81 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~ 81 (128)
..+.++..|=+-.-+-|-..-..+.+.+.++.+
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~ 76 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN 76 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCC
Confidence 344555556688889999999999999988775
No 349
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.73 E-value=22 Score=18.86 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=8.8
Q ss_pred CCCHHHhhhcHH
Q psy9104 60 PWCGHCKKLKPE 71 (128)
Q Consensus 60 ~~C~~C~~~~~~ 71 (128)
|-||.|+++-..
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 569999877543
No 350
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=30.37 E-value=33 Score=23.30 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=18.0
Q ss_pred hhhhhhcCCCCCCEEEEE-eCCcc
Q psy9104 98 KETCNKHGVSGYPTLKIF-RNGQV 120 (128)
Q Consensus 98 ~~~~~~~~v~~~Pt~~~~-~~g~~ 120 (128)
..+.++|+++.+|+++-- .+|+.
T Consensus 173 G~Lt~rF~I~~VPAvV~~~q~G~~ 196 (209)
T PRK13738 173 GVLCQRFGIDQVPARVSAVPGGRF 196 (209)
T ss_pred chHHHhcCCeeeceEEEEcCCCCE
Confidence 468999999999998862 45653
No 351
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=29.91 E-value=90 Score=19.89 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=28.1
Q ss_pred HHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCC--CCCeEEEEEe
Q psy9104 43 FEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGA--DPPISFVKVD 92 (128)
Q Consensus 43 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~v~~~~vd 92 (128)
+...+.+.+|-+|-..+ +...|+++...+.++.++.... ...+.++.+|
T Consensus 55 l~~~i~~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~ 105 (150)
T PF14639_consen 55 LKKFIEKHKPDVIAVGG-NSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVD 105 (150)
T ss_dssp HHHHHHHH--SEEEE---SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE--
T ss_pred HHHHHHHcCCeEEEEcC-CChhHHHHHHHHHHHHHHhhhcccCCCceEEEEC
Confidence 44456677777777754 7899999999998887776521 1235555555
No 352
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=29.77 E-value=96 Score=16.94 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=26.4
Q ss_pred cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhc---CCCCCCEEEE
Q psy9104 59 APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKH---GVSGYPTLKI 114 (128)
Q Consensus 59 ~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~---~v~~~Pt~~~ 114 (128)
.+||+.|.+.+-.+....-. +....++..+. ......+ ....+|++..
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~-------~~~~~~~~~~~-~~~~~~~~~~p~~~vP~L~~ 63 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE-------YKTVPVEFPDI-PPILGELTSGGFYTVPVIVD 63 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC-------CeEEEecCCCc-ccccccccCCCCceeCeEEE
Confidence 36889998887766553222 44555564433 2222222 2356788753
No 353
>KOG1364|consensus
Probab=29.70 E-value=88 Score=23.06 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=28.6
Q ss_pred eEEEEEeCCccchhhhhhcCCCCCCEEEEEe--CCcccccccc
Q psy9104 86 ISFVKVDCTEAGKETCNKHGVSGYPTLKIFR--NGQVSKAKKT 126 (128)
Q Consensus 86 v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g 126 (128)
+..+..|..+. ..+...|.+..+|.+.+++ -|+.+.+..|
T Consensus 133 wllV~~Dtseg-~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~ 174 (356)
T KOG1364|consen 133 WLLVLDDTSEG-QPFSAFYHISSLPHIAIIDPITGERVKRWSG 174 (356)
T ss_pred EEEEeeccCCC-CchhhheeccCCceEEEECCchhhhhhhhcc
Confidence 44444444455 7888999999999888876 6777766554
No 354
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=29.55 E-value=14 Score=26.15 Aligned_cols=8 Identities=38% Similarity=1.016 Sum_probs=5.9
Q ss_pred CCCHHHhh
Q psy9104 60 PWCGHCKK 67 (128)
Q Consensus 60 ~~C~~C~~ 67 (128)
-|||.||.
T Consensus 266 ~~CP~CQ~ 273 (273)
T COG0266 266 FYCPVCQK 273 (273)
T ss_pred EeCCCCCC
Confidence 48888874
No 355
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=29.42 E-value=11 Score=26.38 Aligned_cols=11 Identities=36% Similarity=1.219 Sum_probs=8.6
Q ss_pred CCCHHHhhhcH
Q psy9104 60 PWCGHCKKLKP 70 (128)
Q Consensus 60 ~~C~~C~~~~~ 70 (128)
-|||.||...|
T Consensus 256 y~Cp~CQ~~~~ 266 (269)
T PRK14811 256 HFCPQCQPLRP 266 (269)
T ss_pred EECCCCcCCCC
Confidence 58999988755
No 356
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=29.05 E-value=1.6e+02 Score=18.88 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=34.6
Q ss_pred cCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
.++-+.+.++++..+.|.-+...++..++.+.+. ++.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~--~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFEL--DVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEE--EEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCC--CeEEEEeccc
Confidence 4567788889999899999999999999998762 2666666554
No 357
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=28.29 E-value=68 Score=18.13 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=15.3
Q ss_pred hhhhhcCCC-CCCEEEEEeCCccc
Q psy9104 99 ETCNKHGVS-GYPTLKIFRNGQVS 121 (128)
Q Consensus 99 ~~~~~~~v~-~~Pt~~~~~~g~~~ 121 (128)
..++++++. .-+++++..||.++
T Consensus 29 K~~~~l~l~~~~~~lvL~eDGTeV 52 (78)
T cd01615 29 KACEKLKLPSAPVTLVLEEDGTEV 52 (78)
T ss_pred HHHHHcCCCCCCeEEEEeCCCcEE
Confidence 446677774 34456677788877
No 358
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=27.76 E-value=52 Score=18.31 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=12.2
Q ss_pred CCCEEEEEeCCcccc
Q psy9104 108 GYPTLKIFRNGQVSK 122 (128)
Q Consensus 108 ~~Pt~~~~~~g~~~~ 122 (128)
..|++-.|+||+++.
T Consensus 11 P~Pti~W~kng~~l~ 25 (79)
T cd05855 11 PKPTLQWFHEGAILN 25 (79)
T ss_pred CCCceEEEECCEECC
Confidence 467899999998764
No 359
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=27.51 E-value=42 Score=18.86 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=10.3
Q ss_pred hcCCCCCCEEEEEe-CCcccccc
Q psy9104 103 KHGVSGYPTLKIFR-NGQVSKAK 124 (128)
Q Consensus 103 ~~~v~~~Pt~~~~~-~g~~~~~~ 124 (128)
+|-.-.-|++++++ +|+++.+.
T Consensus 36 k~i~G~~P~L~l~d~~g~~~E~i 58 (78)
T PF08806_consen 36 KYIPGAPPELVLLDEDGEEVERI 58 (78)
T ss_dssp EEESS---EEEEE-SSS--SEEE
T ss_pred EEeCCCCCEEEEEcCCCCEEEEE
Confidence 33334568999998 88766553
No 360
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=27.19 E-value=54 Score=22.16 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=20.0
Q ss_pred CCceEEcChhhHHHhhccCCcEEEEEEcC
Q psy9104 32 ESSVLDLGDSDFEAVINQHETALVMFYAP 60 (128)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~lv~f~~~ 60 (128)
.....-++.+.|+.....++||+..|+.-
T Consensus 81 ~~hPhglsd~~Fd~lFT~DkPViFafHGY 109 (203)
T PF09363_consen 81 SEHPHGLSDEEFDALFTKDKPVIFAFHGY 109 (203)
T ss_dssp TT-TTS--HHHHHHHH-SSS-EEEEESSE
T ss_pred CCCCCcCCHHHHHHhcCCCCCEEEEcCCC
Confidence 44556678899999999999999999864
No 361
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.89 E-value=70 Score=21.68 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=24.0
Q ss_pred EEEEEEcCCCHHHhhhcHHHHHHHHHh
Q psy9104 53 ALVMFYAPWCGHCKKLKPEYEKAATDV 79 (128)
Q Consensus 53 ~lv~f~~~~C~~C~~~~~~l~~~~~~~ 79 (128)
.+.+++.|-|..|--.-|.++++....
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC
Confidence 467899999999999999999988774
No 362
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=26.76 E-value=87 Score=23.45 Aligned_cols=16 Identities=6% Similarity=-0.058 Sum_probs=10.8
Q ss_pred CCCccchHhHHHHHHH
Q psy9104 3 LPWSSGHVLCSLIRSN 18 (128)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (128)
.+|.+.+.++.|..++
T Consensus 20 gC~YYlryfFlF~SLI 35 (442)
T PF06637_consen 20 GCWYYLRYFFLFVSLI 35 (442)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 5677777777666655
No 363
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=26.15 E-value=82 Score=17.63 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=16.4
Q ss_pred hhhhhcCCC-CCCEEEEEeCCcccc
Q psy9104 99 ETCNKHGVS-GYPTLKIFRNGQVSK 122 (128)
Q Consensus 99 ~~~~~~~v~-~~Pt~~~~~~g~~~~ 122 (128)
..++.+++. +.+++++..||.++.
T Consensus 27 K~~~~l~l~~~~~~l~L~eDGT~Vd 51 (74)
T smart00266 27 KVCDKLALPDSPVTLVLEEDGTIVD 51 (74)
T ss_pred HHHHHhCCCCCCcEEEEecCCcEEc
Confidence 446677776 456677778998763
No 364
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=25.78 E-value=1.3e+02 Score=16.64 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=41.0
Q ss_pred hccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCC-CCeEEEEEeCCccchhhhhhcCCC
Q psy9104 47 INQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGAD-PPISFVKVDCTEAGKETCNKHGVS 107 (128)
Q Consensus 47 ~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~v~~~~vd~~~~~~~~~~~~~v~ 107 (128)
++.+..+++..-|.--..-......-.++.+...+.. +++.++...+++...+.++++|+.
T Consensus 9 ikdg~~ilvEikSs~~~~Dv~~f~rk~~lYek~~grk~~r~ivVtp~id~~a~~~A~~LGIe 70 (70)
T PF07788_consen 9 IKDGKVILVEIKSSVSRGDVYIFKRKAELYEKVHGRKVDRLIVVTPYIDDRAKEMAEELGIE 70 (70)
T ss_pred EECCeEEEEEEEccCCHHHHHHHHHHHHHHHHHHCCCcceEEEEEeecCHHHHHHHHHhCCC
Confidence 3667888888888766665555555555665555544 457777777776657778888763
No 365
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.65 E-value=1.2e+02 Score=20.33 Aligned_cols=17 Identities=6% Similarity=0.264 Sum_probs=11.6
Q ss_pred ChhhHHHhhccCCcEEE
Q psy9104 39 GDSDFEAVINQHETALV 55 (128)
Q Consensus 39 ~~~~~~~~~~~~~~~lv 55 (128)
+..+++..+++.+|.+-
T Consensus 43 TaaDLdk~Ls~~gP~~k 59 (210)
T COG5661 43 TAADLDKALSKSGPIIK 59 (210)
T ss_pred cHHHHHHHHHhcCCcee
Confidence 45667777877777653
No 366
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=25.29 E-value=50 Score=24.27 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.1
Q ss_pred cCCCHHHhhhcHHHHHHHHHhcC
Q psy9104 59 APWCGHCKKLKPEYEKAATDVKG 81 (128)
Q Consensus 59 ~~~C~~C~~~~~~l~~~~~~~~~ 81 (128)
..+||.|......++++...+..
T Consensus 94 ~t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 94 QTLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999888754
No 367
>KOG2990|consensus
Probab=25.18 E-value=57 Score=23.33 Aligned_cols=21 Identities=29% Similarity=0.751 Sum_probs=15.6
Q ss_pred CCcEEEEEEcC---CCHHHhhhcH
Q psy9104 50 HETALVMFYAP---WCGHCKKLKP 70 (128)
Q Consensus 50 ~~~~lv~f~~~---~C~~C~~~~~ 70 (128)
.+..||-|-.| ||..|+....
T Consensus 40 ~gilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 40 QGILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred cceEEEEEecccchhhccHHHhhh
Confidence 45667778766 9999987754
No 368
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.15 E-value=1e+02 Score=20.22 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=31.1
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCc--cchhhhhhcCCCCCCEEEE
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE--AGKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~v~~~Pt~~~ 114 (128)
.++++.++.|.+..-.+.+.. ..+....+|... ..+++........+|++..
T Consensus 3 L~~~~~sp~~~kv~l~l~e~g-------~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~ 56 (211)
T COG0625 3 LYGSPTSPYSRKVRLALEEKG-------LPYEIVLVDLDAEQKPPDFLALNPLGKVPALVD 56 (211)
T ss_pred eecCCCCcchHHHHHHHHHcC-------CCceEEEeCcccccCCHHHHhcCCCCCCCEEee
Confidence 456666688877755554432 125666677653 2144555555667999874
No 369
>KOG4357|consensus
Probab=24.70 E-value=1.8e+02 Score=18.11 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=27.2
Q ss_pred hhHHHhhccCCcEEEEEEc--CCCHHHhhhcHHHHHHHHHhcC----CCCCeEEEEEeCC
Q psy9104 41 SDFEAVINQHETALVMFYA--PWCGHCKKLKPEYEKAATDVKG----ADPPISFVKVDCT 94 (128)
Q Consensus 41 ~~~~~~~~~~~~~lv~f~~--~~C~~C~~~~~~l~~~~~~~~~----~~~~v~~~~vd~~ 94 (128)
+++....++++..+++..- |..|.-+..+|.-+++-..+.+ .+.++.-..||.+
T Consensus 55 edil~mskkgktlmlfv~v~~psqp~~kd~rpftee~tqiwq~qlfn~~~dlq~fii~dd 114 (164)
T KOG4357|consen 55 EDILKMSKKGKTLMLFVGVSDPSQPDEKDIRPFTEEITQIWQGQLFNAHVDLQRFIIDDD 114 (164)
T ss_pred HHHHHHhhcCceEEEEEEecCCCCCChhhccchhHHHHHHHHHHhhccccceEEEEecCC
Confidence 3333333556666555553 3466667776666665444432 2333444444443
No 370
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=24.50 E-value=59 Score=17.16 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=12.0
Q ss_pred CCCHHHhhhcHHHHH
Q psy9104 60 PWCGHCKKLKPEYEK 74 (128)
Q Consensus 60 ~~C~~C~~~~~~l~~ 74 (128)
++|++|.+.+-.+..
T Consensus 14 s~sp~~~~v~~~L~~ 28 (72)
T cd03054 14 SLSPECLKVETYLRM 28 (72)
T ss_pred CCCHHHHHHHHHHHh
Confidence 589999888777755
No 371
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=24.39 E-value=1.3e+02 Score=16.19 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=28.1
Q ss_pred EEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEE
Q psy9104 56 MFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~ 114 (128)
+|+.+ ++.|++.+-.+.+..-. +....++..+. .+.+.+......+|++..
T Consensus 4 Ly~~~-~~~~~~v~~~l~~~gl~-------~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (81)
T cd03048 4 LYTHG-TPNGFKVSIMLEELGLP-------YEIHPVDISKGEQKKPEFLKINPNGRIPAIVD 57 (81)
T ss_pred EEeCC-CCChHHHHHHHHHcCCC-------cEEEEecCcCCcccCHHHHHhCcCCCCCEEEe
Confidence 34444 58998887766654322 55556664321 134444444557898854
No 372
>KOG0854|consensus
Probab=24.35 E-value=1.2e+02 Score=20.29 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=32.3
Q ss_pred CCcEEEEEE--cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 50 HETALVMFY--APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 50 ~~~~lv~f~--~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
+..+.|+|. ++.-|-|......+.+++.++..++ +..+...++
T Consensus 31 gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d 75 (224)
T KOG0854|consen 31 GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVD 75 (224)
T ss_pred ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehh
Confidence 445666776 5678999999999999999998877 555544444
No 373
>KOG0833|consensus
Probab=24.31 E-value=44 Score=21.95 Aligned_cols=17 Identities=29% Similarity=0.737 Sum_probs=13.2
Q ss_pred cCCCHHHhhhcHHHHHH
Q psy9104 59 APWCGHCKKLKPEYEKA 75 (128)
Q Consensus 59 ~~~C~~C~~~~~~l~~~ 75 (128)
.+-|+.|+++..++.+.
T Consensus 102 ~tPCG~CRQfl~Ef~~~ 118 (173)
T KOG0833|consen 102 TTPCGVCRQFLREFGNA 118 (173)
T ss_pred CCCcHHHHHHHHHHhhc
Confidence 34599999998888764
No 374
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=23.83 E-value=61 Score=23.96 Aligned_cols=63 Identities=16% Similarity=0.383 Sum_probs=35.3
Q ss_pred CHHHhhhcHHHHHHHHHhcCCC----CCeEEEEEeCCccchhhhh--hcCCC-CCC-EEEEEeCCcccccc
Q psy9104 62 CGHCKKLKPEYEKAATDVKGAD----PPISFVKVDCTEAGKETCN--KHGVS-GYP-TLKIFRNGQVSKAK 124 (128)
Q Consensus 62 C~~C~~~~~~l~~~~~~~~~~~----~~v~~~~vd~~~~~~~~~~--~~~v~-~~P-t~~~~~~g~~~~~~ 124 (128)
||.|-+..-.+.++.++.+... ..+.+..+-|-=|.+.-++ .+++. +-| ...+|++|+.+++.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~ 341 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKV 341 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEec
Confidence 9999877777777666544321 2477888887655444443 35554 333 48889999988877
No 375
>PRK04011 peptide chain release factor 1; Provisional
Probab=23.16 E-value=1.7e+02 Score=22.06 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcC
Q psy9104 70 PEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHG 105 (128)
Q Consensus 70 ~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~ 105 (128)
+.++++.+.....+.++.++.-+.++- ..+.+.|+
T Consensus 367 ~~v~~l~e~a~~~g~~v~iis~~~e~G-~qL~~~fG 401 (411)
T PRK04011 367 DIIEELSELAEQSGTKVEVISTDTEEG-EQLLKAFG 401 (411)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCChhH-HHHHHcCC
Confidence 456666665555555566665554444 55655553
No 376
>KOG4498|consensus
Probab=23.14 E-value=1.8e+02 Score=19.62 Aligned_cols=46 Identities=9% Similarity=0.287 Sum_probs=32.2
Q ss_pred HhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEe
Q psy9104 45 AVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92 (128)
Q Consensus 45 ~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd 92 (128)
...++.+.++...--+.|--|++....|..+..-....+ +..+.+-
T Consensus 46 ~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg 91 (197)
T KOG4498|consen 46 SLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVG 91 (197)
T ss_pred HhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEe
Confidence 333555666666667999999999999999866665544 5555554
No 377
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=22.91 E-value=2.6e+02 Score=19.25 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=18.1
Q ss_pred CceEEcChhhHHHhhccCCcEEEEE
Q psy9104 33 SSVLDLGDSDFEAVINQHETALVMF 57 (128)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~lv~f 57 (128)
..++.++-+++++-++..+|..|.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~p~aViF 68 (237)
T TIGR01672 44 APIHWISVAQIENSLEGRPPIAVSF 68 (237)
T ss_pred CCeeEEEHHHHHHhcCCCCCeEEEE
Confidence 3466777788888888777766666
No 378
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=22.88 E-value=20 Score=25.17 Aligned_cols=8 Identities=38% Similarity=1.103 Sum_probs=5.7
Q ss_pred CCCHHHhh
Q psy9104 60 PWCGHCKK 67 (128)
Q Consensus 60 ~~C~~C~~ 67 (128)
-|||.||.
T Consensus 266 ~~CP~CQ~ 273 (274)
T PRK01103 266 FFCPRCQK 273 (274)
T ss_pred EECcCCCC
Confidence 47888875
No 379
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=22.79 E-value=94 Score=17.69 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=15.8
Q ss_pred hhhhhcCCC--C-CCEEEEEeCCcccc
Q psy9104 99 ETCNKHGVS--G-YPTLKIFRNGQVSK 122 (128)
Q Consensus 99 ~~~~~~~v~--~-~Pt~~~~~~g~~~~ 122 (128)
..++.+++. + ..++++..||.++.
T Consensus 29 K~~~~l~l~~~~~~~~lvL~eDGT~Vd 55 (80)
T cd06536 29 KACESLGFDSSSAPITLVLAEDGTIVE 55 (80)
T ss_pred HHHHHhCCCCCCCceEEEEecCCcEEc
Confidence 345667775 2 35677778998773
No 380
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=22.69 E-value=21 Score=25.10 Aligned_cols=8 Identities=50% Similarity=1.460 Sum_probs=5.6
Q ss_pred CCCHHHhh
Q psy9104 60 PWCGHCKK 67 (128)
Q Consensus 60 ~~C~~C~~ 67 (128)
-|||.||+
T Consensus 265 ~~CP~CQ~ 272 (272)
T PRK14810 265 HYCPHCQK 272 (272)
T ss_pred EECcCCcC
Confidence 47888873
No 381
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=22.42 E-value=75 Score=16.94 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=11.9
Q ss_pred CCCEEEEEeCCcccc
Q psy9104 108 GYPTLKIFRNGQVSK 122 (128)
Q Consensus 108 ~~Pt~~~~~~g~~~~ 122 (128)
..|++..|+||+.+.
T Consensus 11 P~P~v~W~kdg~~l~ 25 (67)
T cd05863 11 PPPEFQWYKDGKLIS 25 (67)
T ss_pred CCCEEEEEECCEECc
Confidence 467889999998764
No 382
>PF09590 Env-gp36: Lentivirus surface glycoprotein; InterPro: IPR018582 The proteins in this family are envelope glycoproteins from feline immunodeficiency retrovirus. The process of lentiviral envelope glycoprotein-mediated fusion of membranes is essential for viral entry and syncytia formation [].
Probab=22.16 E-value=1.9e+02 Score=22.81 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=16.6
Q ss_pred ccCCcEEEEEEcCCCHHHhhhcH
Q psy9104 48 NQHETALVMFYAPWCGHCKKLKP 70 (128)
Q Consensus 48 ~~~~~~lv~f~~~~C~~C~~~~~ 70 (128)
++...+.-.-|++-||.|+++..
T Consensus 184 ~~~E~I~~~C~~pE~p~~ed~~~ 206 (591)
T PF09590_consen 184 EETEIINFQCWGPECPACEDFLG 206 (591)
T ss_pred cccceEEEEeecCCCchhHHHhh
Confidence 44455666678999999987754
No 383
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.91 E-value=1.4e+02 Score=18.97 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=14.7
Q ss_pred hHhHHHHHHHHHHHHHHhhhccC
Q psy9104 9 HVLCSLIRSNLMLVLGFALVSCD 31 (128)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (128)
+.+..++..++.+++.+..+++.
T Consensus 2 k~l~kl~~~~~alil~~sl~gCg 24 (152)
T COG4808 2 KALNKLFSLVVALVLVFSLAGCG 24 (152)
T ss_pred hhHHHHHHHHHHHHHHHHhhhcC
Confidence 45666666666666666666665
No 384
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=21.77 E-value=54 Score=23.62 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=12.1
Q ss_pred EEEcCCCHHHhhhcHH
Q psy9104 56 MFYAPWCGHCKKLKPE 71 (128)
Q Consensus 56 ~f~~~~C~~C~~~~~~ 71 (128)
..+..+|..|+..+|.
T Consensus 106 ~~~~~~C~~C~~~KP~ 121 (309)
T COG5273 106 FGTENFCSTCNIYKPP 121 (309)
T ss_pred cccceeccccccccCC
Confidence 5567789999888774
No 385
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=21.72 E-value=49 Score=17.97 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=25.1
Q ss_pred cCCCHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCCccchhhhhhcCCCCCCEEEEE
Q psy9104 59 APWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115 (128)
Q Consensus 59 ~~~C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~ 115 (128)
.+.||.|... ....++.+ + ++.+|-+ + ..+++..+++ .|-.+-+
T Consensus 17 ~~~Cp~Cgs~-----~~S~~w~G----~-v~i~dPe-~-S~vAk~~~i~-~pG~YAl 60 (64)
T PRK06393 17 EKTCPVHGDE-----KTTTEWFG----F-LIITEPE-G-SAIAKRAGIT-EPGMYAI 60 (64)
T ss_pred CCcCCCCCCC-----cCCcCcce----E-EEEECCc-h-hHHHHHhCCC-CCCeEEE
Confidence 4578888762 23333333 2 2223433 3 5889999998 7765443
No 386
>KOG3160|consensus
Probab=21.70 E-value=72 Score=21.85 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=19.8
Q ss_pred cCCcEEEEEEcCCCHHHhhhc-HHHHHHH
Q psy9104 49 QHETALVMFYAPWCGHCKKLK-PEYEKAA 76 (128)
Q Consensus 49 ~~~~~lv~f~~~~C~~C~~~~-~~l~~~~ 76 (128)
.++..+-.||-.-||+|+++. ..|...-
T Consensus 38 ~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~ 66 (220)
T KOG3160|consen 38 APKVNITLYYEALCPDCSKFIRNQLYPFF 66 (220)
T ss_pred CCeeEEEEEEEecCccHHHHHHHHHHHHH
Confidence 346778889999999999883 3443333
No 387
>PRK13620 psbV cytochrome c-550; Provisional
Probab=21.28 E-value=26 Score=23.72 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=7.5
Q ss_pred cCCCHHHh
Q psy9104 59 APWCGHCK 66 (128)
Q Consensus 59 ~~~C~~C~ 66 (128)
..||..|+
T Consensus 112 ~~~Ca~CH 119 (215)
T PRK13620 112 AYACGQCH 119 (215)
T ss_pred Hhhhhhcc
Confidence 88999998
No 388
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.03 E-value=1.9e+02 Score=16.98 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=22.5
Q ss_pred cChhhHHHhhccCCcEEEEEEcCCCHHHhhhcHHHHHHHHH
Q psy9104 38 LGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATD 78 (128)
Q Consensus 38 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~ 78 (128)
.+.+++.+.+.+.+|-+|-+....-.+-......++++.+.
T Consensus 37 ~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 37 VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEA 77 (119)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHc
Confidence 45667777776666666666654333334444444444443
No 389
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.02 E-value=1.9e+02 Score=19.98 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=24.2
Q ss_pred CHHHhhhcHHHHHHHHHhcCCCCCeEEEEEeCC
Q psy9104 62 CGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94 (128)
Q Consensus 62 C~~C~~~~~~l~~~~~~~~~~~~~v~~~~vd~~ 94 (128)
-.+|..++..+.++++++... ++++.=|+.
T Consensus 168 mkHsv~iMk~Lrrla~el~Kt---iviVlHDIN 197 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKT---IVVVLHDIN 197 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCe---EEEEEeccc
Confidence 489999999999999998765 666666653
No 390
>PF08168 NUC205: NUC205 domain; InterPro: IPR012584 This domain is found in a novel family of nucleolar proteins [].; GO: 0005634 nucleus
Probab=20.47 E-value=60 Score=16.15 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=15.8
Q ss_pred hhHHHhhccCCcEEEEEEcCCCHH
Q psy9104 41 SDFEAVINQHETALVMFYAPWCGH 64 (128)
Q Consensus 41 ~~~~~~~~~~~~~lv~f~~~~C~~ 64 (128)
.+|...+.+.-..++-.++++|.+
T Consensus 6 ~Sfta~V~~k~isL~~L~SDGCiy 29 (44)
T PF08168_consen 6 KSFTASVDRKFISLMSLSSDGCIY 29 (44)
T ss_pred hhhheeeecceEEEEEeccCCcee
Confidence 345555566666677788888754
No 391
>PRK11752 putative S-transferase; Provisional
Probab=20.19 E-value=3.1e+02 Score=18.99 Aligned_cols=58 Identities=19% Similarity=0.100 Sum_probs=33.7
Q ss_pred EEEEEcCCCHHHhhhcHHHHHH-HHHhcCCCCCeEEEEEeCCcc---chhhhhhcCCCCCCEEEE
Q psy9104 54 LVMFYAPWCGHCKKLKPEYEKA-ATDVKGADPPISFVKVDCTEA---GKETCNKHGVSGYPTLKI 114 (128)
Q Consensus 54 lv~f~~~~C~~C~~~~~~l~~~-~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~v~~~Pt~~~ 114 (128)
+-+|+ ..++.|++..-.++++ +...++ ..+..+.+|..+. .+++.+-.-...+|+++.
T Consensus 45 ~~Ly~-~~s~~~~rV~i~L~e~~~~~~~g--l~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYS-LGTPNGQKVTIMLEELLALGVKG--AEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred eEEec-CCCCchHHHHHHHHHHHhccCCC--CceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 44444 5699999988888774 222222 1266677776432 134444444457899965
No 392
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=20.17 E-value=38 Score=18.29 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=10.3
Q ss_pred EeCCccchhhhhhcCCC
Q psy9104 91 VDCTEAGKETCNKHGVS 107 (128)
Q Consensus 91 vd~~~~~~~~~~~~~v~ 107 (128)
+|-++ .++++++++.
T Consensus 40 idpe~--SeIAkrlgi~ 54 (64)
T COG2093 40 IDPEK--SEIAKRLGIK 54 (64)
T ss_pred EcCcH--HHHHHHhCCC
Confidence 45444 4899999884
Done!