RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9104
(128 letters)
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 151 bits (384), Expect = 5e-49
Identities = 45/95 (47%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+E VL L S+F + H+ LV FYAPWCGHCK L PEY KAA +K I K
Sbjct: 5 EEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAK 64
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKK 125
VD TE + ++GV GYPT+K FRNG + K+
Sbjct: 65 VDATE-ESDLAQQYGVRGYPTIKFFRNGDTASPKE 98
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 147 bits (372), Expect = 7e-47
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+E+ V L D +F+ + +T L+ FYAPWCGHCK+ PEYEK A+ +K DPPI+ K
Sbjct: 15 EENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAK 74
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
+D T +K VSGYPT+KI + GQ
Sbjct: 75 IDATS-ASMLASKFDVSGYPTIKILKKGQAVD 105
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 142 bits (360), Expect = 8e-44
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+E+ VL L D++F+ + +T L+ FYAPWCGHCK+ PEYEK A +K DPPI K
Sbjct: 13 EENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAK 72
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
+D T ++ VSGYPT+KI + GQ
Sbjct: 73 IDATS-ASVLASRFDVSGYPTIKILKKGQAVD 103
Score = 117 bits (294), Expect = 5e-34
Identities = 45/95 (47%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 28 VSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPIS 87
+ L L +F+ V+N + LV FYAPWCGHCKKL PEYEKAA ++ PPI
Sbjct: 125 WTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIP 184
Query: 88 FVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
KVD T + + VSGYPTLKIFR G+
Sbjct: 185 LAKVDATAE-TDLAKRFDVSGYPTLKIFRKGRPYD 218
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 136 bits (344), Expect = 5e-43
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
S+VL L +++F+ I + + FYAPWCGHCK L P +E+ + + +VD
Sbjct: 5 STVLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 63
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
CT A + C+K+ V GYPTL +FR G+
Sbjct: 64 CT-AERNICSKYSVRGYPTLLLFRGGKKVS 92
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 134 bits (339), Expect = 5e-42
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 29 SCDESSVLDLGDSDFE-AVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKG-ADPPI 86
S V++L D F+ V++ + +V FYAPWCGHCK L+PE+ AA++VK +
Sbjct: 3 SGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKV 62
Query: 87 SFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
VD T + +++G+ G+PT+KIF+ G+
Sbjct: 63 KLAAVDATV-NQVLASRYGIRGFPTIKIFQKGESPV 97
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 132 bits (334), Expect = 2e-41
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 31 DESSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
V++L S+F VI LV FYAPWCGHC++L PE++KAAT +K +
Sbjct: 15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD---VVKVG 71
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQ 119
V+ + + ++GV G+PT+KIF +
Sbjct: 72 AVNADK-HQSLGGQYGVQGFPTIKIFGANK 100
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 133 bits (337), Expect = 2e-40
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 31 DESSVLDLGDSDFE-AVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
+ L AV+ V F+A WCGHC P + A DVK P +
Sbjct: 10 PSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLA 69
Query: 90 KVDCT-EAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127
+DC E C + G+PT++ F + +
Sbjct: 70 ALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVF 108
Score = 61.6 bits (149), Expect = 9e-13
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 29 SCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISF 88
+C L + D N E ++F +++ + + ++
Sbjct: 136 ACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLSQ--------HKGVAV 187
Query: 89 VKVDCTEAGKETCNKHGVSGYPTLK-IFRNGQVSK 122
+V TE K GV+ +P+ +FRNG VS+
Sbjct: 188 RRVLNTE--ANVVRKFGVTDFPSCYLLFRNGSVSR 220
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 136 bits (343), Expect = 5e-40
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADP---PISFV 89
S + L + + ++N + ALV FYA WC + L P +E+A+ +K P + F
Sbjct: 5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFA 64
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
+VDC + + ++ +S YPTLK+FRNG + K
Sbjct: 65 RVDCDQ-HSDIAQRYRISKYPTLKLFRNGMMMK 96
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 128 bits (324), Expect = 7e-40
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 29 SCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISF 88
S +V + D ++ ++ ++ FYAPWC C+ L+PE+E A + D ++
Sbjct: 3 SGSSGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGE--DLEVNI 58
Query: 89 VKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
KVD TE + ++ PT+ ++G+ +
Sbjct: 59 AKVDVTE-QPGLSGRFIINALPTIYHCKDGEFRR 91
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 137 bits (346), Expect = 9e-40
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
++S+V+ L F I H+ L F+APWCGHCK + PEY KAA + + I+ +
Sbjct: 12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQ 69
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKK 125
+DCTE ++ C +H + G+P+LKIF+N V+ +
Sbjct: 70 IDCTE-NQDLCMEHNIPGFPSLKIFKNSDVNNSID 103
Score = 106 bits (266), Expect = 2e-28
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 32 ESSVLDLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+SSV L + E V + + LV++YAPWCGHCK+L P Y++ A A + K
Sbjct: 357 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAK 416
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKK 125
+D T + + GYPT+ ++ G+ S++
Sbjct: 417 LDHT---ENDVRGVVIEGYPTIVLYPGGKKSESVV 448
Score = 43.3 bits (101), Expect = 5e-06
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
++ S F + L + ++ KP + + A +G ++FV +D
Sbjct: 223 FGEIDGSVFAQYVESG-LPLGYLFYNDEEELEEYKPLFTELAKKNRGL---MNFVSIDAR 278
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQVSK 122
+ G+ N + +P I + K
Sbjct: 279 KFGRHAGNLNMKEQFPLFAIHDMTEDLK 306
Score = 33.3 bits (75), Expect = 0.014
Identities = 10/67 (14%), Positives = 20/67 (29%)
Query: 23 LGFALVSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGA 82
A+ + ++ VI Q F A + K +Y+ + +
Sbjct: 121 SQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADD 180
Query: 83 DPPISFV 89
D +S
Sbjct: 181 DFKLSIY 187
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 132 bits (332), Expect = 4e-39
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 31 DESSVLDLGDSDFEAVINQHE-TALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
+ + +L F+ I+ T+LV FYAPWCGHCKKL + KAA + G ++ V
Sbjct: 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG-VVQVAAV 73
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127
D + K C K+ V+G+PTL +FR ++ +K +
Sbjct: 74 NCDLNK-NKALCAKYDVNGFPTLMVFRPPKIDLSKPID 110
Score = 37.8 bits (87), Expect = 4e-04
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 55 VMFYAPWCGHCKKLK---PEYEKAATDVKGADPPISFVKVDCTE 95
FY+ K+L P YEK K + + +
Sbjct: 190 FDFYSISNKKLKQLTDMNPTYEKTPEIFKY-LQKVIPEQRQSDK 232
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 133 bits (336), Expect = 3e-38
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 31 DESSVLDLGDSDFE-AVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
+ L V+ V F+A WCGH P +++ A DVK P ++
Sbjct: 10 SSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLA 69
Query: 90 KVDCT-EAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127
+DC E C + ++G+PT++ F+ + + T
Sbjct: 70 VLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATL 108
Score = 30.3 bits (67), Expect = 0.16
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 14/92 (15%)
Query: 29 SCDESSVLDLGDSDFEAVINQHETALVMF--YAPWCGHCKKLKPEYEKAATDVKGADPPI 86
+C L D D N+ + ++F + G L A +
Sbjct: 136 ACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQYHA----------V 185
Query: 87 SFVKVDCTEAGKETCNKHGVSGYPTLKIFRNG 118
+ +V TE + NK GV+ +P+ +
Sbjct: 186 AVRRVLNTE--SDLVNKFGVTDFPSCYLLLRN 215
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 115 bits (291), Expect = 6e-35
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 33 SSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
+ +DL F V+ +V FYAPWCG C+ PE+E A +KG + KV
Sbjct: 3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKV 59
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
DC +TC K G+ YP++K+++ + K+
Sbjct: 60 DCQAY-PQTCQKAGIKAYPSVKLYQYERAKKSI 91
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 120 bits (303), Expect = 3e-34
Identities = 15/98 (15%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCK------KLKPEYEKAATDVKGADP 84
V+++ +++ V ++E ++++ P + E AA ++ D
Sbjct: 11 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLE--DK 68
Query: 85 PISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
+ F VD + K G++ ++ +F+ +V +
Sbjct: 69 GVGFGLVDSEK-DAAVAKKLGLTEEDSIYVFKEDEVIE 105
Score = 32.3 bits (73), Expect = 0.030
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
+V F + + A D +P +S + +D +
Sbjct: 251 IVAFAEEADPDGYEFLEILKSVAQDNTD-NPDLSIIWIDPDD 291
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 122 bits (306), Expect = 4e-34
Identities = 50/93 (53%), Positives = 62/93 (66%), Gaps = 7/93 (7%)
Query: 33 SSVLDLGDSDFEAVINQ---HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
S VL+L D +FE+ I+ LV F+APWCGH K+L PEYE AAT +KG +
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG---IVPLA 57
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
KVDCT TCNK+GVSGYPTLKIFR+G+ +
Sbjct: 58 KVDCTA-NTNTCNKYGVSGYPTLKIFRDGEEAG 89
Score = 99 bits (248), Expect = 5e-26
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 36 LDLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
+ +F E V N+++ L+ FYAPWCGHCK L+P+Y++ + DP I K+D T
Sbjct: 355 KVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSK-DPNIVIAKMDAT 413
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQVSKAKK 125
+ + + V G+PT+ + KK
Sbjct: 414 A--NDVPSPYEVRGFPTIYFSPANKKLNPKK 442
Score = 32.1 bits (72), Expect = 0.034
Identities = 9/81 (11%), Positives = 18/81 (22%), Gaps = 7/81 (8%)
Query: 54 LVMFYAPWCGHCKK----LKPEYEKAATDVKGADPPISFVKVDCTEAG---KETCNKHGV 106
L+ +Y K + A A ++F + +
Sbjct: 237 LIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTA 296
Query: 107 SGYPTLKIFRNGQVSKAKKTE 127
P + I + E
Sbjct: 297 GEIPVVAIRTAKGEKFVMQEE 317
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 120 bits (301), Expect = 5e-34
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGA-----DPP 85
+ V+ L + +F+ V+ +++ L ++Y K + +++ ++
Sbjct: 9 GKDRVVSLTEKNFKQVLKKYDV-LCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKD 67
Query: 86 ISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
I FV VD + + K G +L + + +
Sbjct: 68 IGFVMVDAKK-EAKLAKKLGFDEEGSLYVLKGDRT 101
Score = 32.7 bits (74), Expect = 0.018
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 11/88 (12%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
D +++ + + L+ F+ + +E+AA + I F
Sbjct: 123 DPVEIINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAEHFQPY---IKFFA 176
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNG 118
K K + + +
Sbjct: 177 TF----DKGVAKKLSLKM-NEVDFYEPF 199
Score = 31.6 bits (71), Expect = 0.048
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
+V F + ++ A D +P +S V +D +
Sbjct: 249 IVAFAERSDPDGYEFLEILKQVARDNTD-NPDLSIVWIDPDDFPLL 293
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 113 bits (284), Expect = 1e-33
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 31 DESSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGA--DPPIS 87
S V++L D F++ V++ + V++Y PW H ++ +
Sbjct: 13 RPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFV 72
Query: 88 FVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKK 125
++D + + VSG+PT++ + + +
Sbjct: 73 AARIDGE-KYPDVIERMRVSGFPTMRYYTRIDKQEPFE 109
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 112 bits (283), Expect = 2e-33
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 31 DESSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
V + F+A V++ + L+ FYAPWCGHCK+L+P Y KG +
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKG-QKDLVIA 63
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127
K+D T A T +++ V G+PT+ +G K E
Sbjct: 64 KMDAT-ANDITNDQYKVEGFPTIYFAPSGDKKNPIKFE 100
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 115 bits (287), Expect = 2e-31
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 31 DESSVLDLGDSDFEAVINQHET--ALVMFYAPWCGHCKKLKPEYEKAATDVKG-----AD 83
+SSV+DL DF V +V+FY CG C++ + K A +K A
Sbjct: 21 LDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDAL 80
Query: 84 PPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKK 125
+ V+C + C K+ ++ P L F ++ +
Sbjct: 81 QIATAAAVNCAS-EVDLCRKYDINFVPRLFFFYPRDSCRSNE 121
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 112 bits (282), Expect = 3e-30
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 30 CDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
D+ ++ L +F+A +N E V FY+P H L P + + A +V G +
Sbjct: 113 DDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDG---LLRIG 169
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
V+C + + C GV+ YP+L IFR+G +
Sbjct: 170 AVNCGDD-RMLCRMKGVNSYPSLFIFRSGMAAV 201
Score = 102 bits (255), Expect = 1e-26
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 32 ESSVLDLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+ +DL F E V+ +V FYAPW G + PE+E A +KG + K
Sbjct: 656 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG---KVRAGK 712
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127
VDC A +TC K G+ YP++K+++ + K+ E
Sbjct: 713 VDCQ-AYPQTCQKAGIKAYPSVKLYQYERAKKSIWEE 748
Score = 99.4 bits (247), Expect = 1e-25
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 32 ESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
S V LG +F + E LV F+APW + L PE KA+T + G + +
Sbjct: 439 NSHVTTLGPQNFP--ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTL 493
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQVSK 122
DCT + CN + + YPT +F + +
Sbjct: 494 DCTIH-EGLCNMYNIQAYPTTVVFNQSSIHE 523
Score = 91.7 bits (227), Expect = 7e-23
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 32 ESSVLDLGDSDFEAVINQH---ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISF 88
SV+ L S F ++ Q E +V FY+PW + L PE+++ A + G I+
Sbjct: 542 NPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INV 598
Query: 89 VKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
VDC + C + V YP ++ + +
Sbjct: 599 GSVDCGQY-HSFCTQENVQRYPEIRFYPQKSSKAYQ 633
Score = 74.4 bits (182), Expect = 6e-17
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Query: 32 ESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
S+V +L +F I A V + +C + + D ++ V
Sbjct: 221 RSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGM-LDGLVNVGWV 279
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127
DC A C + T ++ +K+
Sbjct: 280 DCD-AQDSLCKSLDTTASTTAYFPPGATLNDREKSS 314
Score = 55.5 bits (133), Expect = 2e-10
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 37 DLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96
D + ++ + + + + PE +K T +K I V+ DC+ A
Sbjct: 336 DFELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLKN--EHIQVVRFDCSSA 393
Query: 97 GKETCNKHGVSGYPTLKIFRNGQVSKAKKTE 127
C+ V P+L +F+ + +
Sbjct: 394 -PGICSDLYVF-QPSLAVFKGQGTKEYEIHH 422
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 107 bits (267), Expect = 5e-30
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 27 LVSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPI 86
+V L L F VI + + LV F + K + E+++ A + +
Sbjct: 1 MVHT--KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSAS-SDDL 55
Query: 87 SFVKVDCTEAG----KETCNKHGV--SGYPTLKIFRNGQVSKAKK 125
+V ++ G E K+ + YP +FR+G
Sbjct: 56 LVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVP 100
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 99.8 bits (249), Expect = 2e-28
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 31 DESSVLDLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGA--DPPIS 87
E V + ++ E V++ + L+ FYAPWCGHCK L P+YE+ + +
Sbjct: 5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVV 64
Query: 88 FVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKK 125
KVD T + G+PT+K++ G +
Sbjct: 65 IAKVDATANDV----PDEIQGFPTIKLYPAGAKGQPVT 98
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 98.2 bits (244), Expect = 1e-25
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 31 DESSVLDLGDSDF-EAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
D+ V L +F + ++ + V FYAPWCGHCK+L P ++K K I
Sbjct: 247 DKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD-HENIVIA 305
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAKK 125
K+D T V +PTLK F
Sbjct: 306 KMDST---ANEVEAVKVHSFPTLKFFPASADRTVID 338
Score = 57.8 bits (139), Expect = 4e-11
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 35 VLDLGDSDFEAVINQH-ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
V++ + + +T +++F ++ AA KG F+ D
Sbjct: 119 VIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-KILFIFIDSDH 177
Query: 94 TEAGKETCNKHGVSGY--PTLKIFRNGQVSKAKKTE 127
T+ + G+ P +++ + K E
Sbjct: 178 TDNQRI-LEFFGLKKEECPAVRLITLEEEMTKYKPE 212
Score = 30.8 bits (69), Expect = 0.097
Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 12/77 (15%)
Query: 42 DFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC 101
E+++ E A++ F+ ++ +AA + I F +
Sbjct: 27 AAESLVESSEVAVIGFFKDVES---DSAKQFLQAAEAIDD----IPFGITS----NSDVF 75
Query: 102 NKHGVSGYPTLKIFRNG 118
+K+ + + +F+
Sbjct: 76 SKYQLDK-DGVVLFKKF 91
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 80.1 bits (198), Expect = 1e-20
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 19 LMLVLGFALVSCDESSVLDLGDSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAA 76
L L LG + V ++ F ++ V+ + WCG CK + P+YEK A
Sbjct: 4 LELALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLA 63
Query: 77 TDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ F+K+DC + K + G+ PT KI + V
Sbjct: 64 EEYLDV----IFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 103
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 79.3 bits (196), Expect = 1e-20
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
S++ D+ A A+V F+ C HCK ++ +K ++ VD
Sbjct: 2 SAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ----VAISSVD 57
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+EA E + G PTL R+G+V
Sbjct: 58 -SEARPELMKELGFERVPTLVFIRDGKV 84
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 79.3 bits (196), Expect = 1e-20
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 33 SSVLDLGDSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
V ++ F ++ V+ + WCG K + P+YEK A + F+K
Sbjct: 5 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDV----IFLK 60
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+DC + K + G+ PT KI + V
Sbjct: 61 LDCNQENKTLAKELGIRVVPTFKILKENSV 90
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 79.4 bits (196), Expect = 3e-20
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
V++ + ++ ++ F+APWCG C+ P + + A + G + FVKV+ T
Sbjct: 40 VINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVN-T 95
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQV 120
EA + + PT+ ++RNG++
Sbjct: 96 EAEPALSTRFRIRSIPTIMLYRNGKM 121
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 77.3 bits (191), Expect = 7e-20
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 42 DFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC 101
+ I + + L+ CG C + + + + +++ + +E
Sbjct: 10 ELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY----NYVEKIEILLQDM-QEIA 64
Query: 102 NKHGVSGYPTLKIFRNGQV 120
++ V PT+ +F NG+
Sbjct: 65 GRYAVFTGPTVLLFYNGKE 83
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 77.4 bits (191), Expect = 1e-19
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
V++ + F + LV F+APWCG C+ + P E+ A D G + VKV+
Sbjct: 33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVN 89
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ ++GV PTL +FR G
Sbjct: 90 -VDEHPGLAARYGVRSVPTLVLFRRGAP 116
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 78.6 bits (193), Expect = 5e-19
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
+ +DL + FE + + ++V F + + + A + V
Sbjct: 16 TGCVDLDELSFEKTVERFPYSVVKFDIASP--YGEKHEAFTAFSKSAHKATKDLLIATVG 73
Query: 93 CTEAG----KETCNKHGV--SGYPTLKIFRNGQ 119
+ G K +++ V +P++ +F+
Sbjct: 74 VKDYGELENKALGDRYKVDDKNFPSIFLFKGNA 106
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 73.7 bits (181), Expect = 3e-18
Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATD----VKGADPPI 86
++ ++ + +F ++ ++ Y+ C HC + P+ +A+ + +
Sbjct: 14 EDGRLIYITPEEFRQLLQGDA--ILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGS 71
Query: 87 SFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ + A + NK GV G PTL ++ G++
Sbjct: 72 LIGERE-LSAARLEMNKAGVEGTPTLVFYKEGRI 104
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 73.6 bits (181), Expect = 5e-18
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 33 SSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
SS+++ D + V + + +VMFY+P C +CK ++P +E+ A + + F ++
Sbjct: 6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRI 62
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+GV G PT K F +G+ +
Sbjct: 63 N-IATNPWTAEKYGVQGTPTFKFFCHGRPVWEQ 94
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 72.4 bits (178), Expect = 9e-18
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
F+ V + ++ F+A WCG CK + P +EK + G + F KVD E +
Sbjct: 23 YDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQ-SQ 79
Query: 100 TCNKHGVSGYPTLKIFRNGQV 120
+ G+ PT F+NGQ
Sbjct: 80 IAQEVGIRAMPTFVFFKNGQK 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 75.6 bits (186), Expect = 1e-17
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 33 SSVLDLGDSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+++++ +S+ + V+ Q T V+ F++ HC +L P E A G K
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAK 63
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+DC +A + + G+ PT+ +F+NGQ
Sbjct: 64 LDC-DAEQMIAAQFGLRAIPTVYLFQNGQP 92
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 72.0 bits (177), Expect = 1e-17
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 31 DESSVLDLGD-SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
+S+ L + ++F +I Q++ ++ FYA WCG CK ++P K + FV
Sbjct: 10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFV 65
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
K D E+ + + V+ PT + ++GQ+
Sbjct: 66 KCDVDES-PDIAKECEVTAMPTFVLGKDGQL 95
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 72.5 bits (178), Expect = 2e-17
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 40 DSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK 98
D A LV F+APWCG C+++ P+++ AA + G + K+D T+A
Sbjct: 53 DPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKID-TQAHP 108
Query: 99 ETCNKHGVSGYPTLKIFRNGQVSKAK 124
+H + G P +F G+
Sbjct: 109 AVAGRHRIQGIPAFILFHKGRELARA 134
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 70.8 bits (174), Expect = 2e-17
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
++F+++I+Q+E +V F+A WCG CK++ P YE+ + + F+KVD E E
Sbjct: 16 QAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY----TKMVFIKVDVDEV-SE 70
Query: 100 TCNKHGVSGYPTLKIFRNGQV 120
K ++ PT K+++NG
Sbjct: 71 VTEKENITSMPTFKVYKNGSS 91
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 71.3 bits (175), Expect = 2e-17
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 31 DESSVLDLGD-SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
SV+D+ F ++++ + F A WCG CK ++ EK A + P + F
Sbjct: 17 RYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF----PTVKFA 72
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
KVD E +K V PT I R+G++
Sbjct: 73 KVDADNN-SEIVSKCRVLQLPTFIIARSGKM 102
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 70.4 bits (173), Expect = 3e-17
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+ + L D++F+ I LV F+A WCG C+ + P E+ A ++ K++
Sbjct: 1 ATMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLN- 56
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ ET ++ G+ PTL +F+ G+ K
Sbjct: 57 VDENPETTSQFGIMSIPTLILFKGGRPVKQL 87
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 70.4 bits (173), Expect = 3e-17
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
S+F++ I Q + +V FYA WCG CK + P EK + P F K+D E +
Sbjct: 14 ASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY----PQADFYKLDVDEL-GD 68
Query: 100 TCNKHGVSGYPTLKIFRNGQV 120
K+ VS PTL +F+NG+
Sbjct: 69 VAQKNEVSAMPTLLLFKNGKE 89
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 70.4 bits (173), Expect = 3e-17
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 33 SSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
+ +++ D +F+ + QH LV F+A WC C+ + P E+ A + +G + K+D
Sbjct: 1 AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLD 57
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ +T ++ V PT+ +F++GQ +
Sbjct: 58 -VDENPKTAMRYRVMSIPTVILFKDGQPVEVL 88
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 70.8 bits (174), Expect = 3e-17
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 40 DSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
D D E+++ QH+ LV+ F+A WCG CK + P +++ + FVKVD +
Sbjct: 21 DGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELS-----EKYDAIFVKVDVDKL- 74
Query: 98 KETCNKHGVSGYPTLKIFRNGQV 120
+ET K+ +S PT +NG+
Sbjct: 75 EETARKYNISAMPTFIAIKNGEK 97
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 70.0 bits (172), Expect = 5e-17
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 34 SVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
S+ L + FE + ++ + LVMF C C+K+ P E+ + + + F VD
Sbjct: 5 SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVD 61
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
E K + + G P + F++G+
Sbjct: 62 -VEEEKTLFQRFSLKGVPQILYFKDGEYKGKM 92
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 69.3 bits (170), Expect = 9e-17
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
V+ L +F++ + HE A+V F+A WC C L P E+ A D + F K++ +
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLN-S 55
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQV 120
+ + ++GV PT+ F++G+
Sbjct: 56 DENPDIAARYGVMSLPTVIFFKDGEP 81
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 69.2 bits (170), Expect = 9e-17
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 40 DSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
+D E +IN+++ L++ F+A WCG C+ + P+ E A ++ P + F KVD +
Sbjct: 7 AADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI----PEVEFAKVDVDQN- 61
Query: 98 KETCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
+E K+ V+ PT ++G+ S A +T+L
Sbjct: 62 EEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKL 96
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 69.8 bits (171), Expect = 1e-16
Identities = 13/96 (13%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 26 ALVSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPP 85
+L + + + + + ++MF C +C +++ E + + +G
Sbjct: 2 SLEGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG-KFN 60
Query: 86 ISFVKVDCTEAGKETCNKHGVSGYPTLKIF-RNGQV 120
I + +++ E + K+ + PT + G
Sbjct: 61 IYYARLE-EEKNIDLAYKYDANIVPTTVFLDKEGNK 95
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 69.3 bits (170), Expect = 1e-16
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 35 VLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
L L + +F+ VI ++ LV +A WC C +P Y+K A KG F +++
Sbjct: 6 TLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLN-V 61
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ ++ +K+ V PT IF NGQ+ +
Sbjct: 62 DENQKIADKYSVLNIPTTLIFVNGQLVDSL 91
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 69.7 bits (171), Expect = 1e-16
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 34 SVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
L S+ V ++ ++ F+A WC C E +K I +KVD
Sbjct: 25 PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVD 81
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ + K V PT+ + +N +
Sbjct: 82 -LDKNESLARKFSVKSLPTIILLKNKTM 108
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 69.5 bits (170), Expect = 2e-16
Identities = 9/91 (9%), Positives = 25/91 (27%), Gaps = 5/91 (5%)
Query: 32 ESSVLDLGDSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
+ S + I + +++ + + D
Sbjct: 16 TRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVA 73
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
D E + ++ V +P +F +G++
Sbjct: 74 VADL-EQSEAIGDRFNVRRFPATLVFTDGKL 103
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 68.5 bits (168), Expect = 2e-16
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 40 DSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
D DF+ ++ + L + F CG C ++ P + + P F++VD +
Sbjct: 9 DPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY----PQAVFLEVDVHQC- 63
Query: 98 KETCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
+ T + +S PT + FRN A L
Sbjct: 64 QGTAATNNISATPTFQFFRNKVRIDQYQGADAVGL 98
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 68.5 bits (168), Expect = 2e-16
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 32 ESSVLDLGD-SDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISF 88
SV + + F+ ++ LV+ F A WCG K +KP + + + F
Sbjct: 10 HGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIF 65
Query: 89 VKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
++VD + ++ ++ V PT + F+ GQ S A K +L
Sbjct: 66 LEVDVDDC-QDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKL 108
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 68.1 bits (167), Expect = 3e-16
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
FE + +V F A WC CK + P + + A P ++F+KVD E K
Sbjct: 16 KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF----PNVTFLKVDVDEL-KA 70
Query: 100 TCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
+ V PT ++G+ A K L
Sbjct: 71 VAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGL 103
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 70.3 bits (172), Expect = 3e-16
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 31 DESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
D+ ++ L +F+A +N E V FY+P C HC L P + + A +V G +
Sbjct: 95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGA 151
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQVS 121
V+C + + C GV+ YP+L IFR+G +
Sbjct: 152 VNCGDD-RMLCRMKGVNSYPSLFIFRSGMAA 181
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 67.7 bits (166), Expect = 4e-16
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 40 DSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
+ F+ ++ LV+ F A WCG CK +KP + + + F++VD +
Sbjct: 8 KTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDC- 62
Query: 98 KETCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
++ ++ V PT + F+ GQ S A K +L
Sbjct: 63 QDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKL 97
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 68.7 bits (168), Expect = 4e-16
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 32 ESSVLDLGD-SDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISF 88
++V ++G FE ++ +L++ F+APW C ++ + A ++ P +SF
Sbjct: 11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL----PQVSF 66
Query: 89 VKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
VK++ E E K+ +S PT F+N Q
Sbjct: 67 VKLE-AEGVPEVSEKYEISSVPTFLFFKNSQK 97
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 67.9 bits (166), Expect = 7e-16
Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 17/108 (15%)
Query: 32 ESSVLDLGD-SDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISF 88
+S ++L + V + + + ++ F A WC C K+K ++ ++
Sbjct: 19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN-----YYYVTL 73
Query: 89 VKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ--------VSKAKKTEL 128
V +D + ++H + PT + + N V A + ++
Sbjct: 74 VDIDVDIH-PKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDI 120
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 67.4 bits (165), Expect = 7e-16
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 40 DSDFEAVINQHET---ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96
F + ++ F+ W CK LK +E + + ++ +SF+ +D E
Sbjct: 8 QEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISN--EPSNSNVSFLSIDADEN 65
Query: 97 GKETCNKHGVSGYPTLKIFRNGQV 120
E +S P I G +
Sbjct: 66 -SEISELFEISAVPYFIIIHKGTI 88
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 66.9 bits (164), Expect = 8e-16
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 40 DSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
+D + + + LV+ F+A WCG CK + P+ + +T + +KVD E
Sbjct: 8 KADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC- 63
Query: 98 KETCNKHGVSGYPTLKIFRNGQV 120
++ ++ +S PT +NG
Sbjct: 64 EDIAMEYNISSMPTFVFLKNGVK 86
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 69.7 bits (170), Expect = 9e-16
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 43 FEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPP--ISFVKVDCTEAGKET 100
+ + + + A C C+ + ++ + A I KE
Sbjct: 15 AQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFT-HKEE 73
Query: 101 CNKHGVSGYPTLKIFRNGQ 119
K+GV PT+ I +
Sbjct: 74 TEKYGVDRVPTIVIEGDKD 92
Score = 60.5 bits (146), Expect = 2e-12
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 37 DLGDSDFEAVIN-QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
L + E + + +F CG+C P A D A+ I+ +D +E
Sbjct: 122 QLSEKTLELLQVVDIPIEIWVFVTTSCGYC----PSAAVMAWDFALANDYITSKVIDASE 177
Query: 96 AGKETCNKHGVSGYPTLKIFRNGQVSK 122
++ + V G P I N V++
Sbjct: 178 -NQDLAEQFQVVGVPK--IVINKGVAE 201
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 66.9 bits (164), Expect = 1e-15
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 33 SSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
V+ + D++FE+ V+ + LV F+A WCG C+ + P AA + VK+
Sbjct: 7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKL 63
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ + T K+ V G P L++ + Q+ +
Sbjct: 64 E-IDPNPTTVKKYKVEGVPALRLVKGEQILDST 95
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 66.5 bits (163), Expect = 1e-15
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 34 SVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
SV+++ D +FE V+ + LV F+APWCG C+ + P E+ A + +G + VKV+
Sbjct: 2 SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVN 58
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T ++G+ PTL +F+NGQV
Sbjct: 59 -VDENPNTAAQYGIRSIPTLLLFKNGQVVDRL 89
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 66.6 bits (163), Expect = 1e-15
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 33 SSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
++ + D FE V+ + LV F+A WCG C+++ P E A + I VK+
Sbjct: 5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKL 61
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ + T K+GV PTL +++ G+V+K
Sbjct: 62 N-IDENPGTAAKYGVMSIPTLNVYQGGEVAKTI 93
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 66.1 bits (162), Expect = 2e-15
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLN- 59
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNGEVAATK 90
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 66.7 bits (163), Expect = 2e-15
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 34 SVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
++ L D F+ V+ LV F+A WCG K + P ++ A + +G ++ K++
Sbjct: 23 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLN 79
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 80 -IDQNPGTAPKYGIRGIPTLLLFKNGEVAATK 110
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 65.7 bits (161), Expect = 2e-15
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 34 SVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
+ D F+ V+ LV F+APWCG C+ + P ++ A + K + VK++
Sbjct: 2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLN 58
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
T+ +++G+ PT+ +F+ G+ +
Sbjct: 59 -TDESPNVASEYGIRSIPTIMVFKGGKKCETI 89
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 66.2 bits (162), Expect = 2e-15
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 33 SSVLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
S+ + + D+ F V++ ++ LV F+A WCG CK + P E+ AT+ ++ K+
Sbjct: 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKL 68
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
D + ET V PTL +F++GQ K
Sbjct: 69 D-VDTNPETARNFQVVSIPTLILFKDGQPVKRI 100
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 65.7 bits (161), Expect = 2e-15
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
V D+ DS ++ V+ +V F+APWCG CK + P ++ A + G I+ K++
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLN- 57
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
T+ ++ + PT+ F+NG+ ++
Sbjct: 58 TDEAPGIATQYNIRSIPTVLFFKNGERKESI 88
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 65.8 bits (161), Expect = 2e-15
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
L + DS F+ V+ LV F+A WCG CK + P + + G ++ KV+
Sbjct: 4 TLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVN- 59
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ ET N + V PTL + R+G+V K
Sbjct: 60 IDDNPETPNAYQVRSIPTLMLVRDGKVIDKK 90
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 65.4 bits (160), Expect = 4e-15
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 40 DSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK 98
DF+ V+N +V F+A WCG CK L P EK G + KVD +
Sbjct: 20 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVD-IDDHT 75
Query: 99 ETCNKHGVSGYPTLKIFRNGQV 120
+ ++ VS PT+ +NG V
Sbjct: 76 DLAIEYEVSAVPTVLAMKNGDV 97
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 67.5 bits (165), Expect = 4e-15
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
++ L D F+ V+ LV F+A WCG CK + P ++ A + +G ++ K++
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLN- 69
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ T K+G+ G PTL +F+NG+V+ K
Sbjct: 70 IDQNPGTAPKYGIRGIPTLLLFKNGEVAATK 100
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 65.0 bits (159), Expect = 5e-15
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ + D+DF++ + LV F+A CG CK + P E+ A D +G +K+D
Sbjct: 4 AIVKVTDADFDSKVES-GVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLD- 58
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ T K+ V PTL +F++GQ
Sbjct: 59 VDENPSTAAKYEVMSIPTLIVFKDGQP 85
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 65.1 bits (159), Expect = 6e-15
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
+ + +V F A WCG C+ + P + A + F+KVD E K
Sbjct: 28 NEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL----FLKVDTDEL-KS 82
Query: 100 TCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
+ + PT + G+ V AKK EL
Sbjct: 83 VASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 115
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 65.1 bits (159), Expect = 6e-15
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
E + ++ F A WCG C+ + P + A A F+KVD E K
Sbjct: 24 TMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNA----VFLKVDVDEL-KP 78
Query: 100 TCNKHGVSGYPTLKIFRNGQV 120
+ V PT + G V
Sbjct: 79 IAEQFSVEAMPTFLFMKEGDV 99
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 65.3 bits (159), Expect = 7e-15
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 32 ESSVLDLGDSDFEAVINQHE--TALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
+ D + + + + T +V F+A W C+ P Y + ++F
Sbjct: 6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFG 63
Query: 90 KVDCTEAGKETCNKHGVS------GYPTLKIFRNGQV 120
KVD + ++ VS PTL +F+ G+
Sbjct: 64 KVDVGRYT-DVSTRYKVSTSPLTKQLPTLILFQGGKE 99
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 64.7 bits (158), Expect = 9e-15
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 31 DESSVLDLG-DSDFEAVINQHETA----LVMFYAPWCGHCKKLKPEYEKAATDVKGADPP 85
+E +V+ +F+ + + ++ F A WCG C+ + P + + A GA
Sbjct: 4 EEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGA--- 60
Query: 86 ISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
F+KVD E K+ + V PT ++G+ V +K ++
Sbjct: 61 -IFLKVDVDEL-KDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDI 105
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 64.7 bits (158), Expect = 1e-14
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 40 DSDFEAVINQHETA----LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
+F+A + + + A ++ F A WCG C+ + P + + A GA F+KVD E
Sbjct: 22 KDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGA----VFLKVDVDE 77
Query: 96 AGKETCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
KE K+ V PT ++G V A+K +L
Sbjct: 78 L-KEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 113
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 64.9 bits (158), Expect = 1e-14
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 32 ESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
+ D + E + A+V FYA WCG CK + P E+ + + G I KV
Sbjct: 33 LKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKV 89
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ + E G+ PT+ +
Sbjct: 90 N-VDKEPELARDFGIQSIPTIWFVPMKGEPQVN 121
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 63.9 bits (156), Expect = 1e-14
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 40 DSDFEAVINQHETA----LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
+ ++A + + + +V F A WCG CK + P +E + D G + F+KVD
Sbjct: 10 KAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDA 66
Query: 96 AGKETCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
G++ PT ++++G + A + +L
Sbjct: 67 V-AAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKL 102
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 63.5 bits (155), Expect = 2e-14
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 34 SVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC 93
+++ D F A ++ L F+APWCG K + P E+ ++ + VK+D
Sbjct: 2 AIVKATDQSFSAETSE-GVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKID- 56
Query: 94 TEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+ +ET K+GV PTL + ++G+V +
Sbjct: 57 VDENQETAGKYGVMSIPTLLVLKDGEVVETS 87
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 64.0 bits (156), Expect = 2e-14
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
D + L F A WCG +++ P Y + + + P + F+ +D E +
Sbjct: 36 DQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY----PSLMFLVIDVDEL-SD 90
Query: 100 TCNKHGVSGYPTLKIFRNGQ----VSKAKKTEL 128
+ PT R+GQ + A K EL
Sbjct: 91 FSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 63.3 bits (154), Expect = 4e-14
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 40 DSDFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE-- 95
+ + + + VM YA WC CK+ + V+ A ++ + T
Sbjct: 19 VDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDP-QVQKALADTVLLQANVTAND 77
Query: 96 -AGKETCNKHGVSGYPTLKIF-RNGQVSKAKKTE 127
V G PT+ F GQ +
Sbjct: 78 AQDVALLKHLNVLGLPTILFFDGQGQEHPQARVT 111
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 62.4 bits (152), Expect = 5e-14
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 40 DSDFEAVINQHET-ALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK 98
I + LV F+A WCG C++L A ++F+KVD +
Sbjct: 12 HEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN----KDVTFIKVDVDKN-G 66
Query: 99 ETCNKHGVSGYPTLKIFRNG--------QVSKAKKTEL 128
+ +GVS P L + Q A + +
Sbjct: 67 NAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRI 104
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 61.5 bits (150), Expect = 6e-14
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+ +F +P C HC K E+ A ++ A + ++ E + ++G+ PT+
Sbjct: 6 IELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMENP-QKAMEYGIMAVPTIV 61
Query: 114 IFRNGQV 120
I + +
Sbjct: 62 INGDVEF 68
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 62.5 bits (152), Expect = 1e-13
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 32 ESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
+ V + + E + A+V FYA WCG CK + P ++ A + G I KV
Sbjct: 20 LAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKV 76
Query: 92 DCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
D TE +E G+ P++ +
Sbjct: 77 D-TEKEQELAGAFGIRSIPSILFIPMEGKPEMA 108
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 61.7 bits (150), Expect = 1e-13
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 28 VSCDESSVLDLGDSDFEAVINQHETA----LVMFYAPWCGHCKKLKPEYEKAATDVKGAD 83
+S ++ + + F + + E V + WCG CK+L K + +
Sbjct: 1 MSLAQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN 60
Query: 84 PPISFVKVDCTEA-GKETCNKHGVSGYPTLKIFR-NGQV 120
+K+D + G E K+GV YPTL +G+V
Sbjct: 61 RHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEV 99
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 60.0 bits (146), Expect = 2e-13
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+ +F +P C +C ++A + I K+D +E ++G+ P +
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMV-DREKAIEYGLMAVPAIA 60
Query: 114 IFRNGQV 120
I NG V
Sbjct: 61 I--NGVV 65
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 62.4 bits (151), Expect = 4e-13
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 37 DLGDSDFEAVIN-QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPP-ISFVKVDCT 94
+L D +A+ N + +++F P C +C K A + A I V+
Sbjct: 120 NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI 179
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQV 120
E E +++ V P + I NG+
Sbjct: 180 EY-PEWADQYNVMAVPKIVIQVNGED 204
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 60.0 bits (145), Expect = 5e-13
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 41 SDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET 100
+ +++ ETA C +C+K + K I F+ + +
Sbjct: 20 VRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKA---HIYFINSEEPSQLNDL 76
Query: 101 ---CNKHGVSGYPTLKIFRNGQVSK 122
+++G+ P +GQ++
Sbjct: 77 QAFRSRYGIPTVPGFVHITDGQINV 101
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 60.0 bits (145), Expect = 9e-13
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 42 DFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
+ + I +++ F C +L K ++D+ + VD +
Sbjct: 13 EVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQT-AV 68
Query: 100 TCNKHGVSGYPTLKIFRNGQV 120
+S P+ F NGQ
Sbjct: 69 YTQYFDISYIPSTVFFFNGQH 89
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 58.2 bits (141), Expect = 2e-12
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 34 SVLDLGDSDFEAVINQHE---TALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+ ++ + + + E ++ Y C + A P FVK
Sbjct: 4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF----PETKFVK 59
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ + PT+ +++NGQ+
Sbjct: 60 AIVNSC----IQHYHDNCLPTIFVYKNGQI 85
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 58.2 bits (141), Expect = 3e-12
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 35 VLDLGDSDFEA-VINQHETALVMFYAPWCG--------------HCKKLKPEYEKAATDV 79
++ L D F+ V+ LV F+A WCG CK + P ++ A +
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 80 KGADPPISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQVSKAK 124
+G ++ K++ + T K+G+ G PTL +F+NG+V+ K
Sbjct: 65 QGK---LTVAKLN-IDQNPGTAPKYGIRGIPTLLLFKNGEVAATK 105
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 56.7 bits (136), Expect = 8e-12
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 41 SDFEAVINQH--ETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGK 98
S + H + M+ A WC HC+ K + A V V+C+ G
Sbjct: 1 SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGP 51
Query: 99 ET-----CNKHGVSGYPTLKIFRNGQV 120
T C + G++ YPT I NG+
Sbjct: 52 GTPQAQECTEAGITSYPTWII--NGRT 76
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 57.2 bits (138), Expect = 8e-12
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 34 SVLDLGDSDFEAVINQHE---TALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVK 90
+ ++ + + + E ++ Y C + A P FVK
Sbjct: 11 ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF----PETKFVK 66
Query: 91 VDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
+ + PT+ +++NGQ+
Sbjct: 67 AIVNSC----IEHYHDNCLPTIFVYKNGQI 92
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 52.0 bits (123), Expect = 4e-09
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 50 HETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET-----CNKH 104
+ M+ A WC HC+ K + A V+C+ G T C +
Sbjct: 197 RQIGGTMYGAYWCPHCQDQKELFGAAF---------DQVPYVECSPNGPGTPQAQECTEA 247
Query: 105 GVSGYPTLKIFRNGQ 119
G++ YPT I NG+
Sbjct: 248 GITSYPTWII--NGR 260
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 51.6 bits (123), Expect = 4e-09
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 34 SVLDLGDSD--FEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
V +L + E + + + ++ Y C L A + P + F
Sbjct: 113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEY----PMVKFC 168
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
K+ + G ++ PTL +++ G++
Sbjct: 169 KIKASNTG--AGDRFSSDVLPTLLVYKGGEL 197
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 49.7 bits (119), Expect = 5e-09
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 17/85 (20%)
Query: 40 DSDFEAVINQHETALVMFYAPWCGHCKKLK------PEYEKAATDVKGADPPISFVKVDC 93
+V F++ C +C+++ P + FV
Sbjct: 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR--------FVVASV 60
Query: 94 T---EAGKETCNKHGVSGYPTLKIF 115
+ G+E ++ V G PT
Sbjct: 61 SVDTPEGQELARRYRVPGTPTFVFL 85
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 50.1 bits (119), Expect = 8e-09
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V+ + WCG CK LKP++ ++ ++ V ++ E K+ P +
Sbjct: 50 MVIIHKSWCGACKALKPKFAEST-EISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRIL 108
Query: 114 IF-RNGQV 120
+G+V
Sbjct: 109 FLDPSGKV 116
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 49.8 bits (118), Expect = 2e-08
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 21 LVLGFALVSCDESSVLDLGDSDFEAVIN-QHETALVMFYAPWCGHCKKLKPEYEKAATDV 79
LV +S DES L D+ EA+ + + + P C +C A +
Sbjct: 111 LVEVIMRLSEDES---GLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEA 167
Query: 80 KGADPP-ISFVKVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
P I V+ E + +K+GV P+ I NG +
Sbjct: 168 WKQGNPVILSEAVEAYE-NPDIADKYGVMSVPS--IAINGYL 206
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 48.1 bits (114), Expect = 2e-08
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 51 ETALVMFYAPWCGHCKKLKPE----YEKAATDVKGADPPISFVKVDCTEAGKETCNKHGV 106
E L+MF P C +C + E Y +G P+ +++ + V
Sbjct: 19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTD---EGRAAPVQRLQMRDPLPPGLELAR-PV 74
Query: 107 SGYPTLKIFRNGQ 119
+ PT +
Sbjct: 75 TFTPTFVLMAGDV 87
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 46.9 bits (111), Expect = 2e-07
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 34 SVLDLGDSD--FEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
V +L + E + + + ++ Y C L E A + P + F
Sbjct: 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY----PMVKFC 155
Query: 90 KVDCTEAGKETCNKHGVSGYPTLKIFRNGQV 120
K+ + G ++ PTL +++ G++
Sbjct: 156 KIRASNTG--AGDRFSSDVLPTLLVYKGGEL 184
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 44.9 bits (106), Expect = 4e-07
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 43 FEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT--EAGKET 100
A H+ L++F A WC C+ L + VK+D + E
Sbjct: 22 LAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQK-NTALIAKHFEVVKIDVGNFDRNLEL 80
Query: 101 CNKHGV---SGYPTLKIF-RNGQVSKAKKT 126
+G G P + + +G+V K
Sbjct: 81 SQAYGDPIQDGIPAVVVVNSDGKVRYTTKG 110
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 37.3 bits (86), Expect = 3e-04
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
+V+ + C + + LK + + + A + + K N Y
Sbjct: 48 MVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDK---NLSPDGQYVPRI 104
Query: 114 IFRNGQ 119
+F +
Sbjct: 105 MFVDPS 110
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 36.9 bits (86), Expect = 4e-04
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKA 75
++ FY P C +C+K + + +
Sbjct: 31 MLFFYDPDCSNCRKFEKLFAEI 52
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 36.6 bits (85), Expect = 5e-04
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKA 75
L+ P C C ++ + +
Sbjct: 35 LLFINNPGCHACAEMIEGLKAS 56
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 36.0 bits (83), Expect = 8e-04
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC-TEAGKETCNKHGVSGYPTL 112
++ C+ L + F +V +E G+ + + +P +
Sbjct: 46 MINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV 105
Query: 113 KIF--RNGQVSK 122
I R GQ
Sbjct: 106 SILDPRTGQKLV 117
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 36.1 bits (83), Expect = 0.001
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 40 DSDFEAVINQHETALVMF-YAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE--- 95
E H+ + F + WC C K++ + +++ A + V+VD +
Sbjct: 37 AEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNH 96
Query: 96 -------AGKETCNKHGVSGYPTLKIF 115
+E ++ V+G+P L
Sbjct: 97 QPEEQRQKNQELKAQYKVTGFPELVFI 123
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 35.1 bits (80), Expect = 0.002
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 39 GDSDFEAVINQH--ETALVMFYA-------PWCGHCKKLKPEYEKAATDVKGADPPISFV 89
G +F + QH +T F WC C + +P + + +
Sbjct: 11 GFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS-EGCVFIYC 69
Query: 90 KVDCTEAGKETCNKH----GVSGYPTLKIFRNGQ 119
+V K+ N V+ PTL + Q
Sbjct: 70 QVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQ 103
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 35.0 bits (80), Expect = 0.003
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 31 DESSVLDLGDSDFEAVINQHE--TALVMFYAPW-------CGHCKKLKPEYEKAATDVKG 81
D++ V+ + ++ + ++ C C + Y A ++
Sbjct: 16 DDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRS 75
Query: 82 ADP--PISFVKVDCTEAGKETCNKHGVSGYPTLKIF 115
P F VD E + + P L ++
Sbjct: 76 QAPQSLNLFFTVDVNE-VPQLVKDLKLQNVPHLVVY 110
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 34.6 bits (80), Expect = 0.003
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKA 75
++ F+ CGHC++ P+
Sbjct: 35 ILFFWDSQCGHCQQETPKLYDW 56
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 32.7 bits (74), Expect = 0.015
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 38 LGDSDFEAVINQHETALVMFYAP---WCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT 94
+ ++ + I +V+F+ L + G + +V
Sbjct: 20 VDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAA- 75
Query: 95 EAGKETCNKHGVSGYPTLKIFRNGQV 120
EA + + GV+ P+L + + +
Sbjct: 76 EAERGLMARFGVAVCPSLAVVQPERT 101
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 32.8 bits (75), Expect = 0.015
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTL 112
+V +A WCG C+K P K K + + +D ++ + VS YP
Sbjct: 28 IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVS-YPIW 85
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 32.3 bits (74), Expect = 0.018
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV---DCTEAGKETCNKHGVSGYP 110
++ F+APWC C+ P + A ++FV V D A +E NK+ V +
Sbjct: 29 VLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPVKTFT 84
Query: 111 TLKIFRNGQVSKA 123
L +G V
Sbjct: 85 QL-ADTDGSVWAN 96
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 32.3 bits (74), Expect = 0.018
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC---TEAGKETCNKHGVSGYP 110
+ +A WCG C+ P ++ G D I FV + C +A + K + G
Sbjct: 34 YIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWENMVTKDQLKGIQ 91
Query: 111 TLKIFRNGQVSKA 123
+ A
Sbjct: 92 LHM-GTDRTFMDA 103
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 31.9 bits (73), Expect = 0.025
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC---TEAGKETCNKHGVSGYP 110
++ F A WCG C+K P EK + + + +D E GV+ YP
Sbjct: 37 MLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVT-YP 95
Query: 111 TLKIFRNGQVSKA 123
+ +
Sbjct: 96 LG-LDPGADIFAK 107
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 31.9 bits (73), Expect = 0.025
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE---AGKETCNKHGVSGYP 110
++ F+ PWC C P + A ++FV + A + +K+ ++ +
Sbjct: 28 VLWFWTPWCPFCNAEAPSLSQVAAANPA----VTFVGIATRADVGAMQSFVSKYNLN-FT 82
Query: 111 TLKIFRNGQVSKA 123
L +G +
Sbjct: 83 NL-NDADGVIWAR 94
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 31.9 bits (73), Expect = 0.026
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSGYPTLK 113
LV F+A WC +C+ P ++ D + + V+ + E + VS + L
Sbjct: 45 LVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPEKYRRAPVS-FNFL- 100
Query: 114 IFRNGQVSKA 123
GQV +
Sbjct: 101 SDATGQVQQR 110
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.035
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 29/124 (23%)
Query: 2 ELPWSSGHVLCSLIRSNLMLVL-GF--ALVSCDESSVLDLGDSDFEAVINQHET------ 52
LP + V SL+ LV+ G +L L L + + ++Q
Sbjct: 359 HLP-AGKQVEISLVNGAKNLVVSGPPQSLYGL----NLTLRKAKAPSGLDQSRIPFSERK 413
Query: 53 -ALVMFY----APWCGHCKKLKPEYEKAATDVKGADPPISF------VKVDCTEAGKETC 101
+ +P+ H L P + D+ + +SF + V T G +
Sbjct: 414 LKFSNRFLPVASPF--HSHLLVPASDLINKDLVKNN--VSFNAKDIQIPVYDTFDGSDLR 469
Query: 102 NKHG 105
G
Sbjct: 470 VLSG 473
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 31.6 bits (71), Expect = 0.039
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 40 DSDFEAVINQHETALVMFYAPWCGHCKKLKPEY 72
D E ++ ++ F C +C+K++
Sbjct: 37 DLGMEYARQHNKPVMLDFTGYGCVNCRKMELAV 69
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 31.2 bits (71), Expect = 0.042
Identities = 7/75 (9%), Positives = 18/75 (24%), Gaps = 7/75 (9%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC---TEAGKETCNKHGVSGYP 110
L+ F+A + + + I+ + ET +
Sbjct: 36 LLNFWAAYDAESRARNVQLANEVNKFG--PDKIAMCSISMDEKESIFTETVKIDKLDLST 93
Query: 111 TLKIF--RNGQVSKA 123
+ ++ K
Sbjct: 94 QFHEGLGKESELYKK 108
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 30.4 bits (69), Expect = 0.048
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 44 EAVINQHETALVMFYAPWCGHCKKLK 69
V ++M+ C CKK K
Sbjct: 14 NHVSGVDRGKVIMYGLSTCVWCKKTK 39
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 30.9 bits (70), Expect = 0.059
Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 31/125 (24%)
Query: 21 LVLGFALVSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVK 80
+ G LV + V + + + F A WC C+ P +++
Sbjct: 3 FIQGIKLVKKNRCEV------NANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELV 56
Query: 81 GADPPISFVKVDC------------------------TEAGKETCNKHGVSGYPTLKIF- 115
P + V + K+G++G P L I
Sbjct: 57 DDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVK 116
Query: 116 RNGQV 120
++G +
Sbjct: 117 KDGTL 121
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 30.9 bits (70), Expect = 0.067
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVS-----G 108
L+ F+A WC C + EK A D K + + + V E +
Sbjct: 42 LIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYAGLN 99
Query: 109 YPTLKIF--RNGQVSKA 123
YP L + G +++
Sbjct: 100 YPKLPVVTDNGGTIAQN 116
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 30.8 bits (69), Expect = 0.069
Identities = 9/87 (10%), Positives = 23/87 (26%), Gaps = 11/87 (12%)
Query: 38 LGDSDFEAVINQHETALVMFY--APWCGHCKKLK---PEYEKAATDVKGADPPISFVKVD 92
+ +S + + Q +V+ E ++ +
Sbjct: 22 VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP---DYTWQVAIADL- 77
Query: 93 CTEAGKETCNKHGVSGYPTLKIFRNGQ 119
E + ++ G +P +F G
Sbjct: 78 --EQSEAIGDRFGAFRFPATLVFTGGN 102
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 30.5 bits (68), Expect = 0.10
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
++ F++ +C HC + + + K + K
Sbjct: 117 VLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKY 154
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 30.1 bits (68), Expect = 0.14
Identities = 7/78 (8%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKG----ADPPISFVKVDCTEAGKET----CNKHG 105
++ + WC C+ + + +++ P + + ++ + ++ +G
Sbjct: 63 ILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNG 122
Query: 106 VSGYPTLKIFRNGQVSKA 123
+ YP++ + +
Sbjct: 123 LD-YPSI-YDPPFMTAAS 138
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 29.8 bits (67), Expect = 0.15
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEA 96
++ F A WC C + ++ + IS + +D A
Sbjct: 41 ILWFMAAWCPSCVYMADLLDRLTEKYRE----ISVIAIDFWTA 79
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A
{Salmonella enterica subsp}
Length = 189
Score = 29.6 bits (65), Expect = 0.21
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
+V F++ +C C VK
Sbjct: 18 VVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYH 56
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 29.4 bits (65), Expect = 0.23
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 42 DFEAVINQHETALVM--FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKE 99
+ I + LV F + C K+ K A D+K VD TE +
Sbjct: 31 AVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEV-PD 86
Query: 100 TCNKHGVSGYPTLKIFRNGQVSKAK 124
+ + ++ F +
Sbjct: 87 FNTMYELYDPVSVMFFYRNKHMMID 111
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 28.8 bits (65), Expect = 0.28
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET----CNKHGVSGY 109
++ F+ WC CKK P+++ + V + +E ++ + ++ +
Sbjct: 38 ILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLT-F 96
Query: 110 PTLKIFRNGQVSKA 123
P + + G++ K
Sbjct: 97 PIV-LDSKGELMKE 109
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 29.2 bits (65), Expect = 0.35
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET 100
L+ F+A C +C++ P K D ++ + V E E
Sbjct: 86 LIDFWAYSCINCQRAIPHVVGWYQAYK--DSGLAVIGVHTPEYAFEK 130
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 28.8 bits (65), Expect = 0.36
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
L+ F+A WC + E ++ + K + + + +
Sbjct: 37 LLNFWASWCDPQPEANAELKRLNKEYKK-NKNFAMLGISLDI 77
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 28.8 bits (65), Expect = 0.36
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET----CNKHGVSGY 109
L+ F+ P C C P+ K A D K + + V E+ +G+ +
Sbjct: 32 LINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESVRQYVKDYGLP-F 88
Query: 110 PTLKIFRNGQVSKA 123
+ + V +A
Sbjct: 89 TVM-YDADKAVGQA 101
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 28.8 bits (64), Expect = 0.40
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 54 LVMFYAPWCGHCKKLKPEYEK 74
++ F+A C HC ++P E
Sbjct: 29 VLEFFAYTCPHCAAIEPMVED 49
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 28.4 bits (64), Expect = 0.41
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT---EAGKETCNKHGVSGYP 110
LV F+ C C+K P K K D + V E K+ +
Sbjct: 33 LVDFWFAGCSWCRKETPYLLKTYNAFK--DKGFTIYGVSTDRREEDWKKAIEEDKSYWNQ 90
Query: 111 TL-KIFRNGQVSKA 123
L + V ++
Sbjct: 91 VLLQKDDVKDVLES 104
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 28.4 bits (64), Expect = 0.48
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKET 100
+V F+A WC C++ P + + G + V E GK
Sbjct: 32 IVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVA 76
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 28.5 bits (63), Expect = 0.53
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 54 LVMFYAPWCGHCKKLKPEYEK 74
+V + C HC + +
Sbjct: 29 VVEIFGYTCPHCAHFDSKLQA 49
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 28.3 bits (62), Expect = 0.66
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAG 97
F++ +C HC + + + K K G
Sbjct: 28 FFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLG 68
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 27.8 bits (61), Expect = 0.77
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKV 91
+V + C HC +P + + FV++
Sbjct: 29 VVELFWYGCPHCYAFEPTIVPW---SEKLPADVHFVRL 63
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 27.7 bits (62), Expect = 0.77
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC---TEAGKETCNKHGVSGYP 110
+++F+A WC CK P + A + P + + E E + P
Sbjct: 34 VIVFWASWCTVCKAEFPGLHRVA---EETGVPFYVISREPRDTREVVLEYMKTYPRF-IP 89
Query: 111 TLKIF--RNGQVSKA 123
L R +V+
Sbjct: 90 LLASDRDRPHEVAAR 104
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain
700825 / FA 1090), DSBC, structural genomics, unknown
funct 2; 2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 27.7 bits (61), Expect = 0.79
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATD 78
+ +F P C CK+L+ E+EK
Sbjct: 18 VAVFSDPDCPFCKRLEHEFEKMTDV 42
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 27.7 bits (61), Expect = 0.85
Identities = 7/69 (10%), Positives = 19/69 (27%), Gaps = 3/69 (4%)
Query: 49 QHETALVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETCNKHGVSG 108
+ L++ WC C+ + A + ++ + E
Sbjct: 53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIE--LAIISKGRAEDDLRQRLALERIA 110
Query: 109 YPTLKIFRN 117
P + + +
Sbjct: 111 IPLV-LVLD 118
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 27.9 bits (61), Expect = 0.89
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 38 LGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEK 74
L Q + + +F CG+C KL +
Sbjct: 74 LEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEQMAD 110
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like,
NEW YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 27.7 bits (62), Expect = 0.90
Identities = 2/22 (9%), Positives = 4/22 (18%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKA 75
L+ F +
Sbjct: 39 LIDFTVYNNAMSAAHNLALREL 60
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 27.2 bits (61), Expect = 1.00
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 57 FYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCT-----EAGKETCNKHGVSGYPT 111
F+A WC C P+ ++ A + ++ V K P
Sbjct: 29 FWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPV 88
Query: 112 LKIFRNGQVSKA 123
L + +G++ +
Sbjct: 89 L-VDPSGKLLET 99
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 26.4 bits (59), Expect = 1.1
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 13/68 (19%)
Query: 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE--AGKETCNKHGVSGYPTL 112
++ P C C K A D G +++ VD + ++ G P
Sbjct: 4 TLYTKPACVQCTAT-----KKALDRAG----LAYNTVDISLDDEARDYVMALGYVQAPV- 53
Query: 113 KIFRNGQV 120
+ +G+
Sbjct: 54 -VEVDGEH 60
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58}
PDB: 3dvw_A 3a3t_A
Length = 193
Score = 27.4 bits (60), Expect = 1.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 54 LVMFYAPWCGHCKKLKPEYEK 74
++ F+ +C HC L+P K
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSK 48
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 26.1 bits (58), Expect = 1.4
Identities = 9/68 (13%), Positives = 16/68 (23%), Gaps = 13/68 (19%)
Query: 55 VMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE--AGKETCNKHGVSGYPTL 112
++ C C K A + +G F ++ E G P
Sbjct: 4 TIYTRNDCVQCHAT-----KRAMENRG----FDFEMINVDRVPEAAEALRAQGFRQLPV- 53
Query: 113 KIFRNGQV 120
+
Sbjct: 54 -VIAGDLS 60
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR
{Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 26.9 bits (60), Expect = 1.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAA 76
L+ F++ C CK+ P+ +
Sbjct: 33 LIHFWSISCHLCKEAMPQVNEFR 55
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria
meningitidis serogroup B} PDB: 3dvx_A
Length = 195
Score = 27.1 bits (59), Expect = 1.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 54 LVMFYAPWCGHCKKLKPEYEK 74
++ F+ +C HC P K
Sbjct: 26 VLEFFGYFCVHCHHFDPLLLK 46
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 27.0 bits (60), Expect = 1.6
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE---AGKETCNKHGVSGYP 110
+V F+A WC C+ P+ + +FV + E K G+ YP
Sbjct: 38 IVNFFATWCPPCRSEIPDMVQVQKTWA--SRGFTFVGIAVNEQLPNVKNYMKTQGII-YP 94
Query: 111 TL 112
+
Sbjct: 95 VM 96
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 27.0 bits (59), Expect = 1.7
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 54 LVMFYAPWCGHCKKLKPEYEK 74
+ F++ +C HC +P +
Sbjct: 22 VSEFFSFYCPHCNTFEPIIAQ 42
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 26.7 bits (59), Expect = 1.7
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 2/72 (2%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADP-PISFVKVDCT-EAGKETCNKHGVSGYPT 111
F A WC C+ P+ + + I D + K P
Sbjct: 52 FFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPF 111
Query: 112 LKIFRNGQVSKA 123
++K
Sbjct: 112 ANRNIVEALTKK 123
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 26.6 bits (59), Expect = 1.9
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 4/73 (5%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC---TEAGKETCNKHGVSGYP 110
F A WC + P+ + V + K P
Sbjct: 32 FFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVP 90
Query: 111 TLKIFRNGQVSKA 123
+ ++SK
Sbjct: 91 FAQSEAVQKLSKH 103
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein;
HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10
PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A
3c71_A 3c73_A
Length = 151
Score = 26.5 bits (59), Expect = 1.9
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTE 95
+ F+ WC CKK P K + V V+ E
Sbjct: 30 FLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGE 69
>3gl3_A Putative thiol:disulfide interchange protein DSBE;
oxidoreductase, PSI-II, structural genomics, protein
structure initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 26.5 bits (59), Expect = 2.1
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVD 92
+ F+A WCG C++ P + K + V +D
Sbjct: 32 YLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLD 70
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 26.3 bits (58), Expect = 2.7
Identities = 10/84 (11%), Positives = 16/84 (19%), Gaps = 22/84 (26%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADP----------------------PISFVKV 91
F A WC + P+ P +
Sbjct: 32 FFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF 91
Query: 92 DCTEAGKETCNKHGVSGYPTLKIF 115
+ + + V PTL
Sbjct: 92 EDRKGMEFLTTGFDVKSIPTLVGV 115
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 26.2 bits (57), Expect = 3.2
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 26 ALVSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCKKLKPEYEKAATDVK 80
++S L G D ++ +F P+C +CK+ + K
Sbjct: 80 MWQRMEQSHWLLDGKKDAPVIV-------YVFADPFCPYCKQFWQQARPWVDSGK 127
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 25.8 bits (57), Expect = 3.7
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 54 LVMFYAPWCGHCKKLK--PEYEKAATDVKGADPPISFVKVDCTE 95
L+ F+A W + + E + K + I + +
Sbjct: 37 LINFWASWNDSISQKQSNSELREIYKKYKK-NKYIGMLGISLDV 79
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 25.7 bits (57), Expect = 3.8
Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 4/73 (5%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDC---TEAGKETCNKHGVSGYP 110
+ F A WC C+ P + V + + K P
Sbjct: 32 FLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLISWDENESDFHDYYGKMPWLALP 90
Query: 111 TLKIFRNGQVSKA 123
+ ++ K
Sbjct: 91 FDQRSTVSELGKT 103
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 25.9 bits (57), Expect = 3.9
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFVKVDCTEAGKETC----NKHGVSGY 109
LV +A WC C+K P ++ + G + V ++ E + ++
Sbjct: 64 LVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLKEANLTRL 121
Query: 110 PTL 112
Sbjct: 122 GYF 124
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 25.7 bits (55), Expect = 4.8
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 54 LVMFYAPWCGHCKKLKPEYEK 74
+ +A CGHC+ ++
Sbjct: 26 VTEVFALSCGHCRNMENFLPV 46
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6,
oxidoreductase; HET: GSH; 1.50A {Saccharomyces
cerevisiae}
Length = 127
Score = 25.0 bits (55), Expect = 5.4
Identities = 4/27 (14%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 43 FEAVINQHETALVMFYAPWCGHCKKLK 69
+ +++ +++F C + K +K
Sbjct: 7 YSLILDLS--PIIIFSKSTCSYSKGMK 31
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
periplasm, redox-active center, oxidoreductase; HET:
PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Length = 195
Score = 25.3 bits (54), Expect = 5.8
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 8/55 (14%)
Query: 42 DFEAVINQHETA---LVMFYAPWCGHCKKLKPEY-----EKAATDVKGADPPISF 88
D+ + A L+ ++ C C K EK V +
Sbjct: 6 DYMVLEKPIPNADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLET 60
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel
fold, PSI, protein structu initiative; 1.70A
{Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A
1tlb_A 1tk1_A
Length = 328
Score = 25.3 bits (56), Expect = 6.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 98 KETCNKHGVSGYPTLK 113
K+ +KH + YP K
Sbjct: 175 KDALDKHDTALYPRFK 190
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein
structure initiative, structural genomics of pathogenic
protozoa consortium; 1.40A {Leishmania major} SCOP:
d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Length = 309
Score = 25.2 bits (56), Expect = 7.1
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 98 KETCNKHGVSGYPTLK 113
++ C G Y K
Sbjct: 158 QDLCKPFGADVYARFK 173
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 24.9 bits (55), Expect = 8.0
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 25 FALVSCDESSVLDLGDSDFEAVINQHETALVMFYAPWCGHCK 66
AL + ++ + + + +LV +A WC C
Sbjct: 17 TALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCH 58
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold,
reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter
pylori}
Length = 273
Score = 25.0 bits (53), Expect = 8.4
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVK 80
L + P C HC+K + +
Sbjct: 151 LYIVSDPMCPHCQKELTKLRDHLKENT 177
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet
sandwiched by helices, oxidoreductase; HET: CIT; 1.58A
{Homo sapiens}
Length = 346
Score = 24.9 bits (55), Expect = 8.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 98 KETCNKHGVSGYPTLK 113
KE C++HG YP K
Sbjct: 193 KEACDQHGPDLYPKFK 208
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter
pomeroyi}
Length = 175
Score = 24.6 bits (54), Expect = 8.6
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 54 LVMFYAPWCGHCKKLKPEYEKAATDVKGADPPISFV 89
+V F+ C +C++ E + DP + V
Sbjct: 26 VVEFFDYNCPYCRRAMAEVQGLVDA----DPNVRLV 57
>1kte_A Thioltransferase; redox-active center, electron transport,
acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB:
1jhb_A 1b4q_A*
Length = 105
Score = 24.5 bits (54), Expect = 8.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 55 VMFYAPWCGHCKKLK 69
V+F P C C+K +
Sbjct: 15 VVFIKPTCPFCRKTQ 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.415
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,881,588
Number of extensions: 98646
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 204
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)