RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9108
         (98 letters)



>gnl|CDD|185177 PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein
           SteC; Provisional.
          Length = 257

 Score = 28.2 bits (62), Expect = 0.66
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 16  TTQPANENRGKFLVRIVAIKAGVHKEHSWVTK 47
           T Q A + R KF  R VA+   V K H W TK
Sbjct: 127 TLQLALQTRIKFFYRPVAVARQVDKTHPWQTK 158


>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
           inhibitor.
          Length = 553

 Score = 25.6 bits (56), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 15  VTTQPANENRGKFLVRIVAIKAGVHKE 41
           V   P N    KF++R   IK GV++E
Sbjct: 260 VNAAPDNNGDRKFVIR---IKEGVYEE 283


>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
           A system-associated.  Members of this protein family
           occur, one to three members per genome, in the same
           species of Euryarchaeota as contain the predicted
           protein-sorting enzyme archaeosortase (TIGR04125) and
           its cognate protein-sorting signal PGF-CTERM
           (TIGR04126).
          Length = 815

 Score = 25.0 bits (55), Expect = 7.7
 Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)

Query: 45  VTKDGAYALPTEEENCQLVTVSEDDV 70
           V   G Y + T     + V V+E+ V
Sbjct: 788 VKATGPYRI-TSGGVSKEVQVTEEAV 812


>gnl|CDD|217419 pfam03198, Glyco_hydro_72, Glucanosyltransferase.  This is a family
           of glycosylphosphatidylinositol-anchored
           beta(1-3)glucanosyltransferases. The active site
           residues in the Aspergillus fumigatus example are the
           two glutamate residues at 160 and 261.
          Length = 313

 Score = 25.0 bits (55), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 56  EEENCQLVTVSEDDVRNVIKNFPKL 80
           E  N  LV++  DDV + +++F  L
Sbjct: 281 EANNYGLVSIDGDDVVSTLQDFNNL 305


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,844,335
Number of extensions: 382800
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 12
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)