RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9108
         (98 letters)



>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 193

 Score = 24.2 bits (51), Expect = 2.9
 Identities = 12/80 (15%), Positives = 26/80 (32%)

Query: 1   MKWDSKPIRLRKFYVTTQPANENRGKFLVRIVAIKAGVHKEHSWVTKDGAYALPTEEENC 60
                +    +K Y           K    +         E   +T+    A    +  C
Sbjct: 100 DYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYC 159

Query: 61  QLVTVSEDDVRNVIKNFPKL 80
           +L ++S D+   V++ +P +
Sbjct: 160 RLYSLSVDNFNEVLEEYPMM 179


>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 243

 Score = 23.5 bits (50), Expect = 5.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 41  EHSWVTKDGAYALPTEEENCQLVTVSEDD 69
           E    TKD  + L  E    +LV ++E D
Sbjct: 215 EVGVATKDKFFTLSAENIEERLVAIAEQD 243


>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
           [TaxId: 381]}
          Length = 133

 Score = 23.2 bits (49), Expect = 6.2
 Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 58  ENCQLVTVSEDDVRNVIKNFPKLDTLILIKTMLK 91
               L+++   D + +  + P++   I  KT L+
Sbjct: 98  TTVSLLSLHSADFQMLCSSSPEI-AEIFRKTALE 130


>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
           6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 137

 Score = 23.0 bits (48), Expect = 7.2
 Identities = 3/23 (13%), Positives = 9/23 (39%)

Query: 58  ENCQLVTVSEDDVRNVIKNFPKL 80
              +   +  D+++ V   F + 
Sbjct: 110 TEVEAFALIADELKFVASQFRRS 132


>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
           and 3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 155

 Score = 22.9 bits (48), Expect = 8.7
 Identities = 3/23 (13%), Positives = 14/23 (60%)

Query: 58  ENCQLVTVSEDDVRNVIKNFPKL 80
           E+ +L+ + ++D + + + + + 
Sbjct: 119 ESSELLRIEQEDFKALWEKYRQY 141


>d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate
           synthase (KDO8P synthase) {Haemophilus influenzae
           [TaxId: 727]}
          Length = 281

 Score = 23.1 bits (48), Expect = 8.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)

Query: 69  DVRNVIKNFPKLDT 82
            + +++K+FP+LDT
Sbjct: 268 AIDDLVKSFPELDT 281


>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR
           {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 153

 Score = 22.5 bits (48), Expect = 9.5
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 4   DSKPIRLRKFYVTTQPANENRGKFLVRIVAIKAGVHKEHSWVTKDGA--YALP-----TE 56
           D   +RL+   +  +  +   G+F++R+         E +         Y        T 
Sbjct: 63  DDIDVRLKWLGLFHRRKHHY-GRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTT 121

Query: 57  EENCQLVTVSEDDVRNVIK 75
            +N Q+  V   DV  +IK
Sbjct: 122 RQNWQIRGVVLPDVPEIIK 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 357,165
Number of extensions: 14070
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 8
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)