BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9113
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 62/67 (92%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHTTGGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA G
Sbjct: 265 SGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 324
Query: 196 ATSVIVS 202
AT+++
Sbjct: 325 ATTLMFE 331
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 130/275 (47%), Gaps = 51/275 (18%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D ++Y++L +VC+ AN L G++KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIVVSKCSGDDMSTVPANSERE------------RKLKLRKVVTGSTGKPK--GVLH-- 147
HS++ S + ++ +S R + L+K V + P V H
Sbjct: 159 HSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218
Query: 148 -----------TTGGYLLYAATTHKYVFDYKPGD--------IYWCTADVGWITGHTYVV 188
G L + K +++P I + + G G +
Sbjct: 219 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 189 YGPLANGATS---VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIV-------- 237
G L AT+ V PG+IYWCTADVGW+TGH+Y++YGPLA GAT+++
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 238 -SETLKMLNTNFFCILYT----ISSLMWAGSLDIR 267
+ ++++ + ILYT I +LM G I
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 62/67 (92%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHTTGGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA G
Sbjct: 265 SGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 324
Query: 196 ATSVIVS 202
AT+++
Sbjct: 325 ATTLMFE 331
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 132/275 (48%), Gaps = 51/275 (18%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D ++Y++L +VC+ AN L G++KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIVVSKCSGDDMSTVPANSERE------------RKLKLRKVVTGSTGKPKG------- 144
HS++ S + ++ +S R + L+K V + P
Sbjct: 159 HSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218
Query: 145 VLHTTGGYLLY--------------AATTHK--YVFDYKPGDIYWCTADVGWITGHTYVV 188
VL TG + + A+ H+ + P I + + G G +
Sbjct: 219 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 189 YGPLANGATS---VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIV-------- 237
G L AT+ V PG+IYWCTADVGW+TGH+Y++YGPLA GAT+++
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 238 -SETLKMLNTNFFCILYT----ISSLMWAGSLDIR 267
+ ++++ + ILYT I +LM G I
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 62/67 (92%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHTTGGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA G
Sbjct: 265 SGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 324
Query: 196 ATSVIVS 202
AT+++
Sbjct: 325 ATTLMFE 331
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 132/275 (48%), Gaps = 51/275 (18%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D ++Y++L +VC+ AN L G++KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIVVSKCSGDDMSTVPANSERE------------RKLKLRKVVTGSTGKPKG------- 144
HS++ S + ++ +S R + L+K V + P
Sbjct: 159 HSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218
Query: 145 VLHTTGGYLLY--------------AATTHK--YVFDYKPGDIYWCTADVGWITGHTYVV 188
VL TG + + A+ H+ + P I + + G G +
Sbjct: 219 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 189 YGPLANGATS---VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIV-------- 237
G L AT+ V PG+IYWCTADVGW+TGH+Y++YGPLA GAT+++
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 238 -SETLKMLNTNFFCILYT----ISSLMWAGSLDIR 267
+ ++++ + ILYT I +LM G I
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 62/67 (92%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHTTGGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA G
Sbjct: 265 SGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 324
Query: 196 ATSVIVS 202
AT+++
Sbjct: 325 ATTLMFE 331
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 130/275 (47%), Gaps = 51/275 (18%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D ++Y++L +VC+ AN L G++KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIVVSKCSGDDMSTVPANSERE------------RKLKLRKVVTGSTGKPK--GVLH-- 147
HS++ S + ++ +S R + L+K V + P V H
Sbjct: 159 HSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218
Query: 148 -----------TTGGYLLYAATTHKYVFDYKPGD--------IYWCTADVGWITGHTYVV 188
G L + K +++P I + + G G +
Sbjct: 219 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 189 YGPLANGATS---VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIV-------- 237
G L AT+ V PG+IYWCTADVGW+TGH+Y++YGPLA GAT+++
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 238 -SETLKMLNTNFFCILYT----ISSLMWAGSLDIR 267
+ ++++ + ILYT I +LM G I
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 62/67 (92%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHTTGGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA G
Sbjct: 265 SGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 324
Query: 196 ATSVIVS 202
AT+++
Sbjct: 325 ATTLMFE 331
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 129/275 (46%), Gaps = 51/275 (18%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D ++Y++L +VC+ AN L G++KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIVVSKCSGDDMSTVPANSERE------------RKLKLRKVVTGSTGKPK--GVLH-- 147
HS++ S + ++ +S + L+K V + P V H
Sbjct: 159 HSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVI 218
Query: 148 -----------TTGGYLLYAATTHKYVFDYKPGD--------IYWCTADVGWITGHTYVV 188
G L + K +++P I + + G G +
Sbjct: 219 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 189 YGPLANGATS---VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIV-------- 237
G L AT+ V PG+IYWCTADVGW+TGH+Y++YGPLA GAT+++
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 238 -SETLKMLNTNFFCILYT----ISSLMWAGSLDIR 267
+ ++++ + ILYT I +LM G I
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 62/67 (92%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHTTGGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA G
Sbjct: 265 SGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 324
Query: 196 ATSVIVS 202
AT+++
Sbjct: 325 ATTLMFE 331
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 130/275 (47%), Gaps = 51/275 (18%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D ++Y++L +VC+ AN L G++KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIVVSKCSGDDMSTVPANSERE------------RKLKLRKVVTGSTGKPK--GVLH-- 147
HS++ S + ++ +S R + L+K V + P V H
Sbjct: 159 HSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218
Query: 148 -----------TTGGYLLYAATTHKYVFDYKPGD--------IYWCTADVGWITGHTYVV 188
G L + K +++P I + + G G +
Sbjct: 219 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 189 YGPLANGATS---VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIV-------- 237
G L AT+ V PG+IYWCTADVGW+TGH+Y++YGPLA GAT+++
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 238 -SETLKMLNTNFFCILYT----ISSLMWAGSLDIR 267
+ ++++ + ILYT I +LM G I
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 62/67 (92%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHTTGGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA G
Sbjct: 265 SGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 324
Query: 196 ATSVIVS 202
AT+++
Sbjct: 325 ATTLMFE 331
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 132/275 (48%), Gaps = 51/275 (18%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D ++Y++L +VC+ AN L G++KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIV--------VSKCSGDDMS----TVPANSERERKLKLRKVVTGSTGKPKG------- 144
HS++ V+ C D S T R + L+K V + P
Sbjct: 159 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218
Query: 145 VLHTTGGYLLY--------------AATTHK--YVFDYKPGDIYWCTADVGWITGHTYVV 188
VL TG + + A+ H+ + P I + + G G +
Sbjct: 219 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 189 YGPLANGATS---VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIV-------- 237
G L AT+ V PG+IYWCTADVGW+TGH+Y++YGPLA GAT+++
Sbjct: 279 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT 338
Query: 238 -SETLKMLNTNFFCILYT----ISSLMWAGSLDIR 267
+ ++++ + ILYT I +LM G I
Sbjct: 339 PARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 119/239 (49%), Gaps = 46/239 (19%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLK-SKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
G++P +TYK+LLEEVC+ A VL S GV+KGD VA+Y+PMV E ++T+LA +RIGA
Sbjct: 105 GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 164
Query: 103 VHSIVVSKCSGD---------DMSTVPANSERERKLKL---RKVVTGSTGKPKGVLHTTG 150
+HS+V + S + D V E R K+ +++V + + GV H
Sbjct: 165 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV-- 222
Query: 151 GYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHT----------YVVYGPLANGATS-V 199
L+Y T + V + P D+ W T + T + +++Y + GA V
Sbjct: 223 --LVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGV 280
Query: 200 IVSLPG------------------EIYWCTADVGWITGHTYVVYGPLANGATSVIVSET 240
S G ++++ D+GWITGHTYVVYGPL G +++ T
Sbjct: 281 QHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGT 339
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLP-GCTPMKPGAA 43
W+WY IG + IVDT+WQTE+G H++TPL G TPMKPG+A
Sbjct: 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSA 444
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105
+P R+TY ++ +CA+VL + G+ KGDRVA+ +P +E A++GAV
Sbjct: 23 EPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV 82
Query: 106 IVVSKCSGDDMSTVPANS 123
+ ++ + ++S + ++S
Sbjct: 83 PINTRLAAPEVSFILSDS 100
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105
+P R+TY ++ +CA+VL + G+ KGDRVA+ +P +E A++GAV
Sbjct: 37 EPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAV 96
Query: 106 IVVSKCSGDDMSTVPANS 123
+ ++ + ++S + ++S
Sbjct: 97 PINTRLAAPEVSFILSDS 114
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
+++Y +L+ + ANVL ++G+Q GDRVA +E +V LA R G V+
Sbjct: 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
++Y +L+ + ANVL ++G+Q GDRVA +E +V LA R G V+
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
++Y +L+ + ANVL ++G+Q GDRVA +E +V LA R G V+
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
++Y +L+ + ANVL ++G+Q GDRVA +E +V LA R G V+
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
L+Y++L EE + A L+ G KG VA+Y LE+V+ +L + GA + V K
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 113 GDDMSTVPANS 123
D +S + A+S
Sbjct: 550 EDRISYMLADS 560
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 54 TYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV--------- 103
+++L E + ANVL G+Q+GDRVA+ LP V E + +L C R G +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 104 -----HSIVVSKC----SGDD-MSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTGGYL 153
+ + +SK +GD+ + V + L+++ +V+ + G L+ L
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--DGWLNFK-KLL 191
Query: 154 LYAATTHKYVF--DYKPGDIYWCTADVGW--ITGHTYVVYGPLANGATSVIVSLPGEIYW 209
A+TTH V + IY+ + G + H+Y G A +I W
Sbjct: 192 NEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMW 251
Query: 210 CTADVGWITGHTYVVYGPLANGATSVI 236
+D GWI + P A GA + +
Sbjct: 252 TISDTGWILNILCSLMEPWALGACTFV 278
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 54 TYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV--------- 103
+++L E + ANVL G+Q+GDRVA+ LP V E + +L C R G +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 104 -----HSIVVSKC----SGDD-MSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTGGYL 153
+ + +SK +GD+ + V + L+++ +V+ + G L+ L
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--DGWLNFK-KLL 191
Query: 154 LYAATTHKYVF--DYKPGDIYWCTADVGW--ITGHTYVVYGPLANGATSVIVSLPGEIYW 209
A+TTH V + IY+ + G + H+Y G A +I W
Sbjct: 192 NEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMW 251
Query: 210 CTADVGWITGHTYVVYGPLANGATSVI 236
+D GWI + P A GA + +
Sbjct: 252 TISDTGWILNILCSLMEPWALGACTFV 278
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G++G PK H+ L A + + DI W +D GWI + P A G
Sbjct: 215 SGTSGLPKMAEHSYSSLGLKAKMDAGWT-GLQASDIMWTISDTGWILNILCSLMEPWALG 273
Query: 196 ATSVIVSLP 204
A + + LP
Sbjct: 274 ACTFVHLLP 282
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV +++ +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 112 SGDDMSTVPANSE 124
+++ + E
Sbjct: 89 KSAELAELIKRGE 101
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV +++ +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 112 SGDDMSTVPANSE 124
+++ + E
Sbjct: 89 KSAELAELIKRGE 101
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV +++ +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 112 SGDDMSTVPANSE 124
+++ + E
Sbjct: 89 KSAELAELIKRGE 101
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV +++ +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 112 SGDDMSTVPANSE 124
+++ + E
Sbjct: 89 KSAELAELIKRGE 101
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV +++ +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 112 SGDDMSTVPANSE 124
+++ + E
Sbjct: 89 KSAELAELIKRGE 101
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV +++ +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 112 SGDDMSTVPANSE 124
+++ + E
Sbjct: 89 KSAELAELIKRGE 101
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVV 108
D RLT++ L + A+ L GV GDRVAI E++ + A A IGA+ V
Sbjct: 28 DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVN 87
Query: 109 SKCSGDDMSTV 119
+ + D+++ V
Sbjct: 88 YRLNADEIAFV 98
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+Y++L + A + G+Q+ DRV + LP + E + A R+GA+
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+Y++L + A + G+Q+ DRV + LP + E + A R+GA+
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKG +HT A K + D+ + A + + G + PL+ G
Sbjct: 192 SGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251
Query: 196 ATSVIVS 202
AT+++++
Sbjct: 252 ATAILMA 258
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
R++Y +L A L ++GV+ GDRVA+ + E +V +LA + GA +
Sbjct: 59 DRISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPGAEAIVAILAILKCGAAY 112
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 69 LKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG--AVHSIVVSKCSG--DDMSTVPANSE 124
+ KG+QK V LP++ +I++ G ++++ V S ++ VP + +
Sbjct: 133 VSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFD 192
Query: 125 RERKLKLRKVVTGSTGKPKGV 145
R++ + L +GSTG PKGV
Sbjct: 193 RDKTIALIMNSSGSTGLPKGV 213
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 71 SKGVQKGDRVAIYLPMVLEIVVTMLACARIG--AVHSIVVSKCSG--DDMSTVPANSERE 126
KG+QK V LP++ +I++ G ++++ V S ++ VP + +R+
Sbjct: 130 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 189
Query: 127 RKLKLRKVVTGSTGKPKGV 145
+ + L +GSTG PKGV
Sbjct: 190 KTIALIMNSSGSTGLPKGV 208
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 69 LKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG--AVHSIVVSKCSG--DDMSTVPANSE 124
+ KG+QK V LP++ +I++ G ++++ V S ++ VP + +
Sbjct: 128 VSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFD 187
Query: 125 RERKLKLRKVVTGSTGKPKGV 145
R++ + L +GSTG PKGV
Sbjct: 188 RDKTIALIMNSSGSTGLPKGV 208
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+L+Y +L A L KG+ KGD + LP V E + A + G V
Sbjct: 55 QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 72 KGVQKGDRVAIYLPMVLEIVVTMLACARIG--AVHSIVVSKCSG--DDMSTVPANSERER 127
KG+QK V LP++ +I++ G ++++ V S ++ VP + +R++
Sbjct: 136 KGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDK 195
Query: 128 KLKLRKVVTGSTGKPKGV 145
+ L +GSTG PKGV
Sbjct: 196 TIALIMNSSGSTGLPKGV 213
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 64 KCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ A+ L G+Q+GD + ++LP E V+ L + GA+
Sbjct: 61 RVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 156 AATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIY---WCTA 212
A + H Y FD++P I W V G L + AT+ I PG+IY W A
Sbjct: 128 ANSYHTYAFDWQPNSIKWY-------------VDGQLKHTATTQIPQTPGKIYMSLWAGA 174
Query: 213 DV 214
V
Sbjct: 175 GV 176
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 61 EVC----KCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
E+C K A+ + KGV+KG+ V + +P ++ V T+ A R+ A
Sbjct: 57 EICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAA 102
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+L Y+ L A L S ++KGDRVA+ E V AC G V
Sbjct: 47 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLV 99
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
TY++L + A L+++G + GDRV + L ++ L C G +
Sbjct: 42 TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 48 DDYSR---LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
DDY T+K L K AN G+ KGD V + L + ML ++GA+
Sbjct: 79 DDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAI 137
>pdb|3QN3|A Chain A, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|B Chain B, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|C Chain C, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|D Chain D, Phosphopyruvate Hydratase From Campylobacter Jejuni
Length = 417
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 22/86 (25%)
Query: 5 YHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRL--------TYK 56
Y +GG SI+ P+P C + GA N+ D+ ++K
Sbjct: 133 YRYLGGANASIL--------------PVPMCNIINGGAHANNNVDFQEFMIMPFGFTSFK 178
Query: 57 KLLEEVCKCANVLKSKGVQKGDRVAI 82
+ L VC+ +LK + G A+
Sbjct: 179 EALRSVCEIYAILKKELANSGHSTAL 204
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG--A 102
N+ + Y+ L+ + C + K GVQK LP++ +IV+ +G +
Sbjct: 144 NERELYNSLSISQPTIVFCSKRALQKILGVQKK------LPIIQKIVILDSREDYMGKQS 197
Query: 103 VHSIVVSKCSG--DDMSTVPANSERERKLKLRKVVTGSTGKPKGV 145
++S + S ++ +P + +RE L +GSTG PKGV
Sbjct: 198 MYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGV 242
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 13/52 (25%)
Query: 156 AATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
A + H Y FD++P I W V G L + AT+ I PG+I
Sbjct: 141 ANSYHTYAFDWQPNSIKW-------------YVDGQLKHTATTQIPQTPGKI 179
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
H Y FD++PG I W V G L + AT+ I S PG+I
Sbjct: 87 HTYAFDWQPGYIKW-------------YVDGVLKHTATANIPSTPGKI 121
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
H Y FD++PG I W V G L + AT+ I S PG+I
Sbjct: 145 HTYAFDWQPGYIKW-------------YVDGVLKHTATANIPSTPGKI 179
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
H Y FD++PG I W V G L + AT+ I S PG+I
Sbjct: 62 HTYAFDWQPGYIKW-------------YVDGVLKHTATANIPSTPGKI 96
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
H Y FD++PG I W V G L + AT+ I S PG+I
Sbjct: 145 HTYAFDWQPGYIKW-------------YVDGVLKHTATANIPSTPGKI 179
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
H Y FD++PG I W V G L + AT+ I S PG+I
Sbjct: 19 HTYAFDWQPGYIKW-------------YVDGVLKHTATANIPSTPGKI 53
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
H Y FD++PG I W V G L + AT+ I S PG+I
Sbjct: 87 HTYAFDWQPGYIKW-------------YVDGVLKHTATANIPSTPGKI 121
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
H Y FD++PG I W V G L + AT+ I S PG+I
Sbjct: 143 HTYAFDWQPGYIKW-------------YVDGVLKHTATANIPSTPGKI 177
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
H Y FD++PG I W V G L + AT+ I S PG+I
Sbjct: 87 HTYAFDWQPGYIKW-------------YVDGVLKHTATANIPSTPGKI 121
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 13/52 (25%)
Query: 156 AATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
A H Y FD++P I W V G L + AT+ I + PG+I
Sbjct: 165 ANAYHTYAFDWQPNSIKW-------------YVDGQLKHTATNQIPTTPGKI 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,380,863
Number of Sequences: 62578
Number of extensions: 400658
Number of successful extensions: 850
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 778
Number of HSP's gapped (non-prelim): 87
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)