Query psy9113
Match_columns 281
No_of_seqs 155 out of 1632
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 19:17:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o83_A Peptide arylation enzym 100.0 1E-36 3.4E-41 282.8 11.4 235 17-266 24-320 (544)
2 3t5a_A Long-chain-fatty-acid-- 100.0 9.6E-37 3.3E-41 278.5 8.9 243 15-265 16-320 (480)
3 3g7s_A Long-chain-fatty-acid-- 100.0 4.9E-36 1.7E-40 278.4 12.0 239 15-266 11-309 (549)
4 3kxw_A Saframycin MX1 syntheta 100.0 3.1E-36 1.1E-40 281.8 10.1 241 18-265 6-298 (590)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4.3E-36 1.5E-40 278.2 10.8 236 17-267 19-312 (539)
6 3ni2_A 4-coumarate:COA ligase; 100.0 1.3E-35 4.5E-40 274.8 13.8 232 22-266 21-310 (536)
7 3r44_A Fatty acyl COA syntheta 100.0 6.8E-36 2.3E-40 275.6 11.7 234 19-266 12-297 (517)
8 3ivr_A Putative long-chain-fat 100.0 8.7E-36 3E-40 274.3 11.1 227 19-266 2-282 (509)
9 1ry2_A Acetyl-coenzyme A synth 100.0 2.7E-35 9.2E-40 278.9 14.7 236 24-266 83-394 (663)
10 1pg4_A Acetyl-COA synthetase; 100.0 2.4E-35 8.3E-40 278.9 14.0 236 24-266 77-388 (652)
11 4dg8_A PA1221; ANL superfamily 100.0 1.6E-35 5.5E-40 278.4 12.6 230 19-266 23-289 (620)
12 3rg2_A Enterobactin synthase c 100.0 6.1E-35 2.1E-39 274.6 15.3 235 17-267 21-316 (617)
13 3fce_A D-alanine--poly(phospho 100.0 1.5E-35 5.2E-40 272.9 10.4 231 23-266 1-274 (512)
14 1t5h_X 4-chlorobenzoyl COA lig 100.0 5.2E-35 1.8E-39 268.9 13.0 232 23-266 2-285 (504)
15 1v25_A Long-chain-fatty-acid-C 100.0 8E-35 2.7E-39 269.8 12.9 238 20-268 15-308 (541)
16 3rix_A Luciferase, luciferin 4 100.0 4.6E-35 1.6E-39 272.0 11.1 239 16-266 13-320 (550)
17 4gr5_A Non-ribosomal peptide s 100.0 6E-35 2.1E-39 272.3 11.1 228 21-266 73-339 (570)
18 3gqw_A Fatty acid AMP ligase; 100.0 1.7E-34 5.9E-39 269.2 11.1 244 15-266 13-309 (576)
19 3ipl_A 2-succinylbenzoate--COA 100.0 1.4E-34 4.7E-39 265.8 10.2 228 23-272 1-293 (501)
20 3e7w_A D-alanine--poly(phospho 100.0 1.9E-34 6.6E-39 265.5 10.8 231 23-266 1-273 (511)
21 1amu_A GRSA, gramicidin synthe 100.0 4.5E-34 1.6E-38 265.9 10.0 230 19-267 35-307 (563)
22 3tsy_A Fusion protein 4-coumar 100.0 2E-33 6.9E-38 276.8 14.8 232 22-266 60-357 (979)
23 3l8c_A D-alanine--poly(phospho 100.0 9.7E-34 3.3E-38 261.3 11.8 234 21-267 2-278 (521)
24 3etc_A AMP-binding protein; ad 100.0 1E-33 3.4E-38 264.4 11.9 230 24-266 56-354 (580)
25 4fuq_A Malonyl COA synthetase; 100.0 1.1E-33 3.9E-38 259.9 11.9 226 26-265 3-280 (503)
26 2v7b_A Benzoate-coenzyme A lig 100.0 5.1E-33 1.7E-37 257.0 13.0 229 24-267 25-314 (529)
27 2d1s_A Luciferase, luciferin 4 100.0 3.7E-33 1.3E-37 259.0 11.1 229 23-266 25-322 (548)
28 3nyq_A Malonyl-COA ligase; A/B 100.0 2.4E-33 8.1E-38 257.9 9.5 231 11-262 10-278 (505)
29 3c5e_A Acyl-coenzyme A synthet 100.0 1.6E-32 5.4E-37 255.9 11.9 234 24-267 39-336 (570)
30 3ite_A SIDN siderophore synthe 100.0 2.1E-32 7E-37 254.7 8.5 236 15-266 12-307 (562)
31 2vsq_A Surfactin synthetase su 100.0 3.8E-32 1.3E-36 274.2 11.0 229 22-267 463-734 (1304)
32 4gs5_A Acyl-COA synthetase (AM 99.8 1.7E-18 5.8E-23 152.2 9.3 126 127-267 36-162 (358)
33 3qov_A Phenylacetate-coenzyme 99.6 1.5E-15 5.1E-20 136.7 5.8 130 128-267 86-220 (436)
34 2y27_A Phenylacetate-coenzyme 99.5 8.2E-15 2.8E-19 131.9 6.7 131 126-267 88-224 (437)
35 3hgu_A EHPF; phenazine, antibi 99.5 3.2E-15 1.1E-19 131.7 3.2 128 126-266 89-244 (369)
36 2y4o_A Phenylacetate-coenzyme 99.5 1.2E-14 4E-19 131.1 6.4 131 126-267 90-226 (443)
37 3qov_A Phenylacetate-coenzyme 64.1 23 0.00077 30.7 7.9 73 38-110 86-165 (436)
38 2y27_A Phenylacetate-coenzyme 63.8 21 0.00072 30.9 7.6 74 36-109 88-168 (437)
39 4b2g_A GH3-1 auxin conjugating 63.1 2.5 8.7E-05 39.0 1.5 27 128-154 99-127 (609)
40 2y4o_A Phenylacetate-coenzyme 61.0 25 0.00086 30.5 7.6 75 36-110 90-171 (443)
41 4epl_A Jasmonic acid-amido syn 54.4 5.5 0.00019 36.6 2.1 26 129-154 99-126 (581)
42 4eql_A 4-substituted benzoates 50.8 6.8 0.00023 36.0 2.1 23 132-154 98-121 (581)
43 4eez_A Alcohol dehydrogenase 1 38.9 90 0.0031 25.9 7.3 59 51-109 135-196 (348)
44 2jtq_A Phage shock protein E; 38.6 73 0.0025 20.1 5.9 46 51-103 22-67 (85)
45 3ijw_A Aminoglycoside N3-acety 36.1 29 0.00098 28.4 3.5 24 63-86 18-41 (268)
46 2nyg_A YOKD protein; PFAM02522 33.7 33 0.0011 28.1 3.5 21 65-85 18-38 (273)
47 3sma_A FRBF; N-acetyl transfer 33.6 33 0.0011 28.3 3.5 54 47-107 16-79 (286)
48 1ofu_X SULA, hypothetical prot 33.0 1.1E+02 0.0038 21.3 5.8 43 66-108 47-89 (119)
49 4gs5_A Acyl-COA synthetase (AM 32.7 1.9E+02 0.0064 24.1 8.3 72 37-111 36-113 (358)
50 1ry2_A Acetyl-coenzyme A synth 30.4 70 0.0024 29.6 5.6 91 128-228 97-191 (663)
51 3rix_A Luciferase, luciferin 4 30.1 1.1E+02 0.0038 27.2 6.8 89 128-228 35-127 (550)
52 3hgu_A EHPF; phenazine, antibi 28.1 65 0.0022 27.0 4.6 72 36-107 89-167 (369)
53 3g7s_A Long-chain-fatty-acid-- 27.8 1.1E+02 0.0037 27.3 6.2 76 145-228 51-129 (549)
54 3jx9_A Putative phosphoheptose 27.4 1.8E+02 0.0062 21.7 6.5 37 73-109 74-112 (170)
55 2wlr_A Putative thiosulfate su 27.4 1.1E+02 0.0037 26.5 6.0 58 51-108 170-235 (423)
56 3o83_A Peptide arylation enzym 26.9 2.1E+02 0.0073 25.3 8.1 71 36-109 189-267 (544)
57 2fsx_A RV0390, COG0607: rhodan 26.6 66 0.0023 23.0 3.9 49 64-112 67-116 (148)
58 1mdb_A 2,3-dihydroxybenzoate-A 26.3 3.1E+02 0.011 24.2 9.1 71 36-109 180-258 (539)
59 1e0c_A Rhodanese, sulfurtransf 26.0 1.1E+02 0.0037 24.4 5.4 53 51-103 191-249 (271)
60 1pg4_A Acetyl-COA synthetase; 25.1 78 0.0027 29.1 4.9 91 128-228 91-184 (652)
61 3kxw_A Saframycin MX1 syntheta 24.8 1.9E+02 0.0066 25.7 7.4 72 35-109 164-242 (590)
62 1urh_A 3-mercaptopyruvate sulf 23.8 1.2E+02 0.0041 24.3 5.3 47 63-109 72-120 (280)
63 1e0c_A Rhodanese, sulfurtransf 23.8 1.2E+02 0.0042 24.0 5.4 47 63-109 67-115 (271)
64 1uar_A Rhodanese; sulfurtransf 23.7 98 0.0034 24.9 4.8 41 63-103 219-260 (285)
65 3r44_A Fatty acyl COA syntheta 23.7 1.5E+02 0.0053 26.1 6.5 76 145-228 42-120 (517)
66 1v25_A Long-chain-fatty-acid-C 23.6 1.5E+02 0.0051 26.3 6.4 77 144-228 45-124 (541)
67 2l66_A SSO7C4, transcriptional 22.6 1.1E+02 0.0039 17.6 3.6 19 69-87 21-39 (53)
68 1wek_A Hypothetical protein TT 22.3 2.8E+02 0.0095 21.6 7.9 54 57-115 53-106 (217)
69 3ivr_A Putative long-chain-fat 22.1 94 0.0032 27.3 4.7 76 145-228 30-108 (509)
70 4fuq_A Malonyl COA synthetase; 22.1 1E+02 0.0034 27.2 4.8 76 146-229 28-106 (503)
71 1t5h_X 4-chlorobenzoyl COA lig 22.0 99 0.0034 27.2 4.8 76 145-228 28-106 (504)
72 3utn_X Thiosulfate sulfurtrans 22.0 1.2E+02 0.004 25.4 4.9 47 61-107 97-144 (327)
73 1h2b_A Alcohol dehydrogenase; 22.0 2E+02 0.0068 24.0 6.5 41 68-108 176-218 (359)
74 3ipl_A 2-succinylbenzoate--COA 22.0 88 0.003 27.4 4.4 75 146-228 26-100 (501)
75 3ohp_A Hypoxanthine phosphorib 21.8 2.4E+02 0.0083 20.9 6.3 22 51-72 7-28 (177)
76 3olh_A MST, 3-mercaptopyruvate 21.8 1.1E+02 0.0037 25.1 4.6 41 63-103 240-280 (302)
77 3c5e_A Acyl-coenzyme A synthet 21.8 1E+02 0.0034 27.8 4.8 77 144-228 71-151 (570)
78 1oft_A SULA, hypothetical prot 21.7 1.5E+02 0.0052 22.0 4.9 42 66-107 89-130 (161)
79 3utn_X Thiosulfate sulfurtrans 21.7 2.3E+02 0.008 23.6 6.7 38 72-109 270-307 (327)
80 3d1p_A Putative thiosulfate su 21.4 1.4E+02 0.0049 20.8 4.8 39 65-103 79-117 (139)
81 2ayi_A Aminopeptidase T; metal 21.4 3E+02 0.01 23.8 7.5 50 59-108 5-58 (408)
82 3rg2_A Enterobactin synthase c 21.3 3.3E+02 0.011 24.5 8.3 71 36-109 182-260 (617)
83 1urh_A 3-mercaptopyruvate sulf 21.2 1.8E+02 0.0062 23.2 5.9 61 51-111 199-265 (280)
84 3ni2_A 4-coumarate:COA ligase; 21.2 1.6E+02 0.0055 26.1 6.0 76 145-228 48-126 (536)
85 2v7b_A Benzoate-coenzyme A lig 21.1 1.3E+02 0.0044 26.6 5.4 75 146-228 48-125 (529)
86 2k0z_A Uncharacterized protein 20.6 1.3E+02 0.0044 20.1 4.2 54 51-111 37-90 (110)
87 1uuf_A YAHK, zinc-type alcohol 20.5 2E+02 0.0068 24.1 6.3 41 67-108 185-225 (369)
88 3hzu_A Thiosulfate sulfurtrans 20.5 1.9E+02 0.0064 23.8 5.9 46 63-108 97-144 (318)
89 3two_A Mannitol dehydrogenase; 20.2 1.9E+02 0.0065 23.9 6.0 40 68-108 168-207 (348)
No 1
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1e-36 Score=282.79 Aligned_cols=235 Identities=17% Similarity=0.120 Sum_probs=195.8
Q ss_pred eccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 17 DTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 17 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
.++|.++|+.++|++.++++||++|+++ .++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus 24 ~~~~~~~tl~~~l~~~a~~~p~~~Al~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 24 KGYWIDQPLTRILTVGVQSHPHSLAIIC----GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp TTSCCCCCTTHHHHHHHHHCTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhCCCceEEEc----CCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 4689999999999999999999999995 578999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC---------------c-------------------------CC---------------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST---------------V-------------------------PA--------------- 121 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~---------------~-------------------------~~--------------- 121 (281)
|+++|++++|+++.++.+++.+ . ..
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPA 179 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCC
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccc
Confidence 9999999999999998776655 0 00
Q ss_pred -----Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhH-HHHhhhcc
Q psy9113 122 -----NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY-VVYGPLAN 194 (281)
Q Consensus 122 -----~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~-~~~~~l~~ 194 (281)
......++++ ++|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+++.. .++.++..
T Consensus 180 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 258 (544)
T 3o83_A 180 ETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDY-SVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHA 258 (544)
T ss_dssp SSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred ccccccccCCccceEEEEECCCcccCCceEEechHHHHH-HHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHc
Confidence 0112236778 99999999999999999999998 7777778889999999999999999998764 58899999
Q ss_pred CceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 195 GATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 195 G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
|+++++. + .+++..+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+.-.
T Consensus 259 G~~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~i~~gG~~l~ 320 (544)
T 3o83_A 259 GGCVVMA--P----NPEPLNCFSIIQRHQVNMAS---LVPSAVIMWLEKAAQYKD-QIQSLKLLQVGGASFP 320 (544)
T ss_dssp TCEEEEC--S----SCCHHHHHHHHHHHTCCEEE---ECHHHHHHHHHHHTTTHH-HHTTCCEEEEESSCCC
T ss_pred CCEEEEC--C----CCCHHHHHHHHHHHCCCEEE---echHHHHHHHhchhhccc-cCCcceEEEEcCCCCC
Confidence 9999999 5 57899999999999999977 566666777776654321 2334555555565544
No 2
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=9.6e-37 Score=278.46 Aligned_cols=243 Identities=17% Similarity=0.084 Sum_probs=178.4
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCC---CCC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGND---PDD--YSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLE 89 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~---~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~ 89 (281)
..-..++.+|+.++|++.++++||++|+++.+ ..+ .+++||+||.++++++|+.|+++|+ +||+|+++++|+++
T Consensus 16 ~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e 94 (480)
T 3t5a_A 16 PRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE 94 (480)
T ss_dssp --------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH
T ss_pred cccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH
Confidence 34456778899999999999999999998643 112 2899999999999999999999996 99999999999999
Q ss_pred HHHHHHHHHHhcCeEEEeec---CCCCCCcCC-----------------------c---C--------------------
Q psy9113 90 IVVTMLACARIGAVHSIVVS---KCSGDDMST-----------------------V---P-------------------- 120 (281)
Q Consensus 90 ~~~~~lA~~~~G~~~v~l~~---~~~~~~~~~-----------------------~---~-------------------- 120 (281)
++++++||+++|++++|+++ .++.+++.+ . +
T Consensus 95 ~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (480)
T 3t5a_A 95 YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNG 174 (480)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSCTTCC--
T ss_pred HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccccccccC
Confidence 99999999999999999999 666666655 0 0
Q ss_pred -CCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCC------CCEEEEeCchhhhhhHhHHHHhhh
Q psy9113 121 -ANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKP------GDIYWCTADVGWITGHTYVVYGPL 192 (281)
Q Consensus 121 -~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~------~~~~l~~~pl~h~~gl~~~~~~~l 192 (281)
.......++++ |+|||||||.||||+++|+++.. ........++... ++++++.+|++|.+|+...++.+|
T Consensus 175 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l 253 (480)
T 3t5a_A 175 YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRV-NFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPI 253 (480)
T ss_dssp -CCCCSSCCSEEEEECC------CCCEEEEHHHHHH-HHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHH
T ss_pred CCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHH-HHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHH
Confidence 00011235778 99999999999999999999988 6666666667666 899999999999999878899999
Q ss_pred ccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 193 ANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 193 ~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
..|+++++. +......+++.+++.++++++|. . ..|.++..++............++++++.+...|
T Consensus 254 ~~G~~~v~~--~~~~~~~~~~~~~~~i~~~~~t~-~---~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG 320 (480)
T 3t5a_A 254 LGGYPAVLT--SPVSFLQRPARWMHLMASDFHAF-S---AAPNFAFELAARRTTDDDMAGRDLGNILTILSGS 320 (480)
T ss_dssp HHTCCEEEC--CHHHHHHCTHHHHHHTTSSSEEE-E---EECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECC
T ss_pred HcCCceEEE--CHHHHHHCHHHHHHHHHhhceeE-e---eChHHHHHHHHhhcCcccccccchhhhheeeecC
Confidence 999999998 42111248999999999999994 4 3334445555543222212345566665544444
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.9e-36 Score=278.40 Aligned_cols=239 Identities=15% Similarity=0.095 Sum_probs=197.1
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCCC----CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDP----DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEI 90 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~----~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~ 90 (281)
.++..+...|+.++|.+.++++||++|+++.+. +..+++||+||.++++++|+.|+++|+++||+|+++++|++++
T Consensus 11 ~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~ 90 (549)
T 3g7s_A 11 FPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY 90 (549)
T ss_dssp CCCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 455677888999999999999999999987531 2338999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEeecCCCCCCcCC--------------------------cCC-----------------------
Q psy9113 91 VVTMLACARIGAVHSIVVSKCSGDDMST--------------------------VPA----------------------- 121 (281)
Q Consensus 91 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~--------------------------~~~----------------------- 121 (281)
+++++||+++|++++|+++.++.+++.+ .+.
T Consensus 91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (549)
T 3g7s_A 91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSED 170 (549)
T ss_dssp HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHHHSCSC
T ss_pred HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHhcCccc
Confidence 9999999999999999999999887766 000
Q ss_pred --Cchh-hhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 122 --NSER-ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 122 --~~~~-~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
.... ..++++ |+|||||||.||||+++|+++.. ........+++.++|+++..+|++|.+|+.. ++.++..|++
T Consensus 171 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~ 248 (549)
T 3g7s_A 171 FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAA-NALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNE 248 (549)
T ss_dssp CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHH-HHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCE
T ss_pred cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHH-HHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCce
Confidence 0001 126778 99999999999999999999999 7777777889999999999999999999864 8899999999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhh---hhccCCCc
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSL---MWAGSLDI 266 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl---~~~g~~g~ 266 (281)
+++. + .++++.+++.++++++|+++ .+|.++..+++...... ...+++++ ..+|++..
T Consensus 249 ~~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~--~~~~~~~lr~~~~gg~~l~ 309 (549)
T 3g7s_A 249 YVVM--G----MFNQEMLAENIEKYKGTFSW---AVPPALNVLVNTLESSN--KTYDWSYLKVFATGAWPVA 309 (549)
T ss_dssp EEEE--S----SCCHHHHHHHHHHTTCCEEE---ECHHHHHHHHHHHHHSC--CCCCCTTCCEEEEESSCCC
T ss_pred EEEc--C----CCCHHHHHHHHHHhCCeEEE---eCCHHHHHHHhhhhhhc--ccCCccceeEEEeCCccCC
Confidence 9999 5 68999999999999999977 66666777777665432 22344444 44555433
No 4
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.1e-36 Score=281.85 Aligned_cols=241 Identities=15% Similarity=0.111 Sum_probs=194.8
Q ss_pred ccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHH
Q psy9113 18 TFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97 (281)
Q Consensus 18 ~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~ 97 (281)
...+.+|+.++|++.++++||++|+++.+.+.++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||
T Consensus 6 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~ 85 (590)
T 3kxw_A 6 EYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGC 85 (590)
T ss_dssp HHHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred hhcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 45677899999999999999999998754445689999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeecCCCC---CCcCC----------------------c--C------------------------CCchhh
Q psy9113 98 ARIGAVHSIVVSKCSG---DDMST----------------------V--P------------------------ANSERE 126 (281)
Q Consensus 98 ~~~G~~~v~l~~~~~~---~~~~~----------------------~--~------------------------~~~~~~ 126 (281)
+++|++++|+++..+. +++.+ . . ......
T Consensus 86 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (590)
T 3kxw_A 86 LYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIK 165 (590)
T ss_dssp HHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGGGGGGCCCCCCC
T ss_pred HHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhccccccccCCCCCCC
Confidence 9999999999997642 22222 0 0 001112
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
.++++ |+|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+|+...++.+++.|+++++. +.
T Consensus 166 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~--~~ 242 (590)
T 3kxw_A 166 SNDIAFLQYTSGSTMHPKGVMVSHHNLLD-NLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM--SP 242 (590)
T ss_dssp TTSEEEEEECSSCSSSCCEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC--CH
T ss_pred CCCeEEEEeCcCCCCCceEEEeeHHHHHH-HHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe--CH
Confidence 36778 99999999999999999999999 7777777889999999999999999999876689999999999998 42
Q ss_pred ccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 206 EIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
.....++..+++.++++++|.+. .+|.++..+++.+..... ...++++++.+...|
T Consensus 243 ~~~~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~~~~~~-~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 243 FSFLQNPLSWLKHITKYKATISG---SPNFAYDYCVKRIREEKK-EGLDLSSWVTAFNGA 298 (590)
T ss_dssp HHHHHCTHHHHHHHHHHTCSEEE---ECTHHHHHHHHHCCGGGG-TTCCCTTCCEEEECS
T ss_pred HHHHHCHHHHHHHHHHhCCeeec---CChhHHHHHHHHhhhhhc-cCCCchhhHHHhhCC
Confidence 11112899999999999999976 677777777776544332 344566665443333
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4.3e-36 Score=278.22 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=194.9
Q ss_pred eccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 17 DTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 17 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
.+.|.+.|+.++|.+.++++||++|+++ .++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus 19 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 19 NGCWAGETFGDLLRDRAAKYGDRIAITC----GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp TTSSCSCCHHHHHHHHHHHHTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cCcccCCCHHHHHHHHHHHCCCCEEEEe----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 3467888999999999999999999995 468999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC-----------c--------------------C-------------CC----------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST-----------V--------------------P-------------AN---------- 122 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~-----------~--------------------~-------------~~---------- 122 (281)
|+++|++++|+++.++.+++.+ . + +.
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPV 174 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCCCC
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcccccc
Confidence 9999999999999887765543 0 0 00
Q ss_pred --chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhH-HHHhhhccCceE
Q psy9113 123 --SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY-VVYGPLANGATS 198 (281)
Q Consensus 123 --~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~-~~~~~l~~G~~~ 198 (281)
.....++++ ++|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+|+.. .++.+|..|+++
T Consensus 175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~ 253 (539)
T 1mdb_A 175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIY-SLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRV 253 (539)
T ss_dssp CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHH-HHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEE
T ss_pred ccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHH-HHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEE
Confidence 011235778 99999999999999999999998 6666677788999999999999999999865 689999999999
Q ss_pred EEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 199 VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 199 v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
++. + .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+....
T Consensus 254 v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~~~~gG~~l~~ 312 (539)
T 1mdb_A 254 VLS--P----SPSPDDAFPLIEREKVTITA---LVPPLAMVWMDAASSRRD-DLSSLQVLQVGGAKFSA 312 (539)
T ss_dssp EEC--S----SSSHHHHHHHHHHHTCSEEE---ECHHHHHHHHHHHHHCCC-CCTTCCEEEEESSCCCH
T ss_pred EEC--C----CCCHHHHHHHHHHcCCeEEE---ccHHHHHHHHhCccccCC-CccceeEEEEcCCCCCH
Confidence 998 5 57899999999999999977 566667777766543221 22345555556665443
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.3e-35 Score=274.78 Aligned_cols=232 Identities=17% Similarity=0.175 Sum_probs=189.3
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
+.|+.++|.+.++++||++|+++. .+++.+||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~G 98 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLING--ANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRG 98 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEET--TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHhhcCCCceEEEEC--CCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 479999999999999999999864 345899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC---------------------------------cCC--------------------Cchhhhc
Q psy9113 102 AVHSIVVSKCSGDDMST---------------------------------VPA--------------------NSERERK 128 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~---------------------------------~~~--------------------~~~~~~~ 128 (281)
++++|+++.++.+++.+ ... ......+
T Consensus 99 av~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (536)
T 3ni2_A 99 AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPD 178 (536)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHTSCGGGCCCCCCCTT
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhhccccccccCCCCcc
Confidence 99999999999888776 000 0011236
Q ss_pred ccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh----hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 129 LKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY----VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 129 ~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
+++ ++|||||||.||||+++|+++.. ....... .+++.++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 179 d~a~i~~TSGTTG~PKgv~~th~~l~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~-- 255 (536)
T 3ni2_A 179 DVVALPYSSGTTGLPKGVMLTHKGLIT-SVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM-- 255 (536)
T ss_dssp SEEECCEECTTSSSCEEEEEEHHHHHH-HHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEEC--
T ss_pred CEEEEEcCCCccccchHHHhhHHHHHH-HHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEc--
Confidence 778 99999999999999999999988 4433222 356788999999999999999877889999999999999
Q ss_pred CCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+ .+++..+++.++++++|++. .+|.++..+++....... ...+|+.+..+|++-.
T Consensus 256 ~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~i~~gGe~l~ 310 (536)
T 3ni2_A 256 P----KFEIGSLLGLIEKYKVSIAP---VVPPVMMSIAKSPDLDKH-DLSSLRMIKSGGAPLG 310 (536)
T ss_dssp S----SCCHHHHHHHHHHHTCCEEE---ECHHHHHHHHTCSCGGGS-CCTTCCEEEEESSCCC
T ss_pred C----CCCHHHHHHHHHHhCCeEEE---ccHHHHHHHHhCcccccC-CCccceEEEECCCCCC
Confidence 5 67899999999999999977 556666666665443221 2233444455555543
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=6.8e-36 Score=275.56 Aligned_cols=234 Identities=21% Similarity=0.239 Sum_probs=188.1
Q ss_pred cccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 19 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
.-..+|+.++|.+.++++||++|+++. +.++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP--STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG--GGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC--CcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 445669999999999999999999964 344699999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC--------------------------cCC-------------------------Cchhhh
Q psy9113 99 RIGAVHSIVVSKCSGDDMST--------------------------VPA-------------------------NSERER 127 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~--------------------------~~~-------------------------~~~~~~ 127 (281)
++|++++|+++.++.+++.+ .+. ......
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGG 169 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCCCCCCCCCCT
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCcCCCCCCCCC
Confidence 99999999999998887766 000 001123
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCc
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGE 206 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~ 206 (281)
++++ ++|||||||.||||+++|+++.. ........+++.++|+++..+|++|.+|+...++..+ .|+++++. +
T Consensus 170 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~--~-- 243 (517)
T 3r44_A 170 DDNLFIMYTSGTTGHPKGVVHTHESVHS-AASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM--P-- 243 (517)
T ss_dssp TSEEEEEEECC---CCEEEEEEHHHHHH-HHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC--S--
T ss_pred CCeEEEEECCcccccCceeeeeHHHHHH-HHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe--C--
Confidence 6778 99999999999999999999998 7777777889999999999999999999865445444 99999998 5
Q ss_pred cccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 207 IYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 207 ~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.+++..+++.++++++|++. .+|.++..+++....... ...+|+.+..+|++-.
T Consensus 244 --~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~i~~gGe~l~ 297 (517)
T 3r44_A 244 --QFDATKVWSLIVEERVCIGG---AVPAILNFMRQVPEFAEL-DAPDFRYFITGGAPMP 297 (517)
T ss_dssp --SCCHHHHHHHHHHTTCCEEE---ECHHHHHHHHHSHHHHHC-CCTTCCEEEECSSCCC
T ss_pred --CCCHHHHHHHHHHhCCeEEE---eHHHHHHHHHhCcccccC-CCCcccEEEECCCCCC
Confidence 68999999999999999977 556666666655443221 2234455555555543
No 8
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=8.7e-36 Score=274.30 Aligned_cols=227 Identities=21% Similarity=0.174 Sum_probs=183.8
Q ss_pred cccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 19 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
.|.++|+.++|++.++++||++|+++ .++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 77 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMV----DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVA 77 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEE----CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 46788999999999999999999995 57899999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC------------------c----------------------CCC-------------chh
Q psy9113 99 RIGAVHSIVVSKCSGDDMST------------------V----------------------PAN-------------SER 125 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~------------------~----------------------~~~-------------~~~ 125 (281)
++|++++|+++.++.+++.+ . ++. ...
T Consensus 78 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (509)
T 3ivr_A 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEF 157 (509)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCCCSCCCCCCC
T ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccCCCCCCcCCC
Confidence 99999999999998887766 0 000 011
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCC
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~ 204 (281)
..++++ ++|||||||.||||+++|+++.. ........+++.++|+++..+|++|.+|+... +.++..|+..++. .
T Consensus 158 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~-~~~~~~~g~~~~~--~ 233 (509)
T 3ivr_A 158 GAADGFVIIHTAAVGGRPRGALISQGNLLI-AQSSLVDAWRLTEADVNLGMLPLFHVTGLGLM-LTLQQAGGASVIA--A 233 (509)
T ss_dssp CTTSEEEEEEEEC--CCEEEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCTTSHHHHHHH-HHHHHHTCEEEEC--S
T ss_pred CccccEEEEeCCCCCCCCcEEEEehHHHHH-HHHHHHHhhCCCCCcEEEEeCCCcchhHHHHH-HHHHHhCCcEEEe--c
Confidence 235778 99999999999999999999998 77777778899999999999999999998644 4444445555555 2
Q ss_pred CccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 205 GEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 205 ~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.++++.+++.++++++|+++ .+|.++..+++.... .++++++.+...|.
T Consensus 234 ----~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~~~------~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 234 ----KFDPAQAARDIEAHKVTVMA---EFAPMLGNILDQAAP------AQLASLRAVTGLDT 282 (509)
T ss_dssp ----SCCHHHHHHHHHHHTCCEEE---EETTHHHHHHHHCCG------GGGTTCCEEEEECC
T ss_pred ----ccCHHHHHHHHHHHCCcEEE---ecHHHHHHHHhcccc------cchhhhheecccCC
Confidence 68999999999999999976 555566677665522 34445554444443
No 9
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.7e-35 Score=278.90 Aligned_cols=236 Identities=36% Similarity=0.553 Sum_probs=190.1
Q ss_pred chhhhhccCCCCCCCCCccccCC--CCCCeeeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGND--PDDYSRLTYKKLLEEVCKCANVLK-SKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~--~~~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
++.++|+++++++||++|+++.+ .+..+++||+||.++++++|+.|+ ++|+++||+|+++++|+++++++++||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 78889999999999999998742 235689999999999999999999 999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC---------------c--------------------CC-------------C----------
Q psy9113 101 GAVHSIVVSKCSGDDMST---------------V--------------------PA-------------N---------- 122 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~---------------~--------------------~~-------------~---------- 122 (281)
|++++|+++.++.+++.+ . +. .
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 242 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLD 242 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEE
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCcccc
Confidence 999999999887665544 0 00 0
Q ss_pred --------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHH
Q psy9113 123 --------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187 (281)
Q Consensus 123 --------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~ 187 (281)
...+.++++ |+|||||||+||||+++|+++...........+++.++|++++..|++|++|+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~ 322 (663)
T 1ry2_A 243 WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYV 322 (663)
T ss_dssp HHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHT
T ss_pred HHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHH
Confidence 001235778 99999999999999999999877344455566889999999999999999998778
Q ss_pred HHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 188 VYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 188 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++.+|..|+++++. ++.+...++..+++.|+++++|+++ .+|.++..+++.... . ....++++++.++..|.
T Consensus 323 ~~~~L~~G~t~v~~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~Ps~~~~l~~~~~~-~-~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 323 VYGPLLYGCATLVF--EGTPAYPNYSRYWDIIDEHKVTQFY---VAPTALRLLKRAGDS-Y-IENHSLKSLRCLGSVGE 394 (663)
T ss_dssp THHHHHHTSEEEEE--CSCTTSSCTTHHHHHHHHTTCSEEE---ECHHHHHHHTTSCTT-S-SSSCCCTTCCEEEECSS
T ss_pred HHHHHHhCCEEEEE--CCCCCCCCHHHHHHHHHHcCCCEEE---ecHHHHHHHHhcCcc-c-cccCCcCceEEEEEEcC
Confidence 89999999999999 6444457899999999999999977 566666655543321 1 13456666666555554
No 10
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.4e-35 Score=278.86 Aligned_cols=236 Identities=42% Similarity=0.647 Sum_probs=189.6
Q ss_pred chhhhhccCCCCCCCCCccccCC--CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGND--PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~--~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
++.++|+++++++||++|+++.+ .+..+.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 57889999999999999998742 2356899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------c-------------------C---CC---------------------
Q psy9113 102 AVHSIVVSKCSGDDMST----------------V-------------------P---AN--------------------- 122 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------~-------------------~---~~--------------------- 122 (281)
++++|+++.++.+++.+ . + ..
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 236 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence 99999999887765543 0 0 00
Q ss_pred --------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHH
Q psy9113 123 --------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187 (281)
Q Consensus 123 --------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~ 187 (281)
.....++++ |+|||||||+||||+++|+++...........+++.++|++++..|++|++|+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~ 316 (652)
T 1pg4_A 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYL 316 (652)
T ss_dssp HHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHT
T ss_pred HHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHH
Confidence 001235778 99999999999999999999887343455566889999999999999999998778
Q ss_pred HHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 188 VYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 188 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++.+|..|+++++. ++.+...++..+++.++++++|+++ .+|.++..+++...... ...++++++.++..|.
T Consensus 317 ~~~~L~~G~t~vl~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~~~--~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 317 LYGPLACGATTLMF--EGVPNWPTPARMCQVVDKHQVNILY---TAPTAIRALMAEGDKAI--EGTDRSSLRILGSVGE 388 (652)
T ss_dssp THHHHHTTCEEEEE--CSCTTSSSTTHHHHHHHHHTCSEEE---ECHHHHHHHHTTGGGGT--TTCCCTTCCEEEEESS
T ss_pred HHHHHHcCceEEEE--CCCCCCCCHHHHHHHHHHhCCeEEE---eCHHHHHHHHhcCcccc--ccCCcCceEEEEEecC
Confidence 89999999999999 5433347899999999999999977 66666677666543211 3345566655444443
No 11
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.6e-35 Score=278.36 Aligned_cols=230 Identities=15% Similarity=0.148 Sum_probs=192.4
Q ss_pred cccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 19 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
.+...|+.+++++.++++||++|+++ .++++||+||.++++++|+.|+++|+++|++|+++++|+++++++++||+
T Consensus 23 ~~~~~tl~~~~~~~a~~~Pd~~Av~~----~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 23 LYAHPTVVARFSEMAALHPHREAIRD----RFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp GGGSCCHHHHHHHHHHHCTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEc----CCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 45677999999999999999999995 56899999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC----------c--------------------C------CCchhhhcccc-eeeeecCCCC
Q psy9113 99 RIGAVHSIVVSKCSGDDMST----------V--------------------P------ANSERERKLKL-RKVVTGSTGK 141 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~----------~--------------------~------~~~~~~~~~~~-i~~TSGTTG~ 141 (281)
++|++++|+++.++.+++.+ + + .......++++ ++|||||||.
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGSTG~ 178 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGR 178 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSCEEEGGGCCCCCCCSSCCCCCTTSEEEEEEEBSSSSS
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCceeeeccCCcCCccccCCCCCCCCeEEEEECCCcccc
Confidence 99999999999999887766 0 0 00111246788 9999999999
Q ss_pred CceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 142 PKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 142 PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
||||+++|+++.+ .... ...+++.++++++...|++|..++ ..++.+|..|+++++. +. ..+++..+++.+++
T Consensus 179 PKgV~~th~~l~~-~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~--~~--~~~~~~~~~~~i~~ 251 (620)
T 4dg8_A 179 PKAIACTHAGITR-LCLG-QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLN--DL--GPLDPGVLRQLIGE 251 (620)
T ss_dssp CEEEEEEHHHHHH-HHSS-CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC--CS--SSCCHHHHHHHHHT
T ss_pred CeEEEEchHHHHH-HHHH-HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeC--cc--ccCCHHHHHHHHHH
Confidence 9999999999987 5444 556788999999999999999997 5789999999999997 32 25789999999999
Q ss_pred eccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 222 YVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 222 ~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++|+++ .+|.++..+++.... ...+|+.+..+|+.-.
T Consensus 252 ~~vt~~~---~~Ps~~~~l~~~~~~----~l~~lr~v~~gGe~l~ 289 (620)
T 4dg8_A 252 RGADSAW---LTASLFNTLVDLDPD----CLGGLRQLLTGGDILS 289 (620)
T ss_dssp TCCCEEE---EEHHHHHHHHHHCGG----GGTTCSEEEEESSCCC
T ss_pred hCCcEEE---ccHHHHHHHHhcChh----hCCCccEEEEEeCcCC
Confidence 9999987 666677766653221 3345666667777654
No 12
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=6.1e-35 Score=274.59 Aligned_cols=235 Identities=17% Similarity=0.186 Sum_probs=194.9
Q ss_pred eccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 17 DTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 17 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
+++|++.|+.+++++.++ ||++|+++ .++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus 21 ~~~~~~~~l~~~~~~~a~--pd~~Av~~----~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA 94 (617)
T 3rg2_A 21 KGYWQDLPLTDILTRHAA--SDSIAVID----GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA 94 (617)
T ss_dssp TTSCCCCCTTHHHHTTTT--CCSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cCCCCcCCHHHHHHHhhC--CCCeEEec----CCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 468999999999999998 99999995 578999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC---------------c-------------------------C----------------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST---------------V-------------------------P---------------- 120 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~---------------~-------------------------~---------------- 120 (281)
|+++|++++|+++..+.+++.+ . .
T Consensus 95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (617)
T 3rg2_A 95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAE 174 (617)
T ss_dssp HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCS
T ss_pred HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhccccc
Confidence 9999999999999988766544 0 0
Q ss_pred --CCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhH-HHHhhhccCc
Q psy9113 121 --ANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY-VVYGPLANGA 196 (281)
Q Consensus 121 --~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~-~~~~~l~~G~ 196 (281)
.......++++ ++|||||||.||||+++|+++.. ........+++.+++++++.+|++|.+++.. .++.++..|+
T Consensus 175 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~ 253 (617)
T 3rg2_A 175 DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYY-SVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG 253 (617)
T ss_dssp SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHH-HHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTC
T ss_pred ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHH-HHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCC
Confidence 00011235778 99999999999999999999998 7777777889999999999999999988754 5899999999
Q ss_pred eEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccc-cccccchhhhhccCCCcc
Q psy9113 197 TSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFF-CILYTISSLMWAGSLDIR 267 (281)
Q Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~-~~~~~L~sl~~~g~~g~~ 267 (281)
++++. + ..++..+++.++++++|++. .+|.++..+++....... ....+|+.+..+|+.-..
T Consensus 254 ~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~ 316 (617)
T 3rg2_A 254 TVVLA--A----DPSATLCFPLIEKHQVNVTA---LVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSA 316 (617)
T ss_dssp EEEEC--S----SCCHHHHHHHHHHTTCCEEE---ECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCH
T ss_pred EEEEe--C----CCCHHHHHHHHHHhCCcEEE---cchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCH
Confidence 99998 4 46888999999999999987 666666777766543221 123345555566665543
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.5e-35 Score=272.87 Aligned_cols=231 Identities=16% Similarity=0.162 Sum_probs=186.5
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+|+.+.|++.++++||++|+++ .++++||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|+
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~----~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~ 76 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVW----RDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGH 76 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHCCCceEEEe----CCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 5789999999999999999996 468999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC--------------------cC----------------------CCchhhhcccc-eeeeecCC
Q psy9113 103 VHSIVVSKCSGDDMST--------------------VP----------------------ANSERERKLKL-RKVVTGST 139 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~--------------------~~----------------------~~~~~~~~~~~-i~~TSGTT 139 (281)
+++|+++.++.+++.+ .+ .......++++ ++||||||
T Consensus 77 v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 156 (512)
T 3fce_A 77 AYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGST 156 (512)
T ss_dssp CEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCCSSEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC--
T ss_pred EEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccccccceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCC
Confidence 9999999998887766 00 00111236778 99999999
Q ss_pred CCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceee
Q psy9113 140 GKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITG 219 (281)
Q Consensus 140 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i 219 (281)
|.||||+++|+++.. ........+++.++|+++..+|++|.+++ ..++.++..|+++++. +. ...+++..+++.+
T Consensus 157 G~PKgv~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~--~~-~~~~~~~~~~~~i 231 (512)
T 3fce_A 157 GNPKGVQITYNCLVS-FTKWAVEDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAI--DK-DMIARPKDLFASL 231 (512)
T ss_dssp --CEEEEEEHHHHHH-HHHHHHHHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEEC--CH-HHHHSHHHHHHHH
T ss_pred CCCceEEEehHHHHH-HHHHHHHhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEEC--CH-HHhhCHHHHHHHH
Confidence 999999999999998 77777778899999999999999999997 4789999999999999 41 1137899999999
Q ss_pred eeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 220 HTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 220 ~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++++|+++ .+|.++..++........ ...+|+.+..+|+.-.
T Consensus 232 ~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~~~~~G~~l~ 274 (512)
T 3fce_A 232 EQSDIQVWT---STPSFAEMCLMEASFSES-MLPNMKTFLFCGEVLP 274 (512)
T ss_dssp HHHCCCEEE---ECHHHHHHHTTSTTCSTT-TSTTCCEEEECSSCCC
T ss_pred HHcCCcEEE---ecHHHHHHHHhhccccch-hCccccEEEEecCcCC
Confidence 999999976 556666665554433221 2334555555565544
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=5.2e-35 Score=268.88 Aligned_cols=232 Identities=19% Similarity=0.149 Sum_probs=186.3
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+|+.++|.+.++++||++|+.+. +.++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 79 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVP--ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET--TTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHhCCCceEEEEc--CCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCc
Confidence 58999999999999999999863 2368999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-----------c--CC------------------------------C-----chhhhcccc-ee
Q psy9113 103 VHSIVVSKCSGDDMST-----------V--PA------------------------------N-----SERERKLKL-RK 133 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-----------~--~~------------------------------~-----~~~~~~~~~-i~ 133 (281)
+++|+++.++.+++.+ . .. . .....++++ ++
T Consensus 80 ~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 159 (504)
T 1t5h_X 80 VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIF 159 (504)
T ss_dssp EEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTEETTEECCCSCCCCCCCCCTTSEEEEE
T ss_pred EEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchhhcCcccccCCccCCCCCCCCCeEEEE
Confidence 9999999988776554 0 00 0 011235678 99
Q ss_pred eeecCCCCCceEEEechhHHHHHHHhhhhhccC--CCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccc
Q psy9113 134 VVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDY--KPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCT 211 (281)
Q Consensus 134 ~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~ 211 (281)
|||||||.||||+++|+++.. ........+++ .+++++++.+|++|.+|+...++.++..|+++++. + .++
T Consensus 160 ~TSGTTG~PKgV~~sh~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~--~----~~~ 232 (504)
T 1t5h_X 160 YTSGTTGLPKAAIIPQRAAES-RVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV--E----EFR 232 (504)
T ss_dssp ECCC---CCCEEEEEGGGHHH-HHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC--S----SCC
T ss_pred eCCCCCCCCCEEEecHHHHHH-HHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC--C----CCC
Confidence 999999999999999999998 66666666777 78899999999999999866789999999999999 5 578
Q ss_pred ccccceeeeeeccceeccCCchhHHHHHHHHhhcc-ccccccccchhhhhccCCCc
Q psy9113 212 ADVGWITGHTYVVYGPLANGATSVIVSETLKMLNT-NFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 212 ~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~L~sl~~~g~~g~ 266 (281)
+..+++.++++++|+++ .+|.++..+++.... .......+|+.+..+|+.-.
T Consensus 233 ~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~ 285 (504)
T 1t5h_X 233 PVDALQLVQQEQVTSLF---ATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMP 285 (504)
T ss_dssp HHHHHHHHHHHTCCEEE---CCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCC
T ss_pred HHHHHHHHHHhCCeEEE---eChHHHHHHHhhhccccccccCccccEEEEcCCcCC
Confidence 99999999999999977 566677777766522 11112234455555555544
No 15
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=8e-35 Score=269.81 Aligned_cols=238 Identities=17% Similarity=0.091 Sum_probs=191.6
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
....|+.++|.+.++++||++|+++.+.+.++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||++
T Consensus 15 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 94 (541)
T 1v25_A 15 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG 94 (541)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 34568999999999999999999864334568999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC--------------------------cCC-------C--------------------chhh
Q psy9113 100 IGAVHSIVVSKCSGDDMST--------------------------VPA-------N--------------------SERE 126 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~--------------------------~~~-------~--------------------~~~~ 126 (281)
+|++++|+++.++.+++.+ .+. . ....
T Consensus 95 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (541)
T 1v25_A 95 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVP 174 (541)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCCCCCC
T ss_pred cCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCcccCC
Confidence 9999999999998877666 000 0 0012
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHh--hhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATT--HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
.++++ ++|||||||.||||+++|+++.. .... ....+++.++|++++.+|++|.+|+. .++.++..|+++++.
T Consensus 175 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~~G~~~v~~-- 250 (541)
T 1v25_A 175 ERAACGMAYTTGTTGLPKGVVYSHRALVL-HSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPYAATLVGAKQVLP-- 250 (541)
T ss_dssp TTSEEEEEEECSSSSSCEEEEEEHHHHHH-HHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHHHHHHHTCEEEEC--
T ss_pred CCCcEEEEECCCCCCCCcEeeeehHHHHH-HHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHHHHHhcCceEEee--
Confidence 25677 99999999999999999999987 4433 33456788999999999999999974 678899999999998
Q ss_pred CCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcce
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRM 268 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~ 268 (281)
+. .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+.-...
T Consensus 251 ~~---~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~i~~gG~~l~~~ 308 (541)
T 1v25_A 251 GP---RLDPASLVELFDGEGVTFTA---GVPTVWLALADYLESTGH-RLKTLRRLVVGGSAAPRS 308 (541)
T ss_dssp TT---CCSHHHHHHHHHHTTCCEEE---ECHHHHHHHHHHHHHHTC-CCSSCCEEEECSSCCCHH
T ss_pred CC---CCCHHHHHHHHHhcCeeEEe---cchHHHHHHHhhhhccCC-cchhccEEEECCCCCCHH
Confidence 42 46999999999999999977 666677777766543221 223455555666654433
No 16
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.6e-35 Score=271.96 Aligned_cols=239 Identities=17% Similarity=0.141 Sum_probs=185.7
Q ss_pred eeccccccchhhhhccCCCCCCCCCcccc-CCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHH
Q psy9113 16 VDTFWQTETGGHVLTPLPGCTPMKPGAAG-NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTM 94 (281)
Q Consensus 16 ~~~~~~~~tl~~~l~~~a~~~pd~~a~~~-~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~ 94 (281)
++..+.+.|+.++|.+.++++||++|++. .+...++++||+||.++++++|+.|+++|+++||+|+++++|++++++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 92 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPV 92 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHH
Confidence 34566778999999999999999999761 12235689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeecCCCCCCcCC--------------------------cC---------CC-----------------
Q psy9113 95 LACARIGAVHSIVVSKCSGDDMST--------------------------VP---------AN----------------- 122 (281)
Q Consensus 95 lA~~~~G~~~v~l~~~~~~~~~~~--------------------------~~---------~~----------------- 122 (281)
+||+++|++++|+++.++.+++.+ .+ ..
T Consensus 93 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 93 LGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHL 172 (550)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHC
T ss_pred HHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccc
Confidence 999999999999999998887766 00 00
Q ss_pred ------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhh---ccCCCCCEEEEeCchhhhhhHhH
Q psy9113 123 ------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV---FDYKPGDIYWCTADVGWITGHTY 186 (281)
Q Consensus 123 ------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~gl~~ 186 (281)
.....++++ |+|||||||.||||+++|+++.. ........ .++.+++++++.+|++|.+|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~- 250 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACV-RFSHARDPIFGNQIIPDTAILSVVPFHHGFGMF- 250 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHH-HHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH-
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHH-HHHHhhhhhccccCCCCcEEEEechHHHHHHHH-
Confidence 000124677 99999999999999999999988 54444433 5678899999999999999984
Q ss_pred HHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 187 VVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 187 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.++.++..|+++++. + .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|++-.
T Consensus 251 ~~~~~l~~G~~~~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~i~~gG~~l~ 320 (550)
T 3rix_A 251 TTLGYLICGFRVVLM--Y----RFEEELFLRSLQDYKIQSAL---LVPTLFSFFAKSTLIDKY-DLSNLHEIASGGAPLS 320 (550)
T ss_dssp HHHHHHHHTCEEEEC--S----SCCHHHHHHHHHHTTCSEEE---ECHHHHHHHHHCCGGGGS-CCTTCCEEEECSSCCC
T ss_pred HHHHHHHcCCEEEEe--C----CCCHHHHHHHHHHcCCeEEE---eCcHHHHHHHhCcccccc-CcccccEEEEecCCCC
Confidence 678899999999999 5 68999999999999999977 566666776665443221 2233444445555443
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=6e-35 Score=272.26 Aligned_cols=228 Identities=16% Similarity=0.147 Sum_probs=188.9
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
...++.++|++.++++||++|+++ .++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLH----EADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHCCCCeEEEC----CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 356899999999999999999995 5689999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC-------------------c-------------------CCCchhhhcccc-eeeeecCCCC
Q psy9113 101 GAVHSIVVSKCSGDDMST-------------------V-------------------PANSERERKLKL-RKVVTGSTGK 141 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~-------------------~-------------------~~~~~~~~~~~~-i~~TSGTTG~ 141 (281)
|++++|+++.++.+++.+ . ........++++ |+|||||||.
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 228 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGR 228 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSSEEEECCC-------CCCCCCCCCTTSEEEEECCSSCCSS
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCCcceeeeccccccccccccCCCCCCCCeEEEEECCcCCCC
Confidence 999999999999887766 0 000112346778 9999999999
Q ss_pred CceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 142 PKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 142 PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
||||+++|+++.. .... ....++.++|+++..+|++|..+. ..++.++..|+++++. +. ..+++..+++.+++
T Consensus 229 PKgV~~th~~l~~-~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~--~~--~~~~~~~~~~~i~~ 301 (570)
T 4gr5_A 229 PKGVMSPHRALTG-TYLG-QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQ--SG--QNPDPLEIGELVAR 301 (570)
T ss_dssp CCCEEEEHHHHHH-HHSS-CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEEC--SS--SSCCHHHHHHHHHH
T ss_pred CeEEEEecHHHHH-HHHh-hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEc--CC--ccCCHHHHHHHHHH
Confidence 9999999999877 4433 455678889999999999987665 5789999999999998 42 25789999999999
Q ss_pred eccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 222 YVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 222 ~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++|++. .+|.++..+++.... ...+|+.+..+|++-.
T Consensus 302 ~~vt~~~---~~P~~~~~l~~~~~~----~~~~lr~~~~gG~~l~ 339 (570)
T 4gr5_A 302 HGVTMLQ---LSASLFNFLVDEVPE----AFEGVRYAITGGEPAS 339 (570)
T ss_dssp HTCCEEE---EEHHHHHHHHHHCGG----GGTTCSEEEEESSCCC
T ss_pred cCCcEEE---ecHHHHHHHHhhchh----hCCCceEEEEecccCC
Confidence 9999977 666777777765432 3345666666666544
No 18
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.7e-34 Score=269.18 Aligned_cols=244 Identities=16% Similarity=0.033 Sum_probs=192.0
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTM 94 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~ 94 (281)
.+..+.+..|+.++|++.++.+|+.+++.+. .+.++++||+||.++++++|+.|+++|+++||+|+++++|++++++++
T Consensus 13 ~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~-~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (576)
T 3gqw_A 13 LPMRYADFPTLVDALDYAALSSAGMNFYDRR-CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAF 91 (576)
T ss_dssp -CCCCSCCSSHHHHHHHHTTSSCEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHH
T ss_pred CCcccCCCCcHHHHHHHHhhCCCCeEEeCCC-CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 3445556679999999999999998887642 234589999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeecCCCC-------CCcCC--------------------------cC------------------CCc
Q psy9113 95 LACARIGAVHSIVVSKCSG-------DDMST--------------------------VP------------------ANS 123 (281)
Q Consensus 95 lA~~~~G~~~v~l~~~~~~-------~~~~~--------------------------~~------------------~~~ 123 (281)
+||+++|++++|+++.++. +++.+ .+ ...
T Consensus 92 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (576)
T 3gqw_A 92 FACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALPEADVALQ 171 (576)
T ss_dssp HHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHHHHHTSCCCCCCCC
T ss_pred HHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchhhhhcccccccccC
Confidence 9999999999999999883 33333 00 000
Q ss_pred hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh-hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEe
Q psy9113 124 ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY-VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIV 201 (281)
Q Consensus 124 ~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~-~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~ 201 (281)
....++++ ++|||||||.||||+++|+++.. ....... .+++.++|+++..+|++|.+|+...++.++..|+++++.
T Consensus 172 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (576)
T 3gqw_A 172 RPVPNDIAYLQYTSGSTRFPRGVIITHREVMA-NLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (576)
T ss_dssp CCCTTSEEEEECTTSCSSSCCCEEEEHHHHHH-HHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEEC
T ss_pred CCCCCCeEEEEeCCCCCCCCceEEeeHHHHHH-HHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEc
Confidence 11236778 99999999999999999999988 5555443 378899999999999999999877788899999999998
Q ss_pred cCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 202 SLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+.....+++..+++.++++++|+++ .+|.++..+.+.+..... ...++++++.+...|.
T Consensus 251 --~~~~~~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~~~~~~-~~~~l~~lr~~~~gg~ 309 (576)
T 3gqw_A 251 --RTQDFAMRPLQWLKLISKNRGTVSV---APPFGYELCQRRVNEKDL-AELDLSCWRVAGIGAE 309 (576)
T ss_dssp --CHHHHHHCTTHHHHHHHHTTCCEEE---ECHHHHHHHHHSCCHHHH-TTCCCTTCCEEEECSS
T ss_pred --chhHhhhCHHHHHHHHHHhCCeEEE---cCHHHHHHHHHHhccccc-ccCChhhhHhhhccCc
Confidence 4222236899999999999999977 666666655554443322 3455666665544443
No 19
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.4e-34 Score=265.81 Aligned_cols=228 Identities=14% Similarity=0.108 Sum_probs=191.3
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+|+.++|.+.++++||++|+++ .++++||+||.++++++|+.|+++ +||+|+++++|+++++++++||+++|+
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~----~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Ga 73 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITD----GQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANI 73 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEEC----SSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhcCCceEEEe----CCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 4788999999999999999995 568999999999999999999986 899999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-----------------------c--C-C-------------------------------C---
Q psy9113 103 VHSIVVSKCSGDDMST-----------------------V--P-A-------------------------------N--- 122 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-----------------------~--~-~-------------------------------~--- 122 (281)
+++|+++.++.+++.+ . . . .
T Consensus 74 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (501)
T 3ipl_A 74 EIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPS 153 (501)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHH
T ss_pred EEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcc
Confidence 9999999998877666 0 0 0 0
Q ss_pred ----chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 123 ----SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 123 ----~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
.....++++ ++|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+|+. .++.++..|++
T Consensus 154 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~ 231 (501)
T 3ipl_A 154 NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYA-SAIGCKESLGFDRDTNWLSVLPIYHISGLS-VLLRAVIEGFT 231 (501)
T ss_dssp HHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHH-HHHHHHHHTCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCE
T ss_pred cccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHH-HHHHHHHhhCCCccCEEEEeCcHHHHHHHH-HHHHHHHcCce
Confidence 001236778 99999999999999999999998 777777788999999999999999999985 58999999999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcceeehh
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRMWCMV 272 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~~~~~ 272 (281)
+++. + .++++.+++.++++++|+++ .+|.++..+++.... ...+|+.+..+|+.-.....+.
T Consensus 232 ~~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~----~~~~lr~i~~gG~~l~~~~~~~ 293 (501)
T 3ipl_A 232 VRIV--D----KFNAEQILTMIKNERITHIS---LVPQTLNWLMQQGLH----EPYNLQKILLGGAKLSATMIET 293 (501)
T ss_dssp EEEC--S----SCCHHHHHHHHHHSCCCEEE---ECHHHHHHHHHHTCC----SCTTCCEEEECSSCCCHHHHHH
T ss_pred EEeC--C----CCCHHHHHHHHHHcCCcEEE---chHHHHHHHHhcCCC----CcCcccEEEEeCCCCCHHHHHH
Confidence 9999 5 68999999999999999977 566667777766544 2237788888887766544443
No 20
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.9e-34 Score=265.49 Aligned_cols=231 Identities=17% Similarity=0.128 Sum_probs=189.7
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
+|+.+.|++.|+++||++|+++ .++++||+||.++++++|+.|.+. |.++|++|+++++|+++++++++||+++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~----~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G 76 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRS----QGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAG 76 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHCCCCeEEEc----CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhC
Confidence 4789999999999999999995 578999999999999999999885 78899999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------c------------------------------CCCchhhhcccc-eeeeecCCC
Q psy9113 102 AVHSIVVSKCSGDDMST----------V------------------------------PANSERERKLKL-RKVVTGSTG 140 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------~------------------------------~~~~~~~~~~~~-i~~TSGTTG 140 (281)
++++|+++.++.+++.+ + +.......++++ ++|||||||
T Consensus 77 ~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 156 (511)
T 3e7w_A 77 HPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTG 156 (511)
T ss_dssp CCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTS
T ss_pred CEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCC
Confidence 99999999998887766 0 000111235778 999999999
Q ss_pred CCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeee
Q psy9113 141 KPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGH 220 (281)
Q Consensus 141 ~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~ 220 (281)
.||||+++|+++.. ........+++.++++++..+|++|.+++ ..++.++..|+++++. +. ...+++..+++.++
T Consensus 157 ~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~--~~-~~~~~~~~~~~~i~ 231 (511)
T 3e7w_A 157 NPKGVQISAANLQS-FTDWICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCV--TK-DAVNKPKVLFEELK 231 (511)
T ss_dssp SCEEEEEEHHHHHH-HHHHHHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEEC--CH-HHHHSHHHHHHHHH
T ss_pred CCCEEEEcHHHHHH-HHHHHHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEc--Ch-hhhcCHHHHHHHHH
Confidence 99999999999998 77777778889999999999999999997 5789999999999998 41 11368999999999
Q ss_pred eeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 221 TYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 221 ~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++++|+++ .+|.++..++........ ....++.+..+|+.-.
T Consensus 232 ~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~l~~~~~~G~~l~ 273 (511)
T 3e7w_A 232 KSGLNVWT---STPSFVQMCLMDPGFSQD-LLPHADTFMFCGEVLP 273 (511)
T ss_dssp HHCCSEEE---ECHHHHHHHHTSTTCSTT-TCTTCCEEEECSSCCC
T ss_pred HcCCcEEE---ecHHHHHHHHhccccccc-cCCcccEEEEecCCCC
Confidence 99999977 556666666665443221 2234455555665543
No 21
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4.5e-34 Score=265.90 Aligned_cols=230 Identities=15% Similarity=0.136 Sum_probs=183.0
Q ss_pred cccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 19 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
+....|+.++|.+.++++||++|+++ .++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+
T Consensus 35 ~~~~~~l~~~l~~~a~~~p~~~Al~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 110 (563)
T 1amu_A 35 YPRDKTIHQLFEEQVSKRPNNVAIVC----ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVL 110 (563)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHCCCCeEEEe----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 34456999999999999999999995 46899999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC----------------------cCC--------------------Cchhhhcccc-eeee
Q psy9113 99 RIGAVHSIVVSKCSGDDMST----------------------VPA--------------------NSERERKLKL-RKVV 135 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~----------------------~~~--------------------~~~~~~~~~~-i~~T 135 (281)
++|++++|+++.++.+++.+ ... ......++++ ++||
T Consensus 111 ~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T 190 (563)
T 1amu_A 111 KAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYT 190 (563)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSCCSCCCCCCCTTSEEEEEEE
T ss_pred HhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhccccCccCCCCCCCCCeEEEEEC
Confidence 99999999999998877766 000 0011235778 9999
Q ss_pred ecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccccc
Q psy9113 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVG 215 (281)
Q Consensus 136 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 215 (281)
|||||.||||+++|+++.. ........+++.++|+++...|++|..++ ..++.+|+.|+++++. +.. ...++..+
T Consensus 191 SGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~--~~~-~~~~~~~~ 265 (563)
T 1amu_A 191 SGTTGNPKGTMLEHKGISN-LKVFFENSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYII--LKD-TINDFVKF 265 (563)
T ss_dssp C-----CEEEEEESHHHHH-HHHHHHHTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC--CHH-HHTCHHHH
T ss_pred CCCCCCCcEEEEehHHHHH-HHHHHHHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEc--ChH-hhcCHHHH
Confidence 9999999999999999988 66666777889999999999999999987 4788999999999998 421 13688999
Q ss_pred ceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 216 WITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 216 ~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
++.++++++|++. .+|.++..+ ... ...+|+.+..+|+.-..
T Consensus 266 ~~~i~~~~~t~~~---~~P~~~~~l----~~~---~~~~lr~~~~gG~~l~~ 307 (563)
T 1amu_A 266 EQYINQKEITVIT---LPPTYVVHL----DPE---RILSIQTLITAGSATSP 307 (563)
T ss_dssp HHHHHHTTCCEEE---ECHHHHTTS----CTT---TCCSCSEEEEESSCCCH
T ss_pred HHHHHHcCCcEEE---eCHHHHHHH----Hhc---ccccccEEEEEEecCCH
Confidence 9999999999976 555544332 211 22456666666665543
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2e-33 Score=276.76 Aligned_cols=232 Identities=18% Similarity=0.139 Sum_probs=188.6
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..|+.++|.+.++++||++|+++. ..++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~G 137 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLING--PTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRG 137 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEET--TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC--CCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 479999999999999999999964 346899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC---------------------------------cCC---------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST---------------------------------VPA--------------------------- 121 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~---------------------------------~~~--------------------------- 121 (281)
++++|++|.++.+++.+ ...
T Consensus 138 a~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (979)
T 3tsy_A 138 ATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVI 217 (979)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGGGTSSCCSGGGGGS
T ss_pred CEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHHHHhhccccccccC
Confidence 99999999998887766 000
Q ss_pred -Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhh----hhccCCCCCEEEEeCchhhhhhHhHHHHhhhccC
Q psy9113 122 -NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHK----YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195 (281)
Q Consensus 122 -~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G 195 (281)
......++++ |+|||||||.||||+++|+++.. ...... ..+++.++|++++.+|++|.+|+...++.++..|
T Consensus 218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G 296 (979)
T 3tsy_A 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT-SVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVG 296 (979)
T ss_dssp CCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHH-HHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHT
T ss_pred CcCCCCccceEEEEeCCCCCCCCeEEEechHHHHH-HHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcC
Confidence 0001236778 99999999999999999999988 443332 2356788999999999999999877789999999
Q ss_pred ceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 196 ATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++++. + .++++.+++.++++++|++. .+|.++..+++....... ...+|+.+..+|++..
T Consensus 297 ~~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~~~~gg~~l~ 357 (979)
T 3tsy_A 297 AAILIM--P----KFEINLLLELIQRCKVTVAP---MVPPIVLAIAKSSETEKY-DLSSIRVVKSGAAPLG 357 (979)
T ss_dssp CEEEEC--S----SCCHHHHHHHHHHHTCCEEE---ECHHHHHHHHHCGGGGTS-CCTTCCEEEESSCCCC
T ss_pred cEEEEe--C----CCCHHHHHHHHHHhCCeEEE---cHHHHHHHHHhCccccCC-CccceEEEEEcCCCCC
Confidence 999999 5 67899999999999999976 556666666665544221 2233444444555443
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=9.7e-34 Score=261.34 Aligned_cols=234 Identities=14% Similarity=0.048 Sum_probs=184.3
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
+..|+.+.|++.++++||++|+.+ .++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDC----LGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHCCCCcceec----CCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 346899999999999999999995 5789999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC--------------------------------------cC--CCchhhhcccc-eeeeecCC
Q psy9113 101 GAVHSIVVSKCSGDDMST--------------------------------------VP--ANSERERKLKL-RKVVTGST 139 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~--------------------------------------~~--~~~~~~~~~~~-i~~TSGTT 139 (281)
|++++|+++.++.+++.+ .+ .......++++ ++||||||
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 157 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTT 157 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC--
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCC
Confidence 999999999999887766 00 01112336778 99999999
Q ss_pred CCCceEEEechhHHHHHHHhhhhh--ccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccce
Q psy9113 140 GKPKGVLHTTGGYLLYAATTHKYV--FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWI 217 (281)
Q Consensus 140 G~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~ 217 (281)
|.||||+++|+++.. ........ ++..++++++...|++|..++ ..++.++..|+++++. +. ....++..+++
T Consensus 158 G~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~--~~-~~~~~~~~~~~ 232 (521)
T 3l8c_A 158 GQPKGVQISHDNLLS-FTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFAL--PK-ELVADFKQLFT 232 (521)
T ss_dssp -CCCEEEEEHHHHHH-HHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEEC--CG-GGTTCHHHHHH
T ss_pred CCCCEEEEehHHHHH-HHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEc--CH-HHhhCHHHHHH
Confidence 999999999999987 55444433 677889999999999999886 5788999999999998 42 12358899999
Q ss_pred eeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 218 TGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 218 ~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
.++++++|.+. .+|.++..++........ ...+|+.+..+|+.-..
T Consensus 233 ~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~~~~gG~~l~~ 278 (521)
T 3l8c_A 233 TIAQLPVGIWT---STPSFADMAMLSDDFCQA-KMPALTHFYFDGEELTV 278 (521)
T ss_dssp HHHHSCCSEEE---ECHHHHHHHHTSTTCSTT-TCTTCCEEEECSSCCCH
T ss_pred HHHHcCCcEEE---eCCCHHHHHhhhhccccc-cCccceEEEEecccCCH
Confidence 99999999976 555665555544433221 23344555555655443
No 24
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1e-33 Score=264.44 Aligned_cols=230 Identities=21% Similarity=0.162 Sum_probs=186.1
Q ss_pred chh-hhhccCCCCCCCCCccccC-CCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 24 TGG-HVLTPLPGCTPMKPGAAGN-DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 24 tl~-~~l~~~a~~~pd~~a~~~~-~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
|+. ++|++.|+++||++|+++. +.+..+.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 56 n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~G 135 (580)
T 3etc_A 56 NFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLG 135 (580)
T ss_dssp CHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCC
Confidence 444 9999999999999999864 23456899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------------------cC-C-------------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST----------------------------VP-A------------------------------- 121 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------------------~~-~------------------------------- 121 (281)
++++|+++.++.+++.+ .+ .
T Consensus 136 av~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (580)
T 3etc_A 136 AIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFER 215 (580)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCCC
T ss_pred EEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCccccc
Confidence 99999999998776655 00 0
Q ss_pred C---chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 122 N---SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 122 ~---~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
+ .....++++ ++|||||||.||+|+++|.++.. .........++.++++++...|++|..++...++.++..|++
T Consensus 216 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 216 PTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG-HILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp CCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHH-HHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred CccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHH-HHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 0 012236778 99999999999999999998887 666556667888999999999999998877678899999999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhh---hccCCCc
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLM---WAGSLDI 266 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~---~~g~~g~ 266 (281)
+++.+.+ .++++.+++.++++++|+++ .+|.++..+++. .. ...++++++ .+|++-.
T Consensus 295 ~~~~~~~----~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~-~~----~~~~l~~lr~i~~gGe~l~ 354 (580)
T 3etc_A 295 VFVYDYD----RFEAKNMLEKASKYGVTTFC---APPTIYRFLIKE-DL----SHYNFSTLKYAVVAGEPLN 354 (580)
T ss_dssp EEEEECS----SCCHHHHHHHHHHHTCCEEE---ECHHHHHHHHTS-CC-------CCTTCCEEEECSSCCC
T ss_pred EEEecCC----CCCHHHHHHHHHHHCCeEEE---ccHHHHHHHHhc-cc----ccCCCccceEEEEccCCCC
Confidence 9987222 67999999999999999987 677777666653 21 334455554 4555443
No 25
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.1e-33 Score=259.87 Aligned_cols=226 Identities=16% Similarity=0.129 Sum_probs=180.8
Q ss_pred hhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEE
Q psy9113 26 GHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105 (281)
Q Consensus 26 ~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v 105 (281)
.+++.+.++++||++++.... .+++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~l~~~~a~~~p~~~a~~~~~-~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~v 81 (503)
T 4fuq_A 3 ANLFARLFDKLDDPHKLAIET-AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYL 81 (503)
T ss_dssp CCHHHHHHSCCSCTTSEEEEE-TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEE
T ss_pred hhHHHHHHHhCCCCceEEEec-CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEE
Confidence 356777888999999987321 2457899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCcCC----------c-----------------------CC------------------Cchhhhcccc-ee
Q psy9113 106 IVVSKCSGDDMST----------V-----------------------PA------------------NSERERKLKL-RK 133 (281)
Q Consensus 106 ~l~~~~~~~~~~~----------~-----------------------~~------------------~~~~~~~~~~-i~ 133 (281)
|+++.++.+++.+ + .. ......++++ ++
T Consensus 82 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~ 161 (503)
T 4fuq_A 82 PLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAIL 161 (503)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEEEEE
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeEEEE
Confidence 9999998887766 0 00 0011236778 99
Q ss_pred eeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccc
Q psy9113 134 VVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTAD 213 (281)
Q Consensus 134 ~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~ 213 (281)
|||||||.||||+++|+++.. ........+++.++|+++..+|++|.+|+...++.++..|+++++. + .++++
T Consensus 162 ~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~--~----~~~~~ 234 (503)
T 4fuq_A 162 YTSGTTGRSKGAMLSHDNLAS-NSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFL--P----KFDPD 234 (503)
T ss_dssp ECC--CCSCCEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC--S----SCCHH
T ss_pred ECCCcccCCeEEEEeHHHHHH-HHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc--C----CCCHH
Confidence 999999999999999999998 7777778889999999999999999999876778899999999999 5 68999
Q ss_pred ccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 214 VGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 214 ~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
.+++.++ ++|+++ ..|.++..+++....... ...+|+.+..+|++-
T Consensus 235 ~~~~~i~--~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~~~~gg~~l 280 (503)
T 4fuq_A 235 KILDLMA--RATVLM---GVPTFYTRLLQSPRLTKE-TTGHMRLFISGSAPL 280 (503)
T ss_dssp HHHHHHT--TCCEEE---ECHHHHHHHHTCTTCSTT-TTTTCCEEEECSSCC
T ss_pred HHHHHHh--hcCEEE---EHHHHHHHHHhCCCcccc-chhhcEEEEECCCCC
Confidence 9999998 788866 556666777665543221 223344444555543
No 26
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=5.1e-33 Score=257.01 Aligned_cols=229 Identities=20% Similarity=0.147 Sum_probs=181.3
Q ss_pred chhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
++.+++.+.++ +||++|+++ .++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 99 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYID----DTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVV 99 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEEC----SSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCE
T ss_pred HHHHHHHhhhc-cCCceEEEe----CCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCce
Confidence 58899999999 999999995 3578999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC----------------------c----C-C-------C----------c---------------h
Q psy9113 104 HSIVVSKCSGDDMST----------------------V----P-A-------N----------S---------------E 124 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~----------------------~----~-~-------~----------~---------------~ 124 (281)
++|+++.++.+++.+ . + . . . .
T Consensus 100 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (529)
T 2v7b_A 100 PVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAA 179 (529)
T ss_dssp EEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCC
T ss_pred EEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccC
Confidence 999999988776555 0 0 0 0 0 0
Q ss_pred hhhcccc-eeeeecCCCCCceEEEechhH-HHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEec
Q psy9113 125 RERKLKL-RKVVTGSTGKPKGVLHTTGGY-LLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202 (281)
Q Consensus 125 ~~~~~~~-i~~TSGTTG~PK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~ 202 (281)
...++++ ++|||||||.||||+++|+++ .. ........+++.++|+++..+|++|.+|+...++.++..|+++++.
T Consensus 180 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~- 257 (529)
T 2v7b_A 180 TGCDDIAFWLYSSGSTGKPKGTVHTHANLYWT-AELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM- 257 (529)
T ss_dssp CCTTSEEEEEEC-----CCCEEEEEHHHHHHH-HHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC-
T ss_pred CCCCCeEEEEECCCCCCCCceEEEEhhHHHHH-HHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe-
Confidence 1125677 999999999999999999999 55 5555556678899999999999999999877788899999999987
Q ss_pred CCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 203 LPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
+. .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+....
T Consensus 258 -~~---~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~~~~gGe~l~~ 314 (529)
T 2v7b_A 258 -AE---RPTADAIFARLVEHRPTVFY---GVPTLYANMLVSPNLPAR-ADVAIRICTSAGEALPR 314 (529)
T ss_dssp -CS---CCCHHHHHHHHHHSCCSEEE---ECHHHHHHHHTCTTCCCG-GGCCCCEEEECSSCCCH
T ss_pred -cC---CCCHHHHHHHHHHhCCEEEE---ecHHHHHHHHhCcccccc-cCCceEEEEEcCCCCCH
Confidence 42 57899999999999999977 556666776665433221 12356666666666543
No 27
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.7e-33 Score=259.01 Aligned_cols=229 Identities=15% Similarity=0.059 Sum_probs=183.6
Q ss_pred cchhh-hhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 23 ETGGH-VLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 23 ~tl~~-~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
.|+.+ .+.+.++++ |++|+++. ..++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~G 101 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNA--VTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEET--TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHT
T ss_pred CcHHHHHHHhhhccc-CCceEEEc--CCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhC
Confidence 58999 888888889 99999863 246899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC--------------------------cC-------------------------------CCc-
Q psy9113 102 AVHSIVVSKCSGDDMST--------------------------VP-------------------------------ANS- 123 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~--------------------------~~-------------------------------~~~- 123 (281)
++++|+++.++.+++.+ .+ .+.
T Consensus 102 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (548)
T 2d1s_A 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQAS 181 (548)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGG
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCcc
Confidence 99999999998776655 00 000
Q ss_pred hhh-----h-cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhh---ccCCCCCEEEEeCchhhhhhHhHHHHhhhc
Q psy9113 124 ERE-----R-KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV---FDYKPGDIYWCTADVGWITGHTYVVYGPLA 193 (281)
Q Consensus 124 ~~~-----~-~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~ 193 (281)
... . ++++ ++|||||||.||||+++|+++.. ........ +++.++|+++..+|++|.+|+...++.++
T Consensus 182 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l- 259 (548)
T 2d1s_A 182 SFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVT-RFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI- 259 (548)
T ss_dssp GCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHH-HHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-
T ss_pred cccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHH-HHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-
Confidence 011 2 5677 99999999999999999999988 55555544 67888999999999999999866677888
Q ss_pred cCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 194 NGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 194 ~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.|+++++. + .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+.-.
T Consensus 260 ~G~~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~i~~gG~~l~ 322 (548)
T 2d1s_A 260 CGFRVVML--T----KFDEETFLKTLQDYKCTSVI---LVPTLFAILNKSELLNKY-DLSNLVEIASGGAPLS 322 (548)
T ss_dssp TTCEEEEC--C----CCCHHHHHHHHHHTTEEEEE---ECHHHHHHHHHCSCGGGS-CCTTCCEEEECSSCCC
T ss_pred cCcEEEEc--C----CCCHHHHHHHHHHcCCcEEE---ecHHHHHHHHhCcccccc-cccceeEEEEcCccCC
Confidence 99999998 5 57999999999999999977 566666776664433211 2223444445555443
No 28
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.4e-33 Score=257.90 Aligned_cols=231 Identities=14% Similarity=0.127 Sum_probs=179.1
Q ss_pred CCCCceeccccccchhhhhccCCCCCCC-CCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHH
Q psy9113 11 GKCSIVDTFWQTETGGHVLTPLPGCTPM-KPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLE 89 (281)
Q Consensus 11 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd-~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~ 89 (281)
.+..+++.....+|+.+.|.+.++++|+ ++|+++ .++++||+||.++++++|+.|. .|++|+++++|+++
T Consensus 10 ~~~~~~~~~~~~~tl~~~l~~~a~~~p~d~~Al~~----~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~ 80 (505)
T 3nyq_A 10 HSSGLVPRGSHMSSLFPALSPAPTGAPADRPALRF----GERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAME 80 (505)
T ss_dssp --------------CCTTTSSCCCSGGGGSEEEEE----TTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHH
T ss_pred cccCcccCCcccchhHHHHHHHHHhCCCCCeEEEE----CCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHH
Confidence 3456778888888999999999999997 999995 5789999999999999998764 48899999999999
Q ss_pred HHHHHHHHHHhcCeEEEeecCCCCCCcCC-----------c-------------------------CCCchhhhcccc-e
Q psy9113 90 IVVTMLACARIGAVHSIVVSKCSGDDMST-----------V-------------------------PANSERERKLKL-R 132 (281)
Q Consensus 90 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~-----------~-------------------------~~~~~~~~~~~~-i 132 (281)
++++++||+++|++++|+++.++.+++.+ . ........++++ +
T Consensus 81 ~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 160 (505)
T 3nyq_A 81 TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALV 160 (505)
T ss_dssp HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTCCCCCCCCCCCTTSEEEE
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccccccCCCCCCCCCCCeEEE
Confidence 99999999999999999999999887776 0 000112336778 9
Q ss_pred eeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccc
Q psy9113 133 KVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTA 212 (281)
Q Consensus 133 ~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 212 (281)
+|||||||.||||+++|+++.. ........+++.++|+++..+|++|..|+...++.++..|+++++. + .+++
T Consensus 161 ~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~--~----~~~~ 233 (505)
T 3nyq_A 161 VYTSGTTGPPKGAVIPRRALAT-TLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL--G----RFST 233 (505)
T ss_dssp EEECCSSSSCEEEEEEHHHHHH-HHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC--S----SCCH
T ss_pred EeCCCCcCCCCeEEEeHHHHHH-HHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC--C----CCCh
Confidence 9999999999999999999998 7777777889999999999999999999887899999999999998 5 6788
Q ss_pred cccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhcc
Q psy9113 213 DVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAG 262 (281)
Q Consensus 213 ~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g 262 (281)
+.+++.+ ++++|+++ .+|.++..+++.+..... ...++++++.+.
T Consensus 234 ~~~~~~i-~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~l~~lr~i~ 278 (505)
T 3nyq_A 234 EGAAREL-NDGATMLF---GVPTMYHRIAETLPADPE-LAKALAGARLLV 278 (505)
T ss_dssp HHHHHHH-TTTCCEEE---ECHHHHHHHHHHGGGCHH-HHHHHHHCSEEE
T ss_pred HHHHHHH-hhCCeEEE---ehHHHHHHHHHhhhcCch-hhcccccceEEE
Confidence 9999999 78999977 566667777776543321 223455555433
No 29
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.98 E-value=1.6e-32 Score=255.86 Aligned_cols=234 Identities=22% Similarity=0.258 Sum_probs=182.9
Q ss_pred chhhhhccCCCC-----CCCCCccccCCCC-CCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 24 TGGHVLTPLPGC-----TPMKPGAAGNDPD-DYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 24 tl~~~l~~~a~~-----~pd~~a~~~~~~~-~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
++.+++++.++. +||++|+++.+.+ .++++||+||.++++++|+.|++. |+++||+|+++++|+++++++++|
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 567889888887 9999999874322 358999999999999999999998 999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC--------------------------cCC-------C---------------------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST--------------------------VPA-------N--------------------- 122 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~--------------------------~~~-------~--------------------- 122 (281)
|+++|++++|+++.++.+++.+ .+. .
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTH 198 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHSCSCC
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhcccccc
Confidence 9999999999999988776655 000 0
Q ss_pred --chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEE
Q psy9113 123 --SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSV 199 (281)
Q Consensus 123 --~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v 199 (281)
.....++++ |+|||||||.||||+++|+.+........ ..+++.++|+++...|++|.+|+...++.++..|++++
T Consensus 199 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~ 277 (570)
T 3c5e_A 199 HCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTF 277 (570)
T ss_dssp CCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEE
T ss_pred cccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEE
Confidence 011235677 99999999999999999994432122222 56788899999999999999998768899999999999
Q ss_pred EecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 200 IVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
+. +. ..+++..+++.++++++|.++ .+|.++..+++.. .... ...+|+.+..+|+....
T Consensus 278 ~~--~~--~~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~-~~~~-~~~~lr~i~~gGe~l~~ 336 (570)
T 3c5e_A 278 VH--LL--PKFDPLVILKTLSSYPIKSMM---GAPIVYRMLLQQD-LSSY-KFPHLQNCVTVGESLLP 336 (570)
T ss_dssp EE--CC--SSCCHHHHHHHHHHSCCCEEE---ECHHHHHHHHTSC-TTTC-CCTTCCEEEEESSCCCH
T ss_pred Ee--cC--CCCCHHHHHHHHHHhCCeEEe---ccHHHHHHHHhcc-cccc-ccccceEEEEcCCcCCH
Confidence 98 42 157899999999999999977 5666666666541 1110 22344555556665543
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.97 E-value=2.1e-32 Score=254.70 Aligned_cols=236 Identities=16% Similarity=0.070 Sum_probs=175.9
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCCC------CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDP------DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVL 88 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~------~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~ 88 (281)
+...+++.+|+.++|++.|+++||++|+++.+. ...+++||+||.++++++|+.|.+.|+ +||+|+++++|++
T Consensus 12 ~~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~ 90 (562)
T 3ite_A 12 VSAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSL 90 (562)
T ss_dssp ------CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCH
T ss_pred cceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCH
Confidence 566789999999999999999999999986421 124789999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHHHhcCeEEEeecCCCCCCcCC-------------------c--C------------------------CCc
Q psy9113 89 EIVVTMLACARIGAVHSIVVSKCSGDDMST-------------------V--P------------------------ANS 123 (281)
Q Consensus 89 ~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~-------------------~--~------------------------~~~ 123 (281)
+++++++||+++|++++|+++.++.+++.+ . + ...
T Consensus 91 ~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (562)
T 3ite_A 91 IAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILN 170 (562)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhccccccccccc
Confidence 999999999999999999999999888777 0 0 000
Q ss_pred hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh--------hccCCCCCEEEEeCchhhhhhHhHHHHhhhcc
Q psy9113 124 ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY--------VFDYKPGDIYWCTADVGWITGHTYVVYGPLAN 194 (281)
Q Consensus 124 ~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~ 194 (281)
....++++ |+|||||||.||||+++|+++.. ....... ...+...+++++..|++|..++ ..++.++..
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 248 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSS-FSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-GEMFLAWRF 248 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHH-HHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-HHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHH-HHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-HHHHHHHhc
Confidence 11224567 99999999999999999999987 4443322 2457778999999999998876 478899999
Q ss_pred CceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 195 GATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 195 G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
|+++++. + ....++.+++.++++++|++. .+|.++.. +..... ...+|+.+..+|++-.
T Consensus 249 g~~~~~~--~---~~~~~~~~~~~i~~~~~t~~~---~~P~~l~~----~~~~~~-~~~~lr~~~~gG~~l~ 307 (562)
T 3ite_A 249 GLCAVTG--E---RLSMLDDLPRTFRELGVTHAG---IVPSLLDQ----TGLVPE-DAPHLVYLGVGGEKMT 307 (562)
T ss_dssp TCEEEEC--C---HHHHHHSHHHHHHHTTCCEEE---ECHHHHHH----HTCCGG-GSTTCCEEEEESSCCC
T ss_pred ccEEEec--c---hhhCHHHHHHHHHHcCCCEEE---cCHHHHhh----cccCcc-ccCceEEEEEecCCCC
Confidence 9999988 4 133467888999999999976 44444433 222111 2334454555555443
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.97 E-value=3.8e-32 Score=274.23 Aligned_cols=229 Identities=20% Similarity=0.206 Sum_probs=190.3
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++.+++++.++++||++|+++ .++.+||+||.++++++|+.|++.|+++|++|+++++|+++++++++||+++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~----~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG 538 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTY----SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG 538 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEES----SSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCeEEEE----CCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999995 56899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------------cCC--------------------Cchhhhcccc-eeeeecC
Q psy9113 102 AVHSIVVSKCSGDDMST----------------------VPA--------------------NSERERKLKL-RKVVTGS 138 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------------~~~--------------------~~~~~~~~~~-i~~TSGT 138 (281)
+++||++|.++.+++.+ .+. .....+++++ ++|||||
T Consensus 539 ~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayiiyTSGS 618 (1304)
T 2vsq_A 539 AAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGT 618 (1304)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGGGGSCSSCCCCCCCTTSEEEEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccccccccCCCCCCCCCCCeEEEEeCCCC
Confidence 99999999998877665 000 0011235778 9999999
Q ss_pred CCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccccccee
Q psy9113 139 TGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWIT 218 (281)
Q Consensus 139 TG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~ 218 (281)
||+||||+++|+++.+ . ......+++.++++++...|++|..+. ..++.+|..|+++++. +.. ...++..+++.
T Consensus 619 TG~PKgV~~~h~~l~~-~-~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~--~~~-~~~~~~~l~~~ 692 (1304)
T 2vsq_A 619 TGKPKGNITTHANIQG-L-VKHVDYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIA--DEH-TLLDTERLTDL 692 (1304)
T ss_dssp SSSCEEEEEEHHHHHH-H-HSSCCSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC--CGG-GTTCHHHHHHH
T ss_pred CCCCCEEEEehHHHHH-H-HHHHHhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEEC--Chh-hcCCHHHHHHH
Confidence 9999999999999987 4 445566788899999999999998875 6889999999999998 422 25789999999
Q ss_pred eeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 219 GHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 219 i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
++++++|+++ .+|.++..+.+.... ...+|+.+.++|+....
T Consensus 693 i~~~~vt~~~---~~p~~~~~l~~~~~~----~~~~lr~~~~gGe~l~~ 734 (1304)
T 2vsq_A 693 ILQENVNVMF---ATTALFNLLTDAGED----WMKGLRCILFGGERASV 734 (1304)
T ss_dssp HHHHTCCEEE---EEHHHHHHHHHHCSH----HHHTCSEEEEESSCCCH
T ss_pred HHHcCCcEEE---ccHHHHHHHHhhchh----cCCCccEEEEecCCCCH
Confidence 9999999987 677777766554211 23456667777776553
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.75 E-value=1.7e-18 Score=152.20 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=98.2
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
.++++ |+|||||||.||||++||+++.+ ........++++++|++++.+|++|++|+. .++.++..|+++++. +.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~--~~ 111 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAA-SAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVT--EP 111 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEE--CC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHH-HHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEec--Cc
Confidence 46888 99999999999999999999998 777788889999999999999999999985 678899999999998 41
Q ss_pred ccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 206 EIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
....++.++++++|++. .+|.++..+++...... ...+|+.+..+|++-..
T Consensus 112 ------~~~~~~~i~~~~~t~~~---~~P~~l~~ll~~~~~~~--~l~~lr~v~~gG~~l~~ 162 (358)
T 4gs5_A 112 ------TANPLAGLDHADFDFVA---MVPMQLQSILENSATSG--QVDRLGKVLLGGAPVNH 162 (358)
T ss_dssp ------CSCTTTTCSSCCCSEEE---ECHHHHHHHHHCTTTGG--GGGGGCSEEECSSCCCH
T ss_pred ------cccHHHHHHHhCCeEEE---cChHHHHHhhccccccc--cCCcceEEEEcccCCCc
Confidence 23457789999999977 56667777776554322 22334444455554433
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.57 E-value=1.5e-15 Score=136.74 Aligned_cols=130 Identities=14% Similarity=0.107 Sum_probs=100.4
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhh---hhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTH---KYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
++++ ++|||||||.||+|+++|+++.. ..... ....++.++|+++...|+.|..+....++.++..|+++++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-- 162 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDS-WANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPA-- 162 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHH-HHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECC--
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHH-HHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeC--
Confidence 6778 99999999999999999999977 43333 23457889999999999987777666788999999999988
Q ss_pred CCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccccc-ccccchhhhhccCCCcc
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFC-ILYTISSLMWAGSLDIR 267 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~L~sl~~~g~~g~~ 267 (281)
+ ..+++.+++.++++++|+++ .+|.++..+++........ ...+|+.+..+|++...
T Consensus 163 ~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~ 220 (436)
T 3qov_A 163 A----AGNSKRQIKFISDFKTTALH---AIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTD 220 (436)
T ss_dssp C----SCCHHHHHHHHHHHTCCEEE---CCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCH
T ss_pred C----CCCHHHHHHHHHHHCCCEEE---ECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCH
Confidence 5 56889999999999999977 5566677777776543321 13456666666766543
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.52 E-value=8.2e-15 Score=131.91 Aligned_cols=131 Identities=12% Similarity=-0.009 Sum_probs=98.9
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhh---hhccCCCCCEEEEeCch-hhhhhHhHHHHhhhccCceEEE
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHK---YVFDYKPGDIYWCTADV-GWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl-~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
+.++++ ++|||||||.||+|+++|+++.. ...... ..+++.++|+++..+|+ +|..++ ..++.++..|+++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDT-WANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHH-HHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHH-HHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEEe
Confidence 347788 99999999999999999999877 333222 34678899999999998 677765 467899999999998
Q ss_pred ecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccccc-ccccchhhhhccCCCcc
Q psy9113 201 VSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFC-ILYTISSLMWAGSLDIR 267 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~L~sl~~~g~~g~~ 267 (281)
. + .++++.+++.++++++|+++ .+|.++..+++........ ...+|+.+..+|++...
T Consensus 166 ~--~----~~~~~~~~~~i~~~~~t~l~---~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~ 224 (437)
T 2y27_A 166 F--G----GGQTEKQVQLIQDFRPDIIM---VTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTN 224 (437)
T ss_dssp C--C----SCCHHHHHHHHHHHCCSEEE---ECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCH
T ss_pred C--C----CCCHHHHHHHHHHhCCCEEE---ECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCH
Confidence 7 4 46899999999999999977 5666677777765432211 12456666677766553
No 35
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.52 E-value=3.2e-15 Score=131.66 Aligned_cols=128 Identities=13% Similarity=-0.047 Sum_probs=89.3
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHh---hhhhccCCCCCEEEEeCch-hhhhhHhHHHHhhhccCceEEE
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATT---HKYVFDYKPGDIYWCTADV-GWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~l~~~pl-~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
+.++++ ++|||||||.||+|+++|+++.. .... .....++.++|+++...|+ +|..|+. ..+.++..|+ +++
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEA-LISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MFF 165 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHH-HHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CEE
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHH-HHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EEE
Confidence 456778 99999999999999999999988 4442 3345678889999999999 9999975 4566688999 444
Q ss_pred ecCCCcccccccc-----------------------ccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchh
Q psy9113 201 VSLPGEIYWCTAD-----------------------VGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISS 257 (281)
Q Consensus 201 ~~~~~~~~~~~~~-----------------------~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~s 257 (281)
. . .++|. .+++.++++++|+++ .+|.++..+++....... ...+|+.
T Consensus 166 ~--~----~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~---~~Ps~~~~l~~~~~~~~~-~~~~lr~ 235 (369)
T 3hgu_A 166 S--I----DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLV---TTPPVLRELLKRPEVVLQ-MKQSLAQ 235 (369)
T ss_dssp C--C----CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEE---ECHHHHHHHTTCHHHHHH-HHHHCSE
T ss_pred C--c----cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEE---eCHHHHHHHHhhhhhhcc-ccCCeeE
Confidence 4 2 45666 778899999999977 556666666655332111 2234455
Q ss_pred hhhccCCCc
Q psy9113 258 LMWAGSLDI 266 (281)
Q Consensus 258 l~~~g~~g~ 266 (281)
+..+|+.-.
T Consensus 236 i~~gGe~l~ 244 (369)
T 3hgu_A 236 ITLGGTELN 244 (369)
T ss_dssp EEEESSCCC
T ss_pred EEECCccCC
Confidence 555665543
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.51 E-value=1.2e-14 Score=131.15 Aligned_cols=131 Identities=15% Similarity=0.037 Sum_probs=98.6
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhh---hhccCCCCCEEEEeCch-hhhhhHhHHHHhhhccCceEEE
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHK---YVFDYKPGDIYWCTADV-GWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl-~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
+.++++ ++|||||||.||+|+++|+++.. ...... ..+++.++|+++...|+ .|..++ ..++.++..|+++++
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDT-WANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHH-HHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEEC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHH-HHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEE
Confidence 347788 99999999999999999999877 333222 25778899999999999 466665 467889999999998
Q ss_pred ecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccccc-ccccchhhhhccCCCcc
Q psy9113 201 VSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFC-ILYTISSLMWAGSLDIR 267 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~L~sl~~~g~~g~~ 267 (281)
. + .++++.+++.++++++|+++ .+|.++..+++........ ...+|+.+..+|+....
T Consensus 168 ~--~----~~~~~~~~~~i~~~~~t~l~---~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~ 226 (443)
T 2y4o_A 168 M--S----GGQTEKQVQLIRDFEPKIIL---VTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQ 226 (443)
T ss_dssp C--C----SCCHHHHHHHHHHHCCSEEE---ECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCH
T ss_pred C--C----CCCHHHHHHHHHHhCCcEEE---ECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCH
Confidence 8 4 46899999999999999976 5566667777765432211 12456666677776553
No 37
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=64.11 E-value=23 Score=30.74 Aligned_cols=73 Identities=11% Similarity=-0.055 Sum_probs=54.8
Q ss_pred CCCcc-ccCCCCCC----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCC--cHHHHHHHHHHHHhcCeEEEeecC
Q psy9113 38 MKPGA-AGNDPDDY----SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPM--VLEIVVTMLACARIGAVHSIVVSK 110 (281)
Q Consensus 38 d~~a~-~~~~~~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n--~~~~~~~~lA~~~~G~~~v~l~~~ 110 (281)
+.++. .+..+.++ -.+|.+.+...+..++..+...|+.++|++....+- ....+..+++++..|+..++.++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 55554 34444433 468999999988888888888899999999988874 345555678889999998877554
No 38
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=63.76 E-value=21 Score=30.94 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCCCCcc-ccCCCCCC----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCC--cHHHHHHHHHHHHhcCeEEEee
Q psy9113 36 TPMKPGA-AGNDPDDY----SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPM--VLEIVVTMLACARIGAVHSIVV 108 (281)
Q Consensus 36 ~pd~~a~-~~~~~~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n--~~~~~~~~lA~~~~G~~~v~l~ 108 (281)
.++.++. .+..+.++ ..+|.+.+...+..++..+...|+.++|++....+- +.......++++..|+..++.+
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 4566664 34444433 468999999888888877777899999999988875 3444556788899999988765
Q ss_pred c
Q psy9113 109 S 109 (281)
Q Consensus 109 ~ 109 (281)
.
T Consensus 168 ~ 168 (437)
T 2y27_A 168 G 168 (437)
T ss_dssp S
T ss_pred C
Confidence 4
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=63.12 E-value=2.5 Score=39.01 Aligned_cols=27 Identities=11% Similarity=-0.057 Sum_probs=22.6
Q ss_pred cccc-eeeeecCC-CCCceEEEechhHHH
Q psy9113 128 KLKL-RKVVTGST-GKPKGVLHTTGGYLL 154 (281)
Q Consensus 128 ~~~~-i~~TSGTT-G~PK~v~~s~~~l~~ 154 (281)
+.+. +.-||||| |+||.+.+|.+.+..
T Consensus 99 ~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 99 HPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred CCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 3445 88999999 889999999987765
No 40
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=60.99 E-value=25 Score=30.50 Aligned_cols=75 Identities=9% Similarity=0.009 Sum_probs=54.9
Q ss_pred CCCCCcc-ccCCCCCC----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCC--cHHHHHHHHHHHHhcCeEEEee
Q psy9113 36 TPMKPGA-AGNDPDDY----SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPM--VLEIVVTMLACARIGAVHSIVV 108 (281)
Q Consensus 36 ~pd~~a~-~~~~~~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n--~~~~~~~~lA~~~~G~~~v~l~ 108 (281)
.++.++. .+..+.++ ..+|.+.+...+..++..+...|+.++|++....+- ....+...++++..|+..++.+
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 4566664 34444443 368999999888888887778899999999988875 3444556788889999988765
Q ss_pred cC
Q psy9113 109 SK 110 (281)
Q Consensus 109 ~~ 110 (281)
..
T Consensus 170 ~~ 171 (443)
T 2y4o_A 170 GG 171 (443)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=54.44 E-value=5.5 Score=36.59 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=21.6
Q ss_pred ccc-eeeeecCC-CCCceEEEechhHHH
Q psy9113 129 LKL-RKVVTGST-GKPKGVLHTTGGYLL 154 (281)
Q Consensus 129 ~~~-i~~TSGTT-G~PK~v~~s~~~l~~ 154 (281)
.+. ..-||||| |++|.+..|.+.+..
T Consensus 99 pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 99 PVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp CCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CcceEEecCCCCCCCccccccCHHHHHH
Confidence 344 88999999 889999999887655
No 42
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=50.78 E-value=6.8 Score=36.00 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=20.4
Q ss_pred eeeeecCC-CCCceEEEechhHHH
Q psy9113 132 RKVVTGST-GKPKGVLHTTGGYLL 154 (281)
Q Consensus 132 i~~TSGTT-G~PK~v~~s~~~l~~ 154 (281)
..-||||| |++|.+..|.+.+..
T Consensus 98 F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 98 FLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp EEEEEEEETTEEEEEEECHHHHHH
T ss_pred EEeCCCCCCCCccccccCHHHHHH
Confidence 88999999 789999999987655
No 43
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=38.88 E-value=90 Score=25.86 Aligned_cols=59 Identities=22% Similarity=0.140 Sum_probs=38.7
Q ss_pred eeeeHHHHHHHHHHH---HHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeec
Q psy9113 51 SRLTYKKLLEEVCKC---ANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS 109 (281)
Q Consensus 51 ~~~Ty~~l~~~~~~l---a~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~ 109 (281)
..+++.+........ -+.+...++++|++|++....+.-..++.++....|+.++.++.
T Consensus 135 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~ 196 (348)
T 4eez_A 135 DGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI 196 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES
T ss_pred CCCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC
Confidence 345666543332222 22345568999999999988777777777777777777766654
No 44
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=38.64 E-value=73 Score=20.10 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=33.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 51 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
..+.+.++.+. +.+.+..+++.|.++|.++.....+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 56667776543 33446678889999999988877777778888874
No 45
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=36.08 E-value=29 Score=28.38 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=19.4
Q ss_pred HHHHHHHHHCCCCCCCEEEEEeCC
Q psy9113 63 CKCANVLKSKGVQKGDRVAIYLPM 86 (281)
Q Consensus 63 ~~la~~L~~~g~~~g~~V~l~~~n 86 (281)
..+.+.|+++|+++||.|.+...=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 356677888899999999998754
No 46
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=33.68 E-value=33 Score=28.11 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.5
Q ss_pred HHHHHHHCCCCCCCEEEEEeC
Q psy9113 65 CANVLKSKGVQKGDRVAIYLP 85 (281)
Q Consensus 65 la~~L~~~g~~~g~~V~l~~~ 85 (281)
+.+.|+++|+++||.|.+...
T Consensus 18 L~~~L~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 18 ITEDLKALGLKKGMTVLVHSS 38 (273)
T ss_dssp HHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHcCCCCCCEEEEEec
Confidence 556777889999999999874
No 47
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=33.57 E-value=33 Score=28.28 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=32.6
Q ss_pred CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCC--------cHHHH-HHHHHHHH-hcCeEEEe
Q psy9113 47 PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPM--------VLEIV-VTMLACAR-IGAVHSIV 107 (281)
Q Consensus 47 ~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n--------~~~~~-~~~lA~~~-~G~~~v~l 107 (281)
.++.+.+|-.+|. +.|+++|+++||.|.+...= +++.+ -+++...- -|-+++|.
T Consensus 16 ~~~~~~~T~~~L~-------~~L~~LGI~~Gd~llVHsSL~~lG~v~Gga~~vi~AL~~~vg~~GTLvmPt 79 (286)
T 3sma_A 16 RQDRELVTRDRLA-------SDLAALGVRPGGVLLVHASLSALGWVCGGAQAVVLALQDAVGKEGTLVMPT 79 (286)
T ss_dssp ---CCEECHHHHH-------HHHHHHTCCTTCEEEEEECSTTSCEETTHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred cccCCCcCHHHHH-------HHHHHcCCCCCCEEEEEechHHhCCCCCCHHHHHHHHHHHhcCCCEEEEec
Confidence 3566778877665 46667799999999998743 23332 23333332 46667765
No 48
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=33.02 E-value=1.1e+02 Score=21.32 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEee
Q psy9113 66 ANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVV 108 (281)
Q Consensus 66 a~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~ 108 (281)
+.+|.+.|+.++..+.+-..+..+.+.++-=+++.|...+.+-
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~ 89 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 89 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEE
Confidence 5677888998888888888888899999999999998766553
No 49
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=32.75 E-value=1.9e+02 Score=24.13 Aligned_cols=72 Identities=7% Similarity=0.004 Sum_probs=47.6
Q ss_pred CCCCcc-ccCCCCCC----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcH-HHHHHHHHHHHhcCeEEEeecC
Q psy9113 37 PMKPGA-AGNDPDDY----SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVL-EIVVTMLACARIGAVHSIVVSK 110 (281)
Q Consensus 37 pd~~a~-~~~~~~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~-~~~~~~lA~~~~G~~~v~l~~~ 110 (281)
+|.+|+ ++..+.++ ..+|.+.+...+...+.. .++.++|++...+|-.. ..+..++..+..|+..+..++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 355664 35554443 469999998877666543 47889999998887543 3344456667778877766654
Q ss_pred C
Q psy9113 111 C 111 (281)
Q Consensus 111 ~ 111 (281)
.
T Consensus 113 ~ 113 (358)
T 4gs5_A 113 A 113 (358)
T ss_dssp S
T ss_pred c
Confidence 3
No 50
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=30.44 E-value=70 Score=29.58 Aligned_cols=91 Identities=11% Similarity=-0.105 Sum_probs=62.6
Q ss_pred cccceeeeecCCCCCceEEEechhHHHHHHHhhh---h-hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 128 KLKLRKVVTGSTGKPKGVLHTTGGYLLYAATTHK---Y-VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 128 ~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~---~-~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
+.+++.+-+..+| ....+|++.+.. .....+ . ..++.++|++...+|-.--+ ...+++++..|+..+.+
T Consensus 97 d~~Al~~~~~~~~--~~~~~TY~eL~~-~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vpl-- 169 (663)
T 1ry2_A 97 NKKAIIFEGDEPG--QGYSITYKELLE-EVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSVV-- 169 (663)
T ss_dssp TSEEEEEECSSTT--CCEEEEHHHHHH-HHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEEC--
T ss_pred CceEEEEEcCCCC--ceEEEEHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEee--
Confidence 3444555433222 235688887776 333222 2 45788999999999987654 46789999999998888
Q ss_pred CCccccccccccceeeeeeccceec
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPL 228 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~ 228 (281)
+. .+.++.+...+++.++.+++
T Consensus 170 ~~---~~~~~~l~~~l~~~~~~~li 191 (663)
T 1ry2_A 170 FA---GFSSNSLRDRINDGDSKVVI 191 (663)
T ss_dssp CT---TSCHHHHHHHHHHHTCSEEE
T ss_pred CC---CCCHHHHHHHHHhcCCeEEE
Confidence 42 56777888888888888765
No 51
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=30.13 E-value=1.1e+02 Score=27.22 Aligned_cols=89 Identities=8% Similarity=-0.102 Sum_probs=62.9
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh---hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY---VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
+.++ +.+..+.++ ..+|++.+.. .....+. ..++.++|++...+|-+..+ ...+++++..|+..+.+
T Consensus 35 ~~~a~~a~~~~~~~----~~~Ty~el~~-~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl-- 105 (550)
T 3rix_A 35 LVPGTIAFTDAHIE----VNITYAEYFE-MSVRLAEAMKRYGLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPA-- 105 (550)
T ss_dssp TSTTCEEEEETTTC----CEEEHHHHHH-HHHHHHHHHHHHTCCTTCEEEEECSSCTTT--HHHHHHHHHHTCEEEEC--
T ss_pred CCceEEEeeecCCC----cEeEHHHHHH-HHHHHHHHHHHhCCCCCCEEEEEcCCcccH--HHHHHHHHHcCCEEeec--
Confidence 5566 545555444 3688888776 4433333 35889999998888876543 46789999999999888
Q ss_pred CCccccccccccceeeeeeccceec
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPL 228 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~ 228 (281)
+. ...++.+...++..++..++
T Consensus 106 ~~---~~~~~~l~~~l~~~~~~~vi 127 (550)
T 3rix_A 106 ND---IYNERELLNSMNISQPTVVF 127 (550)
T ss_dssp CT---TCCHHHHHHHHHHHCCSEEE
T ss_pred CC---cCCHHHHHHHHHhcCCeEEE
Confidence 42 56677888888888888876
No 52
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=28.09 E-value=65 Score=26.99 Aligned_cols=72 Identities=4% Similarity=-0.082 Sum_probs=46.7
Q ss_pred CCCCCccc-cCCCCCC----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCC--cHHHHHHHHHHHHhcCeEEEe
Q psy9113 36 TPMKPGAA-GNDPDDY----SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPM--VLEIVVTMLACARIGAVHSIV 107 (281)
Q Consensus 36 ~pd~~a~~-~~~~~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n--~~~~~~~~lA~~~~G~~~v~l 107 (281)
.++.++.+ +..+.++ ..+|.+.+...+...+..+...|+.++|++..+.+- +.--....+++...|+.+++.
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 34555544 3343332 457888888888877666777789999999998876 333344455558889855543
No 53
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=27.79 E-value=1.1e+02 Score=27.35 Aligned_cols=76 Identities=7% Similarity=-0.216 Sum_probs=55.9
Q ss_pred EEEechhHHHHHHHhhh---hhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 145 VLHTTGGYLLYAATTHK---YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 145 v~~s~~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
-.+|+..+.. .....+ ...++.++|++...+|-+..+ ...+++++..|+..+.+ +. ....+.+...+++
T Consensus 51 ~~~Ty~el~~-~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl--~~---~~~~~~l~~il~~ 122 (549)
T 3g7s_A 51 ESMNFLEICE-VTKKLASGISRKGVRKGEHVGVCIPNSIDY--VMTIYALWRVAATPVPI--NP---MYKSFELEHILND 122 (549)
T ss_dssp SEEEHHHHHH-HHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEC--CT---TCCHHHHHHHHHH
T ss_pred ceeeHHHHHH-HHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEEcc--CC---CCCHHHHHHHHHh
Confidence 4578877766 333332 235788999999988877554 46789999999999988 42 4567778888888
Q ss_pred eccceec
Q psy9113 222 YVVYGPL 228 (281)
Q Consensus 222 ~~vt~~~ 228 (281)
.++..++
T Consensus 123 ~~~~~~i 129 (549)
T 3g7s_A 123 SEATTLV 129 (549)
T ss_dssp TTCSEEE
T ss_pred cCCCEEE
Confidence 8888866
No 54
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=27.40 E-value=1.8e+02 Score=21.70 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEeCCc--HHHHHHHHHHHHhcCeEEEeec
Q psy9113 73 GVQKGDRVAIYLPMV--LEIVVTMLACARIGAVHSIVVS 109 (281)
Q Consensus 73 g~~~g~~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l~~ 109 (281)
.+.++|+|.++++++ ..-+-....+...|+.++.+..
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 689999999999886 4566777778889999999977
No 55
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=27.40 E-value=1.1e+02 Score=26.48 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=43.2
Q ss_pred eeeeHHHHHH-------HHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe-EEEee
Q psy9113 51 SRLTYKKLLE-------EVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-HSIVV 108 (281)
Q Consensus 51 ~~~Ty~~l~~-------~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~-~v~l~ 108 (281)
..+.+.++.+ ....+...+.+.|+.+++.|.++|.++.....+.+++..+|.. +..++
T Consensus 170 ~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~ 235 (423)
T 2wlr_A 170 DYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLD 235 (423)
T ss_dssp EEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEET
T ss_pred EEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEEC
Confidence 4566666643 2455666777789989999999999988888888888899984 33343
No 56
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=26.92 E-value=2.1e+02 Score=25.32 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=48.3
Q ss_pred CCCCCccc-cCCCCC----CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHH---HHHHHHHhcCeEEEe
Q psy9113 36 TPMKPGAA-GNDPDD----YSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVV---TMLACARIGAVHSIV 107 (281)
Q Consensus 36 ~pd~~a~~-~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~---~~lA~~~~G~~~v~l 107 (281)
.++.+|++ +..+.+ +..+|.+.+...+...+.. .++.++|++....|-...+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 45666654 444433 3578999998887766544 478899999988876543322 477888899988876
Q ss_pred ec
Q psy9113 108 VS 109 (281)
Q Consensus 108 ~~ 109 (281)
+.
T Consensus 266 ~~ 267 (544)
T 3o83_A 266 PN 267 (544)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 57
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=26.64 E-value=66 Score=23.04 Aligned_cols=49 Identities=8% Similarity=-0.024 Sum_probs=29.7
Q ss_pred HHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe-EEEeecCCC
Q psy9113 64 KCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-HSIVVSKCS 112 (281)
Q Consensus 64 ~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~~ 112 (281)
.+...|.+.|+.+++.|.++|.++.....+...+...|.. +..++..+.
T Consensus 67 ~l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 67 ELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp HHHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred HHHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3444444456778889999999887777777788888984 555655553
No 58
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=26.27 E-value=3.1e+02 Score=24.16 Aligned_cols=71 Identities=11% Similarity=0.005 Sum_probs=48.3
Q ss_pred CCCCCccc-cCCCCC----CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHH--HH-HHHHHHHhcCeEEEe
Q psy9113 36 TPMKPGAA-GNDPDD----YSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEI--VV-TMLACARIGAVHSIV 107 (281)
Q Consensus 36 ~pd~~a~~-~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~--~~-~~lA~~~~G~~~v~l 107 (281)
.|+.+|++ +..+.+ +..+|.+.+...+...... .++.++|++....|-...+ .. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 45666643 444443 3579999988777665543 3788999998888765333 32 478889999998876
Q ss_pred ec
Q psy9113 108 VS 109 (281)
Q Consensus 108 ~~ 109 (281)
+.
T Consensus 257 ~~ 258 (539)
T 1mdb_A 257 PS 258 (539)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 59
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=26.02 E-value=1.1e+02 Score=24.39 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=38.3
Q ss_pred eeeeHHHHHHHH------HHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 51 SRLTYKKLLEEV------CKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 51 ~~~Ty~~l~~~~------~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
..+.+.++.+.. ..+...+.+.|+.+++.|.++|.++.....+...+...|..
T Consensus 191 ~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~ 249 (271)
T 1e0c_A 191 VNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYP 249 (271)
T ss_dssp EECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCS
T ss_pred eeccHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCC
Confidence 345666554321 33445566678889999999999998888888888889974
No 60
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=25.09 E-value=78 Score=29.14 Aligned_cols=91 Identities=8% Similarity=-0.150 Sum_probs=62.2
Q ss_pred cccceeeeecCCCCCceEEEechhHHHHHHHhhhh---hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCC
Q psy9113 128 KLKLRKVVTGSTGKPKGVLHTTGGYLLYAATTHKY---VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204 (281)
Q Consensus 128 ~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~ 204 (281)
+.+++.+-+..+| ....+|++.+.. .....+. ..++.++|++...+|-+-.+ ...+++++..|+..+.+ +
T Consensus 91 d~~Al~~~~~~~~--~~~~lTY~eL~~-~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl--~ 163 (652)
T 1pg4_A 91 DRTAIIWEGDDTS--QSKHISYRELHR-DVCRFANTLLDLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVI--F 163 (652)
T ss_dssp TSEEEEEECSSTT--CEEEEEHHHHHH-HHHHHHHHHHHHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC--C
T ss_pred CceEEEEEcCCCC--ceeEEeHHHHHH-HHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEec--C
Confidence 4445555433222 235688888776 4333332 35889999999999887654 46789999999999888 4
Q ss_pred Cccccccccccceeeeeeccceec
Q psy9113 205 GEIYWCTADVGWITGHTYVVYGPL 228 (281)
Q Consensus 205 ~~~~~~~~~~~~~~i~~~~vt~~~ 228 (281)
. .+.++.+...+++.++..++
T Consensus 164 ~---~~~~~~l~~~l~~~~~~~li 184 (652)
T 1pg4_A 164 G---GFSPEAVAGCIIDSSSRLVI 184 (652)
T ss_dssp T---TSCHHHHHHHHHHHTCSEEE
T ss_pred C---CCCHHHHHHHHHhcCCCEEE
Confidence 2 56677777777777777755
No 61
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=24.79 E-value=1.9e+02 Score=25.75 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=50.9
Q ss_pred CCCCCCccc-cCCCCCC----eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHH--HHHHHHHHhcCeEEEe
Q psy9113 35 CTPMKPGAA-GNDPDDY----SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIV--VTMLACARIGAVHSIV 107 (281)
Q Consensus 35 ~~pd~~a~~-~~~~~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~--~~~lA~~~~G~~~v~l 107 (281)
..|+.++++ +..+.++ ..+|.+.+...+..... ..++.++|++....|-...+- ..+++.+..|+..+..
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 346666654 4444433 57999999888776654 347889999998888764433 3378888999988877
Q ss_pred ec
Q psy9113 108 VS 109 (281)
Q Consensus 108 ~~ 109 (281)
++
T Consensus 241 ~~ 242 (590)
T 3kxw_A 241 SP 242 (590)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 62
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=23.84 E-value=1.2e+02 Score=24.27 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCCCCCCEEEEEeCCcHH-HHHHHHHHHHhcCe-EEEeec
Q psy9113 63 CKCANVLKSKGVQKGDRVAIYLPMVLE-IVVTMLACARIGAV-HSIVVS 109 (281)
Q Consensus 63 ~~la~~L~~~g~~~g~~V~l~~~n~~~-~~~~~lA~~~~G~~-~v~l~~ 109 (281)
..++..+.+.|+.+++.|.+++.++.. ...+.+.+...|.. +..++.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~G 120 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGG 120 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETT
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecC
Confidence 456666777889899999999988654 55566667778873 333433
No 63
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=23.82 E-value=1.2e+02 Score=24.04 Aligned_cols=47 Identities=9% Similarity=-0.092 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCCCCCEEEEEeCCcH-HHHHHHHHHHHhcCe-EEEeec
Q psy9113 63 CKCANVLKSKGVQKGDRVAIYLPMVL-EIVVTMLACARIGAV-HSIVVS 109 (281)
Q Consensus 63 ~~la~~L~~~g~~~g~~V~l~~~n~~-~~~~~~lA~~~~G~~-~v~l~~ 109 (281)
..++..+.+.|+.+++.|.+++.++. ....+...+...|.. +..++.
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~G 115 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNG 115 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETT
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecC
Confidence 45666677778888999999998765 555566667778874 333443
No 64
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=23.75 E-value=98 Score=24.86 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH-HhcCe
Q psy9113 63 CKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA-RIGAV 103 (281)
Q Consensus 63 ~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~-~~G~~ 103 (281)
..+...+.+.|+.+++.|.++|..+.....+...+. ..|..
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~ 260 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYP 260 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCC
Confidence 345556667788899999999999888877777777 78873
No 65
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=23.71 E-value=1.5e+02 Score=26.05 Aligned_cols=76 Identities=14% Similarity=-0.073 Sum_probs=56.2
Q ss_pred EEEechhHHHHHHHhhhh---hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 145 VLHTTGGYLLYAATTHKY---VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 145 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
..+|+..+.. .....+. ..++.++|++...+|-+..+ ...+++++..|+..+.+ +. ....+.+...+++
T Consensus 42 ~~~Ty~eL~~-~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl--~~---~~~~~~l~~~l~~ 113 (517)
T 3r44_A 42 VRMTYAQMNA-LANRCADVLTALGIAKGDRVALLMPNSVEF--CCLFYGAAKLGAVAVPI--NT---RLAAPEVSFILSD 113 (517)
T ss_dssp EEEEHHHHHH-HHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC--CT---TSCHHHHHHHHHH
T ss_pred ceeeHHHHHH-HHHHHHHHHHHcCCCCcCEEEEEcCCCHHH--HHHHHHHHHhCcEEEec--Cc---ccCHHHHHHHHHh
Confidence 4688887776 4433333 35788999999998876544 46789999999999988 42 4567777778888
Q ss_pred eccceec
Q psy9113 222 YVVYGPL 228 (281)
Q Consensus 222 ~~vt~~~ 228 (281)
.++..++
T Consensus 114 ~~~~~vi 120 (517)
T 3r44_A 114 SGSKVVI 120 (517)
T ss_dssp HTCSEEE
T ss_pred cCceEEE
Confidence 8888766
No 66
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=23.60 E-value=1.5e+02 Score=26.33 Aligned_cols=77 Identities=9% Similarity=-0.211 Sum_probs=56.9
Q ss_pred eEEEechhHHHHHHHhhh---hhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeee
Q psy9113 144 GVLHTTGGYLLYAATTHK---YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGH 220 (281)
Q Consensus 144 ~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~ 220 (281)
...+|+..+.. .....+ ...++.++|++...+|-+..+ ...+++++..|+..+.+ +. ...++.+...++
T Consensus 45 ~~~~Ty~el~~-~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl--~~---~~~~~~l~~~l~ 116 (541)
T 1v25_A 45 VHRTTYAEVYQ-RARRLMGGLRALGVGVGDRVATLGFNHFRH--LEAYFAVPGMGAVLHTA--NP---RLSPKEIAYILN 116 (541)
T ss_dssp EEEEEHHHHHH-HHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEC--CT---TSCHHHHHHHHH
T ss_pred CceecHHHHHH-HHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHhcCcEEEec--Cc---ccCHHHHHHHHH
Confidence 35688887776 333332 235788999999888876544 45789999999999988 42 456778888888
Q ss_pred eeccceec
Q psy9113 221 TYVVYGPL 228 (281)
Q Consensus 221 ~~~vt~~~ 228 (281)
+.++..++
T Consensus 117 ~~~~~~vi 124 (541)
T 1v25_A 117 HAEDKVLL 124 (541)
T ss_dssp HHTCSEEE
T ss_pred hCCCcEEE
Confidence 88888876
No 67
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=22.60 E-value=1.1e+02 Score=17.62 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=14.7
Q ss_pred HHHCCCCCCCEEEEEeCCc
Q psy9113 69 LKSKGVQKGDRVAIYLPMV 87 (281)
Q Consensus 69 L~~~g~~~g~~V~l~~~n~ 87 (281)
..++|+++||.|.+...+.
T Consensus 21 r~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 21 RQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHSCCCTTCEEEEEECSS
T ss_pred HHHcCcCCCCEEEEEEECC
Confidence 3457999999999887654
No 68
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=22.35 E-value=2.8e+02 Score=21.57 Aligned_cols=54 Identities=9% Similarity=-0.078 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCCCCC
Q psy9113 57 KLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDD 115 (281)
Q Consensus 57 ~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 115 (281)
..++.+.++++.|.+.| ...+.+.-.=-.-++.-|++.+|...+.+.+.++.++
T Consensus 53 ~~~~~A~~lg~~La~~g-----~~lVsGGg~GiM~aa~~gAl~~gG~~iGV~~~~P~~~ 106 (217)
T 1wek_A 53 PAYEAGYRLGRALAEAG-----FGVVTGGGPGVMEAVNRGAYEAGGVSVGLNIELPHEQ 106 (217)
T ss_dssp HHHHHHHHHHHHHHHHT-----CEEEECSCSHHHHHHHHHHHHTTCCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHHHCC-----CEEEeCChhhHHHHHHHHHHHcCCCEEEEeeCCcchh
Confidence 34788899999998876 3344444443445567788889998888877665443
No 69
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=22.15 E-value=94 Score=27.33 Aligned_cols=76 Identities=16% Similarity=-0.135 Sum_probs=57.1
Q ss_pred EEEechhHHHHHHHhhhh---hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 145 VLHTTGGYLLYAATTHKY---VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 145 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
..+|++.+.. .....+. ..++.++|++...+|-+..+ ...+++++..|+..+.+ +. ...++.+...+++
T Consensus 30 ~~~Ty~eL~~-~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl--~~---~~~~~~l~~~l~~ 101 (509)
T 3ivr_A 30 VRLTHRDYLA-RAERLASGLLRDGVHTGDRVAILSQNCSEM--IELIGAVALIGAILLPV--NY---RLNADEIAFVLGD 101 (509)
T ss_dssp EEEEHHHHHH-HHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEEC--CT---TSCHHHHHHHHHH
T ss_pred cEEcHHHHHH-HHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCCEEEec--CC---CCCHHHHHHHHHh
Confidence 4688888777 4433333 35788999999888876544 46789999999999988 42 5677788888888
Q ss_pred eccceec
Q psy9113 222 YVVYGPL 228 (281)
Q Consensus 222 ~~vt~~~ 228 (281)
.++..++
T Consensus 102 ~~~~~vi 108 (509)
T 3ivr_A 102 GAPSVVV 108 (509)
T ss_dssp HCEEEEE
T ss_pred cCceEEE
Confidence 8888876
No 70
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=22.05 E-value=1e+02 Score=27.19 Aligned_cols=76 Identities=7% Similarity=-0.166 Sum_probs=55.4
Q ss_pred EEechhHHHHHHHhhhh---hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeee
Q psy9113 146 LHTTGGYLLYAATTHKY---VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTY 222 (281)
Q Consensus 146 ~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~ 222 (281)
.+|++.+.. .....+. ..++.++|++...+|-+..+ ...+++++..|+..+.+ +. ....+.+...+++.
T Consensus 28 ~~Ty~eL~~-~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl--~~---~~~~~~l~~il~~~ 99 (503)
T 4fuq_A 28 KISYAELVA-RAGRVANVLVARGLQVGDRVAAQTEKSVEA--LVLYLATVRAGGVYLPL--NT---AYTLHELDYFITDA 99 (503)
T ss_dssp EEEHHHHHH-HHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEEC--CT---TCCHHHHHHHHHHH
T ss_pred EEEHHHHHH-HHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHcCcEEEec--CC---CCCHHHHHHHHHhc
Confidence 578887776 3333332 35788999999988877544 46789999999999888 42 45677777778888
Q ss_pred ccceecc
Q psy9113 223 VVYGPLA 229 (281)
Q Consensus 223 ~vt~~~~ 229 (281)
++..++.
T Consensus 100 ~~~~vi~ 106 (503)
T 4fuq_A 100 EPKIVVC 106 (503)
T ss_dssp CCSEEEE
T ss_pred CCcEEEE
Confidence 8887663
No 71
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=22.01 E-value=99 Score=27.17 Aligned_cols=76 Identities=7% Similarity=-0.147 Sum_probs=55.8
Q ss_pred EEEechhHHHHHHHhhhh---hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 145 VLHTTGGYLLYAATTHKY---VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 145 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
..+|++.+.. .....+. ..++.++|++...+|-+..+ ...+++++..|+..+.+ +. ...++.+...+++
T Consensus 28 ~~~Ty~el~~-~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl--~~---~~~~~~l~~~l~~ 99 (504)
T 1t5h_X 28 LRLTHAELRA-RVEAVAARLHADGLRPQQRVAVVAPNSADV--VIAILALHRLGAVPALL--NP---RLKSAELAELIKR 99 (504)
T ss_dssp EEEEHHHHHH-HHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEE--CT---TSCHHHHHHHHHH
T ss_pred ceeEHHHHHH-HHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCcEEEec--CC---ccChHHHHHHHhh
Confidence 5688887776 4333332 35788999998888876544 46789999999999988 42 4567777778888
Q ss_pred eccceec
Q psy9113 222 YVVYGPL 228 (281)
Q Consensus 222 ~~vt~~~ 228 (281)
.++..++
T Consensus 100 ~~~~~~i 106 (504)
T 1t5h_X 100 GEMTAAV 106 (504)
T ss_dssp TTCSEEE
T ss_pred cCCcEEE
Confidence 8888765
No 72
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=22.01 E-value=1.2e+02 Score=25.45 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEeCCcH-HHHHHHHHHHHhcCeEEEe
Q psy9113 61 EVCKCANVLKSKGVQKGDRVAIYLPMVL-EIVVTMLACARIGAVHSIV 107 (281)
Q Consensus 61 ~~~~la~~L~~~g~~~g~~V~l~~~n~~-~~~~~~lA~~~~G~~~v~l 107 (281)
....++..|.++|+.++++|.++-.+.. ...-+.+-+...|.--|-|
T Consensus 97 ~~~~f~~~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~v 144 (327)
T 3utn_X 97 TKKVFDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYL 144 (327)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceee
Confidence 3567888889999999999999976653 2333445566677654433
No 73
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=22.00 E-value=2e+02 Score=23.96 Aligned_cols=41 Identities=20% Similarity=0.024 Sum_probs=29.8
Q ss_pred HHHH--CCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEee
Q psy9113 68 VLKS--KGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVV 108 (281)
Q Consensus 68 ~L~~--~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~ 108 (281)
.|.+ .++++|++|++......-..+..+|-...|+.++.+.
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~ 218 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALD 218 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 3455 6899999999999966777777776654387666554
No 74
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=21.96 E-value=88 Score=27.42 Aligned_cols=75 Identities=7% Similarity=-0.189 Sum_probs=52.1
Q ss_pred EEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccc
Q psy9113 146 LHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVY 225 (281)
Q Consensus 146 ~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt 225 (281)
.+|+..+.. .....+..+.-.++|++...+|-+..+ ...+++++..|+..+.+ +. ...++.+...+++.++.
T Consensus 26 ~~Ty~eL~~-~~~~lA~~L~~~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl--~~---~~~~~~l~~~l~~~~~~ 97 (501)
T 3ipl_A 26 SYTYQNLYC-EASLLAKRLKAYQQSRVGLYIDNSIQS--IILIHACWLANIEIAMI--NT---RLTPNEMTNQMRSIDVQ 97 (501)
T ss_dssp EEEHHHHHH-HHHHHHHHHHTTCCSEEEEECCSSHHH--HHHHHHHHHTTCEEEEC--CT---TSCHHHHHHHHHHTTCC
T ss_pred EEEHHHHHH-HHHHHHHHHHHcCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEec--Cc---cCCHHHHHHHHHhcCCC
Confidence 688888877 454444443333789998888876544 46789999999999988 42 45566666666666666
Q ss_pred eec
Q psy9113 226 GPL 228 (281)
Q Consensus 226 ~~~ 228 (281)
.++
T Consensus 98 ~li 100 (501)
T 3ipl_A 98 LIF 100 (501)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 75
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Probab=21.82 E-value=2.4e+02 Score=20.94 Aligned_cols=22 Identities=0% Similarity=0.128 Sum_probs=20.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHHC
Q psy9113 51 SRLTYKKLLEEVCKCANVLKSK 72 (281)
Q Consensus 51 ~~~Ty~~l~~~~~~la~~L~~~ 72 (281)
..+|+.++.+++.++|..+.+.
T Consensus 7 ~l~s~~~i~~~i~~La~~I~~~ 28 (177)
T 3ohp_A 7 VMISEQEVAQRIRELGQQITEH 28 (177)
T ss_dssp EEECHHHHHHHHHHHHHHHHHH
T ss_pred EeeCHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999875
No 76
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=21.79 E-value=1.1e+02 Score=25.11 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 63 CKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 63 ~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
..+...+.+.++.+++.|.++|..+.....+..++..+|..
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~ 280 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKP 280 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCC
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCC
Confidence 34555666778888999999999988888888888888873
No 77
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=21.76 E-value=1e+02 Score=27.79 Aligned_cols=77 Identities=6% Similarity=-0.195 Sum_probs=55.0
Q ss_pred eEEEechhHHHHHHHhhhh---hc-cCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceee
Q psy9113 144 GVLHTTGGYLLYAATTHKY---VF-DYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITG 219 (281)
Q Consensus 144 ~v~~s~~~l~~~~~~~~~~---~~-~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i 219 (281)
...+|+..+.. .....+. .. ++.++|++...+|-+..+ ...+++++..|+..+.+ +. ...++.+...+
T Consensus 71 ~~~~Ty~el~~-~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Ga~~vpl--~~---~~~~~~l~~~l 142 (570)
T 3c5e_A 71 ELMWNFRELSE-NSQQAANVLSGACGLQRGDRVAVVLPRVPEW--WLVILGCIRAGLIFMPG--TI---QMKSTDILYRL 142 (570)
T ss_dssp EEEEEHHHHHH-HHHHHHHHHHTTTCCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEC--CT---TCCHHHHHHHH
T ss_pred eeEEeHHHHHH-HHHHHHHHHHHccCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEec--CC---CCCHHHHHHHH
Confidence 35788887776 3333332 23 788999998888876544 45789999999998888 42 45667777777
Q ss_pred eeeccceec
Q psy9113 220 HTYVVYGPL 228 (281)
Q Consensus 220 ~~~~vt~~~ 228 (281)
+..++..++
T Consensus 143 ~~~~~~~vi 151 (570)
T 3c5e_A 143 QMSKAKAIV 151 (570)
T ss_dssp HHHTCSEEE
T ss_pred HhcCCeEEE
Confidence 777777765
No 78
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.70 E-value=1.5e+02 Score=21.97 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEe
Q psy9113 66 ANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107 (281)
Q Consensus 66 a~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l 107 (281)
+.+|.+.|+.+...+.+...+..+.+.++==+++.|...+.+
T Consensus 89 ~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl 130 (161)
T 1oft_A 89 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVV 130 (161)
T ss_dssp HHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEE
Confidence 456667788777677777777778888888888888766555
No 79
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=21.66 E-value=2.3e+02 Score=23.57 Aligned_cols=38 Identities=8% Similarity=-0.086 Sum_probs=31.9
Q ss_pred CCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeec
Q psy9113 72 KGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS 109 (281)
Q Consensus 72 ~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~ 109 (281)
.|+.+++.|+++|..++...+..+|+..+|..-+-+..
T Consensus 270 ~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYd 307 (327)
T 3utn_X 270 CTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYD 307 (327)
T ss_dssp CCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEES
T ss_pred cCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCC
Confidence 37888999999999999999999999999986554443
No 80
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=21.40 E-value=1.4e+02 Score=20.80 Aligned_cols=39 Identities=5% Similarity=-0.083 Sum_probs=29.3
Q ss_pred HHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 65 CANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 65 la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
+...+...++.+++.|.++|.++.....+...+...|..
T Consensus 79 ~~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 79 FEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp HHHHHSSCCCCTTSEEEEECSSSHHHHHHHHHHHTTTCC
T ss_pred HHHHHhccCCCCCCeEEEECCCCchHHHHHHHHHHcCCC
Confidence 334444456778889999999998887777777888874
No 81
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=21.40 E-value=3e+02 Score=23.81 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHC--CCCCCCEEEEEeCCc-HHHHH-HHHHHHHhcCeEEEee
Q psy9113 59 LEEVCKCANVLKSK--GVQKGDRVAIYLPMV-LEIVV-TMLACARIGAVHSIVV 108 (281)
Q Consensus 59 ~~~~~~la~~L~~~--g~~~g~~V~l~~~n~-~~~~~-~~lA~~~~G~~~v~l~ 108 (281)
..+..+.|..+.+. ++++|+.|.|..+.. .+++- ..-++..+|+-++.+.
T Consensus 5 ~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 45677788877775 689999999999864 34443 3445667899888654
No 82
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=21.29 E-value=3.3e+02 Score=24.52 Aligned_cols=71 Identities=8% Similarity=0.012 Sum_probs=48.5
Q ss_pred CCCCCcc-ccCCCCC----CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcH--HHHH-HHHHHHHhcCeEEEe
Q psy9113 36 TPMKPGA-AGNDPDD----YSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVL--EIVV-TMLACARIGAVHSIV 107 (281)
Q Consensus 36 ~pd~~a~-~~~~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~--~~~~-~~lA~~~~G~~~v~l 107 (281)
.|+.+|+ ++..+.+ +..+|.+.+...+......+ ++.+++++....+-.. +... .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 3566664 4554443 35789999888777665544 6889999998887543 3332 478888889988875
Q ss_pred ec
Q psy9113 108 VS 109 (281)
Q Consensus 108 ~~ 109 (281)
+.
T Consensus 259 ~~ 260 (617)
T 3rg2_A 259 AD 260 (617)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 83
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=21.20 E-value=1.8e+02 Score=23.15 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=42.8
Q ss_pred eeeeHHHHHH-----HHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe-EEEeecCC
Q psy9113 51 SRLTYKKLLE-----EVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-HSIVVSKC 111 (281)
Q Consensus 51 ~~~Ty~~l~~-----~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~-~v~l~~~~ 111 (281)
..+.+.++.+ ....+...+.+.++.+++.|.++|.++.....+..++...|.. +..++..+
T Consensus 199 ~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~ 265 (280)
T 1urh_A 199 LNVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAW 265 (280)
T ss_dssp EECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSC
T ss_pred eEeeHHHhhcCCccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChH
Confidence 4566666654 1234555566668888999999999998888888888889974 44444443
No 84
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=21.16 E-value=1.6e+02 Score=26.08 Aligned_cols=76 Identities=12% Similarity=-0.056 Sum_probs=55.8
Q ss_pred EEEechhHHHHHHHhhhh---hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 145 VLHTTGGYLLYAATTHKY---VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 145 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
-.+|+..+.. .....+. ..++.++|++...+|-+..+ ...+++++..|+..+.+ +. ...++.+...++.
T Consensus 48 ~~~Ty~el~~-~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~la~~~~Gav~vpl--~~---~~~~~~l~~~l~~ 119 (536)
T 3ni2_A 48 DVYTYADVEL-TARRVASGLNKIGIQQGDVIMLFLPSSPEF--VLAFLGASHRGAIITAA--NP---FSTPAELAKHAKA 119 (536)
T ss_dssp CEEEHHHHHH-HHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC--CT---TCCHHHHHHHHHH
T ss_pred CEEEHHHHHH-HHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCEEecc--CC---CCCHHHHHHHHHh
Confidence 3578887766 3333332 35788999999988877544 46789999999998888 42 4567777788888
Q ss_pred eccceec
Q psy9113 222 YVVYGPL 228 (281)
Q Consensus 222 ~~vt~~~ 228 (281)
.++..++
T Consensus 120 ~~~~~~i 126 (536)
T 3ni2_A 120 SRAKLLI 126 (536)
T ss_dssp HTEEEEE
T ss_pred cCCEEEE
Confidence 8888866
No 85
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=21.06 E-value=1.3e+02 Score=26.59 Aligned_cols=75 Identities=12% Similarity=-0.044 Sum_probs=54.5
Q ss_pred EEechhHHHHHHHhhh---hhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeee
Q psy9113 146 LHTTGGYLLYAATTHK---YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTY 222 (281)
Q Consensus 146 ~~s~~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~ 222 (281)
.+|+..+.. .....+ ...++.++|++...+|-+..+ ...+++++..|+..+.+ +. ...++.+...+++.
T Consensus 48 ~~Ty~el~~-~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl--~~---~~~~~~l~~~l~~~ 119 (529)
T 2v7b_A 48 STTYGELEE-RARRFASALRTLGVHPEERILLVMLDTVAL--PVAFLGALYAGVVPVVA--NT---LLTPADYVYMLTHS 119 (529)
T ss_dssp EEEHHHHHH-HHHHHHHHHHHTTCCTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEEC--CT---TCCHHHHHHHHHHH
T ss_pred CccHHHHHH-HHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEec--Cc---ccCHHHHHHHHhcc
Confidence 578887776 433333 235788999998888876543 45789999999998888 42 45677777788888
Q ss_pred ccceec
Q psy9113 223 VVYGPL 228 (281)
Q Consensus 223 ~vt~~~ 228 (281)
++..++
T Consensus 120 ~~~~vi 125 (529)
T 2v7b_A 120 HARAVI 125 (529)
T ss_dssp TCSEEE
T ss_pred CCeEEE
Confidence 888766
No 86
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=20.60 E-value=1.3e+02 Score=20.13 Aligned_cols=54 Identities=6% Similarity=-0.051 Sum_probs=37.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCC
Q psy9113 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111 (281)
Q Consensus 51 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~ 111 (281)
..+.+.++.++.. +.++.+++.|.++|.++.....+...+...|..-..+...+
T Consensus 37 i~ip~~~l~~~~~-------~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~ 90 (110)
T 2k0z_A 37 TLISVNDQEKLAD-------FLSQHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNV 90 (110)
T ss_dssp EEEETTCHHHHHH-------HHHSCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCG
T ss_pred EEcCHHHHHHHHH-------hcccCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCH
Confidence 4677777665432 23567888999999999888777778888886434444443
No 87
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=20.55 E-value=2e+02 Score=24.14 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=29.0
Q ss_pred HHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEee
Q psy9113 67 NVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVV 108 (281)
Q Consensus 67 ~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~ 108 (281)
..|.+.++++|++|++......-..+..+|- ..|+.++.+.
T Consensus 185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~ 225 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFT 225 (369)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEE
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEe
Confidence 3455568999999999987666666666664 4687755554
No 88
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=20.49 E-value=1.9e+02 Score=23.82 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCCCCCCEEEEEeCCcH-HHHHHHHHHHHhcCe-EEEee
Q psy9113 63 CKCANVLKSKGVQKGDRVAIYLPMVL-EIVVTMLACARIGAV-HSIVV 108 (281)
Q Consensus 63 ~~la~~L~~~g~~~g~~V~l~~~n~~-~~~~~~lA~~~~G~~-~v~l~ 108 (281)
..+...+.+.|+.+++.|.+++.++. ....+.+.+...|.. +..++
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~ 144 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLN 144 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEET
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEcc
Confidence 46777788889999999999998765 555555666677874 33443
No 89
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.24 E-value=1.9e+02 Score=23.90 Aligned_cols=40 Identities=28% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEee
Q psy9113 68 VLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVV 108 (281)
Q Consensus 68 ~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~ 108 (281)
.|.+.++++|++|++......-..+..+|- ..|+.++.+.
T Consensus 168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~ 207 (348)
T 3two_A 168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFA 207 (348)
T ss_dssp HHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEEC
T ss_pred HHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEe
Confidence 455668999999999987556666666654 5688766554
Done!