RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9113
(281 letters)
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 168 bits (427), Expect = 7e-48
Identities = 53/64 (82%), Positives = 61/64 (95%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGVLHTTGGYL+YAA T KYVFDYK GD+YWCTADVGW+TGH+Y+VYGPLANGA
Sbjct: 255 GSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGA 314
Query: 197 TSVI 200
T+++
Sbjct: 315 TTLM 318
Score = 121 bits (305), Expect = 6e-31
Identities = 42/64 (65%), Positives = 52/64 (81%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP D ++TY++L EVC+ AN LKS GV+KGDRVAIY+PM+ E V MLACARIGAV
Sbjct: 90 GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149
Query: 104 HSIV 107
HS+V
Sbjct: 150 HSVV 153
Score = 96.7 bits (242), Expect = 1e-22
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
W+WYY +GG +C IVDT+WQTETGG ++TPLPG TP+KPG+A
Sbjct: 384 WEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSAT 427
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 162 bits (413), Expect = 2e-46
Identities = 61/218 (27%), Positives = 88/218 (40%), Gaps = 68/218 (31%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
+ + LTY L EV + AN LK G KGDRVAIY+P E V+ +LA ARIGA+
Sbjct: 33 GEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIP 92
Query: 105 SIVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKG-------------------- 144
++V + A ++R L + ++ G
Sbjct: 93 AVVSP------GLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVP 146
Query: 145 -----------------------------VLHTTG-------------GYLLYAATTHKY 162
+L+T+G GYL+ T K+
Sbjct: 147 RLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKF 206
Query: 163 VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
D PGD +W ++D GWI G Y V+ PLA+GAT+V+
Sbjct: 207 HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVL 244
Score = 51.5 bits (124), Expect = 2e-07
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
++W+Y ++G I+D + QTETG + P P+K G++G
Sbjct: 307 FEWFYSALG---VWILDIYGQTETGMGFIAGRP---PVKNGSSG 344
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 158 bits (403), Expect = 1e-44
Identities = 52/64 (81%), Positives = 60/64 (93%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGV+HTTGGYL+YAATT KYVFD P D+YWCTAD+GWITGH+Y+VYGPLANGA
Sbjct: 235 GSTGKPKGVVHTTGGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIVYGPLANGA 294
Query: 197 TSVI 200
T+V+
Sbjct: 295 TTVM 298
Score = 123 bits (310), Expect = 9e-32
Identities = 39/64 (60%), Positives = 51/64 (79%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G D+ +TY++L EVC+ ANVLKS GV+KGDRVAIY+PM+ E+ + MLACARIGA+
Sbjct: 70 GEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAI 129
Query: 104 HSIV 107
HS+V
Sbjct: 130 HSVV 133
Score = 96.5 bits (241), Expect = 2e-22
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
W WYY IG +C IVDT+WQTETGGH++TPLPG TP+KPG+A
Sbjct: 364 WMWYYEVIGKERCPIVDTWWQTETGGHMITPLPGATPLKPGSAT 407
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 157 bits (399), Expect = 5e-44
Identities = 55/64 (85%), Positives = 60/64 (93%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGVLHTTGGYLLYAA T KYVFD K GDI+WCTADVGWITGH+Y+VYGPLANGA
Sbjct: 246 GSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGA 305
Query: 197 TSVI 200
T+V+
Sbjct: 306 TTVM 309
Score = 117 bits (295), Expect = 1e-29
Identities = 39/64 (60%), Positives = 53/64 (82%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G++P + ++TY++L EVC+ ANVLKS GV+KGDRVAIY+PM+ E + MLACARIGA+
Sbjct: 80 GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAI 139
Query: 104 HSIV 107
HS+V
Sbjct: 140 HSVV 143
Score = 92.3 bits (230), Expect = 4e-21
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
W WYY +G +C IVDT+WQTETGG ++TPLPG TP KPG+A
Sbjct: 375 WMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSAT 418
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 140 bits (354), Expect = 8e-38
Identities = 83/242 (34%), Positives = 121/242 (50%), Gaps = 54/242 (22%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
GN+P + LTY +LL+ VC+ AN LK GV+KGD V IYLPM++E+ + MLACARIGAV
Sbjct: 112 GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAV 171
Query: 104 HSIVVSKCSGDDMS------------TVPANSERERKLKLRKVVTGSTGKPKGVLHTTGG 151
HS+V + S + ++ T A + + L+ +V + + + G
Sbjct: 172 HSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGI 231
Query: 152 YLLY--AATTHKYVFDYKPG-DIYW--------CTADVGWI--------------TG--- 183
L Y + ++ G D++W +V W+ TG
Sbjct: 232 CLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 291
Query: 184 ---HT---YVVYGPLANGATSVIVSL---PGEIYWCTADVGWITGHTYVVYGPLANGATS 234
HT Y+VY AT+ + P ++YWCTAD GWITGH+YV YGP+ NGAT
Sbjct: 292 GVLHTTGGYMVY-----TATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATV 346
Query: 235 VI 236
++
Sbjct: 347 LV 348
Score = 71.9 bits (176), Expect = 4e-14
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+W+++ +G +C I DT+WQTETGG ++TPLPG P KPG+A
Sbjct: 414 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 456
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 131 bits (331), Expect = 2e-35
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 15/163 (9%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
+Y++L E + ANVL S GV KG+RV LP E+ V L ++GAV+ + S
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 113 GDDMSTVPANSERE-----RKLKLR---------KVVTGSTGKPKGVLHTTGGYLLYAAT 158
+ + E + +L R +G+TGKPKGVLH + + AT
Sbjct: 61 PEPIRDRLELGEAKVLITTPELYERTDPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYAT 120
Query: 159 THKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIV 201
+YV D +P D+YWCTAD GW+TG +Y + PL NG T V+
Sbjct: 121 A-RYVLDLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVD 162
Score = 35.1 bits (81), Expect = 0.031
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
I DT+WQTETG ++ P P+KPG+ G
Sbjct: 235 IHDTWWQTETGAIMIANYP-GIPVKPGSMG 263
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 127 bits (321), Expect = 8e-34
Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 19/167 (11%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS- 109
TY +L EV + A+ L + G+ KGDRV IY+PM+ E VV +LA A+IGA+ + S
Sbjct: 6 RTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSG 65
Query: 110 -----------KCSGDDMSTVPANSERERKLKLRK------VVTGSTGKPKGVLHTTGGY 152
+ T R +++ L+ +G+TGKPKG +HT G+
Sbjct: 66 FGPDAVATRLQDAEAKVLITADGFLRRGKRVDLKDDPAMIIYTSGTTGKPKGTVHTHAGF 125
Query: 153 LLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSV 199
+ AA + FD KPGD D+GW+ G ++V G L GAT V
Sbjct: 126 PVKAAKDIGFCFDLKPGDRLLWITDMGWMMG-PWLVLGGLLLGATIV 171
Score = 38.0 bits (89), Expect = 0.004
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGA 42
W W + +GGG+ I++ TE G +L +P P+KP +
Sbjct: 238 WLWLFERVGGGRAPIINYSGGTEISGGILGNVP-IRPIKPCS 278
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 113 bits (284), Expect = 1e-28
Identities = 54/159 (33%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSG 113
T+ +L EE + AN LK GV +GDRVA+ LP V E+ +L C ++GAV G
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVF------IPG 55
Query: 114 DDMSTVPANSERERKLKLRKVVT------------GSTGKPKGVLHTTGGYLLYAATTHK 161
R + R +VT G+TG PK VLHT Y L T
Sbjct: 56 TTQLGPKDIRYRLERAGARAIVTSADDPALLYFTSGTTGLPKMVLHTH-SYPLGHLVTGA 114
Query: 162 YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
Y D +P D++W AD GW G ++ P GA +
Sbjct: 115 YWLDLRPDDLHWTIADPGWAKGAWSSLFAPWLLGAAVFV 153
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 101 bits (253), Expect = 3e-24
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 56/231 (24%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
LTY++L EV A+ L++ GV +GDRV IY+PM+ E V MLACARIGA+HS+V +
Sbjct: 84 LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFA 143
Query: 113 GDDMST----------VPANSER------ERKLKLRKVVTGSTGKPKGVL---------- 146
++ V A++ K L + + P VL
Sbjct: 144 SHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR 203
Query: 147 HTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGH--TYVVYGPLANG--------- 195
G + YAA ++ P V W+ + +Y++Y G
Sbjct: 204 LIPGRDVDYAALRTQHEDAQVP---------VEWLESNEPSYILYTSGTTGKPKGVQRDV 254
Query: 196 ---ATSVIVSLP-------GEIYWCTADVGWITGHTYVVYGPLANGATSVI 236
A ++ +S+ G++ + +DVGW+ GH+Y+VY PL GA +V+
Sbjct: 255 GGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVL 305
Score = 81.9 bits (202), Expect = 2e-17
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TGKPKGV GGY + A + +F + G + + +DVGW+ GH+Y+VY PL G
Sbjct: 241 SGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAG 300
Query: 196 ATSVIVS-LP----GEIYW 209
A +V+ LP ++W
Sbjct: 301 AATVLYEGLPTNPDPGVWW 319
Score = 30.3 bits (68), Expect = 1.3
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 15 IVDTFWQTETGGHVLTPLPGC--TPMKPGAAG 44
++D +WQTETG VL +PG P+K G+ G
Sbjct: 382 VIDNYWQTETGWPVLAIMPGLDLKPVKLGSPG 413
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 98.2 bits (245), Expect = 4e-23
Identities = 33/65 (50%), Positives = 50/65 (76%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TGKPKGV+ TGGY + + + ++ KPGD++W +DVGW+ GH+Y+VYGPL +G
Sbjct: 229 SGTTGKPKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLHG 288
Query: 196 ATSVI 200
AT+V+
Sbjct: 289 ATTVL 293
Score = 94.3 bits (235), Expect = 1e-21
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
TY +L +EV + A VL+ GV KGDRV IY+PM+ E V+ MLACARIGA+HS+V
Sbjct: 73 TYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVV 128
Score = 35.0 bits (81), Expect = 0.039
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 15 IVDTFWQTETGGHVLTPLPG--CTPMKPGAAG 44
++D +WQTETG + G P+KPG+ G
Sbjct: 373 VIDHWWQTETGWPITANCVGLELLPIKPGSPG 404
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 98.0 bits (245), Expect = 5e-23
Identities = 36/65 (55%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGVLH L + T KYV D D+YWCTAD GW+TG +Y ++ P NGA
Sbjct: 215 GSTGKPKGVLHVHNAMLQHYQTG-KYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGA 273
Query: 197 TSVIV 201
T+VI
Sbjct: 274 TNVID 278
Score = 56.8 bits (138), Expect = 3e-09
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
D + TYK+L E K ANVLK GV+KGDRV I++P + E+ +L + GA+
Sbjct: 67 DASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI 124
Score = 38.0 bits (89), Expect = 0.005
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
I D +W TETGG ++ P +KPG+ G
Sbjct: 351 IHDNWWMTETGGIMIANYP-AMDIKPGSMG 379
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 96.6 bits (241), Expect = 2e-22
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TGKPKGV TGGY + AT+ +F K G+ ++C +D+GW+ GH+Y+VY PL G
Sbjct: 243 GTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGM 302
Query: 197 TSVIVS-LP----GEIYW 209
+++ LP I+W
Sbjct: 303 ATIMYEGLPTRPDAGIWW 320
Score = 90.0 bits (224), Expect = 3e-20
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
T+++L +EV + A +L+S GVQ+GDRV IY+PM+ E MLACARIGA+HS+V
Sbjct: 84 TYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVV 139
Score = 35.7 bits (83), Expect = 0.024
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 15 IVDTFWQTETGGHVLTPLPGC--TPMKPGAAG 44
++D +WQTETG +L G P + G+ G
Sbjct: 383 VIDNYWQTETGWPILAIARGVEDRPTRLGSPG 414
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 92.1 bits (229), Expect = 4e-21
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 26/166 (15%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS--- 109
L+Y +L E+ + AN+L GV+ GDRVA LP E+VV +LA R+GA++ + +
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 110 ------KCSGDDMSTVPANSERERKLK----LRKVVTGSTGKPKGV------LHTTGGYL 153
+ V N+ KL + +G+TG PKGV L Y+
Sbjct: 61 PKAIEYRLGHSGAKVVVTNAANRGKLDDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYM 120
Query: 154 LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSV 199
YA D + D++W AD GW G Y + GPLA G T+V
Sbjct: 121 RYAI-------DLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTV 159
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 88.4 bits (220), Expect = 6e-20
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS-- 109
R TY +L E V + A L + GV+ GDRVA+ L E + A ++GAV V
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAV---AVPIN 59
Query: 110 -KCSGDDMSTVPANSERERKLKLRKVVT---------GSTGKPKGVLHTTGGYLLYAATT 159
G++++ + +S R +V G+TG PKGVL T LL+AA
Sbjct: 60 TALRGEELAHILDHSG------ARLIVVDTAAILYTSGTTGPPKGVL-LTHAQLLFAARL 112
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIV 201
+ +P D+ + I Y VY L GAT V++
Sbjct: 113 AARLLGLRPDDVLLTPLPLFHINAQAYSVYAALLVGATLVLL 154
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 87.0 bits (216), Expect = 2e-19
Identities = 43/206 (20%), Positives = 66/206 (32%), Gaps = 59/206 (28%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRV---------------------AIYLPM------ 86
TY++L E + A L++ GV GDRV A Y+P+
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 87 --------------------VLEIVVTMLACARIGAVHSIVVSKCSGDDMSTVPANSERE 126
+L ++ +L + IV G D+ +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120
Query: 127 RKLKLRKVV---------T-GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTA 176
+ V T G+TGKPKGV+ T L AA + +
Sbjct: 121 AEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLP 180
Query: 177 DVGWITGHTYVVYGPLANGATSVIVS 202
G + ++GPL G T V+V
Sbjct: 181 --LHFDGSVWEIFGPLLAGGTLVLVP 204
Score = 35.8 bits (83), Expect = 0.021
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
+ G +V+ + TET LPG +KPG+ G
Sbjct: 264 LRRLRE--RFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIG 305
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 86.6 bits (215), Expect = 2e-19
Identities = 50/152 (32%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 47 PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSI 106
T+ +L + + AN L+ GV++GDRV +YLP E + LA ++GAV S+
Sbjct: 1 DGTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAV-SV 59
Query: 107 VVSKCSGDDMSTVPANSERERKLKLRKVVT-------------GSTGKPKGVLHTTGGYL 153
+S G D A R R R +VT G+TG PKG LH L
Sbjct: 60 PLSVLFGPD-----AVEHRLRDSGARVLVTDGSDDPAILIYTSGTTGPPKGALHGH-RVL 113
Query: 154 LYAATTHKYVFDY--KPGDIYWCTADVGWITG 183
L + F+ +PGD++W AD WI G
Sbjct: 114 LGHLPGVELYFELAPRPGDVFWTPADWAWIGG 145
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 82.8 bits (205), Expect = 5e-18
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 22/165 (13%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LTY++L + + ANVL++ GV GDRV + LP E+V LAC + GAV +
Sbjct: 10 SLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLL 69
Query: 112 SGDDMSTVPANSERERKLKLRKVVT------------GSTGKPKGVLHTTGGYLLYAATT 159
+ D+ + +S +VT G+TGKPKGV+H L +A
Sbjct: 70 TPQDLEHILDDSG------AALLVTEADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAF 123
Query: 160 HKYVFDYKPGDIYWCTADV--GWITGHTYVVYGPLANGATSVIVS 202
+ + +PGD + ++ + + G++ + PL +GA++V++
Sbjct: 124 ARELLGLQPGDRIFSSSKLFFAYGLGNS--LLFPLFSGASAVLLP 166
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 81.1 bits (201), Expect = 2e-17
Identities = 58/179 (32%), Positives = 77/179 (43%), Gaps = 44/179 (24%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
RLTY +L + + A L GV+ GD VA LP E VV LACARIGAV + +
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPI---- 56
Query: 112 SGDDMSTVPANSERE-----RKLKLRKVVT-----------------------GSTGKPK 143
VP ERE R+ + R + G+TG+PK
Sbjct: 57 -------VPIYRERELGFILRQARARVLFVPDEFRGFDYAAMPDDVALLLYTSGTTGEPK 109
Query: 144 GVLHT--TGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
GV+HT T LL ++ P D+ + + ITG Y + PL GAT V+
Sbjct: 110 GVMHTHNT---LLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVL 165
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 74.0 bits (182), Expect = 6e-15
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
+Y +L + + AN L+ GV++GDRV + LP V E+ MLA ++GAV + +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60
Query: 113 GDDM---------STVPANSERERKLKLRKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV 163
D+ + A+ R L +G+TG PK VLHT Y + +T Y
Sbjct: 61 PADLRDRFSRGKPKAIVADETRADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLST-MYW 119
Query: 164 FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204
+PGDI+ + GW + P GAT ++ P
Sbjct: 120 IGLQPGDIHLNISSPGWAKHAWSSFFAPWNAGATVFGINYP 160
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 71.6 bits (176), Expect = 3e-14
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH------- 104
+TY +LLE V + A +L+ KGV+KGDRVA+Y+ + V+ A R GAV
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 105 --------------SIVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTG 150
+++ DD++ +P S G+TG PKG +HT
Sbjct: 61 REAELEHILNDSGARVLIVGSELDDVAVIPYTS-------------GTTGLPKGCMHTHR 107
Query: 151 GYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
+L A P + + + G + P+ GAT V+++
Sbjct: 108 T-VLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLT 158
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 70.3 bits (173), Expect = 1e-13
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LT+++L + V + A L + GV++GDRVA+ +E ++ LA R+GAV
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAV-------- 52
Query: 112 SGDDMSTVPAN-----SERERKLKLRKVVT----------GSTGKPKGVLHTTGGYLLYA 156
+P N E +++L + GSTGKPK V+HT G L +
Sbjct: 53 ------VLPLNPRLPQEELQQQLADLQPDLDRPATIIFTSGSTGKPKAVVHTWGN-HLAS 105
Query: 157 ATTHKYVFDYKPGD 170
A P D
Sbjct: 106 ARGSAENLGLTPDD 119
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 69.2 bits (170), Expect = 2e-13
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TGKPKGV+ + L A + GD+ + + G + G L G
Sbjct: 9 SGTTGKPKGVVLSHRNLLANAQALAQA-IGLTEGDVLLSVLPLFHVVGGGSGLLGALLAG 67
Query: 196 ATSVIVS 202
T V+
Sbjct: 68 GTVVLYE 74
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 68.6 bits (169), Expect = 3e-13
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 48/177 (27%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LTY++L E + A+ L+++GV GD VAI L E+VV +LA + GA +
Sbjct: 12 SLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKAGAAY------- 64
Query: 112 SGDDMSTVPANSE--RER--------KLKLRKVVT------------GSTGKPKGVLHTT 149
VP + ER KL ++T GSTG+PKGV+
Sbjct: 65 -------VPLDPAYPAERLAYMLEDSGAKL--LLTDPDDLAYVIYTSGSTGRPKGVMVEH 115
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTA----DVGWITGHTYVVYGPLANGATSVIVS 202
G L+ + + GD A D + ++ PL +GAT V+
Sbjct: 116 RG-LVNLLAWLQERYGLTAGDRVLQFASFSFDAS-----VWEIFPPLLSGATLVLAP 166
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 67.9 bits (166), Expect = 7e-13
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
RLTY++L + A L++ GV+ GDRVAI LP E ++ LA R GAV
Sbjct: 38 RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAV 89
Score = 38.2 bits (89), Expect = 0.003
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYV-FDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
G+TG PKGV+ T L AA + P D+ + I G + PL G
Sbjct: 181 GTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGG 240
Query: 196 ATSVIVS 202
T V++S
Sbjct: 241 GTLVLLS 247
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 67.1 bits (165), Expect = 1e-12
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
L++ +L +V A L++ GV GDRVA YLP + E VV MLA A +GA+ S C
Sbjct: 114 ELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSS----C 169
Query: 112 SGD 114
S D
Sbjct: 170 SPD 172
Score = 39.4 bits (93), Expect = 0.002
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGD-IYWCTADVGWITGHTYVVYGPLANG 195
G+TG PK ++H GG LL D PGD +W T GW+ + ++V G L G
Sbjct: 273 GTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTT-CGWMMWN-WLVSG-LLVG 329
Query: 196 ATSVI 200
AT V+
Sbjct: 330 ATLVL 334
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 65.2 bits (159), Expect = 5e-12
Identities = 50/200 (25%), Positives = 73/200 (36%), Gaps = 60/200 (30%)
Query: 64 KCANVL-KSKGVQKGDRVAIYLPMVLEIVVTMLACARIG--------------------- 101
K ANVL + G+Q+GDRVA+ LP V E + +AC R G
Sbjct: 53 KAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQA 112
Query: 102 --------------AVHSIVVSKCSGDDMSTVPANSERERKLKLRKVV------------ 135
AV SI S+C + + R+ L ++++
Sbjct: 113 SKAKCIVTSDELAPAVDSIA-SECPSLKTKLLVSEHSRDGWLNFKELLKEASTEHTCVKT 171
Query: 136 -----------TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGH 184
+G+TG PK H+ L +Y D P DI W +D GWI
Sbjct: 172 KSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAA 231
Query: 185 TYVVYGPLANGATSVIVSLP 204
+ ++ P GA + LP
Sbjct: 232 IWSLFSPWIQGACVFVHHLP 251
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 65.0 bits (159), Expect = 6e-12
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 40 PGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99
A D LTY +L + A L + G+ GDRVA+ P E VV LA R
Sbjct: 1 DRIALVDGGR--SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWR 58
Query: 100 IGAVHSIVVSKCSGDDMSTVPANSERERKLKLRKVV--TGSTGKPKGVLHT 148
G V + +++ + ++S+ + ++ +G+TG+PKGV+ T
Sbjct: 59 AGGVAVPLNPSYPAAELAYILSDSQPSLLVDPALIIYTSGTTGRPKGVVLT 109
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 65.0 bits (159), Expect = 6e-12
Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 58/210 (27%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
D LTY +L EEV + N L+ G+++ +RV + L E +IGAV +
Sbjct: 26 YDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPI 85
Query: 108 VSKCSGDDM---------STVPANSERERKLK--------LRKVV--------------- 135
+ + DD + + E LK LR V+
Sbjct: 86 NTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQL 145
Query: 136 ------------------------TGSTGKPKGVLHTTGGYLLYAATTH-KYVFDYKPGD 170
+GSTG+PKGV+H +L A + K V D
Sbjct: 146 IATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHD-MLVTAEAYAKNVLGITEDD 204
Query: 171 IYWCTADVGWITGHTYVVYGPLANGATSVI 200
+ + A + + G +Y PL+ GAT+V+
Sbjct: 205 VVFSAAKLFFAYGLGNGLYFPLSVGATTVL 234
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 64.9 bits (159), Expect = 6e-12
Identities = 46/174 (26%), Positives = 68/174 (39%), Gaps = 21/174 (12%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
+ +T+ +L E V + A L + GV+ GDRVAI E V+ LA GAV +
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 108 VSKCSGDDMSTVPANSERERKLKLRKVVT--------------GSTGKPKGVLHTTGGYL 153
S ++++ + +S R V G+TG PKGV+ T L
Sbjct: 61 YPTSSPEEVAYILNDSG------ARVVFVEDKPDDLATLIYTSGTTGNPKGVMLTHRN-L 113
Query: 154 LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
L A V PGD + + Y PL++GA P +
Sbjct: 114 LAQAAALLEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPETL 167
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 64.5 bits (158), Expect = 8e-12
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+LTY +L E + A L+ GV+KGDRVA+ LP + + + GAV
Sbjct: 24 KLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAV 75
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 64.1 bits (157), Expect = 1e-11
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 44/176 (25%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSK 110
LTY +L E + A L + G + GD VA+Y + +LAC + GA +
Sbjct: 15 DTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAY------ 68
Query: 111 CSGDDMSTVPAN----SERERKL----KLRKVVT------------GSTGKPKGVLHTTG 150
VP + +ER K+ +V GSTGKPKGV +
Sbjct: 69 --------VPLDPSQPAERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHA 120
Query: 151 GYLLYAATTHKYVFDYKPGDIYWCTA----DVGWITGHTYVVYGPLANGATSVIVS 202
+ + FD GD++ A D+ + ++ LA+GAT ++
Sbjct: 121 NLASFLDWMVE-DFDLTEGDVFSNQAPFSFDLS-----VFDLFPALASGATLYVIP 170
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 63.4 bits (155), Expect = 2e-11
Identities = 50/186 (26%), Positives = 70/186 (37%), Gaps = 42/186 (22%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS-- 105
D RLTY++L V + A L + G+ GDRV + LP V E V+ A ++GA+
Sbjct: 36 DGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLA 95
Query: 106 ---------------------IVVSKCSGDDMSTVPANSERERKLKLRKVVT-----GST 139
I+ + SG D A RE +L V G+T
Sbjct: 96 LPAHRAHEIGHFARQSEAKAYIIADRFSGFDY----AALARELLEELPDVALFQLSGGTT 151
Query: 140 GKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGP-----LAN 194
G PK + T Y LY+A PG +Y H + + P L
Sbjct: 152 GLPKLIPRTHNDY-LYSARASAEACGLDPGTVYLAVLPA----AHNFTLSSPGLLGALLA 206
Query: 195 GATSVI 200
G T V+
Sbjct: 207 GGTVVL 212
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 61.8 bits (151), Expect = 7e-11
Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 61/200 (30%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
LTY +L E + A L+++GV GD VA+ L E+VV +LA + GA
Sbjct: 12 SLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAY 71
Query: 104 ---------------------HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT------ 136
+++ + + + E V
Sbjct: 72 PAERLAFMLEDSGARVLLTDESLAPLARADQLPLVILEEELDAEDAGPPAPAVDADDLAY 131
Query: 137 -----GSTGKPKGVLHTTGGYLLYAATTHKYVF------DY---KPGDIYWCTADVGWIT 182
GSTG+PKGV A H+ V +Y P D + + + +
Sbjct: 132 VMYTSGSTGRPKGV-----------AVPHRGVVRLVRNTNYIALDPDDRFLQLSPLSF-D 179
Query: 183 GHTYVVYGPLANGATSVIVS 202
T+ ++G L NG V++
Sbjct: 180 ASTFEIWGALLNGGRLVLID 199
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 61.0 bits (149), Expect = 1e-10
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R TY +L E V + AN L++ GV+KGDRVA++ E + A +IGAV
Sbjct: 31 RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV 82
Score = 28.6 bits (65), Expect = 3.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 136 TGSTGKPKGVLHT 148
+G+TG PKGV+ +
Sbjct: 176 SGTTGHPKGVVLS 188
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 60.2 bits (146), Expect = 2e-10
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
LTY L E V A+ L+ G+ +G+RVAIYL LE V M A G V
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVF 77
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 60.3 bits (147), Expect = 2e-10
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
+++ +L +V + A L+ GV+ GDRVA YLP V E V+ MLA A IGA+ S C
Sbjct: 86 EISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSS----C 141
Query: 112 SGD 114
S D
Sbjct: 142 SPD 144
Score = 43.4 bits (103), Expect = 8e-05
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG PK ++H GG LL H D +PGD + GW+ + V L +GA
Sbjct: 246 GTTGLPKCIVHGAGGTLLQHLKEHGLHCDLRPGDRLFYYTTTGWMMWNWLV--SGLLSGA 303
Query: 197 TSVI 200
T V+
Sbjct: 304 TLVL 307
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 60.2 bits (147), Expect = 2e-10
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R TY++ EEV A L + G++KGDRV I+ P V E V+T A A+IGA+
Sbjct: 43 RWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAI 94
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 60.1 bits (146), Expect = 3e-10
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
+LTY +L E+VC+ + VL + + K D V IY+ LE ++ ML+CARIGA H ++
Sbjct: 92 KLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVL 147
Score = 38.2 bits (89), Expect = 0.004
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TG K V+ + G +L+ + + + + + + +GW++ H + +YG L+ G
Sbjct: 263 SGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGF-LYGSLSLG 321
Query: 196 ATSVI 200
T V+
Sbjct: 322 NTFVM 326
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 57.6 bits (140), Expect = 2e-09
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 34/118 (28%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
DD L+Y +L E + A L++ GV GDRV + L ++V +LA + GA +
Sbjct: 8 DDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAY--- 64
Query: 108 VSKCSGDDMSTVPAN----SERERKL----KLRKVVT------------GSTGKPKGV 145
VP + +ER + + + ++T GSTGKPKGV
Sbjct: 65 -----------VPLDPSYPAERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKGV 111
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 57.2 bits (139), Expect = 2e-09
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
TY +L V + A L G++KGDRVA + LACAR GAVH
Sbjct: 36 SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88
Score = 29.5 bits (67), Expect = 2.3
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 27/81 (33%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYV-----FDYKPGDI-------YWCTADVGWITGH 184
G+ PKG + T A +YV D DI Y C
Sbjct: 181 GTESLPKGAMLTHR------ALIAEYVSCIVAGDMSADDIPLHALPLYHCAQ-------- 226
Query: 185 TYVVYGP-LANGATSVIVSLP 204
V GP L GAT+VI+ P
Sbjct: 227 LDVFLGPYLYVGATNVILDAP 247
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 56.7 bits (137), Expect = 4e-09
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA--------- 102
T+++L E K AN +++G + GD VA+++ LE V L A+IG
Sbjct: 3 HWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNL 62
Query: 103 -----VHSIVVSKCSG------DDMST-----VPANSERERKLKLRKVVT-GSTGKPKGV 145
+H I VSK D + T P+ + + KL + T G+TG PK
Sbjct: 63 RLESLLHCITVSKAKALIFNLLDPLLTQSSTEPPSQDDVNFRDKLFYIYTSGTTGLPKAA 122
Query: 146 LHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
+ Y AA + Y F +P D+ + + G V L +G+T VI
Sbjct: 123 VIVHSRYYRIAAGAY-YAFGMRPEDVVYDCLPLYHSAGGIMGVGQALLHGSTVVI 176
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 55.8 bits (135), Expect = 6e-09
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSK 110
LT+++L E + A L++ G++KGDRV + +P ++ A ++GAV ++
Sbjct: 1 DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 111 CSGDDMSTVPANSERERKLKLRKV--------VTGSTGKPKGVLHTTGGYLLYAATTH-- 160
+ +E + + + K +GSTG PKGV++T +AA
Sbjct: 61 MGRKHLGRCLEEAEPDAFIGIPKADDPAAILFTSGSTGPPKGVVYTHR---TFAAQIDAL 117
Query: 161 KYVFDYKPGDI 171
+ ++ + GD
Sbjct: 118 RSLYGIREGDR 128
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 55.8 bits (135), Expect = 8e-09
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 14 SIVDTFWQTETGGHVLTPLPGC---TPMKPG--AAGNDPDDYSRLTYKKLLEEVCKCANV 68
SI W T + L C P K A R TY++L V + A
Sbjct: 15 SIAAGHWHDRT---INDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVG 71
Query: 69 LKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
L GV +GD V+ LP E V LAC+RIGAV
Sbjct: 72 LARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAV 106
Score = 32.3 bits (74), Expect = 0.30
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 136 TGSTGKPKGVLHTT----GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGP 191
+G+TG+PKGV+HT + YA D+ + + TG Y + P
Sbjct: 206 SGTTGEPKGVMHTANTLMANIVPYAER-----LGLGADDVILMASPMAHQTGFMYGLMMP 260
Query: 192 LANGATSV 199
+ GAT+V
Sbjct: 261 VMLGATAV 268
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 55.3 bits (134), Expect = 9e-09
Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 49/176 (27%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH------- 104
LTY +L K A+ L S GV+ GD VA+ L + V +LA + GA +
Sbjct: 17 SLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAILAVLKAGAAYVPIDPSA 76
Query: 105 --------------SIVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTG 150
++V++ S DD + V S GSTGKPKGV+ T
Sbjct: 77 PVERLQFIIEDSGATVVLT-SSPDDPAYVIYTS-------------GSTGKPKGVVITHR 122
Query: 151 GY--LLYAATTHKYVFDYKPGDIYWCTA----DVGWITGHTYVVYGPLANGATSVI 200
L A + +PGD A DV + ++ L G T VI
Sbjct: 123 NICNFLRA---EGAILGIRPGDRVLQFASIAFDVSILE-----IFTTLLAGGTLVI 170
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 52.5 bits (126), Expect = 8e-08
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R T+++L + V + A L + GVQ GDRV I+ P E ++T A ARIGA+
Sbjct: 45 RYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAI 96
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 52.4 bits (126), Expect = 1e-07
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
+TY +L E + A +L+ +GV GDRVA++LP + + ++GAVH
Sbjct: 58 VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVH 110
Score = 34.2 bits (79), Expect = 0.066
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG PKG HT + AA + ++ WI G + + PL +GA
Sbjct: 219 GTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGA 278
Query: 197 TSVI 200
T V+
Sbjct: 279 TLVL 282
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 51.9 bits (125), Expect = 1e-07
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LTY +L + A L++ GV RV + L ++VV +LA + GA +
Sbjct: 24 SLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAY------- 76
Query: 112 SGDDMSTVPAN----SERERKL----KLRKVVT------------GSTGKPKGVL--HTT 149
VP + ER + R V+T GSTG+PKGV H
Sbjct: 77 -------VPLDPAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRN 129
Query: 150 GGYLLYAATTH 160
LL A
Sbjct: 130 AAALLQWAAAV 140
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 51.9 bits (125), Expect = 1e-07
Identities = 46/209 (22%), Positives = 71/209 (33%), Gaps = 52/209 (24%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105
D LTY +L V + A L ++G +KGD V + P LE V LA GAV +
Sbjct: 26 DAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVT 85
Query: 106 IVVSKCSGDDMS------------TVPANSERERKLKLRKVVT----------------- 136
+ +++ T +E+ L L VV
Sbjct: 86 TANPLYTPAEIAKQVKDSGAKLAITTSELAEKLASLALEPVVLLDSADDGSAAIDDLLFA 145
Query: 137 ----------------------GSTGKPKGVLHTTGGYLLYAATTHKYV-FDYKPGDIYW 173
G+TG+ KGV+ T + A ++ D+
Sbjct: 146 DEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTL 205
Query: 174 CTADVGWITGHTYVVYGPLANGATSVIVS 202
C + I G T ++ L GAT V++
Sbjct: 206 CVLPMFHIYGLTVILLALLRLGATVVVMP 234
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 51.8 bits (124), Expect = 2e-07
Identities = 49/218 (22%), Positives = 70/218 (32%), Gaps = 72/218 (33%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
R +Y++L V + A L GV +GD V+ LP E LACARIGAV
Sbjct: 53 RFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIF 112
Query: 104 -------------------------------------------HSIVVSKCSGDDMSTVP 120
+V+ D V
Sbjct: 113 RERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVL 172
Query: 121 ANSERERKLKLRKVVTGS----------------TGKPKGVLHTTGGYLLYAATTHKYV- 163
ER+ ++ G TG+PKGV+HT + H Y
Sbjct: 173 MTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLF---SNIHPYAE 229
Query: 164 -FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
+ GD+ + + TG Y + PL AT+V+
Sbjct: 230 RLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVL 267
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 51.5 bits (124), Expect = 2e-07
Identities = 39/223 (17%), Positives = 65/223 (29%), Gaps = 64/223 (28%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV--------- 103
LT+ LL++ + A L+ G+++GD VA+ P +E L C G +
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 104 -----HSIVVSK-----CSGDDMSTV-------------------------------PAN 122
H + +SK C D++ V P
Sbjct: 71 PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRL 130
Query: 123 SERERKLKLRKVVT-----------GSTGKPKGVLHTTGGYL--LYAATTHKYVFDYKPG 169
+ + G+TG PKGV+ + + L
Sbjct: 131 GAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSN 190
Query: 170 DIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTA 212
D+ G T + L GAT +I+ +
Sbjct: 191 DVVLTFLPFYHAYGLTTTLASLL-CGATVIIMPKFDSETFLKL 232
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 51.8 bits (124), Expect = 2e-07
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 42 AAGNDP--------DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT 93
AAG +P + + +T+ +L +V A L++ GV+ GDRV+ YLP + + VV
Sbjct: 96 AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVA 155
Query: 94 MLACARIGAVHSIVVSKCSGD 114
MLA A +GA+ S CS D
Sbjct: 156 MLATASVGAIW----SSCSPD 172
Score = 39.1 bits (91), Expect = 0.002
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TG PK ++H+ GG L+ H D PGD + GW+ + ++V G LA G
Sbjct: 273 SGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN-WLVSG-LATG 330
Query: 196 ATSVIVSLPGEIYWCTADVGW 216
AT +V G + +V W
Sbjct: 331 AT--LVLYDGSPGFPATNVLW 349
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 50.9 bits (122), Expect = 3e-07
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
L+ +L V + A L ++GV++GDRVA++LP +E VV LACAR+GA
Sbjct: 36 LSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85
Score = 33.2 bits (76), Expect = 0.15
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 108 VSKCSGDDMSTVPANSERERKLKLRKVV---TGSTGKPKGVLHTTGGYLLYAATTHKYVF 164
V + D + A ER ++ +G+T PK VLH L +A + +
Sbjct: 159 VQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIAR-AY 217
Query: 165 DYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204
Y PG + + G + ++ G LA GA +V P
Sbjct: 218 GYDPGAVLLAALPFCGVFGFSTLL-GALAGGAP--LVCEP 254
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 50.7 bits (122), Expect = 4e-07
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
RLTY +L V + A L + G+ KGDRVAI+ P V+ L + GAV
Sbjct: 26 FGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAV 81
Score = 34.9 bits (81), Expect = 0.040
Identities = 31/129 (24%), Positives = 44/129 (34%), Gaps = 10/129 (7%)
Query: 78 DRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMSTVPANSERERKLKLRKV--- 134
D A LE VV + D +ER ++ V
Sbjct: 116 DYSATTRLPALEHVVIC----ETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVADI 171
Query: 135 --VTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPL 192
+G+TG+PKG + T L AA +Y GD Y + G+ V PL
Sbjct: 172 LFTSGTTGRPKGAMLTHRQLLSNAADWAEY-LGLTEGDRYLAANPFFHVFGYKAGVNAPL 230
Query: 193 ANGATSVIV 201
GAT + +
Sbjct: 231 MRGATILPL 239
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 50.8 bits (122), Expect = 4e-07
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D +R+T +L +V + AN L + G +KGD +AI +PM + V+ LA G V
Sbjct: 200 GSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCV 259
Query: 104 HSIVVS 109
VVS
Sbjct: 260 ---VVS 262
Score = 35.8 bits (83), Expect = 0.024
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIY-WCTADVGWITGHTYVVYGPLAN 194
+G+TG+PK + T L AA ++ D + GDI W T ++GW+ G ++VY L N
Sbjct: 365 SGTTGEPKAIPWTQLTPLRAAADAWAHL-DIRKGDIVCWPT-NLGWMMGP-WLVYASLLN 421
Query: 195 GAT 197
GAT
Sbjct: 422 GAT 424
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 50.3 bits (121), Expect = 4e-07
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 44/172 (25%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
RL+Y + + A+ L++ GV+KGD VA+ + E ++ LA A++GAV
Sbjct: 3 RLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQ 62
Query: 104 ------HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT---------GSTGKPKGVLHT 148
H I VS R V+ G+TG PK +
Sbjct: 63 RGEVLAHCINVSDA--------------------RAVIVDPAFYIYTSGTTGLPKAAI-M 101
Query: 149 TGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
+ L A + KP D+ + + T LA GA+ +
Sbjct: 102 SHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGWSSALAAGASLAL 153
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 50.3 bits (121), Expect = 4e-07
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 54 TYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
TY++L E + A L++ GV GDRVA+ L E+VV +LA + GA +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAY 52
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 50.3 bits (121), Expect = 5e-07
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
RLTY +L E + A+ L ++G+ GD V IY +E V ML + AV
Sbjct: 28 RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP 80
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 50.0 bits (120), Expect = 6e-07
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 46 DPDDYS-RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
DP D TY +LL +V + AN+L S GV GD VA LP + E + G
Sbjct: 51 DPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG----GEAA 106
Query: 105 SIV 107
I
Sbjct: 107 GIA 109
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 50.0 bits (120), Expect = 6e-07
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
TY +L ++V + A L++ GV+ GDRVAI LP + +V A R+GAV
Sbjct: 59 TYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAV 108
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 48.9 bits (117), Expect = 2e-06
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 36 TPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95
TP P A D + +Y+++ E+V AN+L+ +GV+ GD VA+ LP + + + +
Sbjct: 471 TPDAPALA----DARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALH 526
Query: 96 ACARIGAV 103
A GA
Sbjct: 527 AIVEAGAA 534
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 48.3 bits (115), Expect = 2e-06
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 40 PGA-AGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98
P A A DP RLTY +L V A L ++GV+ RVA+ P ++ V+ +LA
Sbjct: 15 PDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALH 74
Query: 99 RIGAVHSIV 107
R+GAV +++
Sbjct: 75 RLGAVPALM 83
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 47.9 bits (115), Expect = 3e-06
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
++Y +L + A+ ++GV KGD VA+ + E + L A++GAV
Sbjct: 62 SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQ 121
Query: 104 ------HSIVVSK 110
HS+ +
Sbjct: 122 RGAVLAHSLNLVD 134
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 47.0 bits (112), Expect = 5e-06
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R +Y +L EE+ + AN+ S G++KGD+VA++L E + A+IGA+
Sbjct: 34 VVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAI 88
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 46.7 bits (111), Expect = 6e-06
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 54 TYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
TY + + V + A+ L + VQ GD VAI E V LA IGAV + + S
Sbjct: 7 TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYNLS 66
Query: 113 GD------DMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTG 150
GD +S +G+TG PKG +
Sbjct: 67 GDPLIHCLKISGAKFVIVDPDDPAALIYTSGTTGLPKGCAISWR 110
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 46.8 bits (112), Expect = 6e-06
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
D R TY L + AN+L + GV+ GDRVA+ + E + LA R GAV
Sbjct: 24 PDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAV 79
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 47.0 bits (112), Expect = 6e-06
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGD 78
+WQ T +LT P + D RL+Y +L + + A L+ G++ GD
Sbjct: 24 YWQDRTLTDILTDHAARYPDRIAVI----DGERRLSYAELDQRADRLAAGLRRLGIKPGD 79
Query: 79 RVAIYLPMVLEIVVTMLACARIGA 102
V + LP V E +T A R+G
Sbjct: 80 TVLVQLPNVAEFYITFFALLRLGV 103
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 46.8 bits (111), Expect = 7e-06
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 53 LTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+TYK+L E V K A L + V+KG+R+AI LE +V + A A++ +
Sbjct: 28 MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECI 79
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 45.8 bits (108), Expect = 1e-05
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 40/192 (20%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
+T+ ++ + + VL+++G+ GDRV + LP ++V +LAC G + + +
Sbjct: 31 VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELH 90
Query: 113 GDDM------------------------STV--PAN--SERER------------KLKLR 132
DD S V A SE R L
Sbjct: 91 RDDHALAARNTEPALVVTSDALRDRFQPSRVAEAAELMSEAARVAPGGYEPMGGDALAYA 150
Query: 133 KVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPL 192
+G+TG PK +H L + + P D C+A + + G V+ PL
Sbjct: 151 TYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPL 210
Query: 193 ANGATSVIVSLP 204
A G ++VI S P
Sbjct: 211 ATGGSAVINSAP 222
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 45.6 bits (109), Expect = 2e-05
Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 31/131 (23%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV----- 103
Y ++YK++ E + L++ G++ GD++ I+ E ++T AC V
Sbjct: 2 PYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLY 61
Query: 104 ---------HSIVVSKCSG-----------DDMSTVPANSERERKLKLRKVV------TG 137
+ + ++ S +++ + ++ + + +G
Sbjct: 62 DTLGEEAIEYILNETEISIVFCDAVKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSG 121
Query: 138 STGKPKGVLHT 148
+TG PKGV+ T
Sbjct: 122 TTGNPKGVMLT 132
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 45.1 bits (107), Expect = 2e-05
Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 39/186 (20%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSG 113
T++ L E A LK++G++ G RVA+ +E+V+ + AC +GA +++ ++ +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 114 DDMSTV--------------------------------PANSERERKLKLRKVVT----- 136
++ + + + ++ T
Sbjct: 61 NERTNQLEDLDVQLLLTDSLLEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTS 120
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TGKPK V HT + +A K + D + + + I+G + +++ L GA
Sbjct: 121 GTTGKPKAVPHTFRNH-YASAVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGA 178
Query: 197 TSVIVS 202
T IV
Sbjct: 179 TLRIVD 184
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 45.2 bits (107), Expect = 2e-05
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
R TY +L V + A VL+ +G G+R+A+ + +V ACAR+GA++ + +
Sbjct: 22 RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81
Query: 112 SGDDMSTVPANSE 124
S ++ + ++E
Sbjct: 82 SASELDALLQDAE 94
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 45.2 bits (107), Expect = 2e-05
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 52 RLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSK 110
TY+ LL+ + A+VL GV G+RV + +V LA + GA+ +
Sbjct: 60 TWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPL 119
Query: 111 CSGDDMSTVPANSERERKL-----------KLRKVVTGSTGKPKGVLHTTGGYLLYAATT 159
+++T+ + L L +G+TG PKG +H L
Sbjct: 120 LRAKELTTIVDKARITHALCDKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAF 179
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205
++V P D++ + + + G +V PL GA++V++
Sbjct: 180 PRHVLQPTPDDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQAT 225
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 44.9 bits (107), Expect = 3e-05
Identities = 31/151 (20%), Positives = 45/151 (29%), Gaps = 52/151 (34%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-- 103
D D+ LTY +L A L++ G GDRV + P L+ V C GA+
Sbjct: 17 DDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAV 75
Query: 104 ---------------HSIVVSK------CSGDDMSTVPANSERERKLKLRKVVT------ 136
+I+ + ++ + A L L +
Sbjct: 76 PAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAAL 135
Query: 137 ----------------------GSTGKPKGV 145
GSTG PKGV
Sbjct: 136 AAADWRPPPPDPDDIAFLQYTSGSTGAPKGV 166
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 44.6 bits (106), Expect = 3e-05
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+TY +L E A L+S+G+ KG RVAI +P VL+ V + A R G V
Sbjct: 49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYV 99
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 44.1 bits (105), Expect = 4e-05
Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 39/138 (28%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC---------- 97
D LTY +L A L++ GV GD VA+ +P E +V +L
Sbjct: 8 DGAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPI 67
Query: 98 ------ARIGAVHS-----IVVSKCSGDDMS-------TVPANSERERKLKLRKVVT--- 136
R A+ + V++ + E V
Sbjct: 68 DPDQPAERRAAILARAGARAVLTDPGLAQPEEAPDLLVVADDAAAAESPAPPPPRVDPDD 127
Query: 137 --------GSTGKPKGVL 146
GSTG+PKGV+
Sbjct: 128 LAYVIFTSGSTGEPKGVM 145
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 44.1 bits (104), Expect = 4e-05
Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 56/211 (26%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRV----------------AIY---LPMVL 88
DD S L+Y +L +V + L+ GV++ +RV AI +P+ L
Sbjct: 26 DDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85
Query: 89 EIVVT------MLACARIGAV---------------------HSIVVSKCSGDDMS---T 118
++T ML +R V H +VV + ++
Sbjct: 86 NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAEL 145
Query: 119 VPANSERERKLKLRK-------VVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDI 171
+ SE+ + + +GSTG PKGV+HT A + + D+
Sbjct: 146 LATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDV 205
Query: 172 YWCTADVGWITGHTYVVYGPLANGATSVIVS 202
+ A + + G + P++ GAT+V++
Sbjct: 206 VFSAAKLFFAYGLGNALTFPMSVGATTVLMG 236
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 44.0 bits (104), Expect = 5e-05
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ TY L + AN L +KG++ GDRVA LP E + LAC ++GAV
Sbjct: 48 ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAV 100
Score = 30.1 bits (68), Expect = 1.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 136 TGSTGKPKGVLHTTGGYLL----YAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGP 191
+G+ G PKGV+ T L Y A + D++ A +G TG + V P
Sbjct: 196 SGTEGLPKGVMLTHNNILASERAYCARLN-----LTWQDVFMMPAPLGHATGFLHGVTAP 250
Query: 192 LANGATSVI 200
GA SV+
Sbjct: 251 FLIGARSVL 259
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 44.0 bits (104), Expect = 6e-05
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+D + T+ L + K AN K+ G+ KGD V + L E +MLA +IGA+
Sbjct: 40 DDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAI 98
Score = 32.4 bits (74), Expect = 0.24
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGW 180
+G+TG PK V H Y L T KY + K G ++ AD GW
Sbjct: 194 SGTTGMPKMVEHDHT-YPLGHIVTAKYWQNVKEGGLHLTVADTGW 237
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 43.4 bits (103), Expect = 7e-05
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 39/137 (28%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV--------- 103
+T+ +L E V A L + GV+KGDRVA+ + +E+++ + A ++GAV
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 104 ---------HSIVV---------SKCSGD---DMSTVPANSERERKLK----LRKVVT-- 136
+ V +K + + + E +++ L +V T
Sbjct: 88 REELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEEAEIQEEFDLDEVATIM 147
Query: 137 ---GSTGKPKGVLHTTG 150
G+TGKPKGV+ T G
Sbjct: 148 YTSGTTGKPKGVIQTYG 164
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 43.4 bits (102), Expect = 9e-05
Identities = 41/189 (21%), Positives = 61/189 (32%), Gaps = 41/189 (21%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
+LTY +L + A +L S GV G+ VAI LE+VV +LA + GA
Sbjct: 252 QLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLY 311
Query: 104 ------------HSIVVSKCSG-------------DDMS-TVPANSERERKLKLRKVVT- 136
++ + DD +P + L +
Sbjct: 312 PAERLAYILEDSRPTLLLTQAHLRVDDVGLPGLALDDALSEIPDTDPIPQALLGDALAYI 371
Query: 137 ----GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPL 192
GSTG+PKGV F D A + + ++G L
Sbjct: 372 IYTSGSTGQPKGVRIEHRALANLLNDAGAR-FGLDADDRVLALASLSFDASVFE-IFGAL 429
Query: 193 ANGATSVIV 201
GA V+
Sbjct: 430 LEGARLVLA 438
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 43.0 bits (102), Expect = 1e-04
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
D+ LTY +L E+ A L + GV+ GD VA+ V+ + A ++GA
Sbjct: 70 DERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGA 124
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 42.6 bits (101), Expect = 1e-04
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 51 SRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
++Y++LLEE + A L+ + GV+KGDRV +Y+ + V+ A R AV
Sbjct: 34 RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAV 87
Score = 31.9 bits (73), Expect = 0.40
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 137 GSTGKPKGVLHT--------TGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVV 188
G+TG PKG +HT G L +T P + + +TG + +
Sbjct: 200 GTTGVPKGCMHTHRTVMANAVGSVLWSNST---------PESVVLAVLPLFHVTGMVHSM 250
Query: 189 YGPLANGATSVIVS 202
P+ GAT V++
Sbjct: 251 NAPIYAGATVVLMP 264
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 42.8 bits (101), Expect = 1e-04
Identities = 45/203 (22%), Positives = 68/203 (33%), Gaps = 64/203 (31%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH------- 104
LTY +L + A+ L + GV V I + LE+VV +LA + G +
Sbjct: 1599 ELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEY 1658
Query: 105 ----------------------------------SIVVSK----CSGDDMSTVPANSERE 126
S+V+ + G S PA +
Sbjct: 1659 PRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQEDDWLEGYSDSN-PAVNLAP 1717
Query: 127 RKLKLRKVVTGSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHT 185
+ L +GSTG+PKG + G + AT Y ADV + +
Sbjct: 1718 QNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQL---------SAADV-VLQFTS 1767
Query: 186 YV-------VYGPLANGATSVIV 201
+ ++ PL NGA VI
Sbjct: 1768 FAFDVSVWELFWPLINGARLVIA 1790
Score = 40.9 bits (96), Expect = 7e-04
Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 60/202 (29%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH------- 104
L+Y +L + + A+VL + GV V I + +E+VV +LA + G +
Sbjct: 537 VLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEY 596
Query: 105 --------------SIVVSKCSGDDMSTVPAN------SERERKLKLRKVV--------- 135
+++++ VPA E L
Sbjct: 597 PQDRLAYMLDDSGVRLLLTQSHLLAQLPVPAGLRSLCLDEPADLLCGYSGHNPEVALDPD 656
Query: 136 --------TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY- 186
+GSTG+PKGV + G Y + AD + T+
Sbjct: 657 NLAYVIYTSGSTGQPKGVAISHGALANYVCVIAER---------LQLAADDSMLMVSTFA 707
Query: 187 ------VVYGPLANGATSVIVS 202
++G LA+GAT ++
Sbjct: 708 FDLGVTELFGALASGATLHLLP 729
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 42.1 bits (99), Expect = 2e-04
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R TY + A+ L + GV++GDRVA+ +E + L CA +GA+
Sbjct: 46 RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI 97
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 41.5 bits (98), Expect = 4e-04
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 50 YSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ +TY++L E V A+ L S G+ GDRVAI+ E + LA +GAV
Sbjct: 43 WEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAV 96
Score = 31.5 bits (72), Expect = 0.49
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTH-KYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
G+TG PKGV+ T LL + + PGD + I + L G
Sbjct: 201 GTTGTPKGVMLTHRN-LLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGG 259
Query: 196 ATSVIVS 202
T +
Sbjct: 260 VTVLFKE 266
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 40.9 bits (97), Expect = 4e-04
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG+PKGV+ T L A D PGD+Y A + G +++ LA G
Sbjct: 11 GTTGRPKGVMLTHRNLLANAVNAL-AGVDLSPGDVYLLAAPLYHAAGGLFLLPA-LAAGG 68
Query: 197 TSVI 200
T V+
Sbjct: 69 TVVL 72
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 40.7 bits (96), Expect = 5e-04
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
R TY++ + + A+ L G+ KGD VA+ P ++ GAV
Sbjct: 29 RYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVL 81
Score = 28.8 bits (65), Expect = 3.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 137 GSTGKPKGVLHT-TGGYLLYAATTHKYVFDYKPGDIYWCTADV----GWITGHTYVVYGP 191
G+TG PKGV++T G YL A + + +Y T + GW +
Sbjct: 177 GTTGNPKGVVYTHRGAYL--NALGNVIEWGMPDRPVYLWTLPMFHCNGW--CFP---WAI 229
Query: 192 LANGATSV 199
A G T V
Sbjct: 230 TAVGGTHV 237
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 40.3 bits (95), Expect = 9e-04
Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 44/134 (32%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC--ARIGA 102
++Y++L K L+ G++ GD V + + + AC I
Sbjct: 8 EGDKKEKFISYEQLFTRALKVLGALQKLGIKPGDEVVFQIEDNEDFIYVFWACILGGIIP 67
Query: 103 VHSIVVSKCSGDDMSTVPANSERERKLKLRKVV--------------------------- 135
V N++ E KLKL +V
Sbjct: 68 VP-------------LSYGNTD-EHKLKLLRVWNILNNPFLITDRDSLLSLPDDIAFIQF 113
Query: 136 -TGSTGKPKGVLHT 148
+GSTG+PKGV+ T
Sbjct: 114 SSGSTGEPKGVILT 127
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles. This family
includes fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA
ester. The fatty acyl-CoA synthetases are responsible
for fatty acid degradation as well as physiological
regulation of cellular functions via the production of
fatty acyl-CoA esters. The fatty acyl-CoA synthetase
from Thermus thermophiles in this family was shown
catalyzing the long-chain fatty acid, myristoyl acid,
while another member in this family, the AlkK protein
identified from Pseudomonas oleovorans, targets medium
chain fatty acids. This family also includes
uncharacterized FACS proteins.
Length = 517
Score = 39.5 bits (93), Expect = 0.001
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVA 81
R TY V + AN L+S GV+ GDRVA
Sbjct: 25 RYTYADFYRRVRRLANALESLGVKPGDRVA 54
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 39.6 bits (93), Expect = 0.001
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 64 KCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ A L G+++GD V + LP E V+ L +R GAV
Sbjct: 62 RVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV 101
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 39.1 bits (92), Expect = 0.002
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 42 AAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101
A P +TY +L + A+ L++ G+++GD VAI L E A R G
Sbjct: 2 AVIMAPSG-EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSG 60
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 39.0 bits (91), Expect = 0.002
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGD 78
+WQ + +L P + + +Y++L + A L G+++GD
Sbjct: 19 YWQDKPLTDILRDQAARYPDAIAIICGN----RQWSYRELDQRADNLAAGLTKLGIKQGD 74
Query: 79 RVAIYLPMVLEIVVTMLACARIGAV 103
+ LP + E + A ++G
Sbjct: 75 TAVVQLPNIAEFYIVFFALLKLGVA 99
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 38.1 bits (89), Expect = 0.004
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 66 ANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
A L ++GV+KGDR+ ++ ++ +M A R+GAV
Sbjct: 46 AAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV 83
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 37.5 bits (87), Expect = 0.007
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97
Y LTYK++ + + + ++S+GV GDR IY E ++ M AC
Sbjct: 74 PYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 37.1 bits (86), Expect = 0.008
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98
TYK++ EEV + + L++ G + G RV IY + +V M ACA
Sbjct: 78 TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACA 122
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 36.4 bits (84), Expect = 0.012
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
D ++Y+ L V A L G+ GDRVA+ + E VV +LA +R V
Sbjct: 39 ADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV 94
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 36.7 bits (85), Expect = 0.013
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 38 MKPGAA-----GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVV 92
M+P A GN T+++L + V A L +GV GDRV I + E V
Sbjct: 29 MQPDAPALRFLGNT------TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVE 82
Query: 93 TMLACARIGAV 103
++LA +GA+
Sbjct: 83 SVLAANMLGAI 93
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 36.5 bits (84), Expect = 0.013
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
D S L Y++L+ EV A L+++ V +G RV + E +++LACA++GA+ +
Sbjct: 37 DGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMA 96
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 36.2 bits (84), Expect = 0.016
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
+TY++L E + A++ +S G+++GD VAI++ L + A R G ++ V S
Sbjct: 24 VVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL 83
Query: 112 SGDDMSTVPANSE 124
+ + + + +S
Sbjct: 84 TPAEAAYIVDDSG 96
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 36.2 bits (83), Expect = 0.016
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
+T+ ++V + AN L+ GV+KGDRVAI LP + V+ G IVV
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGG---IVV---- 102
Query: 113 GDDMSTVPANSERERKLKL 131
T P +ERE + +L
Sbjct: 103 ----QTNPLYTERELEYQL 117
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 35.8 bits (83), Expect = 0.028
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 45 NDPDDYSRL-TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
DP +R TYK++ E A+ L G+++GD V IY +++VV ++ + GA
Sbjct: 262 LDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGAT 321
Query: 104 HSIV 107
S++
Sbjct: 322 FSVI 325
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 34.9 bits (81), Expect = 0.037
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R T+ + + A+ L +G+ +GD VA+ LP + +V GAV
Sbjct: 43 RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAV 94
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 35.0 bits (81), Expect = 0.037
Identities = 39/211 (18%), Positives = 68/211 (32%), Gaps = 73/211 (34%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTM----LACARIGAV 103
+RLTY +L + + + ++ G+ GD VA+ E+++ + LA R A+
Sbjct: 33 LGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTAL 92
Query: 104 HSI--------VVSKCSGDDMSTVPANSERERKL-------KLRKVVT------------ 136
H + V+ +G V ER L L+ V+T
Sbjct: 93 HPLGSLDDHAYVLED-AGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLA 151
Query: 137 --------------------------GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGD 170
G+TGKPKGV+ T A
Sbjct: 152 AAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQ------------- 198
Query: 171 IYWCTADVGWITGHTYVVYGPLANGATSVIV 201
A+ W +++ PL++ + +
Sbjct: 199 --IQLAEWEWPADPRFLMCTPLSHAGGAFFL 227
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 35.0 bits (80), Expect = 0.038
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 47 PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97
P Y TY+++ + V K N L+S GV+ + IY E +++M AC
Sbjct: 74 PGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 34.2 bits (79), Expect = 0.064
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
L+Y++L +EV A L++ GV+ R+A+ L ++ V+ LAC + G V +
Sbjct: 2 SLSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPI 54
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 34.5 bits (79), Expect = 0.064
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
D +LTY +L + A+ L ++GV V I + E++V +LA + G +
Sbjct: 4573 DEEKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAY 4628
Score = 31.5 bits (71), Expect = 0.61
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
L+Y +L + A+ L+++GV RVAI E+VV +LA + G
Sbjct: 2028 HLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGG 2078
Score = 29.2 bits (65), Expect = 2.9
Identities = 34/176 (19%), Positives = 55/176 (31%), Gaps = 26/176 (14%)
Query: 42 AAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQ-------KGDRVAIYLP---MVLEIV 91
G PD + ++ LE V +LK+ G +R+A L L +
Sbjct: 3101 ERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLS 3160
Query: 92 VTMLACARIGAVHSIVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTGG 151
+ L V + + + + PA L +GSTGKPKGV
Sbjct: 3161 QSHLRLPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSA 3220
Query: 152 YLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV-------VYGPLANGATSVI 200
+ Y + T+ ++ PL +GA V+
Sbjct: 3221 LSNHLCWM---------QQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVL 3267
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 33.8 bits (78), Expect = 0.087
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ +Y++L + A L+ +G++ GD + L V E +T A ++G
Sbjct: 48 QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVA 99
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 34.0 bits (78), Expect = 0.11
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
L+Y +L + A L+ +GV RV + L LE+VV +LA + G +
Sbjct: 2214 LSYAELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAY 2265
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 33.4 bits (77), Expect = 0.11
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
L Y+ L A L + G++ GDRVA+ + V AC G V
Sbjct: 50 LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLV 100
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 33.5 bits (77), Expect = 0.13
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 53 LTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+T++KL E A L++ G++KGDRVA+ +P +L+ + + R G +
Sbjct: 49 MTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMI 100
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 33.2 bits (76), Expect = 0.14
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99
+Y +TY ++ E VC A+ L + G K +RVAI+ E ++ + C R
Sbjct: 103 EYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFR 153
Score = 31.2 bits (71), Expect = 0.69
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIY 172
+GSTG PKGV+ T G + A V D+Y
Sbjct: 259 SGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVY 295
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
Length = 499
Score = 33.3 bits (76), Expect = 0.14
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TG+PK + T L A+ ++ D +PGD+ ++GW+ G +++Y NG
Sbjct: 128 SGTTGEPKAIPWTHLSPLRCASDGWAHM-DIQPGDVVCWPTNLGWMMG-PWLLYSAFLNG 185
Query: 196 AT 197
AT
Sbjct: 186 AT 187
>gnl|CDD|234106 TIGR03089, TIGR03089, TIGR03089 family protein. This protein
family is found, so far, only in the Actinobacteria
(Streptomyces, Mycobacterium, Corynebacterium, Nocardia,
Propionibacterium, etc.) and never more than one to a
genome. Members show twilight-level sequence similarity
to family of AMP-binding enzymes described by pfam00501.
Length = 227
Score = 32.8 bits (75), Expect = 0.15
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 28 VLTPLPGCTPMKPGAAGNDPDDYSR--LTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYL 84
+L+PL P P D R L+ L V K AN+L+ + + G RVA+ L
Sbjct: 1 LLSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDL 60
Query: 85 PMVLEIVVTMLACARIGAV 103
P + V +LA G
Sbjct: 61 PAHWQTAVWLLAAWSTGVE 79
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 33.1 bits (76), Expect = 0.16
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R ++ +L + + A L + GV+ GD VA+ + A R+GA
Sbjct: 11 RRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAY 62
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 32.8 bits (75), Expect = 0.21
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
LTYK E VCK AN L K K +AI L +E + A G
Sbjct: 26 VLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMAGWT 76
>gnl|CDD|233262 TIGR01078, arcA, arginine deiminase. Arginine deiminase is the
first enzyme of the arginine deiminase pathway of
arginine degradation [Energy metabolism, Amino acids and
amines].
Length = 405
Score = 32.0 bits (73), Expect = 0.29
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 80 VAIYLP-----MVLEIVVTMLACARIGAVHSIVVSKCSGDDMSTVPANSE---RERKLKL 131
+AI +P M L+ V TM+ + V VV N+E E K L
Sbjct: 255 LAINIPKNRALMHLDTVFTMVDYDKF-TVFPEVVDVLKFSIYDLPYGNNEPIIVEEKAPL 313
Query: 132 RKVVTGSTGKPKGVLHTTGGYLLYAA 157
+V+ + G K L TGG A
Sbjct: 314 EEVLASALGVKKLRLIPTGGGDSVEA 339
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 32.2 bits (73), Expect = 0.35
Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 47/145 (32%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV--------- 103
++Y + + + + A +L ++G+ +GD VA+ + + A + +GAV
Sbjct: 28 ISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLA 87
Query: 104 -----------------------------HSIVVSKCSGDDMSTV---------PANSER 125
+V + S P +
Sbjct: 88 ADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAAQADSRRLAQGGLEIPPQAAVA 147
Query: 126 ERKLKLRKVVTGSTGKPKGVLHTTG 150
L +G+T +PKGV+H+ G
Sbjct: 148 PTDLVRLMYTSGTTDRPKGVMHSYG 172
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 31.8 bits (73), Expect = 0.37
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGD 170
G+TG+PKGV+ + G + A T + P D
Sbjct: 147 GTTGQPKGVMLSFGAFAFAAQGTIEI-IGLTPND 179
Score = 29.2 bits (66), Expect = 3.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
T+ ++ ++ + A L+S G++ GDR+AI E ++ LA G V
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 31.9 bits (72), Expect = 0.42
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105
TY +++ + + A L+S G++KG V + LP V E + L G V S
Sbjct: 57 TYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFS 108
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 31.8 bits (73), Expect = 0.42
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 41/135 (30%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG------AVHS 105
+LTY +L E+ A + S + + ++ M E++ T L + G V S
Sbjct: 27 KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSS 86
Query: 106 --------IVVSKCS-----------GDDMSTVPANSERERKLKLRKVV----------- 135
I V+K S + + + ++
Sbjct: 87 PAERIEMIIEVAKPSLIIATEELPLEILGIPVITLDELKDIFATGNPYDFDHAVKGDDNY 146
Query: 136 -----TGSTGKPKGV 145
+G+TGKPKGV
Sbjct: 147 YIIFTSGTTGKPKGV 161
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 31.3 bits (72), Expect = 0.46
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG+PKG + T +L + GD + + G V L GA
Sbjct: 12 GTTGRPKGAMLTHRN-VLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVLASLTAGA 70
Query: 197 TSVIVS 202
T V++
Sbjct: 71 TLVLME 76
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 31.7 bits (72), Expect = 0.48
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LTY++L E+ + A ++ + + K + +Y M ++V L + G H+ +
Sbjct: 25 ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSG--HAYI---- 78
Query: 112 SGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTG 150
V + ER + + P+ V+HT
Sbjct: 79 ------PVDTSIPSERIEMIIEAA-----GPELVIHTAE 106
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 31.5 bits (72), Expect = 0.50
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLA 193
G+TG PKGV+HT G + T + + D+ + TY Y PLA
Sbjct: 274 GTTGDPKGVMHTHG-----SLTAGILALEDRLNDLIGPPEE-----DETYCSYLPLA 320
Score = 28.4 bits (64), Expect = 4.7
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97
+TY +L E + L G+ KG VAIY E + ++
Sbjct: 122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGI 166
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2). Dip2 proteins
show sequence similarity to other members of the
adenylate forming enzyme family, including insect
luciferase, acetyl CoA ligases and the adenylation
domain of nonribosomal peptide synthetases (NRPS).
However, its function may have diverged from other
members of the superfamily. In mouse embryo, Dip2
homolog A plays an important role in the development of
both vertebrate and invertebrate nervous systems. Dip2A
appears to regulate cell growth and the arrangement of
cells in organs. Biochemically, Dip2A functions as a
receptor of FSTL1, an extracellular glycoprotein, and
may play a role as a cardiovascular protective agent.
Length = 556
Score = 31.4 bits (71), Expect = 0.53
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 51 SRLTYKKLLEEVCKCAN-VLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
LTY KL K A +LK G++ GDRV + P + + C G +
Sbjct: 8 YTLTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCLYAGLI 61
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 46 DPDDYS-RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96
DP + LT+ +L A L+ G GDR I P LE +V L
Sbjct: 28 DPAGVAETLTWSQLYRRTLNVAEELRRHGS-TGDRAVILAPQGLEYIVAFLG 78
>gnl|CDD|181417 PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydrogenase;
Provisional.
Length = 260
Score = 30.1 bits (68), Expect = 1.1
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 203 LPGEIYW-CTADVGWITGHTYVVYG 226
L G + C+ W+TG T VV G
Sbjct: 231 LAGACLFLCSEKASWLTGQTIVVDG 255
Score = 30.1 bits (68), Expect = 1.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 174 CTADVGWITGHTYVVYG 190
C+ W+TG T VV G
Sbjct: 239 CSEKASWLTGQTIVVDG 255
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 30.3 bits (69), Expect = 1.2
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 136 TGSTGKPKGVLHTTGGYL--LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLA 193
+GSTG PKGV++T G + + A + + +PG+I T + + ++GP A
Sbjct: 183 SGSTGTPKGVVYTHGMFEAQIEAL---REDYGIEPGEIDLPTFPL-------FALFGP-A 231
Query: 194 NGATSVI 200
G TSVI
Sbjct: 232 LGMTSVI 238
Score = 29.9 bits (68), Expect = 1.7
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 40 PGAAGNDPD-DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98
PG G D Y L++ +L A+ L + G+ +G R + + LE A
Sbjct: 28 PGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALF 87
Query: 99 RIGAV 103
+ GAV
Sbjct: 88 KAGAV 92
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 30.0 bits (68), Expect = 1.4
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIV------------VT 93
+PD R T+ ++ E + A L + GV GD VA+ +EI +T
Sbjct: 23 EPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82
Query: 94 ML 95
ML
Sbjct: 83 ML 84
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 29.7 bits (67), Expect = 1.9
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 47 PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99
+Y +TY + + L G+ KG V +Y E ++ AC+
Sbjct: 73 VGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSA 125
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 29.7 bits (67), Expect = 2.0
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 53 LTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LTY +L + A L+ ++ GDR+A+ LP VL+ V + R G IVV
Sbjct: 50 LTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGL---IVV--- 103
Query: 112 SGDDMSTVPANSERE 126
+T P + RE
Sbjct: 104 -----NTNPLYTARE 113
>gnl|CDD|223050 PHA03335, PHA03335, hypothetical protein; Provisional.
Length = 385
Score = 29.6 bits (66), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 206 EIYWCTADVGWITG--HTYVVYGPLANGATSVIVSETLK 242
EI +CT D G I+ V+ PL+ G +++++ K
Sbjct: 315 EILYCTDDHGLISSCCKASVLKAPLSIGKVALVINTPFK 353
Score = 27.7 bits (61), Expect = 7.8
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 170 DIYWCTADVGWITG--HTYVVYGPLANGATSVIVSLP 204
+I +CT D G I+ V+ PL+ G +++++ P
Sbjct: 315 EILYCTDDHGLISSCCKASVLKAPLSIGKVALVINTP 351
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 29.3 bits (66), Expect = 2.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVA 81
R TY ++ + K + L G++ GDRVA
Sbjct: 39 RTTYAQIHDRALKVSQALDRDGIKLGDRVA 68
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 29.1 bits (66), Expect = 2.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 137 GSTGKPKGVLHT 148
GSTG PK V++T
Sbjct: 174 GSTGLPKAVINT 185
Score = 27.6 bits (62), Expect = 9.0
Identities = 14/61 (22%), Positives = 23/61 (37%)
Query: 42 AAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101
A ++ R+TY + L +V A L G+ + I +E + LA G
Sbjct: 15 AERRGGGEWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAG 74
Query: 102 A 102
Sbjct: 75 V 75
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 28.9 bits (65), Expect = 3.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVA 81
D R TY+ + A L + GV+ GDRV
Sbjct: 36 DIHRYTYRDCERRAKQLAQALAALGVEPGDRVG 68
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 28.8 bits (65), Expect = 3.9
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 50 YSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS 109
+Y +LLEE + L++ G++ GD V + L + V AC G V V
Sbjct: 37 EEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV-- 94
Query: 110 KCSGDDMSTVPANSE----RERKLK 130
VP + KL+
Sbjct: 95 --------AVPPTYDEPNAAVAKLR 111
Score = 27.6 bits (62), Expect = 8.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 137 GSTGKPKGVLHT 148
GSTG PK V+ T
Sbjct: 177 GSTGVPKCVVLT 188
>gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase.
Length = 614
Score = 28.7 bits (64), Expect = 4.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 115 DMSTVPANSERERKLKLRKVVTGSTGKPKGVL--HTTGGYLLYAATTHKYVFDYKPGDIY 172
D++ V +NSE++R + + + + GS + GVL H G + L+ A V ++
Sbjct: 471 DITYVDSNSEKKRPIMIHRAILGSLERFFGVLIEHYAGDFPLWLAPVQARVLPVTDNELE 530
Query: 173 WC 174
+C
Sbjct: 531 YC 532
>gnl|CDD|235278 PRK04311, PRK04311, selenocysteine synthase; Provisional.
Length = 464
Score = 28.6 bits (65), Expect = 4.1
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 85 PMVLEIVVTMLACARIGAVHSIVVSKCSGDDMSTVPANSERERKLKLRKVV--TGSTGKP 142
+V++ V +L AR G + + + V A + LR V+ TG
Sbjct: 32 TLVVDAVREVLDEAREGIRNGQTLPLDLEALAAEVEARLAARARPSLRPVINATGV---- 87
Query: 143 KGVLHT 148
VLHT
Sbjct: 88 --VLHT 91
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 28.4 bits (64), Expect = 5.1
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG+PKGV T LL +A P D + I G + L G
Sbjct: 12 GTTGRPKGVPLTHKN-LLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVSLLATLLAGG 70
Query: 197 TSVI 200
+ V
Sbjct: 71 SVVC 74
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 28.0 bits (63), Expect = 5.7
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG PK H+ + A + PGD+ + + G PLA GA
Sbjct: 12 GTTGAPKLARHSHRN-EVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAPLARGA 70
Query: 197 TSVIVS 202
T V+ +
Sbjct: 71 TVVLPT 76
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 28.3 bits (64), Expect = 5.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 137 GSTGKPKGVLHT 148
GSTG PK V++T
Sbjct: 219 GSTGLPKAVINT 230
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 28.4 bits (64), Expect = 6.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLK---SKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101
DP + LTY+KLL A VL K G+ V + LP VT A G
Sbjct: 652 EDPVN-GPLTYRKLLTG----AFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAG 706
Query: 102 AV 103
V
Sbjct: 707 RV 708
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 28.2 bits (63), Expect = 6.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 51 SRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ T+ + A+ L + G+ RV + E + + A A +GAV
Sbjct: 37 EQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAV 90
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 28.0 bits (63), Expect = 6.1
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 137 GSTGKPKGVLHTTGGYL--LYAATTHKYVFDYKPGDIY 172
GS G PKGV+ + L + V D D+
Sbjct: 155 GSEGLPKGVVLSHRNLLANIDQIAA---VIDLNTEDVL 189
>gnl|CDD|226063 COG3533, COG3533, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 589
Score = 27.8 bits (62), Expect = 7.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 75 QKGDRVAIYLPMVLEIVVTMLACARIGAV 103
Q GDRV + LPM + I +GA+
Sbjct: 465 QAGDRVELMLPMPVRIYANPDVRHDVGAI 493
>gnl|CDD|222067 pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This
family is closely related to Beta-lactamase, pfam00144,
the serine beta-lactamase-like superfamily, which
contains the distantly related pfam00905 and PF00768
D-alanyl-D-alanine carboxypeptidase.
Length = 197
Score = 27.2 bits (61), Expect = 7.3
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 131 LRKVVTGSTGKPKG---VLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWIT--GHT 185
L + G P+ +L+ T L A +K G +Y DVG + G
Sbjct: 133 LEALYQGELLSPESLDILLNQTFRDRLPAGLPDGVRVAHKTGTLYGVRHDVGIVYADGRP 192
Query: 186 YVV 188
YV+
Sbjct: 193 YVL 195
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 27.8 bits (62), Expect = 7.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 74 VQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
GDRVAI P ++ V A + G +
Sbjct: 89 AGPGDRVAILAPQGIDYVAGFFAAIKAGTI 118
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 27.3 bits (60), Expect = 10.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101
++Y++L ++ A VL G++ GD VA+ E +V + A R G
Sbjct: 25 VSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSG 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.452
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,159,732
Number of extensions: 1310895
Number of successful extensions: 1559
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 254
Length of query: 281
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 185
Effective length of database: 6,679,618
Effective search space: 1235729330
Effective search space used: 1235729330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)