RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9113
(281 letters)
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 168 bits (429), Expect = 3e-48
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTG PKGV H+T GYLL A T +Y FD D+++ D+GWITGHTYVVYGPL G
Sbjct: 272 GSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGC 331
Query: 197 TSVI 200
+++
Sbjct: 332 ATLV 335
Score = 125 bits (315), Expect = 2e-32
Identities = 37/65 (56%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLK-SKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
G++P +TYK+LLEEVC+ A VL S GV+KGD VA+Y+PMV E ++T+LA +RIGA
Sbjct: 105 GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 164
Query: 103 VHSIV 107
+HS+V
Sbjct: 165 IHSVV 169
Score = 95.0 bits (237), Expect = 4e-22
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPG-CTPMKPGAA 43
W+WY IG + IVDT+WQTE+G H++TPL G TPMKPG+A
Sbjct: 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSA 444
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 168 bits (427), Expect = 5e-48
Identities = 53/64 (82%), Positives = 61/64 (95%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGVLHTTGGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA GA
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGA 325
Query: 197 TSVI 200
T+++
Sbjct: 326 TTLM 329
Score = 128 bits (325), Expect = 8e-34
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D ++Y++L +VC+ AN L G++KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIV 107
HS++
Sbjct: 159 HSVI 162
Score = 98.8 bits (247), Expect = 2e-23
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 166 bits (422), Expect = 1e-47
Identities = 38/220 (17%), Positives = 60/220 (27%), Gaps = 65/220 (29%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
+D + T+K L K AN G+ KGD V + L + ML ++GA+
Sbjct: 79 DDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIA 138
Query: 105 S---------------------IVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPK 143
++V D V + L+K G +
Sbjct: 139 VPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVG-GDVLE 197
Query: 144 GVLH----------------------------------TTG---------GYLLYAATTH 160
G + T G Y L T
Sbjct: 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTA 257
Query: 161 KYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
KY + + +++ AD GW +YG G +
Sbjct: 258 KYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297
Score = 56.8 bits (138), Expect = 2e-09
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
+ + G +++ F QTET + P KPG+ G
Sbjct: 358 FNRFLEFTG---IKLMEGFGQTET-VVTIATFPW-MEPKPGSIG 396
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 155 bits (395), Expect = 7e-44
Identities = 45/220 (20%), Positives = 72/220 (32%), Gaps = 63/220 (28%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
N +++L E + ANVL G+Q+GDRVA+ LP V E + +L C R G +
Sbjct: 66 NGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLI 125
Query: 104 HS---------------------IVVSKCSGDDMSTVPANSERERKLKLRKVVTG----- 137
+V + + V + L+++ +V+
Sbjct: 126 FMPGTIQMKSTDILYRLQMSKAKAIV--AGDEVIQEVDTVASECPSLRIKLLVSEKSCDG 183
Query: 138 ---------------------------------STGKPKGVLHTTGGYLLYAATTHKYVF 164
++G PK H+ L A
Sbjct: 184 WLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD-AGWT 242
Query: 165 DYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204
+ DI W +D GWI + P A GA + + LP
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP 282
Score = 48.4 bits (116), Expect = 1e-06
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
+ + G I +++ QTETG + +KPG G
Sbjct: 339 LENWRAQTG---LDIRESYGQTETGLTCMVSK--TMKIKPGYMG 377
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 102 bits (256), Expect = 9e-25
Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 64/212 (30%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
TY +L E + A+ L++ GV +R+ + + + + V L G V
Sbjct: 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLL 107
Query: 104 ----------HS---IVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLH--- 147
HS V+ SG + V E + +V+ +
Sbjct: 108 TPADYVYMLTHSHARAVI--ASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFE 165
Query: 148 ----------------------------TTG---------GYLLY-AATTHKYVFDYKPG 169
+TG L + A K +
Sbjct: 166 ELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEN 225
Query: 170 DIYWCTADVGWITGHTYVVYGPLANGATSVIV 201
D+ + A + + G + PL+ GAT++++
Sbjct: 226 DVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257
Score = 28.7 bits (65), Expect = 2.6
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 13 CSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
C I+D TE H+ ++ G G
Sbjct: 326 CEILDGIGSTEM-LHIFLSNRA-GAVEYGTTG 355
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 71.8 bits (177), Expect = 2e-14
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
P RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV
Sbjct: 23 VPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 71.5 bits (176), Expect = 3e-14
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+++Y +L+ + ANVL ++G+Q GDRVA +E +V LA R G V
Sbjct: 24 AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79
Score = 36.0 bits (84), Expect = 0.010
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG+ KG + + L + T + + P D+ + G L
Sbjct: 165 GTTGRSKGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223
Query: 197 TSVIV 201
+ + +
Sbjct: 224 SMIFL 228
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 70.7 bits (174), Expect = 5e-14
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
R+TY ++ +CA+VL + G+ KGDRVA+ +P +E A++GAV
Sbjct: 43 RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVA 95
Score = 42.2 bits (100), Expect = 1e-04
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG PKGV+HT + AA++ D + D + + T V G
Sbjct: 180 GTTGHPKGVVHTHES-VHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSAMRGV 237
Query: 197 TSVIV 201
T + +
Sbjct: 238 TLISM 242
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 69.9 bits (172), Expect = 8e-14
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
RLT++ L + A+ L GV GDRVAI E++ + A A IGA+
Sbjct: 31 RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83
Score = 41.8 bits (99), Expect = 2e-04
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+P+G L + G LL A ++ + D+ + +TG ++ G
Sbjct: 170 AVGGRPRGALISQGN-LLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLG-LMLTLQQAGG 227
Query: 197 TSVIV 201
SVI
Sbjct: 228 ASVIA 232
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 68.7 bits (169), Expect = 2e-13
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+L+Y +L A L KG+ KGD + LP V E + A + G V
Sbjct: 55 QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 68.8 bits (169), Expect = 2e-13
Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 63/218 (28%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI------- 100
D +L+Y++L + A L+ +G++ G+ + L V E+ +T A ++
Sbjct: 46 DGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLA 105
Query: 101 ----------------GAVHSIVVSKCSGDDMSTVPANSERERKLKLRKVVT-------- 136
I + + N+ +R V
Sbjct: 106 LFSHQRSELNAYASQIEPALLIADRQHALFSGDDF-LNTFVTEHSSIRVVQLLNDSGEHN 164
Query: 137 -----------------------------GSTGKPKGVLHTTGGYLLYAATTHKYVFDYK 167
G+TG PK + T Y Y+ + +
Sbjct: 165 LQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDY-YYSVRRSVEICQFT 223
Query: 168 PGDIYWCTADVGWITGHTYV-VYGPLANGATSVIVSLP 204
Y C + G G T V+ + P
Sbjct: 224 QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADP 261
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 67.9 bits (167), Expect = 4e-13
Identities = 43/251 (17%), Positives = 71/251 (28%), Gaps = 77/251 (30%)
Query: 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPD------DYSRLTYKKLLEEVCKCANVLKSK 72
W ET G +L A D + +Y++L + A +
Sbjct: 21 CWAGETFGDLLR----------DRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKL 70
Query: 73 GVQKGDRVAIYLPMVLEIVVTMLACARI-----------------------GAVHSIVVS 109
G+Q+ DRV + LP + E + A R+ A I+
Sbjct: 71 GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD 130
Query: 110 KCSGDDMSTVPANSERERKLKLRKVVT--------------------------------- 136
SG D ++ A + + L+ ++
Sbjct: 131 AYSGFDYRSL-ARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQL 189
Query: 137 --GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITG-HTYVVYGPLA 193
GSTG K + T Y +Y+ V +Y + + V G L
Sbjct: 190 SGGSTGLSKLIPRTHDDY-IYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248
Query: 194 NGATSVIVSLP 204
G V+ P
Sbjct: 249 AGGRVVLSPSP 259
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 67.7 bits (166), Expect = 5e-13
Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 51/195 (26%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH--- 104
LTY +L A + RVA++ +E V ++A G
Sbjct: 44 FGERSLTYAELAAAAGATAG-----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98
Query: 105 ------------------SIVVSKCSGDDMSTVPANSERERKLKLRKVVTGS-------- 138
S+V+ + +P ++ + G+
Sbjct: 99 NPKSGDKELAHILSDSAPSLVL----APPDAELPPALGALERVDVDVRARGAVPEDGADD 154
Query: 139 ------------TGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY 186
TG PKG + L + + D+ + + G
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRA-LATTLDALADAWQWTGEDVLVQGLPLFHVHGLVL 213
Query: 187 VVYGPLANGATSVIV 201
+ GPL G + +
Sbjct: 214 GILGPLRRGGSVRHL 228
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 66.5 bits (163), Expect = 1e-12
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ + ++ E K A+ + KGV+KG+ V + +P ++ V+T+ A R+ A
Sbjct: 52 SMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAAT 103
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 64.6 bits (158), Expect = 6e-12
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+TY + E + A +K G+ R+ + L+ + +L IG
Sbjct: 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVA 101
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 64.5 bits (158), Expect = 6e-12
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+Y + LE+ C L++ G+ R+A+ E + ++A IG
Sbjct: 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 63.4 bits (155), Expect = 1e-11
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
TY+ L E A L + RV +Y+ ++ ++ + AC
Sbjct: 26 SYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIE 74
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 62.2 bits (152), Expect = 3e-11
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ + TY + + A+ L G+Q+GD + ++LP E V+ L + GA+
Sbjct: 43 NGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 62.3 bits (152), Expect = 4e-11
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
TY + + A GV + D V + LP E V++ LA + GA
Sbjct: 88 VYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT-------- 139
Query: 112 SGDDMSTV-PANSERE 126
+ P + E
Sbjct: 140 ----ATAANPFFTPAE 151
Score = 28.1 bits (63), Expect = 3.8
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGW-------ITGHTYVVY 189
G+TG PKGV+ T G L + D + ++Y+ + DV I ++
Sbjct: 235 GTTGLPKGVMLTHKG--LVTSVAQ--QVDGENPNLYFHSDDVILCVLPMFHIYALNSIML 290
Query: 190 GPLANGATSVIV 201
L GA +I+
Sbjct: 291 CGLRVGAAILIM 302
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 55.8 bits (135), Expect = 4e-09
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ + +TY++L + A L+++G + GDRV + L ++ L C G +
Sbjct: 34 NKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
Score = 33.1 bits (76), Expect = 0.11
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIY--W--CTADVGWITGHTYVVYGPL 192
GST PKGV+ + LL F I W D+G I P+
Sbjct: 177 GSTMHPKGVMVSHHN-LLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCIL----TPI 231
Query: 193 ANGATSVIVS 202
G ++++S
Sbjct: 232 YGGIQAIMMS 241
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 55.4 bits (134), Expect = 6e-09
Identities = 18/59 (30%), Positives = 23/59 (38%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+L Y+ L A L S ++KGDRVA+ E V AC G V
Sbjct: 42 RRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLV 100
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 47.8 bits (114), Expect = 2e-06
Identities = 37/221 (16%), Positives = 56/221 (25%), Gaps = 69/221 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC------ 97
+ LT+ +L A L G GDRV I P LE VV L
Sbjct: 50 QDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRI 108
Query: 98 -------------ARIGAV-----HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT--- 136
R +V ++ + + V + R ++
Sbjct: 109 AVPLSVPQGGVTDERSDSVLSDSSPVAIL--TTSSAVDDVVQHVARRPGESPPSIIEVDL 166
Query: 137 --------------------------GSTGKPKGVLHT-----TGGYLLYAATTHKYVFD 165
GST P GV+ + L +
Sbjct: 167 LDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGI 226
Query: 166 YKPGDIY--W--CTADVGWITGHTYVVYGPLANGATSVIVS 202
P W D+G + G P+ G +V+ S
Sbjct: 227 PPPNSALVSWLPFYHDMGLVIGIC----APILGGYPAVLTS 263
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 47.6 bits (114), Expect = 2e-06
Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 60/201 (29%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
L+Y++L EE + A L+ G KG VA+Y LE+V+
Sbjct: 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKL 548
Query: 94 -------MLACARIGAV--HSIVVSKCSGDDMSTVPANSERERKLK-----LRKVVT--- 136
MLA + + H + + + + + + + + +
Sbjct: 549 PEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPND 608
Query: 137 --------GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV- 187
G+TGKPKG + T F D +++ Y
Sbjct: 609 PAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFS--DQDT--------FLSVSNYAF 658
Query: 188 ------VYGPLANGATSVIVS 202
Y + N A +I
Sbjct: 659 DAFTFDFYASMLNAARLIIAD 679
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 45.2 bits (108), Expect = 1e-05
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-HSI 106
+ R TY ++ + + L++ GV GDRVA + A +GAV H+
Sbjct: 44 EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102
Score = 28.6 bits (65), Expect = 2.5
Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 136 TGSTGKPKGVLHT-TGGYLLYAATTHKYVFDYKPGDIYWCTADV------GWITGHTYVV 188
TG+TG PKGV+++ L A + D+ V W Y
Sbjct: 185 TGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPV--VPMFHVNAW--CLPYAA 240
Query: 189 YGPLANGATSVIVSLPG 205
GA V LPG
Sbjct: 241 ---TLVGAKQV---LPG 251
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 45.2 bits (108), Expect = 1e-05
Identities = 27/195 (13%), Positives = 49/195 (25%), Gaps = 56/195 (28%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
+ Y++LL+ + ++ L Q G + +Y E +
Sbjct: 52 SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQ 111
Query: 94 -------MLACARIGAV-----HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT----- 136
+ + + + +PA R
Sbjct: 112 PAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPVRHLPAAPASV----ARPCFAADQIA 167
Query: 137 ------GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGD-IYWCTA---DVGWITGHTY 186
G+TG+PK + T G F P + D T
Sbjct: 168 YINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFA--PQMRFLVNSPLSFDAA-----TL 220
Query: 187 VVYGPLANGATSVIV 201
++G L NG V+
Sbjct: 221 EIWGALLNGGCCVLN 235
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 43.7 bits (104), Expect = 4e-05
Identities = 28/200 (14%), Positives = 52/200 (26%), Gaps = 57/200 (28%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
R TY +L + A + S + V ++ +++ T
Sbjct: 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHS 88
Query: 94 -------MLACARIGAV-----HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT----- 136
++ A+ + + + S +S + + E + V
Sbjct: 89 APERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKGDDNY 148
Query: 137 ------GSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV-- 187
G+TG+PKGV + L FD + Y
Sbjct: 149 YIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ--------MLAQPPYSFD 200
Query: 188 -----VYGPLANGATSVIVS 202
LA G T +
Sbjct: 201 LSVMYWAPTLALGGTLFALP 220
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 43.6 bits (104), Expect = 4e-05
Identities = 27/202 (13%), Positives = 55/202 (27%), Gaps = 61/202 (30%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
++TYK+L E+ A+ + S+ + +Y M E+++
Sbjct: 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSI 85
Query: 94 -------MLACARIGAV---HSIVVSKCSGD----DMSTVPANSERERKLKLRKVVT--- 136
+ + + ++ V+ D + + V
Sbjct: 86 PADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDE 145
Query: 137 --------GSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187
GSTG PKGV T + + G + ++ +
Sbjct: 146 NFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQ--TGQV--------FLNQAPFS 195
Query: 188 -------VYGPLANGATSVIVS 202
+Y L G T +
Sbjct: 196 FDLSVMDIYPSLVTGGTLWAID 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 46/271 (16%), Positives = 74/271 (27%), Gaps = 107/271 (39%)
Query: 44 GNDPDDY----SRL--TYKKLLEEVCK-CANVLKSKGVQKGDRVAIYLPMVLEIV----- 91
GN DDY L TY L+ ++ K A L D ++ L I+
Sbjct: 164 GN-TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-TQGLNILEWLEN 221
Query: 92 ------VTMLACAR-----IG---AVHSIVVSKCSGDDMSTVPANSERERKLKLRKVVTG 137
L IG H +V +K G P LR + G
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT----PGE--------LRSYLKG 269
Query: 138 STGKPKGVL--------HTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY--- 186
+TG +G++ + + + +F + +G Y
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF--------F----IGVRCYEAYPNT 317
Query: 187 -----VVYGPLANGAT------SVI---------------VSLPGEIYWCTADVGWITGH 220
++ L N S+ LP
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG------------KQ 365
Query: 221 TYVVYGPLANGATSVIVS---ETLKMLNTNF 248
+ L NGA +++VS ++L LN
Sbjct: 366 VEIS---LVNGAKNLVVSGPPQSLYGLNLTL 393
Score = 32.7 bits (74), Expect = 0.13
Identities = 37/232 (15%), Positives = 63/232 (27%), Gaps = 97/232 (41%)
Query: 103 VHSIVVSKCSGDDMSTV------------------PANSERERKLKLRKVVTGSTGKPKG 144
+H++ +D + V P + + L R V G+
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQ---- 155
Query: 145 VLHTT-GG------YL-----LY---------------------AATTHKYVFDYKPG-D 170
L GG Y LY TT + G +
Sbjct: 156 -LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 171 IYWCTADVGWITG------HTYVVYGPLANGATSVIVSLPGEI-------YWCTADVGWI 217
I + W+ Y++ P +S P I Y TA +
Sbjct: 215 I------LEWLENPSNTPDKDYLLSIP---------ISCPL-IGVIQLAHYVVTAKL--- 255
Query: 218 TGHTYVVYGPLANGAT----SVIVSETLKMLNT--NFFCILYT-ISSLMWAG 262
G T GAT ++ + + ++ +FF + I+ L + G
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Score = 30.4 bits (68), Expect = 0.84
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 17/60 (28%)
Query: 40 PG----AAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95
AAG+ + L+ V NVL +QK D + + + LE V L
Sbjct: 1849 ENQQYVAAGD----------LRALDTVT---NVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 40.7 bits (96), Expect = 4e-04
Identities = 28/215 (13%), Positives = 49/215 (22%), Gaps = 55/215 (25%)
Query: 41 GAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------- 93
G G+ TYKKL E + AN++ + G +A+ L L
Sbjct: 44 GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKS 102
Query: 94 ------------------MLACARIGAV--HSIVVSKCSG--------DDMSTVPANSER 125
+L +R + N
Sbjct: 103 GNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLST 162
Query: 126 ERKLKLRKVVT-----------GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWC 174
+ + GSTG PKGV + L + +
Sbjct: 163 QDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHN-LSSFSDAWGKLIGNVAPKSLEL 221
Query: 175 TADVGWITGHTYV-------VYGPLANGATSVIVS 202
++ + ++ G +V
Sbjct: 222 GGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGE 256
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 39.8 bits (94), Expect = 7e-04
Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 61/202 (30%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
+LTY +L + + A + KG+ K V I + +++ +
Sbjct: 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEY 123
Query: 94 -------MLACARIGAV--HSIVVSKCSGDDMSTV-----PANSERERKLKLRKVVT--- 136
+L ++ + +V + + L
Sbjct: 124 PKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTD 183
Query: 137 --------GSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187
G+TG PKG + G L + D +
Sbjct: 184 LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVT--EKDR--------IGQFASIS 233
Query: 188 -------VYGPLANGATSVIVS 202
++ L GA+ I+
Sbjct: 234 FDASVWEMFMALLTGASLYIIL 255
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 39.4 bits (93), Expect = 9e-04
Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 60/201 (29%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGD-RVAIYLPMVLEIVVT----------------- 93
LTY++L E+ + A ++ + + + +Y M ++V+
Sbjct: 26 SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLS 85
Query: 94 --------MLACARIGAV--HSIVVSKCSGDDMSTVPANSE---RERKLKLRKVVT---- 136
++ + + + + G + TV A + + V
Sbjct: 86 IPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHET 145
Query: 137 -------GSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV- 187
GSTG PKGV + + G I ++ +
Sbjct: 146 FYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS--GGKI--------FLNQAPFSF 195
Query: 188 ------VYGPLANGATSVIVS 202
+Y L +G T V+
Sbjct: 196 DLSVMDLYPCLQSGGTLHCVT 216
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.67
Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 63/212 (29%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKG-DRVAIYLPMVL--EIVVTMLACARIGAVH 104
D++ + KL + NVL+ +K DR++++ P I+++++ I +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 105 SIVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTGGYLLYAATT----- 159
+VV+K S V E++ K + + YL
Sbjct: 405 MVVVNKLH--KYSLV------EKQPKESTI----------SIP--SIYLELKVKLENEYA 444
Query: 160 -HKYVFD-YK-------------PGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204
H+ + D Y D Y+ ++++ + L N ++L
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYF----------YSHIGHH-LKNIEHPERMTLF 493
Query: 205 GEIYWCTADVGWI------TGHTYVVYGPLAN 230
++ D ++ + G + N
Sbjct: 494 RMVF---LDFRFLEQKIRHDSTAWNASGSILN 522
Score = 29.4 bits (65), Expect = 1.4
Identities = 17/115 (14%), Positives = 28/115 (24%), Gaps = 53/115 (46%)
Query: 108 VSKCSGDDMSTVPANSERERK-LKLRKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDY 166
+ D+ N R + LKLR+ L K V
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA-------------------LLELRPAKNV--- 153
Query: 167 KPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS----------LPGEIYWCT 211
++ G L +G T V + + +I+W
Sbjct: 154 --------------------LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 28.2 bits (62), Expect = 3.4
Identities = 12/71 (16%), Positives = 16/71 (22%), Gaps = 3/71 (4%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDY---KPGDIYWCTADVGWITGHTYVVYGPLA 193
G+TG PK V+ + G+ I G
Sbjct: 101 GTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRL 160
Query: 194 NGATSVIVSLP 204
G I P
Sbjct: 161 GGMFFSIDIDP 171
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate
metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Length = 200
Score = 26.8 bits (60), Expect = 7.6
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 65 CANVLKSKGVQKGDRVAIYLPMVLEI 90
++ + K + + I L M E+
Sbjct: 40 VFSLYEQKEWAEAKTIGITLSMENEV 65
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.6 bits (58), Expect = 7.9
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 163 VFDYKPGDIYWCTADVGWITGHTYVVYGP 191
V + GD+ C G + V
Sbjct: 35 VERFSEGDVV-CA-LCGLVLSDKLVDTRS 61
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
ATP-binding, binding, magnesium, nucleotide-binding;
HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A*
3hy6_A
Length = 203
Score = 26.5 bits (59), Expect = 8.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 65 CANVLKSKGVQKGDRVAIYLPMVLEI 90
V+ QK R++I+L M EI
Sbjct: 37 SQKVIAHSEYQKSKRISIFLSMQDEI 62
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; NMR {Aquifex aeolicus} SCOP:
c.124.1.6
Length = 194
Score = 26.4 bits (59), Expect = 9.2
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 65 CANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDM 116
+N+ +K +VA+Y P+ E V + +++ K G+++
Sbjct: 30 ISNLKSLPEFKKSKKVALYCPIKGE-VDLTPLFPEVLKEKELILPKVEGNEI 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.452
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,489,002
Number of extensions: 270803
Number of successful extensions: 713
Number of sequences better than 10.0: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 89
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)