RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9113
(281 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 110 bits (276), Expect = 7e-28
Identities = 77/233 (33%), Positives = 106/233 (45%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRV---------------------AI 82
G+D ++Y++L +VC+ AN L G++KGD V A+
Sbjct: 95 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 154
Query: 83 YLPM-----------------------------------VLEIVVTMLACARIGAVHSIV 107
+ + + + V L + +V ++
Sbjct: 155 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 214
Query: 108 VSKCSGDDMSTVPANSERERKLKLRKVVT------------------GSTGKPKGVLHTT 149
V K +G D+ R L + GSTGKPKGVLHTT
Sbjct: 215 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 274
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA GAT+++
Sbjct: 275 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 327
Score = 49.3 bits (117), Expect = 2e-07
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 391 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSAT 434
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 88.4 bits (218), Expect = 2e-20
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 38/240 (15%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
G++P +TYK+LLEEVC+ A VL GV+KGD VA+Y+PMV E ++T+LA +RIGA
Sbjct: 82 GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 141
Query: 103 VHSIVVSKCSGDDMSTVPANSE------------RERKLKLRKVVTGSTGKPKGVLH--- 147
+HS+V + S + + + + + ++ +++V + + GV H
Sbjct: 142 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV 201
Query: 148 ---TTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVY--------------- 189
T + + A K + +++Y
Sbjct: 202 YRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHST 261
Query: 190 -GPLANGATSVIVSL---PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLN 245
G L ++ + ++++ D+GWITGHTYVVYGPL G +++ T N
Sbjct: 262 AGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN 321
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 78.8 bits (193), Expect = 4e-17
Identities = 32/252 (12%), Positives = 69/252 (27%), Gaps = 18/252 (7%)
Query: 36 TPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95
K + + R TY ++ + + L++ GV GDRVA +
Sbjct: 24 FGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 83
Query: 96 ACARIGAVHSIVVSKCSGDDMSTVPANSE-------RERKLKLRKVVTGSTGKPKGVLHT 148
A +GAV + S +++ + ++E + + V+
Sbjct: 84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMD 143
Query: 149 TGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHT-------YVVYGPLANGATSV-- 199
Y A + P + A T T + L + +
Sbjct: 144 EKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL 203
Query: 200 --IVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISS 257
+L + + + Y GA V+ L + ++
Sbjct: 204 VDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTF 263
Query: 258 LMWAGSLDIRMW 269
++ + +
Sbjct: 264 TAGVPTVWLALA 275
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 77.8 bits (190), Expect = 8e-17
Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 6/233 (2%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105
P RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV +
Sbjct: 23 VPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPA 82
Query: 106 IVVSKCSGDDMSTVPANSERERKLKL--RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV 163
++ + +++ + E + R+V G G L+ + Y
Sbjct: 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYG 142
Query: 164 FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYV 223
+ A +I + P A + + + + VG G V
Sbjct: 143 PPIEDPQR--EPAQPAFIFYTSGTTGLPK--AAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 224 VYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRMWCMVLWPM 276
V G + + + L + ++ + A L + L+
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFAT 251
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 74.6 bits (182), Expect = 9e-16
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 37 PMKPGA-AGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95
+ PG A D +TY + E + A +K G+ R+ + L+ + +L
Sbjct: 31 ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 90
Query: 96 ACARIGAVHSIV 107
IG +
Sbjct: 91 GALFIGVAVAPA 102
Score = 27.9 bits (61), Expect = 1.7
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 2/114 (1%)
Query: 112 SGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVF--DYKPG 169
++ VP + +R++ + L +GSTG PKGV + + +F P
Sbjct: 172 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 231
Query: 170 DIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYV 223
G + + ++ E++ + I V
Sbjct: 232 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLV 285
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 72.6 bits (177), Expect = 5e-15
Identities = 14/77 (18%), Positives = 36/77 (46%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
+ +LTY +L + + A + KG+ K V I + +++ + +LA + G + +
Sbjct: 44 CENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 103
Query: 108 VSKCSGDDMSTVPANSE 124
+ + + + +S+
Sbjct: 104 DIEYPKERIQYILDDSQ 120
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 72.3 bits (176), Expect = 6e-15
Identities = 16/77 (20%), Positives = 34/77 (44%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
+ +Y++L + A + G+Q+ DRV + LP + E + A R+GA+
Sbjct: 46 CGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105
Query: 108 VSKCSGDDMSTVPANSE 124
+ +++ +E
Sbjct: 106 LPSHRSSEITYFCEFAE 122
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 211
Score = 27.2 bits (60), Expect = 1.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 119 VPANSERERKLKLRKVVTGSTGKPK 143
VP S +RK + + KPK
Sbjct: 3 VPRGSHMDRKTEFIECTNAFNEKPK 27
>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
562]}
Length = 720
Score = 26.9 bits (59), Expect = 3.6
Identities = 6/45 (13%), Positives = 11/45 (24%)
Query: 97 CARIGAVHSIVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGK 141
G + G M +P K ++ G+
Sbjct: 487 NVLSGLFCGLRGKAQIGKGMWAMPDLMADMYSQKGDQLRAGANTA 531
>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus
[TaxId: 274]}
Length = 406
Score = 26.2 bits (57), Expect = 4.6
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 54 TYKKLLEEVCKCANVL--KSKGVQKGDRVAIY-----LPMVLEIVVTMLACARIGAVHSI 106
+K+ LE K A + ++KG V + V + R GA
Sbjct: 1 AFKRNLE---KLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAE---KAYREGASLFT 54
Query: 107 V 107
V
Sbjct: 55 V 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.452
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,129,076
Number of extensions: 52150
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 20
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)