Query psy9114
Match_columns 98
No_of_seqs 110 out of 1016
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:18:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0233 Frr Ribosome recycling 100.0 1E-34 2.2E-39 214.1 5.1 88 10-98 19-106 (187)
2 PRK00083 frr ribosome recyclin 100.0 4E-34 8.6E-39 210.4 6.1 88 10-98 17-104 (185)
3 TIGR00496 frr ribosome recycli 100.0 4.8E-34 1E-38 208.6 6.0 88 10-98 8-95 (176)
4 cd00520 RRF Ribosome recycling 100.0 2.2E-33 4.9E-38 205.0 5.8 88 10-98 13-100 (179)
5 PF01765 RRF: Ribosome recycli 100.0 2.9E-31 6.2E-36 190.9 5.0 86 12-98 1-86 (165)
6 KOG4759|consensus 99.9 1.4E-27 3E-32 183.4 4.0 88 11-98 97-184 (263)
7 PRK05412 putative nucleotide-b 79.3 1.8 3.8E-05 31.8 2.4 32 63-95 100-131 (161)
8 PF04461 DUF520: Protein of un 65.9 2.1 4.6E-05 31.3 0.2 32 63-95 100-131 (160)
9 cd04887 ACT_MalLac-Enz ACT_Mal 48.6 29 0.00062 20.4 3.1 28 57-84 1-28 (74)
10 PF13291 ACT_4: ACT domain; PD 47.9 22 0.00047 21.6 2.5 27 57-83 8-34 (80)
11 COG1666 Uncharacterized protei 46.7 18 0.00038 26.7 2.2 45 50-95 86-135 (165)
12 PF12334 rOmpB: Rickettsia out 44.7 34 0.00074 26.0 3.5 32 31-62 116-147 (217)
13 cd04878 ACT_AHAS N-terminal AC 36.6 77 0.0017 17.6 3.6 29 56-84 1-29 (72)
14 cd01793 Fubi Fubi ubiquitin-li 34.8 98 0.0021 18.6 4.0 29 49-78 2-30 (74)
15 PF13349 DUF4097: Domain of un 34.6 1.1E+02 0.0024 20.6 4.7 56 28-98 73-128 (166)
16 cd04903 ACT_LSD C-terminal ACT 33.7 73 0.0016 17.7 3.2 28 57-84 1-28 (71)
17 cd04879 ACT_3PGDH-like ACT_3PG 32.3 78 0.0017 17.5 3.1 27 58-84 2-28 (71)
18 cd04886 ACT_ThrD-II-like C-ter 30.2 75 0.0016 17.7 2.8 26 59-84 2-27 (73)
19 cd04899 ACT_ACR-UUR-like_2 C-t 30.0 91 0.002 17.9 3.2 27 57-83 2-28 (70)
20 cd04888 ACT_PheB-BS C-terminal 29.8 1.1E+02 0.0023 17.8 3.5 28 57-84 2-29 (76)
21 TIGR02398 gluc_glyc_Psyn gluco 29.0 23 0.00049 29.8 0.5 37 42-78 412-448 (487)
22 cd04873 ACT_UUR-ACR-like ACT d 28.8 1E+02 0.0023 17.3 3.3 27 57-83 2-28 (70)
23 cd04877 ACT_TyrR N-terminal AC 28.1 1E+02 0.0022 18.4 3.3 27 57-83 2-28 (74)
24 TIGR02573 LcrG_PcrG type III s 27.8 25 0.00054 23.5 0.5 22 66-87 5-38 (90)
25 PF14873 BNR_assoc_N: N-termin 26.8 66 0.0014 22.2 2.5 23 30-53 41-63 (137)
26 PF13732 DUF4162: Domain of un 26.2 1.6E+02 0.0034 17.8 5.7 50 31-81 13-65 (84)
27 PF07216 LcrG: LcrG protein; 26.0 27 0.00057 23.5 0.3 24 64-87 6-41 (93)
28 PF00254 FKBP_C: FKBP-type pep 25.9 1.6E+02 0.0036 17.9 4.6 55 24-80 2-56 (94)
29 cd04927 ACT_ACR-like_2 Second 24.7 1.3E+02 0.0027 18.4 3.3 28 57-84 2-29 (76)
30 PRK10117 trehalose-6-phosphate 24.7 28 0.00062 29.3 0.4 37 42-78 383-419 (474)
31 cd04900 ACT_UUR-like_1 ACT dom 23.9 1.6E+02 0.0035 17.4 3.6 28 57-84 3-30 (73)
32 PRK09579 multidrug efflux prot 23.6 1.2E+02 0.0025 27.7 4.0 32 23-54 753-785 (1017)
33 TIGR00915 2A0602 The (Largely 23.3 99 0.0021 28.2 3.5 30 24-53 779-809 (1044)
34 COG4747 ACT domain-containing 23.3 1.3E+02 0.0029 21.5 3.5 38 47-84 61-98 (142)
35 PF04036 DUF372: Domain of unk 22.6 73 0.0016 18.1 1.7 18 61-79 21-38 (38)
36 cd04902 ACT_3PGDH-xct C-termin 22.4 1.6E+02 0.0034 16.8 3.3 27 58-84 2-28 (73)
37 COG2098 Uncharacterized protei 21.1 82 0.0018 22.0 2.0 35 58-94 29-63 (116)
38 PF14085 DUF4265: Domain of un 21.1 2.7E+02 0.0058 18.6 7.1 64 31-98 30-95 (117)
39 PF02482 Ribosomal_S30AE: Sigm 20.9 1E+02 0.0023 19.0 2.4 70 4-78 10-82 (97)
40 cd04926 ACT_ACR_4 C-terminal 20.5 1.8E+02 0.0038 17.4 3.3 27 57-83 3-29 (72)
41 PF10761 DUF2590: Protein of u 20.3 79 0.0017 21.6 1.8 22 61-82 20-41 (102)
42 cd04925 ACT_ACR_2 ACT domain-c 20.1 2E+02 0.0043 17.3 3.5 26 58-83 3-28 (74)
43 PF00982 Glyco_transf_20: Glyc 20.1 40 0.00086 28.2 0.3 34 44-77 405-439 (474)
No 1
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-34 Score=214.14 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=86.1
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-++|+++|+++|||||||++||+|.|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|||||||.+||
T Consensus 19 ~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~D-ks~~~~IekaI~~snLglnP~~dG 97 (187)
T COG0233 19 LEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFD-KSMVKAIEKAILASNLGLNPNNDG 97 (187)
T ss_pred HHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCc-cchHHHHHHHHHHcCCCCCcCcCC
Confidence 3689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 98 ~~IRv~~P~ 106 (187)
T COG0233 98 NVIRVPLPP 106 (187)
T ss_pred CeEEecCCC
Confidence 999999996
No 2
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=100.00 E-value=4e-34 Score=210.36 Aligned_cols=88 Identities=24% Similarity=0.369 Sum_probs=86.1
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-+||+++|+++||||+||++||+|+|+|||+++||++||+|+++++++|+|+||| ++++++|++||++||||+||+.||
T Consensus 17 i~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D-~~~i~~I~kAI~~s~lgl~P~~dg 95 (185)
T PRK00083 17 VEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWD-KSMLKAIEKAIRASDLGLNPSNDG 95 (185)
T ss_pred HHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCC-HhHHHHHHHHHHHCCCCCCcccCC
Confidence 3689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 96 ~~Iri~iP~ 104 (185)
T PRK00083 96 TVIRLPIPP 104 (185)
T ss_pred CEEEecCCC
Confidence 999999995
No 3
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=100.00 E-value=4.8e-34 Score=208.56 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=86.3
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-+||+++|+++|+||+||++||+|+|+|||+++||+++|||+++++++|+|+||| ++++++|++||++||||+||+.||
T Consensus 8 i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D-~~~~~~I~kAI~~s~lglnP~~dg 86 (176)
T TIGR00496 8 IQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFD-KSNINAIEKAIQRSDLGLNPNNDG 86 (176)
T ss_pred HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCC-hhhHHHHHHHHHHCCCCCCcccCC
Confidence 4789999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 87 ~~Iri~iP~ 95 (176)
T TIGR00496 87 SVIRVNFPP 95 (176)
T ss_pred CEEEecCCC
Confidence 999999996
No 4
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=99.98 E-value=2.2e-33 Score=205.01 Aligned_cols=88 Identities=25% Similarity=0.377 Sum_probs=86.0
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-+||+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|+|+||| ++++++|++||++||||+||++||
T Consensus 13 i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D-~~~i~~I~kAI~~s~l~l~P~~dg 91 (179)
T cd00520 13 LEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFD-KSAIKAIEKAILNSDLGLNPNNDG 91 (179)
T ss_pred HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecc-hhhHHHHHHHHHHCCCCCCcCcCC
Confidence 3689999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 92 ~~iri~iP~ 100 (179)
T cd00520 92 AVIRVNLPP 100 (179)
T ss_pred CEEEecCCC
Confidence 999999996
No 5
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=99.97 E-value=2.9e-31 Score=190.91 Aligned_cols=86 Identities=36% Similarity=0.568 Sum_probs=82.8
Q ss_pred ccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCCCE
Q psy9114 12 HSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTT 91 (98)
Q Consensus 12 ~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg~~ 91 (98)
||+++|.++|+||+||++||+|+|+|||+.+||+++|||+++++++|+|+||| ++++++|++||++|+||+||+.||..
T Consensus 1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d-~~~i~~I~kAI~~s~l~l~p~~d~~~ 79 (165)
T PF01765_consen 1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYD-PSLIKAIEKAIQKSNLNLNPQNDGNT 79 (165)
T ss_dssp HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESS-TTHHHHHHHHHHHTTSSSEEEEETTE
T ss_pred ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecc-ccchHHHHHHHHHCCCCCCcccCCcE
Confidence 78999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred EEEcCCC
Q psy9114 92 IIIPIPK 98 (98)
Q Consensus 92 Iri~iP~ 98 (98)
|+|+||+
T Consensus 80 i~v~iP~ 86 (165)
T PF01765_consen 80 IRVPIPP 86 (165)
T ss_dssp EEEE--S
T ss_pred EEEECCC
Confidence 9999996
No 6
>KOG4759|consensus
Probab=99.94 E-value=1.4e-27 Score=183.40 Aligned_cols=88 Identities=28% Similarity=0.439 Sum_probs=86.3
Q ss_pred cccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCCC
Q psy9114 11 RHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGT 90 (98)
Q Consensus 11 ~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg~ 90 (98)
+.++++|+++++||.+|++||+|.|++||.+.||++||+||.+++++|+|+|||||.++++|+|||.+|+|||||+.||.
T Consensus 97 e~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn~~d~p~~ikai~kAI~~S~lnltP~~dg~ 176 (263)
T KOG4759|consen 97 EALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILINPFDFPVDIKAILKAIEASGLNLTPNLDGT 176 (263)
T ss_pred HHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEecccCchHHHHHHHHHHhCCCCCCcCCCCc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q psy9114 91 TIIIPIPK 98 (98)
Q Consensus 91 ~Iri~iP~ 98 (98)
+|+|++|+
T Consensus 177 ~l~vsiP~ 184 (263)
T KOG4759|consen 177 VLRVSIPP 184 (263)
T ss_pred EEEecCCC
Confidence 99999996
No 7
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=79.27 E-value=1.8 Score=31.82 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=29.6
Q ss_pred ccCCCchHHHHHHHHhCCCCCCccCCCCEEEEc
Q psy9114 63 SSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIP 95 (98)
Q Consensus 63 ~D~~~~ik~I~kAI~~S~LglnP~~dg~~Iri~ 95 (98)
-| ....|.|.|+|+++.|-++.+..|..+||.
T Consensus 100 I~-~e~AKkIvK~IKd~klKVqa~IQGd~vRVt 131 (161)
T PRK05412 100 ID-QELAKKIVKLIKDSKLKVQAQIQGDQVRVT 131 (161)
T ss_pred cC-HHHHHHHHHHHHhcCCceeEEecCcEEEEe
Confidence 36 789999999999999999999999999985
No 8
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=65.85 E-value=2.1 Score=31.33 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=26.5
Q ss_pred ccCCCchHHHHHHHHhCCCCCCccCCCCEEEEc
Q psy9114 63 SSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIP 95 (98)
Q Consensus 63 ~D~~~~ik~I~kAI~~S~LglnP~~dg~~Iri~ 95 (98)
-| ....|.|.|+|+++.|-++.+..|..+||.
T Consensus 100 I~-~d~AKkIvK~IKd~klKVqa~IQgd~vRVt 131 (160)
T PF04461_consen 100 ID-QDTAKKIVKLIKDSKLKVQAQIQGDQVRVT 131 (160)
T ss_dssp ---HHHHHHHHHHHHHH--SEEEEEETTEEEEE
T ss_pred cC-HHHHHHHHHHHHhcCCceeEEecCcEEEEe
Confidence 36 779999999999999999999999999985
No 9
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.62 E-value=29 Score=20.39 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=23.2
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
+|.|..+|.+..+..|..+|.+.+.++.
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~ 28 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIG 28 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEE
Confidence 3678889988899999999988876653
No 10
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=47.90 E-value=22 Score=21.58 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=21.6
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNM 83 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgl 83 (98)
.|.|..+|.+.++..|.++|.+.+.++
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~nI 34 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGVNI 34 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSSEE
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCCCe
Confidence 578888998999999999999988654
No 11
>COG1666 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.72 E-value=18 Score=26.68 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=34.7
Q ss_pred eeecCCcEEEEEe-----ccCCCchHHHHHHHHhCCCCCCccCCCCEEEEc
Q psy9114 50 ISRKNPKTLIINM-----SSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIP 95 (98)
Q Consensus 50 Isv~~~~~l~I~~-----~D~~~~ik~I~kAI~~S~LglnP~~dg~~Iri~ 95 (98)
....++.+.-... -| ..+.|-|.|-|++|.|-++-+..|..+||.
T Consensus 86 ~~~~sG~~~~~~~klkqGI~-~e~AKKI~KlIkDsklKVqaqIQGdqVRVt 135 (165)
T COG1666 86 EEVASGKTVRQEAKLKQGIE-SENAKKIVKLIKDSKLKVQAQIQGDQVRVT 135 (165)
T ss_pred hhhhcCCeEEEeehHhhhhh-HHHHHHHHHHHHhcccceeeeeccceEEEe
Confidence 3344455554444 25 678899999999999999999999999985
No 12
>PF12334 rOmpB: Rickettsia outer membrane protein B ; InterPro: IPR022095 This domain family is found in bacteria, and is approximately 220 amino acids in length. The family is found in association with PF03797 from PFAM. This family is the middle region of one of the outer membrane proteins of Rickettsia which is involved in adhesion to eukaryotic cells for uptake.
Probab=44.66 E-value=34 Score=26.03 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=28.8
Q ss_pred ceeEEEEcCCcccccceeeeeecCCcEEEEEe
Q psy9114 31 ESLKVEFEDDEYVLQDLAQISRKNPKTLIINM 62 (98)
Q Consensus 31 d~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~ 62 (98)
|.|.|...++.-|.+.|+||++.++-.++|+=
T Consensus 116 ~~ItVTlnkqa~~v~~LkqitvSG~gnVvine 147 (217)
T PF12334_consen 116 DPITVTLNKQAGPVNALKQITVSGPGNVVINE 147 (217)
T ss_pred CCeEEEEcCCcCcccceeEEEEeCCCcEEEec
Confidence 56889999999999999999999999998873
No 13
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=36.55 E-value=77 Score=17.62 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=23.8
Q ss_pred cEEEEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 56 KTLIINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 56 ~~l~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
++|.|...|.+..+..+...+.+.+.++.
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~ 29 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIE 29 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEE
Confidence 46888888878899999999988877653
No 14
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=34.77 E-value=98 Score=18.61 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=22.1
Q ss_pred eeeecCCcEEEEEeccCCCchHHHHHHHHh
Q psy9114 49 QISRKNPKTLIINMSSFPQLIPVTMKALVD 78 (98)
Q Consensus 49 qIsv~~~~~l~I~~~D~~~~ik~I~kAI~~ 78 (98)
+|.+++.++..+.+.. -..+..+...|.+
T Consensus 2 qi~vk~~~~~~l~v~~-~~tV~~lK~~i~~ 30 (74)
T cd01793 2 QLFVRAQNTHTLEVTG-QETVSDIKAHVAG 30 (74)
T ss_pred EEEEECCCEEEEEECC-cCcHHHHHHHHHh
Confidence 5677777788888766 6788888888765
No 15
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=34.59 E-value=1.1e+02 Score=20.57 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=32.5
Q ss_pred CCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCCCEEEEcCCC
Q psy9114 28 GAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK 98 (98)
Q Consensus 28 ~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg~~Iri~iP~ 98 (98)
+-=+.++|++++. -..+.+.+ .+|.|+.-+..+.... ..++++......+.|.+|+
T Consensus 73 ~~~~~i~v~~~~k------~~~~~~~~-~~L~I~~~~~~~~~~~--------~~~~~~~~~~~~i~I~lP~ 128 (166)
T PF13349_consen 73 SDDDKIKVEYNGK------KPEISVEG-GTLTIKSKDRESFFFK--------GFNFNNSDNKSKITIYLPK 128 (166)
T ss_pred cCCccEEEEEcCc------EEEEEEcC-CEEEEEEecccccccc--------eEEEcccCCCcEEEEEECC
Confidence 3337778888655 45566665 5777776431111111 4445555556788888885
No 16
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.67 E-value=73 Score=17.74 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=22.7
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
||.+..-|.+..+..+.+.+.+.+.++.
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~ 28 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIA 28 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCee
Confidence 4667777877899999999999888763
No 17
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=32.26 E-value=78 Score=17.48 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=21.4
Q ss_pred EEEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 58 LIINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 58 l~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
|.|...|.+..+..|.+.+.+.+.++.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~ 28 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIA 28 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCee
Confidence 566777878889999999988887653
No 18
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.25 E-value=75 Score=17.74 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 59 IINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 59 ~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
.|.+.|.|..+..|-++|.+.+.++.
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~ 27 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANII 27 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEE
Confidence 45666779999999999999888764
No 19
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.02 E-value=91 Score=17.85 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.4
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNM 83 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgl 83 (98)
.+.|...|.+.++..|..++.+.++++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I 28 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNI 28 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeE
Confidence 366777887889999999999888765
No 20
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.76 E-value=1.1e+02 Score=17.81 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=22.6
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
+|.|...|.+..+..|-++|.+.+.++.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~ 29 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVL 29 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEE
Confidence 4677788878899999999998887554
No 21
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=29.00 E-value=23 Score=29.85 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=25.7
Q ss_pred ccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHh
Q psy9114 42 YVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVD 78 (98)
Q Consensus 42 ~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~ 78 (98)
.=|++.|-.+..-..-|+|+|||..++..+|.+|+..
T Consensus 412 LILSefaGaa~~l~~AllVNP~d~~~~A~ai~~AL~m 448 (487)
T TIGR02398 412 LVLSEFAGAAVELKGALLTNPYDPVRMDETIYVALAM 448 (487)
T ss_pred EEEeccccchhhcCCCEEECCCCHHHHHHHHHHHHcC
Confidence 4466666555544456999999966677777777754
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=28.78 E-value=1e+02 Score=17.31 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.7
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNM 83 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgl 83 (98)
.|.|...|.+..+..+..++.+.++++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I 28 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNI 28 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeE
Confidence 366778887889999999999988765
No 23
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=28.12 E-value=1e+02 Score=18.38 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.2
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNM 83 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgl 83 (98)
.|.|..+|.+.++..|..+|.+.+.|+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI 28 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDL 28 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCce
Confidence 477888997889999999998876654
No 24
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=27.75 E-value=25 Score=23.53 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=17.6
Q ss_pred CCchHHHHHHHHhCC------------CCCCccC
Q psy9114 66 PQLIPVTMKALVDSG------------MNMNPQQ 87 (98)
Q Consensus 66 ~~~ik~I~kAI~~S~------------LglnP~~ 87 (98)
...+...|-||++|+ ||++|+.
T Consensus 5 ~~tl~~AElAI~dsd~R~~llqEm~~gLgl~p~a 38 (90)
T TIGR02573 5 TKTLQAAELAIRDSDERNDLLQEMWQGLGLGPVA 38 (90)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHcCCChHH
Confidence 457888999999986 7888864
No 25
>PF14873 BNR_assoc_N: N-terminal domain of BNR-repeat neuraminidase
Probab=26.82 E-value=66 Score=22.18 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=17.1
Q ss_pred CceeEEEEcCCcccccceeeeeec
Q psy9114 30 IESLKVEFEDDEYVLQDLAQISRK 53 (98)
Q Consensus 30 ld~I~V~~yg~~~pL~~lAqIsv~ 53 (98)
|+.|.++..|+ +++++|.+|.+=
T Consensus 41 L~~l~l~l~gt-t~l~dI~~v~lY 63 (137)
T PF14873_consen 41 LDELSLDLKGT-TDLSDIESVKLY 63 (137)
T ss_pred eeEEEEEecCC-CChHHhcEEEEE
Confidence 88888888765 567888777654
No 26
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=26.23 E-value=1.6e+02 Score=17.75 Aligned_cols=50 Identities=14% Similarity=0.342 Sum_probs=35.8
Q ss_pred ceeEEEEcCCcccccc---eeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCC
Q psy9114 31 ESLKVEFEDDEYVLQD---LAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGM 81 (98)
Q Consensus 31 d~I~V~~yg~~~pL~~---lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~L 81 (98)
+.+.|++.|..-.|.+ +..+...+...+.|.+-| ......+-+++.+.+.
T Consensus 13 ~~~~i~~~~~~~~l~~~~~v~~v~~~~~~~~~i~l~~-~~~~~~ll~~l~~~g~ 65 (84)
T PF13732_consen 13 NKITIETDGDLEELEELPGVESVEQDGDGKLRIKLED-EETANELLQELIEKGI 65 (84)
T ss_pred CEEEEEECCCHHHHhhCCCeEEEEEeCCcEEEEEECC-cccHHHHHHHHHhCCC
Confidence 4577888776555654 444555455558888888 8888999999998775
No 27
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=25.97 E-value=27 Score=23.54 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=18.9
Q ss_pred cCCCchHHHHHHHHhCC------------CCCCccC
Q psy9114 64 SFPQLIPVTMKALVDSG------------MNMNPQQ 87 (98)
Q Consensus 64 D~~~~ik~I~kAI~~S~------------LglnP~~ 87 (98)
||...++..|-||++|+ ||++|+.
T Consensus 6 ~~~~ti~~AE~AI~dsd~R~~llqEm~~gLg~~p~a 41 (93)
T PF07216_consen 6 DFTETIEQAELAIRDSDHRNDLLQEMLEGLGLGPVA 41 (93)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCChhH
Confidence 34568899999999986 7888864
No 28
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=25.94 E-value=1.6e+02 Score=17.94 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=33.7
Q ss_pred ccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCC
Q psy9114 24 FCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSG 80 (98)
Q Consensus 24 Ra~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~ 80 (98)
...|..=|.|.++|.+...- .+.-.=+.....-+.+.+-+ ..+++.++.||..-.
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~-g~~~~~~~~~~~~~~~~~g~-~~~i~g~e~al~~m~ 56 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLED-GKVFDSSYQEGEPFEFRLGS-GQVIPGLEEALIGMK 56 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETT-SEEEEETTTTTSEEEEETTS-SSSSHHHHHHHTTSB
T ss_pred CccCCCCCEEEEEEEEEECC-CcEEEEeeecCcceeeeecc-Cccccchhhhccccc
Confidence 34566668888888654210 11111111245567777777 789999999998765
No 29
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.72 E-value=1.3e+02 Score=18.43 Aligned_cols=28 Identities=14% Similarity=0.123 Sum_probs=23.3
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
++-|..+|.+.+...+..++...++++-
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~ 29 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIE 29 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEE
Confidence 3566778989999999999999888654
No 30
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=24.66 E-value=28 Score=29.31 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=24.3
Q ss_pred ccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHh
Q psy9114 42 YVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVD 78 (98)
Q Consensus 42 ~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~ 78 (98)
.=|++.|-.+..=..-|+|+|||...+..+|.+|+..
T Consensus 383 LILSefAGaA~~L~~AllVNP~d~~~~A~Ai~~AL~M 419 (474)
T PRK10117 383 LVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTM 419 (474)
T ss_pred EEEecccchHHHhCCCeEECCCCHHHHHHHHHHHHcC
Confidence 3466666444333346899999966677777777653
No 31
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.88 E-value=1.6e+02 Score=17.44 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.4
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
.+.|..+|.+.+...+..++...+|++-
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~ 30 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNIL 30 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeE
Confidence 4667778999999999999998887654
No 32
>PRK09579 multidrug efflux protein; Reviewed
Probab=23.60 E-value=1.2e+02 Score=27.72 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=26.3
Q ss_pred cccCcCCCceeEEEEc-CCcccccceeeeeecC
Q psy9114 23 LFCIPGAIESLKVEFE-DDEYVLQDLAQISRKN 54 (98)
Q Consensus 23 gRa~p~~ld~I~V~~y-g~~~pL~~lAqIsv~~ 54 (98)
.|.+++-|.++.|... |+.+||+++|++....
T Consensus 753 ~r~~~~~L~~l~i~~~~G~~VpL~~va~i~~~~ 785 (1017)
T PRK09579 753 YRDNPGWLNNYYVKNEQGQLLPLSTLITLSDRA 785 (1017)
T ss_pred HhCCHHHHhceEeECCCCCEEEhhHcEEEEEcC
Confidence 4778888999999775 5569999999998764
No 33
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=23.33 E-value=99 Score=28.22 Aligned_cols=30 Identities=13% Similarity=0.007 Sum_probs=24.7
Q ss_pred ccCcCCCceeEEEEcCC-cccccceeeeeec
Q psy9114 24 FCIPGAIESLKVEFEDD-EYVLQDLAQISRK 53 (98)
Q Consensus 24 Ra~p~~ld~I~V~~yg~-~~pL~~lAqIsv~ 53 (98)
|.+++-|.++.|...+. .+||+++|+|...
T Consensus 779 ~~~~~~l~~l~i~~~~g~~vpL~~va~v~~~ 809 (1044)
T TIGR00915 779 RMSPEDINKWYVRNASGEMVPFSAFATGRWE 809 (1044)
T ss_pred cCCHHHHhceEeECCCCCEEEhhheEEEEEc
Confidence 56888899999988544 5999999999854
No 34
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=23.27 E-value=1.3e+02 Score=21.46 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=32.8
Q ss_pred eeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 47 LAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 47 lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
=|..+|+....+-|.+-|.|.-+..|.+++.++++|+.
T Consensus 61 e~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNld 98 (142)
T COG4747 61 EAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLD 98 (142)
T ss_pred HCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCce
Confidence 35677787888999999989999999999999998875
No 35
>PF04036 DUF372: Domain of unknown function (DUF372); InterPro: IPR007179 This is a group of proteins of unknown function. It is found N-terminal to another domain of unknown function (IPR007181 from INTERPRO).; PDB: 2I52_B 2IEC_D 2OGF_C.
Probab=22.60 E-value=73 Score=18.11 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=13.4
Q ss_pred EeccCCCchHHHHHHHHhC
Q psy9114 61 NMSSFPQLIPVTMKALVDS 79 (98)
Q Consensus 61 ~~~D~~~~ik~I~kAI~~S 79 (98)
+|.. +.....+++||.+|
T Consensus 21 tPvs-~~~~~~le~aie~s 38 (38)
T PF04036_consen 21 TPVS-PETAESLEKAIEES 38 (38)
T ss_dssp -EES-TTTHHHHHHHHHHH
T ss_pred CcCC-cchHHHHHHHHhcC
Confidence 3556 77888999999864
No 36
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=22.36 E-value=1.6e+02 Score=16.80 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=22.4
Q ss_pred EEEEeccCCCchHHHHHHHHhCCCCCC
Q psy9114 58 LIINMSSFPQLIPVTMKALVDSGMNMN 84 (98)
Q Consensus 58 l~I~~~D~~~~ik~I~kAI~~S~Lgln 84 (98)
++|...|.+..+..|-+.+.+.++++.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~ 28 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIA 28 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChh
Confidence 566777889999999999999888763
No 37
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.07 E-value=82 Score=21.98 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=24.5
Q ss_pred EEEEeccCCCchHHHHHHHHhCCCCCCccCCCCEEEE
Q psy9114 58 LIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIII 94 (98)
Q Consensus 58 l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg~~Iri 94 (98)
++=+|-. +.....+++||.+|= -++|-.++-.++|
T Consensus 29 f~GtPvs-~~~a~~le~aI~esi-~~QP~v~daeV~I 63 (116)
T COG2098 29 FVGTPVS-PGTAESLEKAIEESI-KVQPFVEDAEVKI 63 (116)
T ss_pred hcCCcCC-ccchHHHHHHHHHHH-hcCCceeeEEEEe
Confidence 3345667 888999999999864 4577766655554
No 38
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=21.06 E-value=2.7e+02 Score=18.64 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=39.6
Q ss_pred ceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCc--hHHHHHHHHhCCCCCCccCCCCEEEEcCCC
Q psy9114 31 ESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQL--IPVTMKALVDSGMNMNPQQEGTTIIIPIPK 98 (98)
Q Consensus 31 d~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~--ik~I~kAI~~S~LglnP~~dg~~Iri~iP~ 98 (98)
|-|+++..+.. +-=..-+.-.+..||-|-+++ +.. +..+...|.+-+..+--..+ ..+-+.+|+
T Consensus 30 DvV~~~~~~g~--~~~~~~v~~sGnsTiRv~~~~-~~~~~~~~v~~~l~~lG~~~E~~~~-~~lav~VP~ 95 (117)
T PF14085_consen 30 DVVRAEPDDGE--LWFQKVVESSGNSTIRVIFDD-PGPDDIEAVREELEALGCTVEGFSE-RMLAVDVPP 95 (117)
T ss_pred CEEEEEeCCCe--EEEEEEEecCCCEEEEEEEcC-CcchhHHHHHHHHHHcCCeEEccCC-CEEEEEECC
Confidence 44566665532 222333455677777777777 555 88999999875554444444 778787774
No 39
>PF02482 Ribosomal_S30AE: Sigma 54 modulation protein / S30EA ribosomal protein; InterPro: IPR003489 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the sigma-54 modulation protein family and the S30Ae family of ribosomal proteins which includes the light-repressed protein (lrtA) [].; GO: 0005488 binding, 0044238 primary metabolic process; PDB: 1L4S_A 1VOX_a 1VOV_a 3V2E_Y 3V2C_Y 1N3G_A 1VOS_a 1VOZ_a 1VOQ_a 1IMU_A ....
Probab=20.89 E-value=1e+02 Score=19.04 Aligned_cols=70 Identities=10% Similarity=-0.011 Sum_probs=39.0
Q ss_pred CCCCCcccccccccccccccccCcCCCceeEEEEcC---CcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHh
Q psy9114 4 QITPQPQRHSPQPILVNTPLFCIPGAIESLKVEFED---DEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVD 78 (98)
Q Consensus 4 ~~~~~~~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg---~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~ 78 (98)
.+|+.-.++..+.|.++ .|..+.+ .++.|.+.. ..-...=-.++..+ +..+.++-++ .++-.+|..|+.+
T Consensus 10 ~~t~~l~~~i~~kl~kl--~~~~~~i-~~~~V~l~~~~~~~~~~~v~i~i~~~-~~~l~a~~~~-~d~~~Aid~a~dk 82 (97)
T PF02482_consen 10 ELTDALREYIEEKLEKL--ERFFDDI-IEAHVTLSKEKSEGKGYRVEITIHVP-GHVLVAEESA-EDLYAAIDEAFDK 82 (97)
T ss_dssp ---HHHHHHHHHHHHHH--HTTSSC--SEEEEEEEEE--ETTEEEEEEEEEET-TEEEEEEEEE-SSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH--HhhcCCC-eeEEEEEEEeeccCCCEEEEEEEEeC-CceEEEEEec-CCHHHHHHHHHHH
Confidence 34555556666666662 3444444 557777654 22212222344443 5578888888 8888888888754
No 40
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.49 E-value=1.8e+02 Score=17.39 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=23.0
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNM 83 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgl 83 (98)
.+.|...|.+.++..|..++.+.++++
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI 29 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTV 29 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEE
Confidence 456677788999999999999999876
No 41
>PF10761 DUF2590: Protein of unknown function (DUF2590); InterPro: IPR019697 This entry is represented by Bacteriophage HP1, Orf28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.31 E-value=79 Score=21.61 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=17.8
Q ss_pred EeccCCCchHHHHHHHHhCCCC
Q psy9114 61 NMSSFPQLIPVTMKALVDSGMN 82 (98)
Q Consensus 61 ~~~D~~~~ik~I~kAI~~S~Lg 82 (98)
.+.|..+...+|..||.+|||-
T Consensus 20 ~~~~r~sIaQDikH~I~ESGL~ 41 (102)
T PF10761_consen 20 LCSDRASIAQDIKHAIRESGLA 41 (102)
T ss_pred EecchhHHHHHHHHHHHHcchH
Confidence 4456677888999999999983
No 42
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.07 E-value=2e+02 Score=17.28 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.5
Q ss_pred EEEEeccCCCchHHHHHHHHhCCCCC
Q psy9114 58 LIINMSSFPQLIPVTMKALVDSGMNM 83 (98)
Q Consensus 58 l~I~~~D~~~~ik~I~kAI~~S~Lgl 83 (98)
+-|.-.|.|.++..|..++...++++
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI 28 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNV 28 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcE
Confidence 45556788999999999999988765
No 43
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=20.05 E-value=40 Score=28.18 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=18.3
Q ss_pred ccceeeeeecCC-cEEEEEeccCCCchHHHHHHHH
Q psy9114 44 LQDLAQISRKNP-KTLIINMSSFPQLIPVTMKALV 77 (98)
Q Consensus 44 L~~lAqIsv~~~-~~l~I~~~D~~~~ik~I~kAI~ 77 (98)
|+|.|--+.-=+ -.|.|+|||...+..+|.+|+.
T Consensus 405 LSefaGaa~~L~~~al~VNP~d~~~~A~ai~~AL~ 439 (474)
T PF00982_consen 405 LSEFAGAAEQLSEAALLVNPWDIEEVADAIHEALT 439 (474)
T ss_dssp EETTBGGGGT-TTS-EEE-TT-HHHHHHHHHHHHT
T ss_pred eeccCCHHHHcCCccEEECCCChHHHHHHHHHHHc
Confidence 444444433222 2478999996667777777765
Done!