Query psy9114
Match_columns 98
No_of_seqs 110 out of 1016
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:18:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dd5_A Ribosome recycling fact 100.0 3.5E-36 1.2E-40 220.7 6.4 88 10-98 17-104 (185)
2 1ise_A Ribosome recycling fact 100.0 3.6E-36 1.2E-40 220.6 6.2 88 10-98 17-104 (185)
3 1is1_A Ribosome recycling fact 100.0 3.8E-36 1.3E-40 220.4 6.1 88 10-98 17-104 (185)
4 1wqg_A Ribosome recycling fact 100.0 3.8E-36 1.3E-40 220.4 5.8 88 10-98 17-104 (185)
5 1eh1_A Ribosome recycling fact 100.0 3.9E-36 1.3E-40 220.4 4.2 88 10-98 18-105 (185)
6 4gfq_A Ribosome-recycling fact 100.0 5.2E-36 1.8E-40 223.3 4.8 88 10-98 41-128 (209)
7 1wih_A Mitochondrial ribosome 100.0 1.8E-35 6E-40 193.8 6.6 76 23-98 1-76 (84)
8 1ge9_A Ribosome recycling fact 100.0 3.7E-35 1.3E-39 215.1 4.4 87 10-98 20-106 (184)
9 1in0_A YAJQ protein, HI1034; a 64.1 1.8 6.2E-05 30.8 0.6 31 64-95 103-133 (163)
10 2ko1_A CTR148A, GTP pyrophosph 28.1 60 0.002 18.4 3.2 27 57-83 7-33 (88)
11 1zpv_A ACT domain protein; str 24.7 75 0.0026 18.3 3.2 27 57-83 7-33 (91)
12 2l7r_A Ubiquitin-like protein 23.4 1.3E+02 0.0043 18.0 4.1 30 48-78 20-49 (93)
13 1b64_A Elongation factor 1-bet 23.0 94 0.0032 19.5 3.5 28 53-80 5-32 (91)
14 1gh8_A Translation elongation 21.9 1E+02 0.0035 19.3 3.5 23 57-79 7-29 (89)
No 1
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=100.00 E-value=3.5e-36 Score=220.68 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=86.2
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus 17 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG 95 (185)
T 1dd5_A 17 LEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWD-KSVLSLIEKAINASDLGLNPINDG 95 (185)
T ss_dssp HHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESS-TTHHHHHHHHHHHSSSCCCCEECS
T ss_pred HHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence 3689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 96 ~~Iri~iP~ 104 (185)
T 1dd5_A 96 NVIRLVFPS 104 (185)
T ss_dssp SCEEEECCC
T ss_pred CEEEEeCCC
Confidence 999999996
No 2
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=100.00 E-value=3.6e-36 Score=220.58 Aligned_cols=88 Identities=24% Similarity=0.388 Sum_probs=86.2
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus 17 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG 95 (185)
T 1ise_A 17 VEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD-RSMSPAVEKAIMASDLGLNPNSAG 95 (185)
T ss_dssp HHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESS-GGGHHHHHHHHHTTCTTCCCEESS
T ss_pred HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence 3689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 96 ~~Iri~iP~ 104 (185)
T 1ise_A 96 SDIRVPLPP 104 (185)
T ss_dssp SEEEEECCC
T ss_pred CEEEEeCCC
Confidence 999999996
No 3
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=100.00 E-value=3.8e-36 Score=220.43 Aligned_cols=88 Identities=22% Similarity=0.328 Sum_probs=86.2
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus 17 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG 95 (185)
T 1is1_A 17 VEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFD-KELTQKVEKAIMMSDLGLNPMSAG 95 (185)
T ss_dssp HHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESS-TTTHHHHHHHHHHTTSSCCCEEET
T ss_pred HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence 3689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 96 ~~Iri~iP~ 104 (185)
T 1is1_A 96 TIIRVPLPP 104 (185)
T ss_dssp TEEEEECCC
T ss_pred CEEEEeCCC
Confidence 999999996
No 4
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=100.00 E-value=3.8e-36 Score=220.44 Aligned_cols=88 Identities=15% Similarity=0.289 Sum_probs=86.2
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus 17 i~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG 95 (185)
T 1wqg_A 17 VAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYE-ANQLRAIETAIRNSDLGVNPTNDG 95 (185)
T ss_dssp HHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESS-GGGHHHHHHHHHHSTTCCCCEECS
T ss_pred HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence 3689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 96 ~~Iri~iP~ 104 (185)
T 1wqg_A 96 ALIRVAVPQ 104 (185)
T ss_dssp SCEEEECCC
T ss_pred CEEEEeCCC
Confidence 999999996
No 5
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=100.00 E-value=3.9e-36 Score=220.42 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=86.2
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus 18 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~SdLglnP~~dG 96 (185)
T 1eh1_A 18 LEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWD-QNALKAIEKAIRDSDLGLNPSNKG 96 (185)
T ss_dssp HHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSS-HHHHHHHHHHHSSSTTCCCEEEET
T ss_pred HHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCC-HhHHHHHHHHHHHcCCCCCcccCC
Confidence 3689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 97 ~~Iri~iP~ 105 (185)
T 1eh1_A 97 DALYINIPP 105 (185)
T ss_dssp TEEEEECCC
T ss_pred CEEEEeCCC
Confidence 999999996
No 6
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=100.00 E-value=5.2e-36 Score=223.29 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=86.2
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
.++|+.+|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++|+|||||++||
T Consensus 41 ie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D-~s~i~~IekAI~~S~LglnP~~dG 119 (209)
T 4gfq_A 41 VAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD-KTSIGDIEKAILKADLGLNPSNDG 119 (209)
T ss_dssp HHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESS-GGGHHHHHHHHHHHTSSCCCEECS
T ss_pred HHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCc-HhhHHHHHHHHHHcCCCCCCCcCC
Confidence 3689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 120 ~~Iri~iP~ 128 (209)
T 4gfq_A 120 TVIRIAFPA 128 (209)
T ss_dssp SCEEEECCB
T ss_pred CceeeeCCC
Confidence 999999995
No 7
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=100.00 E-value=1.8e-35 Score=193.80 Aligned_cols=76 Identities=38% Similarity=0.650 Sum_probs=74.9
Q ss_pred cccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCCCEEEEcCCC
Q psy9114 23 LFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK 98 (98)
Q Consensus 23 gRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg~~Iri~iP~ 98 (98)
|||||++||+|+|+|||+++||+|+|+|+++++|+|+|+||||++++++|+|||++|+||+||++||+.|||+||+
T Consensus 1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~ 76 (84)
T 1wih_A 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPK 76 (84)
T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCC
T ss_pred CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCC
Confidence 8999999999999999999999999999999999999999998899999999999999999999999999999996
No 8
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=100.00 E-value=3.7e-35 Score=215.07 Aligned_cols=87 Identities=21% Similarity=0.333 Sum_probs=85.2
Q ss_pred ccccccccccccccccCcCCCceeEEEEcCCcccccceeeeeecCCcEEEEEeccCCCchHHHHHHHHhCCCCCCccCCC
Q psy9114 10 QRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89 (98)
Q Consensus 10 ~~~~~~~~~k~~tgRa~p~~ld~I~V~~yg~~~pL~~lAqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~S~LglnP~~dg 89 (98)
-++|+++|+++|||||||++||+|+|+|||+++||+|||+|+++++|+|+|+||| ++++++|+|||++ +|||||++||
T Consensus 20 ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D-~~~i~~IekAI~~-dLglnP~~dG 97 (184)
T 1ge9_A 20 VEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWD-QNAVPAIEKAIRE-ELNLNPTVQG 97 (184)
T ss_dssp HHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSS-SSHHHHHHHHHHH-HHCSCCEEET
T ss_pred HHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecC-HHHHHHHHHHHHh-CCCCCcccCC
Confidence 3689999999999999999999999999999999999999999999999999999 9999999999999 9999999999
Q ss_pred CEEEEcCCC
Q psy9114 90 TTIIIPIPK 98 (98)
Q Consensus 90 ~~Iri~iP~ 98 (98)
+.|||+||+
T Consensus 98 ~~Iri~iP~ 106 (184)
T 1ge9_A 98 NVIRVTLPP 106 (184)
T ss_dssp TEEEEECCC
T ss_pred CEEEEeCCC
Confidence 999999996
No 9
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=64.09 E-value=1.8 Score=30.77 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=28.9
Q ss_pred cCCCchHHHHHHHHhCCCCCCccCCCCEEEEc
Q psy9114 64 SFPQLIPVTMKALVDSGMNMNPQQEGTTIIIP 95 (98)
Q Consensus 64 D~~~~ik~I~kAI~~S~LglnP~~dg~~Iri~ 95 (98)
| ....|.|.|+|++|.|-++.+..|..+||.
T Consensus 103 ~-~e~AKkIvK~IKdsklKVqa~IQGd~vRVt 133 (163)
T 1in0_A 103 E-TEMAKKITKLVKDSKIKVQTQIQGEQVRVT 133 (163)
T ss_dssp C-HHHHHHHHHHHHHHTCSEEEEEETTEEEEE
T ss_pred C-HHHHHHHHHHHHhcCCcceeEecCcEEEEe
Confidence 6 779999999999999999999999999984
No 10
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=28.13 E-value=60 Score=18.44 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=22.1
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNM 83 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgl 83 (98)
.|.|...|.|..+..|.+++.+.+.++
T Consensus 7 ~l~v~~~Dr~G~L~~I~~~la~~~inI 33 (88)
T 2ko1_A 7 GIRIVGEDKNGMTNQITGVISKFDTNI 33 (88)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTSSSCE
T ss_pred EEEEEEECCCcHHHHHHHHHHHCCCCe
Confidence 456777788899999999999887765
No 11
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=24.68 E-value=75 Score=18.34 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=22.7
Q ss_pred EEEEEeccCCCchHHHHHHHHhCCCCC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDSGMNM 83 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S~Lgl 83 (98)
.|.|...|.|..+..|.+.|.+.+.|+
T Consensus 7 ~l~v~~~DrpGila~vt~~la~~~~NI 33 (91)
T 1zpv_A 7 IITVVGKDKSGIVAGVSGKIAELGLNI 33 (91)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCE
Confidence 466777898999999999999987654
No 12
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=23.44 E-value=1.3e+02 Score=17.98 Aligned_cols=30 Identities=3% Similarity=0.072 Sum_probs=22.5
Q ss_pred eeeeecCCcEEEEEeccCCCchHHHHHHHHh
Q psy9114 48 AQISRKNPKTLIINMSSFPQLIPVTMKALVD 78 (98)
Q Consensus 48 AqIsv~~~~~l~I~~~D~~~~ik~I~kAI~~ 78 (98)
-+|.|+.++++.+.+.. ...+..+.+.|.+
T Consensus 20 m~I~Vk~g~~~~l~v~~-~~TV~~LK~~I~~ 49 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTG-QETVAQIKAHVAS 49 (93)
T ss_dssp CEEEEESSSEEEEECCS-SCBHHHHHHHHHH
T ss_pred EEEEEECCCEEEEEeCC-CCcHHHHHHHHHH
Confidence 35666667777777765 6788888888876
No 13
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=23.01 E-value=94 Score=19.51 Aligned_cols=28 Identities=7% Similarity=-0.140 Sum_probs=22.4
Q ss_pred cCCcEEEEEeccCCCchHHHHHHHHhCC
Q psy9114 53 KNPKTLIINMSSFPQLIPVTMKALVDSG 80 (98)
Q Consensus 53 ~~~~~l~I~~~D~~~~ik~I~kAI~~S~ 80 (98)
|..-.|-|.|||-...+..++++|++.-
T Consensus 5 ks~vvl~VkP~d~etDl~~L~~~Vr~i~ 32 (91)
T 1b64_A 5 KSSILLDVKPWDDETDMAKLEECVRSIQ 32 (91)
T ss_dssp CEEEEEEEEESSTTSCHHHHHHHHHHCC
T ss_pred eEEEEEEEccCCCCcCHHHHHHHHHHhC
Confidence 3344688999997779999999999854
No 14
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=21.94 E-value=1e+02 Score=19.28 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=19.3
Q ss_pred EEEEEeccCCCchHHHHHHHHhC
Q psy9114 57 TLIINMSSFPQLIPVTMKALVDS 79 (98)
Q Consensus 57 ~l~I~~~D~~~~ik~I~kAI~~S 79 (98)
+|-|.|||-...+..++++|++.
T Consensus 7 ~l~V~P~d~etDl~~L~~~vk~~ 29 (89)
T 1gh8_A 7 TIKVMPESPDVDLEALKKEIQER 29 (89)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHH
T ss_pred EEEEccCCCCCCHHHHHHHHHHh
Confidence 57899999677899999999874
Done!