Your job contains 1 sequence.
>psy9114
MNSQITPQPQRHSPQPILVNTPLFCIPGAIESLKVEFEDDEYVLQDLAQISRKNPKTLII
NMSSFPQLIPVTMKALVDSGMNMNPQQEGTTIIIPIPK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9114
(98 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035980 - symbol:CG4447 species:7227 "Drosophila m... 243 1.3e-20 1
UNIPROTKB|E1BQ58 - symbol:MRRF "Uncharacterized protein" ... 180 5.2e-16 2
UNIPROTKB|Q0VCQ4 - symbol:MRRF "Ribosome-recycling factor... 181 4.9e-14 1
MGI|MGI:1915121 - symbol:Mrrf "mitochondrial ribosome rec... 178 1.0e-13 1
RGD|1305897 - symbol:Mrrf "mitochondrial ribosome recycli... 177 1.3e-13 1
UNIPROTKB|F1SLQ7 - symbol:LOC100515005 "Uncharacterized p... 176 1.6e-13 1
UNIPROTKB|Q96E11 - symbol:MRRF "Ribosome-recycling factor... 175 2.1e-13 1
ZFIN|ZDB-GENE-040704-12 - symbol:mrrf "mitochondrial ribo... 171 5.6e-13 1
UNIPROTKB|J9P265 - symbol:MRRF "Uncharacterized protein" ... 170 7.1e-13 1
UNIPROTKB|Q4TT42 - symbol:MRRFP1 "Protein MRRFP1" species... 167 1.6e-12 1
UNIPROTKB|G3N1Z2 - symbol:MRRF "Ribosome-recycling factor... 95 6.3e-05 1
TIGR_CMR|CBU_1383 - symbol:CBU_1383 "ribosome recycling f... 96 8.0e-05 1
UNIPROTKB|P0A805 - symbol:frr "ribosome recycling factor"... 94 0.00014 1
DICTYBASE|DDB_G0268518 - symbol:DDB_G0268518 "Ribosome-re... 95 0.00025 1
TAIR|locus:2082309 - symbol:AT3G01800 species:3702 "Arabi... 95 0.00026 1
WB|WBGene00020625 - symbol:mrrf-1 species:6239 "Caenorhab... 94 0.00027 1
TIGR_CMR|SPO_1664 - symbol:SPO_1664 "ribosome recycling f... 90 0.00042 1
>FB|FBgn0035980 [details] [associations]
symbol:CG4447 species:7227 "Drosophila melanogaster"
[GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR002661 InterPro:IPR016000 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
EMBL:AY069172 ProteinModelPortal:Q8T0M6 SMR:Q8T0M6 STRING:Q8T0M6
PaxDb:Q8T0M6 PRIDE:Q8T0M6 FlyBase:FBgn0035980 InParanoid:Q8T0M6
OrthoDB:EOG4H9W2V ArrayExpress:Q8T0M6 Bgee:Q8T0M6
PANTHER:PTHR20982:SF4 Uniprot:Q8T0M6
Length = 254
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 44/71 (61%), Positives = 59/71 (83%)
Query: 28 GAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQ 87
GAI++L+++ + E+ LQ+LAQISRKNPKT+I+NM FPQ IP +KA+ SGMN+NPQQ
Sbjct: 106 GAIDTLRIKVDGQEHELQELAQISRKNPKTIIVNMIGFPQTIPDVLKAIEKSGMNLNPQQ 165
Query: 88 EGTTIIIPIPK 98
+GTT+ IPIPK
Sbjct: 166 DGTTLFIPIPK 176
>UNIPROTKB|E1BQ58 [details] [associations]
symbol:MRRF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006412 "translation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR002661 InterPro:IPR016000
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399
GeneTree:ENSGT00390000005084 PANTHER:PTHR20982:SF4
EMBL:AADN02026362 IPI:IPI00572512 RefSeq:XP_003642346.1
RefSeq:XP_415395.1 UniGene:Gga.7262 Ensembl:ENSGALT00000002038
GeneID:417110 KEGG:gga:417110 NextBio:20820466 Uniprot:E1BQ58
Length = 259
Score = 180 (68.4 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 31/71 (43%), Positives = 52/71 (73%)
Query: 28 GAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQ 87
GA++ + V +D ++ L L QIS+K+P+ +++NM+SFP+ MKA+ +SGMN+NP+
Sbjct: 111 GALDHIIVTTKDGKFPLNQLGQISQKSPQLIVVNMTSFPESTAAAMKAIRESGMNLNPEV 170
Query: 88 EGTTIIIPIPK 98
+GT I +P+PK
Sbjct: 171 DGTLIRVPVPK 181
Score = 33 (16.7 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 11 RHSPQPILVNTPL 23
RH P+L+ PL
Sbjct: 42 RHCAHPLLLARPL 54
>UNIPROTKB|Q0VCQ4 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002661
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 eggNOG:COG0233 KO:K02838 InterPro:IPR023584
SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:BC120054 IPI:IPI00714526
RefSeq:NP_001069775.1 UniGene:Bt.21335 ProteinModelPortal:Q0VCQ4
SMR:Q0VCQ4 STRING:Q0VCQ4 PRIDE:Q0VCQ4 GeneID:614013 KEGG:bta:614013
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 InParanoid:Q0VCQ4
OrthoDB:EOG4QRH4V NextBio:20898894 Uniprot:Q0VCQ4
Length = 262
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 32/72 (44%), Positives = 52/72 (72%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
PGA++++ V D + L ++QIS K+P+ +++NM+SFP+ +KA+ +SGMN+NP+
Sbjct: 113 PGALDNITVVTADGKLPLNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPE 172
Query: 87 QEGTTIIIPIPK 98
EGT I +PIPK
Sbjct: 173 VEGTLIRVPIPK 184
>MGI|MGI:1915121 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0032790 "ribosome disassembly"
evidence=ISO] InterPro:IPR002661 Pfam:PF01765 MGI:MGI:1915121
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399 HOGENOM:HOG000007351
HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V GeneTree:ENSGT00390000005084
EMBL:AK010018 EMBL:AK032371 EMBL:BX293557 EMBL:BC019787
IPI:IPI00109501 RefSeq:NP_080698.1 UniGene:Mm.378232 PDB:1WIH
PDBsum:1WIH ProteinModelPortal:Q9D6S7 SMR:Q9D6S7 STRING:Q9D6S7
PaxDb:Q9D6S7 PRIDE:Q9D6S7 Ensembl:ENSMUST00000028250 GeneID:67871
KEGG:mmu:67871 UCSC:uc008jlj.2 InParanoid:B1B055
EvolutionaryTrace:Q9D6S7 NextBio:325787 Bgee:Q9D6S7 CleanEx:MM_MRRF
Genevestigator:Q9D6S7 GermOnline:ENSMUSG00000026887 Uniprot:Q9D6S7
Length = 262
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 31/72 (43%), Positives = 50/72 (69%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
PG+++ + V D + L + QIS K+P+ +++NM+SFP+ +KA+ +SGMN+NP+
Sbjct: 113 PGSLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPE 172
Query: 87 QEGTTIIIPIPK 98
EGT I +PIPK
Sbjct: 173 VEGTLIRVPIPK 184
>RGD|1305897 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
[GO:0032790 "ribosome disassembly" evidence=ISO] InterPro:IPR002661
Pfam:PF01765 RGD:1305897 GO:GO:0005739 GO:GO:0006412
Gene3D:3.30.1360.40 InterPro:IPR024946 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 OMA:TREHRES
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V
GeneTree:ENSGT00390000005084 EMBL:BC085779 IPI:IPI00372124
RefSeq:NP_001008355.1 UniGene:Rn.105234 ProteinModelPortal:Q5RKI9
SMR:Q5RKI9 STRING:Q5RKI9 PhosphoSite:Q5RKI9 PRIDE:Q5RKI9
Ensembl:ENSRNOT00000033047 GeneID:311903 KEGG:rno:311903
UCSC:RGD:1305897 InParanoid:Q5RKI9 NextBio:664438
Genevestigator:Q5RKI9 GermOnline:ENSRNOG00000025997 Uniprot:Q5RKI9
Length = 262
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 31/72 (43%), Positives = 50/72 (69%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
PG+++ + V D + L + QIS K+P+ +++NM+SFP+ +KA+ +SGMN+NP+
Sbjct: 113 PGSLDHITVVTADGKLALNQIGQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPE 172
Query: 87 QEGTTIIIPIPK 98
EGT I +PIPK
Sbjct: 173 VEGTLIRVPIPK 184
>UNIPROTKB|F1SLQ7 [details] [associations]
symbol:LOC100515005 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
OMA:TREHRES GeneTree:ENSGT00390000005084 EMBL:CU041257
RefSeq:XP_003480647.1 Ensembl:ENSSSCT00000006083 GeneID:100515005
KEGG:ssc:100515005 Uniprot:F1SLQ7
Length = 262
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
PG+++ + V D + L + QIS K+P+ +++NM+SFP+ +KA+ +SGMN+NP
Sbjct: 113 PGSLDQITVVTADGKLALNQIGQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPD 172
Query: 87 QEGTTIIIPIPK 98
EGT I +PIPK
Sbjct: 173 VEGTLIRVPIPK 184
>UNIPROTKB|Q96E11 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0032790 "ribosome
disassembly" evidence=IDA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 EMBL:CH471090 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0032790 EMBL:AL162424 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
CTD:92399 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V EMBL:AK291603
EMBL:AK298046 EMBL:AK291809 EMBL:AK292790 EMBL:AK300718
EMBL:AK316266 EMBL:BC013049 EMBL:BC053604 IPI:IPI00030596
IPI:IPI00061108 IPI:IPI00412392 IPI:IPI00514034 IPI:IPI00555800
IPI:IPI00556454 IPI:IPI00556600 RefSeq:NP_001166983.1
RefSeq:NP_620132.1 RefSeq:NP_954646.1 UniGene:Hs.368011
ProteinModelPortal:Q96E11 SMR:Q96E11 IntAct:Q96E11 STRING:Q96E11
PhosphoSite:Q96E11 DMDM:62901043 PaxDb:Q96E11 PRIDE:Q96E11
DNASU:92399 Ensembl:ENST00000297908 Ensembl:ENST00000344641
Ensembl:ENST00000373723 Ensembl:ENST00000373724
Ensembl:ENST00000373727 Ensembl:ENST00000373728
Ensembl:ENST00000373729 Ensembl:ENST00000373730
Ensembl:ENST00000394315 Ensembl:ENST00000441707
Ensembl:ENST00000467864 Ensembl:ENST00000470366
Ensembl:ENST00000489572 Ensembl:ENST00000546115 GeneID:92399
KEGG:hsa:92399 UCSC:uc010mwa.3 UCSC:uc011lyq.2 UCSC:uc022bmy.1
GeneCards:GC09P125026 HGNC:HGNC:7234 MIM:604602 neXtProt:NX_Q96E11
PharmGKB:PA31029 InParanoid:Q96E11 OMA:VMVEYYG PhylomeDB:Q96E11
GenomeRNAi:92399 NextBio:77750 Bgee:Q96E11 Genevestigator:Q96E11
GermOnline:ENSG00000148187 Uniprot:Q96E11
Length = 262
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 30/72 (41%), Positives = 51/72 (70%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
PG+++ + V D + L ++QIS K+P+ +++NM+SFP+ +KA+ +SGMN+NP+
Sbjct: 113 PGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPE 172
Query: 87 QEGTTIIIPIPK 98
EGT I +PIP+
Sbjct: 173 VEGTLIRVPIPQ 184
>ZFIN|ZDB-GENE-040704-12 [details] [associations]
symbol:mrrf "mitochondrial ribosome recycling
factor" species:7955 "Danio rerio" [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR002661
InterPro:IPR016000 Pfam:PF01765 ZFIN:ZDB-GENE-040704-12
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516
OrthoDB:EOG4QRH4V PANTHER:PTHR20982:SF4 EMBL:BC074048
IPI:IPI00513547 RefSeq:NP_001002174.1 UniGene:Dr.84906
ProteinModelPortal:Q6GMJ7 SMR:Q6GMJ7 STRING:Q6GMJ7 GeneID:431721
KEGG:dre:431721 InParanoid:Q6GMJ7 NextBio:20830957
ArrayExpress:Q6GMJ7 Uniprot:Q6GMJ7
Length = 257
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
PGA++ + V +D ++ L L QIS K+P+ L++NM+ FP+ + +AL +S M +NP+
Sbjct: 108 PGALDHITVTTKDGKFPLNQLGQISMKSPQLLVVNMTGFPEAMVAVTRALRESSMGLNPE 167
Query: 87 QEGTTIIIPIPK 98
EGT I +P+PK
Sbjct: 168 VEGTIIRVPVPK 179
>UNIPROTKB|J9P265 [details] [associations]
symbol:MRRF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002661 Pfam:PF01765 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399
GeneTree:ENSGT00390000005084 EMBL:AAEX03006907 RefSeq:XP_537859.2
ProteinModelPortal:J9P265 Ensembl:ENSCAFT00000043300 GeneID:480739
KEGG:cfa:480739 Uniprot:J9P265
Length = 262
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
PG+++ + V + + L + QIS K+P +++NM+SFP+ +KA+ +SGMN+NP+
Sbjct: 113 PGSLDRITVVTANGKLALNQIGQISMKSPHLILVNMASFPECTAAAIKAIRESGMNLNPE 172
Query: 87 QEGTTIIIPIPK 98
EGT I +PIPK
Sbjct: 173 VEGTLIRVPIPK 184
>UNIPROTKB|Q4TT42 [details] [associations]
symbol:MRRFP1 "Protein MRRFP1" species:9606 "Homo sapiens"
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002661
Pfam:PF01765 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
EMBL:Z83848 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000007351 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V
IPI:IPI00176976 SMR:Q4TT42 STRING:Q4TT42 Ensembl:ENST00000435941
HGNC:HGNC:35238 OMA:IREHREM Uniprot:Q4TT42
Length = 262
Score = 167 (63.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
PG+++ + V D + L + QIS K P+ +++NM+SFP+ +KA+ +SGMN+NP+
Sbjct: 113 PGSLDKIAVVTADGKLALNQIRQISVKLPQLILVNMASFPEFTVAAIKAIRESGMNLNPE 172
Query: 87 QEGTTIIIPIPK 98
EGT I +PIP+
Sbjct: 173 VEGTLIRVPIPQ 184
>UNIPROTKB|G3N1Z2 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9913 "Bos taurus" [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002661 Pfam:PF01765 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 GeneTree:ENSGT00390000005084 EMBL:DAAA02032025
Ensembl:ENSBTAT00000064264 OMA:XISQMAD Uniprot:G3N1Z2
Length = 153
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 16/41 (39%), Positives = 30/41 (73%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQ 67
PGA++++ V D + L ++QIS K+P+ +++NM+SFP+
Sbjct: 113 PGALDNITVVTADGKLPLNQISQISMKSPQLILVNMASFPE 153
>TIGR_CMR|CBU_1383 [details] [associations]
symbol:CBU_1383 "ribosome recycling factor" species:227377
"Coxiella burnetii RSA 493" [GO:0006412 "translation" evidence=ISS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 GO:GO:0006412 EMBL:AE016828 GenomeReviews:AE016828_GR
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG ProtClustDB:PRK00083 RefSeq:NP_820372.1
ProteinModelPortal:Q83BV4 SMR:Q83BV4 PRIDE:Q83BV4 GeneID:1209289
KEGG:cbu:CBU_1383 PATRIC:17931511
BioCyc:CBUR227377:GJ7S-1371-MONOMER Uniprot:Q83BV4
Length = 185
Score = 96 (38.9 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
P +E +KV++ + E L +A I+ +NP+TL I + P+ KA+ + + +NP
Sbjct: 34 PSLLEHIKVDYYNVETPLSQVASIAIENPRTLSITPWEKNMVGPIE-KAIQKADLGLNPA 92
Query: 87 QEGTTIIIPIP 97
G I +P+P
Sbjct: 93 TVGMVIRVPLP 103
>UNIPROTKB|P0A805 [details] [associations]
symbol:frr "ribosome recycling factor" species:83333
"Escherichia coli K-12" [GO:0043022 "ribosome binding"
evidence=IDA] [GO:0032790 "ribosome disassembly" evidence=IMP]
[GO:0006412 "translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0043022 EMBL:U70214
GO:GO:0032790 EMBL:D13334 PDB:2RDO PDBsum:2RDO eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 EMBL:J05113 EMBL:M69029 PIR:A34495
RefSeq:NP_414714.1 RefSeq:YP_488474.1 PDB:1EK8 PDB:1ISE PDB:1ZN0
PDB:1ZN1 PDB:4GAS PDB:4GD1 PDBsum:1EK8 PDBsum:1ISE PDBsum:1ZN0
PDBsum:1ZN1 PDBsum:4GAS PDBsum:4GD1 ProteinModelPortal:P0A805
SMR:P0A805 DIP:DIP-48120N IntAct:P0A805 MINT:MINT-1308979
SWISS-2DPAGE:P0A805 PaxDb:P0A805 PRIDE:P0A805
EnsemblBacteria:EBESCT00000001100 EnsemblBacteria:EBESCT00000016070
GeneID:12930756 GeneID:946122 KEGG:ecj:Y75_p0168 KEGG:eco:b0172
PATRIC:32115453 EchoBASE:EB0331 EcoGene:EG10335
BioCyc:EcoCyc:EG10335-MONOMER BioCyc:ECOL316407:JW0167-MONOMER
EvolutionaryTrace:P0A805 Genevestigator:P0A805 Uniprot:P0A805
Length = 185
Score = 94 (38.1 bits), Expect = 0.00014, P = 0.00014
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
P ++ + VE+ L+ LA ++ ++ +TL IN+ + P KA++ S + +NP
Sbjct: 34 PSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFD-RSMSPAVEKAIMASDLGLNPN 92
Query: 87 QEGTTIIIPIP 97
G+ I +P+P
Sbjct: 93 SAGSDIRVPLP 103
>DICTYBASE|DDB_G0268518 [details] [associations]
symbol:DDB_G0268518 "Ribosome-recycling factor,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0006412
"translation" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR002661 dictyBase:DDB_G0268518
Pfam:PF01765 GO:GO:0006412 EMBL:AAFI02000003 eggNOG:COG0233
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
RefSeq:XP_647294.1 ProteinModelPortal:Q55G90 STRING:Q55G90
EnsemblProtists:DDB0216552 GeneID:8616100 KEGG:ddi:DDB_G0268518
InParanoid:Q55G90 OMA:IKQVNTI ProtClustDB:CLSZ2846946
Uniprot:Q55G90
Length = 263
Score = 95 (38.5 bits), Expect = 0.00025, P = 0.00025
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
P +E + VE +L +A I+ K+ TL I + L+ +AL +SG+ +NPQ
Sbjct: 116 PELLERINVETPSGNLLLPHMAMITIKDSLTLNITLYD-SSLLSNVERALTNSGLGLNPQ 174
Query: 87 QEGTTIIIPIPK 98
TTI + +PK
Sbjct: 175 TFDTTIRVSLPK 186
>TAIR|locus:2082309 [details] [associations]
symbol:AT3G01800 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0006626 "protein targeting to
mitochondrion" evidence=RCA] [GO:0019408 "dolichol biosynthetic
process" evidence=RCA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 EMBL:CP002686 GO:GO:0006412 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:BT010432
EMBL:AK176317 EMBL:AK220929 IPI:IPI00527773 RefSeq:NP_186829.3
UniGene:At.43211 ProteinModelPortal:Q6NQM0 SMR:Q6NQM0 STRING:Q6NQM0
PRIDE:Q6NQM0 EnsemblPlants:AT3G01800.1 GeneID:821076
KEGG:ath:AT3G01800 TAIR:At3g01800 InParanoid:Q6NQM0 OMA:SMKSIEH
PhylomeDB:Q6NQM0 ProtClustDB:CLSN2680816 Genevestigator:Q6NQM0
Uniprot:Q6NQM0
Length = 267
Score = 95 (38.5 bits), Expect = 0.00026, P = 0.00026
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
PG ++ + VE + L LA +S +PKTL +N P + KA+V S + +NP+
Sbjct: 118 PGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYD-PDTVKELEKAIVASPLGLNPK 176
Query: 87 QEGTTIIIPIP 97
+G ++ IP
Sbjct: 177 LDGQRLVASIP 187
>WB|WBGene00020625 [details] [associations]
symbol:mrrf-1 species:6239 "Caenorhabditis elegans"
[GO:0006412 "translation" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR002661
Pfam:PF01765 GO:GO:0005739 GO:GO:0040010 GO:GO:0006412
Gene3D:3.30.1360.40 InterPro:IPR024946 EMBL:FO080916 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 PIR:T29207
RefSeq:NP_491262.2 ProteinModelPortal:P91478 SMR:P91478
STRING:P91478 PaxDb:P91478 EnsemblMetazoa:T20F5.3.1
EnsemblMetazoa:T20F5.3.2 GeneID:171976 KEGG:cel:CELE_T20F5.3
UCSC:T20F5.3 CTD:171976 WormBase:T20F5.3 eggNOG:NOG287229
GeneTree:ENSGT00390000005084 InParanoid:P91478 OMA:HAAEQRG
NextBio:873493 InterPro:IPR016001 PANTHER:PTHR20982:SF2
Uniprot:P91478
Length = 238
Score = 94 (38.1 bits), Expect = 0.00027, P = 0.00027
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 31 ESLKVEFEDD-EYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89
E + V+ E+ + L +A+++ K+P ++IN P I A+ S +N+ PQQEG
Sbjct: 89 EDVMVKLENGKDKPLSMIARVTLKSPLMIMINFQDNPSAIKAAKLAIQKSTLNVTPQQEG 148
Query: 90 TTIIIPIP 97
+ + +P
Sbjct: 149 AVLYVNVP 156
>TIGR_CMR|SPO_1664 [details] [associations]
symbol:SPO_1664 "ribosome recycling factor" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006412 "translation" evidence=ISS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661 Pfam:PF01765
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 HOGENOM:HOG000040143 TIGRFAMs:TIGR00496
OMA:VMVEYYG ProtClustDB:PRK00083 RefSeq:YP_166903.1
ProteinModelPortal:Q5LSV2 GeneID:3193529 KEGG:sil:SPO1664
PATRIC:23376653 Uniprot:Q5LSV2
Length = 187
Score = 90 (36.7 bits), Expect = 0.00042, P = 0.00042
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 30 IESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQQEG 89
+E ++VE + + ++ P+ + IN+ ++ KA+ +SG+ +NPQ G
Sbjct: 40 LEPIQVEAYGQMTPINQIGTVNVPEPRMVTINVWD-KSMVGKVEKAIRESGLGINPQLNG 98
Query: 90 TTIIIPIPK 98
T I++PIP+
Sbjct: 99 TIIMLPIPE 107
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 98 98 0.00091 102 3 11 22 0.41 30
29 0.45 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 493 (52 KB)
Total size of DFA: 94 KB (2069 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:03
No. of threads or processors used: 24
Search cpu time: 12.15u 0.08s 12.23t Elapsed: 00:00:26
Total cpu time: 12.15u 0.08s 12.23t Elapsed: 00:00:29
Start: Thu Aug 15 14:08:04 2013 End: Thu Aug 15 14:08:33 2013