RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9114
         (98 letters)



>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus
          musculus), mitochondrial [TaxId: 10090]}
          Length = 84

 Score = 62.5 bits (152), Expect = 4e-15
 Identities = 29/72 (40%), Positives = 47/72 (65%)

Query: 27 PGAIESLKVEFEDDEYVLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMNPQ 86
             ++ + V   D +  L  + QIS K+P+ +++NM+SFP+     +KA+ +SGMN+NP+
Sbjct: 5  SSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPE 64

Query: 87 QEGTTIIIPIPK 98
           EGT I +PIPK
Sbjct: 65 VEGTLIRVPIPK 76


>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 338

 Score = 26.7 bits (59), Expect = 0.39
 Identities = 7/42 (16%), Positives = 18/42 (42%)

Query: 43  VLQDLAQISRKNPKTLIINMSSFPQLIPVTMKALVDSGMNMN 84
           V+  + +      + LII +S+    +   +  LV   +++ 
Sbjct: 66  VVSSVEKAKEMGAEVLIIGVSNPGGYLEEQIATLVKKALSLG 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,078
Number of extensions: 13593
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 4
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)