BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9115
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RKI9|RRFM_RAT Ribosome-recycling factor, mitochondrial OS=Rattus norvegicus
GN=Mrrf PE=2 SV=1
Length = 262
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRE L K AK K KEN+R ++ N K K+K+K+ S+D +R + +Q
Sbjct: 185 VTREHREMLVKLAKQNTNKAKENLRKVRTNAMNKLKKSKDKT---SEDTIRLIEKQ 237
>sp|Q9D6S7|RRFM_MOUSE Ribosome-recycling factor, mitochondrial OS=Mus musculus GN=Mrrf
PE=1 SV=1
Length = 262
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRE L K AK K KEN+R ++ N K K+K+K+ S+D +R + +Q
Sbjct: 185 VTREHREMLVKLAKQNTNKAKENLRKVRTNAMNKLKKSKDKT---SEDTIRLIEKQ 237
>sp|B9KE24|RRF_CAMLR Ribosome-recycling factor OS=Campylobacter lari (strain RM2100 /
D67 / ATCC BAA-1060) GN=frr PE=3 SV=1
Length = 185
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVR 73
+T+E RE +K+AKA+ K K IR+I+ VK EK + +S+D+ +
Sbjct: 105 MTREQREENAKSAKAMGEKAKVAIRNIRKDANDAVKKLEKDKAISEDEAK 154
>sp|Q4L5W1|RRF_STAHJ Ribosome-recycling factor OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=frr PE=3 SV=1
Length = 184
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSE 77
+T+E R+ L KN K + K +IR+I+ +K EK+ +++DD+RS +E
Sbjct: 104 LTEERRKELVKNVKKIGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTE 157
>sp|P56398|RRF_HELPY Ribosome-recycling factor OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=frr PE=3 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ ++K+AKA+ K K +R+I+ VK EK + +S+D+ + EQ
Sbjct: 105 MTSEQRKLIAKDAKAMGEKAKVAVRNIRQDANNQVKKLEKDKEISEDESKKAQEQ 159
>sp|B6JN96|RRF_HELP2 Ribosome-recycling factor OS=Helicobacter pylori (strain P12)
GN=frr PE=3 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ ++K+AKA+ K K +R+I+ VK EK + +S+D+ + EQ
Sbjct: 105 MTSEQRKLIAKDAKAMGEKAKVAVRNIRQDANNQVKKLEKDKEISEDESKKAQEQ 159
>sp|Q1CS05|RRF_HELPH Ribosome-recycling factor OS=Helicobacter pylori (strain HPAG1)
GN=frr PE=3 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ ++K+AKA+ K K +R+I+ VK EK + +S+D+ + EQ
Sbjct: 105 MTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKVKKLEKDKEISEDESKKAQEQ 159
>sp|Q17Z48|RRF_HELAH Ribosome-recycling factor OS=Helicobacter acinonychis (strain
Sheeba) GN=frr PE=3 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ ++K+AKA+ K K +R+I+ VK EK + +S+D+ + EQ
Sbjct: 105 MTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKVKKLEKDKEISEDESKKAQEQ 159
>sp|Q9PIR0|RRF_CAMJE Ribosome-recycling factor OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=frr PE=3 SV=2
Length = 185
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVR 73
+T+E RE K AKA+ K K +IR+I+ VK EK + +S+D+ +
Sbjct: 105 MTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAK 154
>sp|A1VXV6|RRF_CAMJJ Ribosome-recycling factor OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=frr PE=3 SV=1
Length = 185
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVR 73
+T+E RE K AKA+ K K +IR+I+ VK EK + +S+D+ +
Sbjct: 105 MTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAK 154
>sp|A7H1T3|RRF_CAMJD Ribosome-recycling factor OS=Campylobacter jejuni subsp. doylei
(strain ATCC BAA-1458 / RM4099 / 269.97) GN=frr PE=3
SV=1
Length = 185
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVR 73
+T+E RE K AKA+ K K +IR+I+ VK EK + +S+D+ +
Sbjct: 105 MTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAK 154
>sp|A8FK24|RRF_CAMJ8 Ribosome-recycling factor OS=Campylobacter jejuni subsp. jejuni
serotype O:6 (strain 81116 / NCTC 11828) GN=frr PE=3
SV=1
Length = 185
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVR 73
+T+E RE K AKA+ K K +IR+I+ VK EK + +S+D+ +
Sbjct: 105 MTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAK 154
>sp|Q5HWM8|RRF_CAMJR Ribosome-recycling factor OS=Campylobacter jejuni (strain RM1221)
GN=frr PE=3 SV=1
Length = 185
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVR 73
+T+E RE K AKA+ K K +IR+I+ VK EK + +S+D+ +
Sbjct: 105 MTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAK 154
>sp|B2UV20|RRF_HELPS Ribosome-recycling factor OS=Helicobacter pylori (strain Shi470)
GN=frr PE=3 SV=1
Length = 185
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ ++K+AKA+ K K +R+I+ +K EK + +S+D+ + EQ
Sbjct: 105 MTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKIKKLEKDKEISEDESKKAQEQ 159
>sp|Q7VJ10|RRF_HELHP Ribosome-recycling factor OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=frr PE=3 SV=1
Length = 185
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T+E R+ ++KNA+++ K K IR+I+ +K EK + +++D+ + E+
Sbjct: 105 MTQEQRKEIAKNARSMGEKAKVAIRNIRQDANNAIKKLEKDKSITEDENKKALEE 159
>sp|Q0VCQ4|RRFM_BOVIN Ribosome-recycling factor, mitochondrial OS=Bos taurus GN=MRRF PE=2
SV=1
Length = 262
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRE L K AK K K+++R ++ N K K+K+K+ S+D +R + +Q
Sbjct: 185 VTREHREMLVKLAKQNTNKAKDSLRKVRTNAINKVKKSKDKA---SEDTIRLIEKQ 237
>sp|B5Z8Q1|RRF_HELPG Ribosome-recycling factor OS=Helicobacter pylori (strain G27)
GN=frr PE=3 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ ++K+AKA+ K K +R+ + VK EK + +S+D+ + EQ
Sbjct: 105 MTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQ 159
>sp|B1XJ13|RRF_SYNP2 Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=frr PE=3 SV=1
Length = 182
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSE 77
+TKE R+ L K A L + K +R+I+ V+ +EK+ +S+D+ RS+ +
Sbjct: 102 LTKERRQELVKTAGKLAEEGKVALRNIRRDAIDDVRKQEKNSDISEDESRSLQD 155
>sp|Q9ZJX1|RRF_HELPJ Ribosome-recycling factor OS=Helicobacter pylori (strain J99)
GN=frr PE=3 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ ++K+AKA+ K K +R+ + VK EK + +S+D+ + EQ
Sbjct: 105 MTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQ 159
>sp|C4ZA73|RRF_EUBR3 Ribosome-recycling factor OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=frr PE=3 SV=1
Length = 184
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQS 79
+T+E R+ L+K+ K + K +R+I+ ++K K EG+S+D+++ + + +
Sbjct: 104 LTEERRKDLAKDIKKKGEEAKVAVRNIRRDAIDSIKKTGKEEGISEDEIKGLEDDA 159
>sp|A1VFB2|RRF_DESVV Ribosome-recycling factor OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=frr PE=3 SV=1
Length = 186
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSE 77
+T+E R+ L K A+ + K +R+++ + +K EK++ LS+DD+R E
Sbjct: 106 LTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQE 159
>sp|Q72DQ9|RRF_DESVH Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=frr PE=3
SV=1
Length = 186
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSE 77
+T+E R+ L K A+ + K +R+++ + +K EK++ LS+DD+R E
Sbjct: 106 LTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQE 159
>sp|C5CF34|RRF_KOSOT Ribosome-recycling factor OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=frr PE=3 SV=1
Length = 185
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 23 VVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+ T E RE K +K + K K +R+I+ K K EK++ +++DD+R E+
Sbjct: 104 IPTTEQREKWVKLSKEIAEKGKIAVRNIRRDVLKEAKEMEKNKEMTEDDLRRFEEE 159
>sp|A7I0C2|RRF_CAMHC Ribosome-recycling factor OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=frr PE=3
SV=1
Length = 185
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVR 73
+T E R+ +K AKA+ K K +IR+I+ VK EK + +S+D+ +
Sbjct: 105 MTTEQRKENAKKAKAMGEKAKVSIRNIRKDANDGVKKLEKDKSISEDEAK 154
>sp|Q8CSU0|RRF_STAES Ribosome-recycling factor OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=frr PE=3 SV=1
Length = 184
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 20 SSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRS 74
S +T+E R+ L K K + K +IR+I+ +K EK+ +++DD+RS
Sbjct: 100 SVPALTEERRKELVKEVKKIGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRS 154
>sp|Q5HPT2|RRF_STAEQ Ribosome-recycling factor OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=frr PE=3 SV=1
Length = 184
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 20 SSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRS 74
S +T+E R+ L K K + K +IR+I+ +K EK+ +++DD+RS
Sbjct: 100 SVPALTEERRKELVKEVKKIGEDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRS 154
>sp|Q96E11|RRFM_HUMAN Ribosome-recycling factor, mitochondrial OS=Homo sapiens GN=MRRF
PE=1 SV=1
Length = 262
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRE L K AK K K+++R ++ K K+ + +S+D +R + +Q
Sbjct: 185 VTREHREMLVKLAKQNTNKAKDSLRKVRTNSMN--KLKKSKDTVSEDTIRLIEKQ 237
>sp|B8DG13|RRF_LISMH Ribosome-recycling factor OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=frr PE=3 SV=1
Length = 185
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSE 77
+T+E R+ L K K + K +R+I+ + + +K EKS +++DD+RS E
Sbjct: 105 LTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKSGDITEDDLRSYGE 158
>sp|O30169|CAS5_ARCFU CRISPR-associated protein Cas5 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=cas5 PE=3 SV=1
Length = 228
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 39 LFVKCKENIRDIQNKYTKTVKNKEKSEGLSQD-----DVRSVSEQSAFESYHGF 87
L+VKC E I + K + +KE +E +S++ V+ +S+++ FE + +
Sbjct: 142 LYVKCIEKINEPPKSAIKAIADKEFAEAISKEPYIVYPVKDISKKAKFEQINPY 195
>sp|Q044C7|RRF_LACGA Ribosome-recycling factor OS=Lactobacillus gasseri (strain ATCC
33323 / DSM 20243) GN=frr PE=3 SV=1
Length = 185
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ ++K L K K +R+++ T+K +EK+ +++D+ RS+ +Q
Sbjct: 105 LTGERRQEIAKQVGKLAEKGKIAVRNVRRDAMDTLKRQEKNGDITEDEQRSLEKQ 159
>sp|P74456|RRF_SYNY3 Ribosome-recycling factor OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=frr PE=3 SV=1
Length = 182
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ L K A L + K IR+I+ V+ +EK+ +S+D+ R + E+
Sbjct: 102 LTAERRKELVKVAGKLAEEGKVAIRNIRRDAVDEVRKQEKNSDISEDEARDLQEE 156
>sp|P61305|RRF_LACJO Ribosome-recycling factor OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=frr PE=3 SV=1
Length = 185
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ ++K L K K +R+++ T+K +EK +++D+ RS+ +Q
Sbjct: 105 LTGERRQEIAKQVGKLAEKGKIAVRNVRRDAMDTLKRQEKDGDITEDEQRSLEKQ 159
>sp|B9EBD9|RRF_MACCJ Ribosome-recycling factor OS=Macrococcus caseolyticus (strain
JCSC5402) GN=frr PE=3 SV=1
Length = 185
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFES 83
+T+E R+ L K AK K IR+I+ +K EK+ +++DD++S S+ E+
Sbjct: 105 LTEERRKELVKEAKKEAENSKIAIRNIRRDANDALKKAEKAGDITEDDLKSFSDDVQAET 164
>sp|Q2JHW2|RRF_SYNJB Ribosome-recycling factor OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=frr PE=3 SV=1
Length = 182
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSV 75
+T+E R+ LSK L + + +IR+I+ +V+ +EK+ LS+D+ +S+
Sbjct: 102 LTEERRKELSKQVAKLAEEGRVSIRNIRRDGIDSVRKREKNGELSEDESKSL 153
>sp|Q8F143|RRF_LEPIN Ribosome-recycling factor OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=frr
PE=3 SV=1
Length = 184
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ L+K K+ + K IR+I+ + +K + +EG+SQD+++SV +Q
Sbjct: 106 LTGERRKELAKVVKSKSEEKKVAIRNIRRDAMEDLK--KHTEGMSQDEIKSVQDQ 158
>sp|Q72U11|RRF_LEPIC Ribosome-recycling factor OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=frr PE=3 SV=1
Length = 184
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T E R+ L+K K+ + K IR+I+ + +K + +EG+SQD+++SV +Q
Sbjct: 106 LTGERRKELAKVVKSKSEEKKVAIRNIRRDAMEDLK--KHTEGMSQDEIKSVQDQ 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,245,456
Number of Sequences: 539616
Number of extensions: 1002424
Number of successful extensions: 3474
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 3305
Number of HSP's gapped (non-prelim): 199
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)