Query psy9115
Match_columns 96
No_of_seqs 100 out of 1002
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 19:20:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lhp_S 4E10_D0_1ISEA_004_N (T9 100.0 1.5E-28 5.2E-33 174.8 7.8 71 16-89 37-107 (123)
2 1dd5_A Ribosome recycling fact 99.9 3.7E-28 1.3E-32 181.1 7.1 74 15-89 96-169 (185)
3 1wqg_A Ribosome recycling fact 99.9 4.4E-28 1.5E-32 180.5 7.4 74 15-89 96-169 (185)
4 1is1_A Ribosome recycling fact 99.9 4.1E-28 1.4E-32 180.7 7.2 74 15-89 96-169 (185)
5 1ise_A Ribosome recycling fact 99.9 4.2E-28 1.4E-32 180.8 6.9 74 15-89 96-169 (185)
6 4gfq_A Ribosome-recycling fact 99.9 7.4E-28 2.5E-32 182.9 7.0 75 14-89 119-193 (209)
7 1eh1_A Ribosome recycling fact 99.9 4.3E-28 1.5E-32 180.8 5.3 74 15-89 97-170 (185)
8 3lf9_A 4E10_D0_1IS1A_001_C (T1 99.9 6E-27 2.1E-31 166.3 7.8 68 21-89 30-97 (121)
9 1ge9_A Ribosome recycling fact 99.9 1.4E-26 4.9E-31 172.4 6.8 71 15-89 98-168 (184)
10 1wih_A Mitochondrial ribosome 94.9 0.0009 3.1E-08 44.3 -3.4 16 15-30 68-83 (84)
11 3onj_A T-snare VTI1; helix, HA 86.9 3.8 0.00013 26.6 7.3 56 21-83 24-93 (97)
12 1l6x_B Minimized B-domain of p 86.3 0.47 1.6E-05 26.9 2.2 22 17-38 11-32 (34)
13 1zda_A Mini protein A domain, 80.2 0.56 1.9E-05 27.1 0.9 20 18-37 17-36 (38)
14 1vcs_A Vesicle transport throu 77.5 8.9 0.00031 25.0 6.3 56 21-83 28-94 (102)
15 3ff5_A PEX14P, peroxisomal bio 76.2 3.8 0.00013 24.9 3.9 50 22-76 2-51 (54)
16 3lay_A Zinc resistance-associa 75.1 19 0.00065 25.9 8.1 61 22-83 66-126 (175)
17 3tuf_A Stage III sporulation p 73.5 8 0.00027 28.8 5.8 48 36-83 81-128 (197)
18 3qwo_C Motavizumab epitope sca 62.4 4.9 0.00017 24.9 2.2 25 18-42 13-37 (57)
19 3fxb_A Trap dicarboxylate tran 51.3 29 0.001 25.9 5.4 66 23-89 236-304 (326)
20 1ug7_A 2610208M17RIK protein; 50.9 53 0.0018 23.1 6.3 60 21-94 59-118 (128)
21 1dee_G Immunoglobulin G bindin 45.7 13 0.00044 22.8 2.1 21 18-38 12-32 (54)
22 3nr7_A DNA-binding protein H-N 44.9 31 0.0011 22.3 4.1 41 24-73 39-79 (86)
23 2w84_A Peroxisomal membrane pr 44.5 11 0.00039 24.0 1.8 48 28-80 13-60 (70)
24 4e81_A Chaperone protein DNAK; 42.8 92 0.0031 22.4 6.8 62 22-83 117-185 (219)
25 1njg_A DNA polymerase III subu 40.9 53 0.0018 21.1 4.8 20 16-35 177-196 (250)
26 3boq_A Transcriptional regulat 40.3 44 0.0015 21.1 4.3 28 65-93 132-159 (160)
27 1usp_A Organic hydroperoxide r 37.9 19 0.00066 23.6 2.3 23 18-40 99-121 (139)
28 1zl8_A LIN-7; heterodimer, alp 37.3 41 0.0014 20.4 3.4 32 48-80 7-38 (53)
29 2ql8_A Putative redox protein; 35.2 19 0.00065 23.9 1.9 24 17-40 98-121 (143)
30 1qwi_A OSMC, osmotically induc 34.9 23 0.0008 23.4 2.3 23 18-40 103-125 (143)
31 2chg_A Replication factor C sm 34.6 83 0.0028 20.0 4.9 20 16-35 153-172 (226)
32 3axj_A GM27569P, translin; tra 34.2 1.2E+02 0.004 22.6 6.3 26 27-52 36-61 (249)
33 3m20_A 4-oxalocrotonate tautom 33.9 40 0.0014 19.1 3.0 27 16-42 2-28 (62)
34 2bjo_A Organic hydroperoxide r 33.2 26 0.00088 22.8 2.3 23 18-40 97-119 (136)
35 1n2f_A Organic hydroperoxide r 32.9 26 0.00088 23.1 2.3 23 18-40 102-124 (142)
36 3u65_B TP33 protein; tetratric 32.7 1.1E+02 0.0039 22.8 6.1 61 23-83 239-300 (328)
37 3gm3_A Protein tyrosine kinase 32.5 32 0.0011 24.8 2.8 28 18-45 106-133 (153)
38 4b9q_A Chaperone protein DNAK; 31.1 2E+02 0.0068 23.3 7.7 62 22-83 505-573 (605)
39 2hpg_A ABC transporter, peripl 31.0 55 0.0019 24.3 4.1 64 23-90 240-308 (327)
40 2lr2_A Immunoglobulin G-bindin 31.0 35 0.0012 22.6 2.6 20 19-38 30-49 (88)
41 2hzl_A Trap-T family sorbitol/ 30.9 1.6E+02 0.0055 21.8 6.7 63 23-89 256-322 (365)
42 2qsb_A UPF0147 protein TA0600; 30.2 31 0.0011 22.9 2.3 32 48-82 30-61 (89)
43 2pfz_A Putative exported prote 30.1 1.5E+02 0.0053 21.3 7.4 63 23-89 219-285 (301)
44 1zxg_A Immunoglobulin G bindin 29.6 22 0.00074 22.1 1.3 21 18-38 16-36 (59)
45 3kdw_A Putative sugar binding 29.4 51 0.0018 25.1 3.6 17 21-37 150-166 (221)
46 2kzi_A Engineered protein, ZHE 29.3 35 0.0012 21.8 2.3 20 19-38 29-48 (70)
47 2qzg_A Conserved uncharacteriz 28.8 33 0.0011 22.9 2.2 32 48-82 34-65 (94)
48 3zzp_A TS9, ribosomal protein 28.8 64 0.0022 20.0 3.5 23 20-42 52-74 (77)
49 1zb9_A OHR, organic hydroperox 28.4 34 0.0012 22.6 2.3 23 18-40 103-125 (143)
50 1nye_A Osmotically inducible p 27.7 35 0.0012 23.3 2.3 23 18-40 122-144 (162)
51 2qyw_A Vesicle transport throu 27.3 96 0.0033 20.0 4.3 29 21-49 38-67 (102)
52 2pfy_A Putative exported prote 25.7 1.9E+02 0.0064 20.8 7.2 63 23-89 220-286 (301)
53 2y7c_A Type-1 restriction enzy 25.4 81 0.0028 23.2 4.1 24 18-43 369-392 (464)
54 1ukk_A Osmotically inducible p 25.2 24 0.00081 23.4 1.0 23 18-40 101-123 (142)
55 1j1j_A Translin; testis/brain 24.9 89 0.0031 23.0 4.2 27 27-53 31-57 (240)
56 3eb2_A Putative dihydrodipicol 23.8 67 0.0023 24.0 3.4 38 3-43 258-295 (300)
57 3m21_A Probable tautomerase HP 23.8 63 0.0021 18.4 2.6 27 16-42 2-32 (67)
58 2g9w_A Conserved hypothetical 23.5 1.5E+02 0.0051 18.9 5.4 69 6-86 54-125 (138)
59 1j1d_C Troponin I, TNI; THIN f 23.2 1.9E+02 0.0065 20.0 7.1 56 22-77 9-68 (133)
60 3cje_A OSMC-like protein; stru 23.2 48 0.0016 22.4 2.3 23 18-40 119-142 (167)
61 4gof_A Small glutamine-rich te 22.5 66 0.0023 19.1 2.5 33 55-88 10-42 (52)
62 2vpn_A Periplasmic substrate b 22.5 1.9E+02 0.0065 20.9 5.6 65 23-89 222-290 (316)
63 3si9_A DHDPS, dihydrodipicolin 22.4 83 0.0028 23.8 3.7 32 4-38 278-309 (315)
64 3qb5_K Translin-associated pro 22.2 99 0.0034 23.5 4.1 26 27-52 51-76 (290)
65 2xwv_A Sialic acid-binding per 21.8 1.4E+02 0.0049 21.8 4.8 63 22-88 224-287 (312)
66 2ee7_A Sperm flagellar protein 21.8 12 0.0004 25.8 -1.1 31 22-54 10-40 (127)
67 4fxi_A MRNA interferase RELE; 21.6 1.1E+02 0.0038 19.3 3.7 29 67-95 18-46 (95)
68 3itf_A Periplasmic adaptor pro 21.2 1.6E+02 0.0054 20.3 4.7 56 23-82 45-100 (145)
69 1u00_A HSC66, chaperone protei 20.9 2.3E+02 0.0079 20.1 7.6 65 22-90 114-187 (227)
70 2r91_A 2-keto-3-deoxy-(6-phosp 20.7 65 0.0022 23.8 2.7 36 4-42 248-283 (286)
71 2kl8_A OR15; structural genomi 20.6 68 0.0023 20.7 2.5 25 19-43 44-68 (85)
72 3daq_A DHDPS, dihydrodipicolin 20.4 1.2E+02 0.0042 22.4 4.2 34 3-39 255-288 (292)
73 3uk6_A RUVB-like 2; hexameric 20.4 1.7E+02 0.0058 20.9 4.9 20 15-34 250-269 (368)
74 3bos_A Putative DNA replicatio 20.3 1.4E+02 0.0049 19.4 4.1 20 17-36 167-186 (242)
75 1j1e_C Troponin I, TNI; THIN f 20.2 2.6E+02 0.0088 20.4 6.5 56 22-77 9-68 (180)
No 1
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=99.95 E-value=1.5e-28 Score=174.84 Aligned_cols=71 Identities=10% Similarity=0.005 Sum_probs=69.0
Q ss_pred cCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 16 FQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 16 ~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
-++|+|| |+|||++|||+|++++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |.||+
T Consensus 37 ~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLT-DkyIk 107 (123)
T 3lhp_S 37 AVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLT-DAAIK 107 (123)
T ss_dssp HHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHH-HHHHH
T ss_pred eEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH-HHHHH
Confidence 3789999 99999999999999999999999999999999999999999999999999999999999 99986
No 2
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=99.95 E-value=3.7e-28 Score=181.10 Aligned_cols=74 Identities=24% Similarity=0.287 Sum_probs=72.0
Q ss_pred ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus 96 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~ 169 (185)
T 1dd5_A 96 NVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLT-DEFIE 169 (185)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 99986
No 3
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=99.95 E-value=4.4e-28 Score=180.55 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=72.0
Q ss_pred ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus 96 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~ 169 (185)
T 1wqg_A 96 ALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTT-HQYVT 169 (185)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999999 99986
No 4
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=99.95 E-value=4.1e-28 Score=180.72 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=71.9
Q ss_pred ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus 96 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~ 169 (185)
T 1is1_A 96 TIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLT-DVAVK 169 (185)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999 99986
No 5
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=99.95 E-value=4.2e-28 Score=180.85 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=71.9
Q ss_pred ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus 96 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~ 169 (185)
T 1ise_A 96 SDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLT-DAAIK 169 (185)
T ss_dssp SEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999 99986
No 6
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=99.94 E-value=7.4e-28 Score=182.85 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=72.5
Q ss_pred cccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 14 DKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 14 ~~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
...++||||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus 119 G~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklT-d~~i~ 193 (209)
T 4gfq_A 119 GTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKET-DKYIA 193 (209)
T ss_dssp SSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred CCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH-HHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999 99986
No 7
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=99.94 E-value=4.3e-28 Score=180.77 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=71.8
Q ss_pred ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++|++.||||+.++++++||++| |+||+
T Consensus 97 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQklt-d~~i~ 170 (185)
T 1eh1_A 97 DALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKIT-DEFIA 170 (185)
T ss_dssp TEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-HHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH-HHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999 99986
No 8
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=99.94 E-value=6e-27 Score=166.32 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=66.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 21 SFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 21 iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
=.|||+|||++|||+|++++|+|||||||||||||+.||+++|++.||||+.++++++||++| |.||+
T Consensus 30 ~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLT-DkyIk 97 (121)
T 3lf9_A 30 GGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLT-DVAVK 97 (121)
T ss_dssp SSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHH-HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHH-HHHHH
Confidence 368999999999999999999999999999999999999999999999999999999999999 99986
No 9
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=99.93 E-value=1.4e-26 Score=172.43 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=68.2
Q ss_pred ccCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 15 KFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 15 ~~~~i~iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
..++|+||+||+|||++|||.||+++|+|||+||||||++|+.||+++ + ||||+.++++++||++| |+||+
T Consensus 98 ~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~--k-iseD~~k~~e~~iQklt-d~~i~ 168 (184)
T 1ge9_A 98 NVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE--G-ISEDEKKRALERLQKLT-DKYID 168 (184)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST--T-CCHHHHHHHHHHHHHHH-HHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CChhHHHHHHHHHHHHH-HHHHH
Confidence 468999999999999999999999999999999999999999999986 4 99999999999999999 99986
No 10
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=94.92 E-value=0.0009 Score=44.28 Aligned_cols=16 Identities=13% Similarity=-0.089 Sum_probs=14.4
Q ss_pred ccCccCCCCCCHHHHH
Q psy9115 15 KFQDQSSFVVTKEHRE 30 (96)
Q Consensus 15 ~~~~i~iP~LTeErRk 30 (96)
..++|+||+||+|||+
T Consensus 68 ~~Iri~iP~lTeErR~ 83 (84)
T 1wih_A 68 TLIRVPIPKVTSGPSS 83 (84)
T ss_dssp TEEEEECCCSSCSSCC
T ss_pred CEEEEeCCCCChhccC
Confidence 4689999999999996
No 11
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=86.92 E-value=3.8 Score=26.61 Aligned_cols=56 Identities=7% Similarity=0.062 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHH------hhHHHHHHHhhhhcCCCChhhhhh-hHHHHHHHh
Q psy9115 21 SFVVTKEHRESLSKNAKALFVKCKEN-------IRDI------QNKYTKTVKNKEKSEGLSQDDVRS-VSEQSAFES 83 (96)
Q Consensus 21 iP~LTeErRkeLVK~aKk~~EeaKva-------IRNI------RRda~~~iKK~eK~~~iSEDd~k~-~e~~IQklT 83 (96)
+|.++.|.|+.+++.+....++|..- +||+ |..++.+|+... -++.. ++.++++++
T Consensus 24 ~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk-------~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 24 APSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK-------KTIQSDIKRPLQSLV 93 (97)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------HHHHHHTHHHHHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 57899999999999998888888754 4555 777777777763 24555 788888888
No 12
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=86.32 E-value=0.47 Score=26.86 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=18.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHH
Q psy9115 17 QDQSSFVVTKEHRESLSKNAKA 38 (96)
Q Consensus 17 ~~i~iP~LTeErRkeLVK~aKk 38 (96)
.-+.+|-||||.|...++.+|.
T Consensus 11 evLh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 11 EALHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHhHHHHHhc
Confidence 3467899999999999998874
No 13
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=80.18 E-value=0.56 Score=27.13 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=17.7
Q ss_pred ccCCCCCCHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAK 37 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aK 37 (96)
-+.+|-||||.|...++.+|
T Consensus 17 vLh~~nLtEeQrn~yI~slk 36 (38)
T 1zda_A 17 ALHDPNLNEEQRNAKIKSIR 36 (38)
T ss_dssp HHSCSSSCTTHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHhHHHHhh
Confidence 46899999999999998876
No 14
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=77.47 E-value=8.9 Score=25.00 Aligned_cols=56 Identities=5% Similarity=0.175 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHh
Q psy9115 21 SFVVTKEHRESLSKNAKALFVKCKENIRD-----------IQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFES 83 (96)
Q Consensus 21 iP~LTeErRkeLVK~aKk~~EeaKvaIRN-----------IRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT 83 (96)
+|.++-|.|+.++..|....++|..-|+. .|..++.+|+... -++..++.+++++.
T Consensus 28 i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk-------~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 28 VPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYK-------QEMGKLETDFKRSR 94 (102)
T ss_dssp GGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHH-------HHHHHHHHHTHHHH
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 67888899999999999999999988876 5677777777663 24455777777777
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=76.20 E-value=3.8 Score=24.91 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhH
Q psy9115 22 FVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVS 76 (96)
Q Consensus 22 P~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e 76 (96)
|.=+..-|++||..|.++..+-+| |.-...+=..+.+++++|++++..+-
T Consensus 2 ~~~~~~~Re~li~~Av~FL~dp~V-----~~sp~~~K~~FL~sKGLt~~EI~~Al 51 (54)
T 3ff5_A 2 PLGSPEFREPLIATAVKFLQNSRV-----RQSPLATRRAFLKKKGLTDEEIDLAF 51 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHCTTG-----GGSCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHhCChhh-----hcCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 556788999999999999988754 44444444445556789999987653
No 16
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=75.14 E-value=19 Score=25.94 Aligned_cols=61 Identities=8% Similarity=0.051 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHh
Q psy9115 22 FVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFES 83 (96)
Q Consensus 22 P~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT 83 (96)
-.||+|.+.++-+.-.++..+... +|.-......++..+.-.+..++..+..+.++|+++.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~-Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr 126 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSA-LRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLG 126 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 359999999987776666555432 2222222334555555456789999999999988876
No 17
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=73.47 E-value=8 Score=28.84 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHh
Q psy9115 36 AKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFES 83 (96)
Q Consensus 36 aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT 83 (96)
...+|.++|...-+.|...++.|+....+..+|++....+.+++..|+
T Consensus 81 ~~~yFae~RL~REq~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt 128 (197)
T 3tuf_A 81 DDDLFTTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALS 128 (197)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999888899999999999999998
No 18
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=62.41 E-value=4.9 Score=24.93 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=20.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALFVK 42 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~Ee 42 (96)
-+.+|-||||.|...++.+|.--..
T Consensus 13 il~lpnLtEeqRn~yI~slkdDPs~ 37 (57)
T 3qwo_C 13 IANLPNLNEEQRSAFLSSINDDPSQ 37 (57)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHCGGG
T ss_pred HHcCCCcchhhccchHhhhccCcch
Confidence 3578999999999999988764433
No 19
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=51.29 E-value=29 Score=25.86 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh---hhcCCCChhhhhhhHHHHHHHhhccccc
Q psy9115 23 VVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNK---EKSEGLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 23 ~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~---eK~~~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
.|++|.|+-|...+...........+..-.++++.++.. ..=-.+|+++...+.+-.+.+. ++|.+
T Consensus 236 ~L~~e~q~~i~~aa~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~a~~~v~-~~~~~ 304 (326)
T 3fxb_A 236 GLSAEDQQLVQNAALAAYDHTVVYQQQAADTELAKIMEAKPEMQVTVLTDEQRSCFKEAAAEVE-AKFIE 304 (326)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHHH-HHHHH
Confidence 588999999999888887777777766666666666632 0001268888888998888887 77764
No 20
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=50.90 E-value=53 Score=23.08 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHHhhcccccCCCCC
Q psy9115 21 SFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFISGEPLD 94 (96)
Q Consensus 21 iP~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~~~~~~ 94 (96)
=+++|+++.+-|.|.|--+. .|-++.. ...-..+|+-++.+.++.-++.+. + |.+--|+|
T Consensus 59 ~~~fte~qkk~i~KiatcL~---------lRsk~Lq---~~~~~~gi~led~K~l~~~lk~ll-~-~~~eFP~d 118 (128)
T 1ug7_A 59 NSEFTEEQKKTIGKIATCLE---------LRSAALQ---STQSQEEFKLEDLKKLEPILKNIL-T-YNKEFPFD 118 (128)
T ss_dssp CCSSCHHHHHHHHHHHHHHH---------HHHHHHH---CCSCCCSCCSHHHHTHHHHHHTTT-T-CCSCCSSC
T ss_pred cccccHHHHHHHHHHHHHHH---------HHHHHHH---hccCCCCCCHHHHHHHHHHHHHhc-c-cCCCCCCc
Confidence 46789998888888886554 3332221 111145799999999999999999 5 77877876
No 21
>1dee_G Immunoglobulin G binding protein A; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=45.74 E-value=13 Score=22.78 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=16.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKA 38 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk 38 (96)
-+.+|-||+|.|...++..|.
T Consensus 12 il~lp~lte~qrng~i~slkd 32 (54)
T 1dee_G 12 ILNMPNLNEAQRNGFIQSLKD 32 (54)
T ss_dssp HHHCSSSCHHHHHHHHHHHHH
T ss_pred HHcCCCcchhhhccccccccc
Confidence 357999999999887776654
No 22
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=44.89 E-value=31 Score=22.29 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhh
Q psy9115 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVR 73 (96)
Q Consensus 24 LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k 73 (96)
+.+|||++..+..+...+ |..-+.+++++-...+||-+++-
T Consensus 39 VveERree~~~~~~~~~e---------r~~Kl~~~~e~l~~~GI~~eeL~ 79 (86)
T 3nr7_A 39 VVNERREEESAAAAEVEE---------RTRKLQQYREMLIADGIDPNELL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHcCCCHHHHH
Confidence 345666665555443333 55556677777777889988864
No 23
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=44.52 E-value=11 Score=23.98 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHH
Q psy9115 28 HRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSA 80 (96)
Q Consensus 28 rRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQ 80 (96)
-|++||..|.++..+-+| |.-..++=..+.+++++|++++..+-....
T Consensus 13 ~Re~li~~Av~FLqdp~V-----~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~ 60 (70)
T 2w84_A 13 PREPLIATAVKFLQNSRV-----RQSPLATRRAFLKKKGLTDEEIDMAFQQSG 60 (70)
T ss_dssp CCHHHHHHHHHHHCSTTG-----GGSCHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCChhh-----hhCCHHHHHHHHHHcCCCHHHHHHHHHHcc
Confidence 389999999999887654 454555444555678899999987766643
No 24
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=42.84 E-value=92 Score=22.42 Aligned_cols=62 Identities=10% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHHHHhhhh--cCCCChhhhhhhHHHHHHHh
Q psy9115 22 FVVTKEHRESLSKNAKALFVKCK-----ENIRDIQNKYTKTVKNKEK--SEGLSQDDVRSVSEQSAFES 83 (96)
Q Consensus 22 P~LTeErRkeLVK~aKk~~EeaK-----vaIRNIRRda~~~iKK~eK--~~~iSEDd~k~~e~~IQklT 83 (96)
..|+++--+.+++.|.+++++=+ +..||-=..++-.+++..+ .+.+++++...++..++.+-
T Consensus 117 ~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~ 185 (219)
T 4e81_A 117 SGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALE 185 (219)
T ss_dssp CSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHH
Confidence 45999999999999988876322 2222221112222222211 23588899888888888776
No 25
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=40.89 E-value=53 Score=21.06 Aligned_cols=20 Identities=5% Similarity=-0.134 Sum_probs=16.3
Q ss_pred cCccCCCCCCHHHHHHHHHH
Q psy9115 16 FQDQSSFVVTKEHRESLSKN 35 (96)
Q Consensus 16 ~~~i~iP~LTeErRkeLVK~ 35 (96)
+..+.||+++.+...+++..
T Consensus 177 ~~~i~l~~l~~~e~~~~l~~ 196 (250)
T 1njg_A 177 CLQFHLKALDVEQIRHQLEH 196 (250)
T ss_dssp SEEEECCCCCHHHHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHH
Confidence 46789999999888887763
No 26
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=40.34 E-value=44 Score=21.13 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=18.6
Q ss_pred CCCChhhhhhhHHHHHHHhhcccccCCCC
Q psy9115 65 EGLSQDDVRSVSEQSAFESYHGFISGEPL 93 (96)
Q Consensus 65 ~~iSEDd~k~~e~~IQklT~d~yi~~~~~ 93 (96)
..+++++...+..-++++. +..-++-.+
T Consensus 132 ~~l~~~e~~~l~~~l~~l~-~~l~~~~~~ 159 (160)
T 3boq_A 132 RAVSDQDMVEASAALRGIL-ESMQTGASL 159 (160)
T ss_dssp TTCCHHHHHHHHHHHHHHH-HHC------
T ss_pred hcCCHHHHHHHHHHHHHHH-HHhhccccc
Confidence 4599999999999999988 555544443
No 27
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=37.85 E-value=19 Score=23.56 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=19.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALF 40 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~ 40 (96)
.+.+|.+++|..+.|+..|++.|
T Consensus 99 ~v~~~~~~~e~~~~l~~~a~~~C 121 (139)
T 1usp_A 99 EGHFPGLSREQAEGLMHAAHEVC 121 (139)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHC
T ss_pred EEEECCCCHHHHHHHHHHHHhhC
Confidence 56788899999999999887654
No 28
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=37.32 E-value=41 Score=20.44 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=24.3
Q ss_pred HHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHH
Q psy9115 48 RDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSA 80 (96)
Q Consensus 48 RNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQ 80 (96)
|.|.| +++-+.++.+.++++---...+++-+|
T Consensus 7 RDv~R-aiELle~lq~sgevp~~KL~aLq~VLq 38 (53)
T 1zl8_A 7 RDVQR-ILELMEHVQKTGEVNNAKLASLQQVLQ 38 (53)
T ss_dssp HHHHH-HHHHHHHHGGGSSSTHHHHHHHHHHHS
T ss_pred HHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 67776 788899998888898877766665544
No 29
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=35.23 E-value=19 Score=23.90 Aligned_cols=24 Identities=4% Similarity=-0.043 Sum_probs=19.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHH
Q psy9115 17 QDQSSFVVTKEHRESLSKNAKALF 40 (96)
Q Consensus 17 ~~i~iP~LTeErRkeLVK~aKk~~ 40 (96)
..+.+|.+++|.++.|+..|.+.|
T Consensus 98 ~~v~~~g~~~e~~~~l~~~a~~~C 121 (143)
T 2ql8_A 98 AQVMVKGVDFDTAKAFTNEIENRC 121 (143)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHHHHhcC
Confidence 356788899999999999887554
No 30
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=34.93 E-value=23 Score=23.38 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=19.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALF 40 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~ 40 (96)
.+.+|.+++|..++|+..|.+.+
T Consensus 103 ~v~~~~~~~e~~~~l~~~a~~~C 125 (143)
T 1qwi_A 103 EVAVPGIDASTFDGIIQKAKAGC 125 (143)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHS
T ss_pred EEEeCCCCHHHHHHHHHHHHccC
Confidence 46789999999999999887654
No 31
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=34.62 E-value=83 Score=19.97 Aligned_cols=20 Identities=15% Similarity=-0.180 Sum_probs=15.6
Q ss_pred cCccCCCCCCHHHHHHHHHH
Q psy9115 16 FQDQSSFVVTKEHRESLSKN 35 (96)
Q Consensus 16 ~~~i~iP~LTeErRkeLVK~ 35 (96)
|..+.||+++.+....++..
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~ 172 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLE 172 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHH
Confidence 55789999998887777654
No 32
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=34.19 E-value=1.2e+02 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9115 27 EHRESLSKNAKALFVKCKENIRDIQN 52 (96)
Q Consensus 27 ErRkeLVK~aKk~~EeaKvaIRNIRR 52 (96)
++|+.++|.++.+.-.+|.+|..+-|
T Consensus 36 d~REriik~sRdIt~~sk~~I~~Lhr 61 (249)
T 3axj_A 36 EVRENIRIVVREIEHLSKEAQIKLQI 61 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999999999999987765
No 33
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=33.91 E-value=40 Score=19.10 Aligned_cols=27 Identities=0% Similarity=-0.087 Sum_probs=20.1
Q ss_pred cCccCCCCCCHHHHHHHHHHHHHHHHH
Q psy9115 16 FQDQSSFVVTKEHRESLSKNAKALFVK 42 (96)
Q Consensus 16 ~~~i~iP~LTeErRkeLVK~aKk~~Ee 42 (96)
++.|.++..|.|..+.|++.+-....+
T Consensus 2 ~I~I~~~grt~eqK~~L~~~it~~~~~ 28 (62)
T 3m20_A 2 VLIVYGPKLDVGKKREFVERLTSVAAE 28 (62)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 345566889999999999887665543
No 34
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=33.19 E-value=26 Score=22.84 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=19.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALF 40 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~ 40 (96)
.+.+|.+++|..++|+..|.+.+
T Consensus 97 ~v~~~~~~~e~~~~l~~~a~~~C 119 (136)
T 2bjo_A 97 VVNTKDLDREKAQELVNAAHEFC 119 (136)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHHHhC
Confidence 45788999999999999998654
No 35
>1n2f_A Organic hydroperoxide resistance protein; peroxide reductase, oxidoreductase; 2.01A {Pseudomonas aeruginosa} SCOP: d.227.1.1
Probab=32.95 E-value=26 Score=23.13 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=19.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALF 40 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~ 40 (96)
.+.+|.+++|..++|+..|.+.|
T Consensus 102 ~v~~~~~~~e~~~~l~~~a~~~C 124 (142)
T 1n2f_A 102 HINLPGMEREAAEALVAAAHQVC 124 (142)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHC
T ss_pred EEEECCCCHHHHHHHHHHHHHhC
Confidence 56788999999999999887654
No 36
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=32.69 E-value=1.1e+02 Score=22.75 Aligned_cols=61 Identities=7% Similarity=0.175 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh-hcCCCChhhhhhhHHHHHHHh
Q psy9115 23 VVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKE-KSEGLSQDDVRSVSEQSAFES 83 (96)
Q Consensus 23 ~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~e-K~~~iSEDd~k~~e~~IQklT 83 (96)
.|++|.|+-|...+...........+..-.++++.+++.- +=-.+|+++...+.+-.+.+.
T Consensus 239 ~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~e~~~~~~~~~~~v~ 300 (328)
T 3u65_B 239 RIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQKAGVSIVHLTPQEIQEWRTEFAADV 300 (328)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHH
Confidence 6889999999999988888887777776666666666420 001368888888888777666
No 37
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=32.46 E-value=32 Score=24.82 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=25.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALFVKCKE 45 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~EeaKv 45 (96)
..+..+|-+|.|+.+...|.-+|-+||-
T Consensus 106 q~~~TtL~eEyrr~MLsaaH~LA~DaKN 133 (153)
T 3gm3_A 106 QNAVTSLSEECKRQMLTASHTLAVDAKN 133 (153)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999995
No 38
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=31.11 E-value=2e+02 Score=23.33 Aligned_cols=62 Identities=10% Similarity=0.144 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHHHHHHHhhhh--cCCCChhhhhhhHHHHHHHh
Q psy9115 22 FVVTKEHRESLSKNAKALFVKCK-----ENIRDIQNKYTKTVKNKEK--SEGLSQDDVRSVSEQSAFES 83 (96)
Q Consensus 22 P~LTeErRkeLVK~aKk~~EeaK-----vaIRNIRRda~~~iKK~eK--~~~iSEDd~k~~e~~IQklT 83 (96)
..|++|.-+.+++.+.+++++=+ +..||-=..++-.+++... .+.+++++...++..++.+.
T Consensus 505 ~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (605)
T 4b9q_A 505 SGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALE 573 (605)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH
Confidence 57999999999999988876532 2222221122222222211 23588999888888888776
No 39
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=30.99 E-value=55 Score=24.34 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhhhhcCC-C---ChhhhhhhHHHHHHHhhcccccC
Q psy9115 23 VVTKEHRESLSKNAKALFVKCKENIR-DIQNKYTKTVKNKEKSEG-L---SQDDVRSVSEQSAFESYHGFISG 90 (96)
Q Consensus 23 ~LTeErRkeLVK~aKk~~EeaKvaIR-NIRRda~~~iKK~eK~~~-i---SEDd~k~~e~~IQklT~d~yi~~ 90 (96)
.|++|.|+-+...+...........+ ..-.++.+.+++ .+- + |+++...+.+..+.+. ++|..+
T Consensus 240 ~L~~e~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~~l~~---~Gv~v~~~~~~~~~~~~~a~~~v~-~~~~~~ 308 (327)
T 2hpg_A 240 SLPKEYQKIIEEEMDKAGIEVSLKIMKELEEEYKQKCIE---KGMAVIPASEIDKEAFMEKAKQAY-KNLGLE 308 (327)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH---TTCEEECGGGSCHHHHHHHHHHHH-HHHTCH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEEeCChhhHHHHHHHHHHHH-HHHhcC
Confidence 57888888888877776666666655 444445555543 232 3 4777888888888887 777553
No 40
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=30.97 E-value=35 Score=22.56 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=16.2
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q psy9115 19 QSSFVVTKEHRESLSKNAKA 38 (96)
Q Consensus 19 i~iP~LTeErRkeLVK~aKk 38 (96)
+.+|-||+|.|...+...|.
T Consensus 30 l~lPNLneeQrnafiqSLkD 49 (88)
T 2lr2_A 30 LHLPNLNEEQRNAFIQSLKD 49 (88)
T ss_dssp HTCSSCCHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHhcc
Confidence 67999999999888766553
No 41
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=30.88 E-value=1.6e+02 Score=21.76 Aligned_cols=63 Identities=10% Similarity=-0.070 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC----CCChhhhhhhHHHHHHHhhccccc
Q psy9115 23 VVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSE----GLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 23 ~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~----~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
.|++|.|+-+...+...........+..-.++++.+++ .+ .+|+|+...+.+-.+.+. ++|.+
T Consensus 256 ~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~~~~~~~~~~~~~v~-~~~~~ 322 (365)
T 2hzl_A 256 GLTPTYQSLLRTACHAADANMLQLYDWKNPTAIKSLVA---QGTQLRPFSPEILQACFEAANEVY-AEMEA 322 (365)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCEEEECCHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH---CCCEEEeCCHHHHHHHHHHHHHHH-HHHHc
Confidence 48889998888887777776666665555555555543 23 146777777888787777 67654
No 42
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=30.16 E-value=31 Score=22.87 Aligned_cols=32 Identities=3% Similarity=0.017 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHH
Q psy9115 48 RDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFE 82 (96)
Q Consensus 48 RNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQkl 82 (96)
|||||-|.+.+..+.. + ++...=++-.-|..|
T Consensus 30 RNIRraA~ea~~~L~~-e--~~~~~vRAA~aIs~L 61 (89)
T 2qsb_A 30 KNVRKVAQDSKAKLSQ-E--NESLDLRCATVLSML 61 (89)
T ss_dssp HHHHHHHHHHHHHHTC-T--TSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-C--CcchhHHHHHHHHHH
Confidence 9999988888777742 2 233333444444444
No 43
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=30.13 E-value=1.5e+02 Score=21.29 Aligned_cols=63 Identities=6% Similarity=0.066 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC----CCChhhhhhhHHHHHHHhhccccc
Q psy9115 23 VVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSE----GLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 23 ~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~----~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
.|++|.|+-+...+...........+..-.++.+.+++. + .+|+++...+.+-.+.+. ++|.+
T Consensus 219 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~---G~~v~~~~~e~~~~~~~~~~~v~-~~~~~ 285 (301)
T 2pfz_A 219 ALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKN---GMAIIAPTAELKSGLTEVGKRML-DDWLK 285 (301)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCEEECCCHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEecCCHHHHHHHHHHHHHHH-HHHHH
Confidence 678899998888887777777666666555566666542 2 256777777888777776 67653
No 44
>1zxg_A Immunoglobulin G binding protein A; IGG-binding, phage display, immune system/protein binding complex; NMR {Staphylococcus aureus}
Probab=29.63 E-value=22 Score=22.11 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=16.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKA 38 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk 38 (96)
-+.+|-||+|.|...++..|.
T Consensus 16 vl~~pnltEeqrngyI~slkd 36 (59)
T 1zxg_A 16 VLNMPNLNEDQRNAFIQSLKD 36 (59)
T ss_dssp HHCSTTCCSSHHHHHHHHHHH
T ss_pred HHcCCCcchhhhccccccccc
Confidence 358999999999777766553
No 45
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=29.43 E-value=51 Score=25.09 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=13.6
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy9115 21 SFVVTKEHRESLSKNAK 37 (96)
Q Consensus 21 iP~LTeErRkeLVK~aK 37 (96)
||.||+|.+..+....+
T Consensus 150 vP~Lteeek~~I~~~L~ 166 (221)
T 3kdw_A 150 IPTLKEEEKAQIMAWLV 166 (221)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHH
Confidence 79999999988765443
No 46
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=29.35 E-value=35 Score=21.80 Aligned_cols=20 Identities=0% Similarity=0.003 Sum_probs=16.5
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q psy9115 19 QSSFVVTKEHRESLSKNAKA 38 (96)
Q Consensus 19 i~iP~LTeErRkeLVK~aKk 38 (96)
+.+|-||++.|...++..+.
T Consensus 29 L~~pnLtEeQrngfI~slkd 48 (70)
T 2kzi_A 29 ALLPNLNNQQKRAFIRSLYD 48 (70)
T ss_dssp HHCSSSCHHHHHHHHHHHHH
T ss_pred HcCCCcchhhhhcccccccc
Confidence 57999999999888777664
No 47
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=28.81 E-value=33 Score=22.94 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=19.4
Q ss_pred HHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHH
Q psy9115 48 RDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFE 82 (96)
Q Consensus 48 RNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQkl 82 (96)
|||||-|.+.+..+.. + ++...=++-.-|..|
T Consensus 34 RNIRraA~ea~~~L~~-e--~~~~~vRAAtAIs~L 65 (94)
T 2qzg_A 34 RNIRAAADNAKNALHN-E--EQELIVRSATAIQYL 65 (94)
T ss_dssp HHHHHHHHHHHHHTTC-T--TSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-C--CcchhHHHHHHHHHH
Confidence 9999988888777742 2 233333444444444
No 48
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=28.81 E-value=64 Score=20.02 Aligned_cols=23 Identities=0% Similarity=-0.093 Sum_probs=19.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q psy9115 20 SSFVVTKEHRESLSKNAKALFVK 42 (96)
Q Consensus 20 ~iP~LTeErRkeLVK~aKk~~Ee 42 (96)
-=|.|++|.++.++...+...++
T Consensus 52 l~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 52 LNPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHh
Confidence 34999999999999998887765
No 49
>1zb9_A OHR, organic hydroperoxide resistance protein; oxidoreductase; HET: PE4; 1.80A {Xylella fastidiosa} PDB: 1zb8_A*
Probab=28.42 E-value=34 Score=22.63 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=19.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALF 40 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~ 40 (96)
.+.+|.+++|..++|+..|.+.|
T Consensus 103 ~v~~~~~~~e~~~~l~~~a~~~C 125 (143)
T 1zb9_A 103 RIAVSGMERSMLQTLVDKAHRVC 125 (143)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHC
T ss_pred EEEECCCCHHHHHHHHHHHHhhC
Confidence 46788999999999999887654
No 50
>1nye_A Osmotically inducible protein C; OSMC, structural genomics, peroxiredoxin, BSGC structure funded by NIH, protein structure initiative, PSI; 2.40A {Escherichia coli} SCOP: d.227.1.1
Probab=27.70 E-value=35 Score=23.35 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=19.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALF 40 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~ 40 (96)
.|.+|.+++|..++|+..|.+.|
T Consensus 122 ~v~~~g~~~e~~~~l~~~A~~~C 144 (162)
T 1nye_A 122 EVAVPGIDASTFDGIIQKAKAGC 144 (162)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHS
T ss_pred EEEECCCCHHHHHHHHHHHHhcC
Confidence 46789999999999999887644
No 51
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.29 E-value=96 Score=19.95 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9115 21 SFVV-TKEHRESLSKNAKALFVKCKENIRD 49 (96)
Q Consensus 21 iP~L-TeErRkeLVK~aKk~~EeaKvaIRN 49 (96)
+|.+ ..|.|+.++..+....++|..-|+.
T Consensus 38 i~~~~~~e~rk~~i~~ie~~ldEA~eLl~q 67 (102)
T 2qyw_A 38 LLGTAGTEEKKKLVRDFDEKQQEANETLAE 67 (102)
T ss_dssp HHTCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 5488999999999999999887765
No 52
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=25.69 E-value=1.9e+02 Score=20.78 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCC----CChhhhhhhHHHHHHHhhccccc
Q psy9115 23 VVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEG----LSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 23 ~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~----iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
.|+++.|+-+...+...........+..-.++++.+++. +- +|+++...+.+-.+.+. ++|.+
T Consensus 220 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~---G~~v~~~~~e~~~~~~~~~~~v~-~~~~~ 286 (301)
T 2pfy_A 220 RLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARN---GMSVEPLPPQLAKELQAIGATMV-SDWSK 286 (301)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCEEEECCHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEecCCHHHHHHHHHHHHHHH-HHHHH
Confidence 578888888888777776666666665555555555442 22 46777777888888777 77754
No 53
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=25.41 E-value=81 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=13.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALFVKC 43 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~Eea 43 (96)
.||+|++.|. +.+|..+..+...+
T Consensus 369 ~i~lPpl~EQ--~~Iv~~l~~~~~~i 392 (464)
T 2y7c_A 369 VVLLPPVKEQ--AEIVRRVEQLFAYA 392 (464)
T ss_dssp EEEECCHHHH--HHHHHHHHHHHHHH
T ss_pred cCCCCCHHHH--HHHHHHHHHHHHHH
Confidence 4677776554 45666655555443
No 54
>1ukk_A Osmotically inducible protein C; peroxidase, cysteinesulfinic acid, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.60A {Thermus thermophilus} SCOP: d.227.1.1
Probab=25.24 E-value=24 Score=23.44 Aligned_cols=23 Identities=13% Similarity=0.045 Sum_probs=18.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFVVTKEHRESLSKNAKALF 40 (96)
Q Consensus 18 ~i~iP~LTeErRkeLVK~aKk~~ 40 (96)
.+.+|.+++|..++|+..|.+.|
T Consensus 101 ~v~~~~~~~e~~~~l~~~a~~~C 123 (142)
T 1ukk_A 101 EAEVPGISSEKFLEIAEAAKEGC 123 (142)
T ss_dssp EEECTTCCHHHHHHHHHHHTTSS
T ss_pred EEEeCCCCHHHHHHHHHHHHhcC
Confidence 45688999999999998887543
No 55
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=24.89 E-value=89 Score=23.04 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9115 27 EHRESLSKNAKALFVKCKENIRDIQNK 53 (96)
Q Consensus 27 ErRkeLVK~aKk~~EeaKvaIRNIRRd 53 (96)
+.|++++|.++.+.-.+|..|..+.|-
T Consensus 31 d~REriik~sRdI~~~Sk~~I~~Lhr~ 57 (240)
T 1j1j_A 31 DIREEIRKVVQSLEQTAREILTLLQGV 57 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 679999999999999999999877764
No 56
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.85 E-value=67 Score=23.96 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=26.8
Q ss_pred hhhhccccccccccCccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9115 3 MLWSRGLECRRDKFQDQSSFVVTKEHRESLSKNAKALFVKC 43 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~iP~LTeErRkeLVK~aKk~~Eea 43 (96)
.|+-+|+.+ ..-|.|+.+||++.+++|-+..+...|..
T Consensus 258 al~~~G~~~---g~~R~Pl~~l~~~~~~~l~~~l~~~~~~~ 295 (300)
T 3eb2_A 258 GLALQGYDV---GDPIPPQAALTAEERKAVEKVLAEIAEGH 295 (300)
T ss_dssp HHHHTTCCC---CCCCTTSCCCCHHHHHHHHHHHHHC----
T ss_pred HHHHCCCCC---CCcCCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 355677743 23688999999999999999888777653
No 57
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=23.84 E-value=63 Score=18.40 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=19.5
Q ss_pred cCccCCCC----CCHHHHHHHHHHHHHHHHH
Q psy9115 16 FQDQSSFV----VTKEHRESLSKNAKALFVK 42 (96)
Q Consensus 16 ~~~i~iP~----LTeErRkeLVK~aKk~~Ee 42 (96)
|..|.+.. .|.|..+.|++.+-....+
T Consensus 2 ~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~ 32 (67)
T 3m21_A 2 FINIKLVPENGGPTNEQKQQLIEGVSDLMVK 32 (67)
T ss_dssp EEEEEECCBTTBSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44555554 8999999999887666543
No 58
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=23.50 E-value=1.5e+02 Score=18.90 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=36.8
Q ss_pred hcccccccc-ccCccCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHH
Q psy9115 6 SRGLECRRD-KFQDQSSFVVTKEHRESLSKNAKALFVK--CKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFE 82 (96)
Q Consensus 6 ~~~~~~~~~-~~~~i~iP~LTeErRkeLVK~aKk~~Ee--aKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQkl 82 (96)
..|+-.|.. .-..+-.|.+|++.. +...++.+.+. +.-+...+-.. += +.+|+++...+..-++++
T Consensus 54 ~kGlv~r~~~~r~~~~~~~lt~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~ls~eE~~~L~~lL~~~ 122 (138)
T 2g9w_A 54 KKNLVLQIRDDRAHRYAPVHGRDEL--VAGLMVDALAQAEDSGSRQAALVH----FV-----ERVGADEADALRRALAEL 122 (138)
T ss_dssp HTTSEEEEC---CCEEEESSCHHHH--HHHHHHHHHTTSSSHHHHHHHHHH----HH-----HHSCHHHHHHHHHHHHHH
T ss_pred HCCCEEEEecCCeEEEEeCCCHHHH--HHHHHHHHHHHHhhCCCHHHHHHH----HH-----HhCCHHHHHHHHHHHHHh
Confidence 445544432 222344578887754 34444444433 22222222222 21 148999999999999999
Q ss_pred hhcc
Q psy9115 83 SYHG 86 (96)
Q Consensus 83 T~d~ 86 (96)
. +.
T Consensus 123 ~-~~ 125 (138)
T 2g9w_A 123 E-AG 125 (138)
T ss_dssp H-C-
T ss_pred h-hc
Confidence 8 55
No 59
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=23.22 E-value=1.9e+02 Score=20.02 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=36.5
Q ss_pred CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHH
Q psy9115 22 FVVTKEHRESL----SKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSE 77 (96)
Q Consensus 22 P~LTeErRkeL----VK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~ 77 (96)
..||.+|+..| .+.|....++-+..-..-|+.++..--+-..=+++|+|+++..=.
T Consensus 9 ~~mt~~Rk~~Lk~lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~k 68 (133)
T 1j1d_C 9 SKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLAR 68 (133)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 35999999875 556777777777777777777777544432234577777654433
No 60
>3cje_A OSMC-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; HET: MSE; 1.70A {Jannaschia SP}
Probab=23.19 E-value=48 Score=22.38 Aligned_cols=23 Identities=22% Similarity=0.047 Sum_probs=18.7
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHH
Q psy9115 18 DQSSFV-VTKEHRESLSKNAKALF 40 (96)
Q Consensus 18 ~i~iP~-LTeErRkeLVK~aKk~~ 40 (96)
.+.||. +++|.++.|+..|++.|
T Consensus 119 ~v~~~~~~~~e~~~~l~~~a~~~C 142 (167)
T 3cje_A 119 DIILHSPDPIEAQQALIEAAKKGC 142 (167)
T ss_dssp EEECCCCSCHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCHHHHHHHHHHHHHcC
Confidence 466776 99999999999987654
No 61
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=22.52 E-value=66 Score=19.09 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.3
Q ss_pred HHHHHhhhhcCCCChhhhhhhHHHHHHHhhcccc
Q psy9115 55 TKTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFI 88 (96)
Q Consensus 55 ~~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi 88 (96)
++=|+....++.+|+|....++--||=|. +.|-
T Consensus 10 i~FL~~~~~~~~~s~D~~ESleVAiqCi~-~aF~ 42 (52)
T 4gof_A 10 IQFLHDQLRHGGLSSDAQESLEVAIQCLE-TAFG 42 (52)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHH-HHHT
T ss_pred HHHHHHhcccCCcCHhHHHHHHHHHHHHH-HHcC
Confidence 44455555567899999999999999998 7774
No 62
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=22.46 E-value=1.9e+02 Score=20.94 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC----CCChhhhhhhHHHHHHHhhccccc
Q psy9115 23 VVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSE----GLSQDDVRSVSEQSAFESYHGFIS 89 (96)
Q Consensus 23 ~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~----~iSEDd~k~~e~~IQklT~d~yi~ 89 (96)
.|+++.|+-|...+...........+..-.++.+.++. ++.+ .+|+++...+.+..+.+. ++|.+
T Consensus 222 ~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~-~~~Gv~v~~~~~~~~~~~~~~~~~v~-~~~~~ 290 (316)
T 2vpn_A 222 GLSEEDQQLVQDAADAAYDHTIEHIKGLSEESLEKIKA-ASDEVTVTRLNDEQIQAFKERAPQVE-EKFIE 290 (316)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH-HCTTCEEEECCHHHHHHHHTTHHHHH-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCEEEeCCHHHHHHHHHHHHHHH-HHHHH
Confidence 57888888888877776666665555444445555510 1122 156777777777777776 66654
No 63
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=22.42 E-value=83 Score=23.78 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=24.4
Q ss_pred hhhccccccccccCccCCCCCCHHHHHHHHHHHHH
Q psy9115 4 LWSRGLECRRDKFQDQSSFVVTKEHRESLSKNAKA 38 (96)
Q Consensus 4 ~~~~~~~~~~~~~~~i~iP~LTeErRkeLVK~aKk 38 (96)
|.-+|+ |. ..-|.|+.+||++.++.|.+..+.
T Consensus 278 l~~~G~-~~--g~~R~Pl~~l~~~~~~~l~~~l~~ 309 (315)
T 3si9_A 278 AAKLGL-CG--TIVRSPIVPLSDTTKKIIDEALYH 309 (315)
T ss_dssp HHHTTS-SC--CCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHCCC-CC--CCcCCCCCCCCHHHHHHHHHHHHH
Confidence 455677 43 457889999999999998776654
No 64
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=22.19 E-value=99 Score=23.48 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9115 27 EHRESLSKNAKALFVKCKENIRDIQN 52 (96)
Q Consensus 27 ErRkeLVK~aKk~~EeaKvaIRNIRR 52 (96)
++|++++|.++.+.-.+|-.|.-+-|
T Consensus 51 d~REriik~sRdIt~~SK~~If~LhR 76 (290)
T 3qb5_K 51 DKYERLVKLSRDITVESKRTIFLLHR 76 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999987755
No 65
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=21.82 E-value=1.4e+02 Score=21.82 Aligned_cols=63 Identities=8% Similarity=0.040 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCC-CChhhhhhhHHHHHHHhhcccc
Q psy9115 22 FVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEG-LSQDDVRSVSEQSAFESYHGFI 88 (96)
Q Consensus 22 P~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~-iSEDd~k~~e~~IQklT~d~yi 88 (96)
-.|++|.|+-|...+...........+..-..+.+.+++. +- +.+-+...+.+-.+.+. ++|.
T Consensus 224 ~~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~---G~~v~~~~~~~~~~a~~~v~-~~~~ 287 (312)
T 2xwv_A 224 KELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQ---GVKITHPDLVPFKESMKPYY-AEFV 287 (312)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCEEECCCSHHHHHHTHHHH-HHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEeccCHHHHHHHHHHHH-HHHH
Confidence 3688999998888777666666555555444444444432 22 44434455566666665 5554
No 66
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.76 E-value=12 Score=25.80 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9115 22 FVVTKEHRESLSKNAKALFVKCKENIRDIQNKY 54 (96)
Q Consensus 22 P~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda 54 (96)
|.|++|.+++|.+=+..+-= --.+||+|||.
T Consensus 10 ~~l~~ee~~el~~WL~~l~L--s~~~rn~rRDF 40 (127)
T 2ee7_A 10 SSVDEEALHQLYLWVDNIPL--SRPKRNLSRDF 40 (127)
T ss_dssp SSCCHHHHHHHHHHHHHSCC--SCCSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCC--CCCCCchhhhc
Confidence 78999999999998873221 12478899875
No 67
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=21.61 E-value=1.1e+02 Score=19.32 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=18.5
Q ss_pred CChhhhhhhHHHHHHHhhcccccCCCCCC
Q psy9115 67 LSQDDVRSVSEQSAFESYHGFISGEPLDG 95 (96)
Q Consensus 67 iSEDd~k~~e~~IQklT~d~yi~~~~~~~ 95 (96)
++.....++.+.|.++..+-+..|.+|.|
T Consensus 18 Ld~~~~~ri~~~l~~l~~nP~~~~k~L~g 46 (95)
T 4fxi_A 18 LGSTVREQLKKKLVEVLESPRIEANKLRG 46 (95)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCCGGGBCSS
T ss_pred CCHHHHHHHHHHHHHHhhCCCCcCccCcC
Confidence 35566666777777766555666666655
No 68
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=21.22 E-value=1.6e+02 Score=20.34 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHHHHHHH
Q psy9115 23 VVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFE 82 (96)
Q Consensus 23 ~LTeErRkeLVK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~~IQkl 82 (96)
.||++.|.+|-....+.-.+ ...+..+..+.+..+...+.+.|..++.+-+++..+
T Consensus 45 ~LTdeQkqqir~L~~~~r~~----~~~~~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~ 100 (145)
T 3itf_A 45 SLTEHQRQQMRDLMQQARHE----QPPVNVSELETMHRLVTAENFDENAVRAQAEKMANE 100 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHH----SCCCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH----hhhccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 48999999886665543333 222222333456666555667777776666655544
No 69
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=20.86 E-value=2.3e+02 Score=20.10 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHH----HHHHhhhhcCCCChhhhhhhHHHHHHHhhcccccC
Q psy9115 22 FVVTKEHRESLSKNAKALFVKCKE-----NIRDIQNKYT----KTVKNKEKSEGLSQDDVRSVSEQSAFESYHGFISG 90 (96)
Q Consensus 22 P~LTeErRkeLVK~aKk~~EeaKv-----aIRNIRRda~----~~iKK~eK~~~iSEDd~k~~e~~IQklT~d~yi~~ 90 (96)
+.||++.-+.+++.+.+++++=+. ..||-=-.++ +.|... .+.+++++...++..++.+- .++.+
T Consensus 114 ~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~~~--~~~~~~~~k~~i~~~l~~~~--~wl~~ 187 (227)
T 1u00_A 114 YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD--AALLSAAERQVIDDAAAHLS--EVAQG 187 (227)
T ss_dssp SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--GGGSCHHHHHHHHHHHHHHH--HHTTS
T ss_pred cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccCCHHHHHHHHHHHHHHH--HHHhc
Confidence 459999999999999888765332 2222111112 222222 23589999999999888876 35544
No 70
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=20.67 E-value=65 Score=23.75 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=26.0
Q ss_pred hhhccccccccccCccCCCCCCHHHHHHHHHHHHHHHHH
Q psy9115 4 LWSRGLECRRDKFQDQSSFVVTKEHRESLSKNAKALFVK 42 (96)
Q Consensus 4 ~~~~~~~~~~~~~~~i~iP~LTeErRkeLVK~aKk~~Ee 42 (96)
|.-+|+.+ ..-|.|+.+++++.++.|.+..+.+.|+
T Consensus 248 l~~~G~~~---g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 283 (286)
T 2r91_A 248 EIFQGYEA---GEPRGPVYPLDPEEKAWLRAAVAKAKSQ 283 (286)
T ss_dssp HHHHCSCC---CBCCTTSCCCCHHHHHHHHHHTHHHHHT
T ss_pred HHHcCCCC---CCcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44456633 2457889899999999998887776553
No 71
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=20.61 E-value=68 Score=20.69 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=20.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9115 19 QSSFVVTKEHRESLSKNAKALFVKC 43 (96)
Q Consensus 19 i~iP~LTeErRkeLVK~aKk~~Eea 43 (96)
|.|.-+.+..|++|+|.|..++.+.
T Consensus 44 iritgvpeqvrkelakeaerlakef 68 (85)
T 2kl8_A 44 IRITGVPEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEecChHHHHHHHHHHHHHHHHhc
Confidence 5567788999999999998887664
No 72
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=20.43 E-value=1.2e+02 Score=22.37 Aligned_cols=34 Identities=6% Similarity=-0.036 Sum_probs=25.7
Q ss_pred hhhhccccccccccCccCCCCCCHHHHHHHHHHHHHH
Q psy9115 3 MLWSRGLECRRDKFQDQSSFVVTKEHRESLSKNAKAL 39 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~iP~LTeErRkeLVK~aKk~ 39 (96)
.|+-+|+.+ ..-|.|+.+||++.++.|.+..+.+
T Consensus 255 ~l~~~G~~~---g~~R~Pl~~l~~~~~~~l~~~l~~~ 288 (292)
T 3daq_A 255 LTSYLGFGN---YELRLPLVSLEDTDTKVLREAYDTF 288 (292)
T ss_dssp HHHHTTSSB---SCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCC---CCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 455678733 3578899999999999998777654
No 73
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=20.38 E-value=1.7e+02 Score=20.94 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=16.5
Q ss_pred ccCccCCCCCCHHHHHHHHH
Q psy9115 15 KFQDQSSFVVTKEHRESLSK 34 (96)
Q Consensus 15 ~~~~i~iP~LTeErRkeLVK 34 (96)
.|..+.||+++.+.+..+++
T Consensus 250 R~~~i~~~~~~~~e~~~il~ 269 (368)
T 3uk6_A 250 RLLIVSTTPYSEKDTKQILR 269 (368)
T ss_dssp TEEEEEECCCCHHHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHH
Confidence 45568999999999888887
No 74
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=20.32 E-value=1.4e+02 Score=19.40 Aligned_cols=20 Identities=0% Similarity=-0.099 Sum_probs=15.7
Q ss_pred CccCCCCCCHHHHHHHHHHH
Q psy9115 17 QDQSSFVVTKEHRESLSKNA 36 (96)
Q Consensus 17 ~~i~iP~LTeErRkeLVK~a 36 (96)
..+.||+++.+.+.+++...
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHH
Confidence 56889999998888877653
No 75
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=20.23 E-value=2.6e+02 Score=20.38 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=35.4
Q ss_pred CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCCChhhhhhhHH
Q psy9115 22 FVVTKEHRESL----SKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSE 77 (96)
Q Consensus 22 P~LTeErRkeL----VK~aKk~~EeaKvaIRNIRRda~~~iKK~eK~~~iSEDd~k~~e~ 77 (96)
..||.+|+..| .+.|....++-+..-..-|+.++..--+-..=+++|+|+++..=.
T Consensus 9 ~~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ck 68 (180)
T 1j1e_C 9 SKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLAR 68 (180)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 35999999875 556666667777777777777776543322224477777554433
Done!