Your job contains 1 sequence.
>psy9115
MEMLWSRGLECRRDKFQDQSSFVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKN
KEKSEGLSQDDVRSVSEQSAFESYHGFISGEPLDGR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9115
(96 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035980 - symbol:CG4447 species:7227 "Drosophila m... 128 4.8e-08 1
MGI|MGI:1915121 - symbol:Mrrf "mitochondrial ribosome rec... 97 0.00015 1
RGD|1305897 - symbol:Mrrf "mitochondrial ribosome recycli... 97 0.00015 1
UNIPROTKB|G3X7D8 - symbol:MRRF "Ribosome-recycling factor... 90 0.00021 1
TIGR_CMR|CJE_0285 - symbol:CJE_0285 "ribosome recycling f... 91 0.00031 1
UNIPROTKB|E1BQ58 - symbol:MRRF "Uncharacterized protein" ... 91 0.00068 1
UNIPROTKB|Q0VCQ4 - symbol:MRRF "Ribosome-recycling factor... 90 0.00090 1
UNIPROTKB|F1SLQ7 - symbol:LOC100515005 "Uncharacterized p... 90 0.00090 1
>FB|FBgn0035980 [details] [associations]
symbol:CG4447 species:7227 "Drosophila melanogaster"
[GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR002661 InterPro:IPR016000 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
EMBL:AY069172 ProteinModelPortal:Q8T0M6 SMR:Q8T0M6 STRING:Q8T0M6
PaxDb:Q8T0M6 PRIDE:Q8T0M6 FlyBase:FBgn0035980 InParanoid:Q8T0M6
OrthoDB:EOG4H9W2V ArrayExpress:Q8T0M6 Bgee:Q8T0M6
PANTHER:PTHR20982:SF4 Uniprot:Q8T0M6
Length = 254
Score = 128 (50.1 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VTKEHRE+LSKNAKALFVK ++ IR +QN++ + +K K L +DD + Q
Sbjct: 177 VTKEHRENLSKNAKALFVKYRDAIRGVQNEHIRKLK---KQPELGKDDAFAAQAQ 228
>MGI|MGI:1915121 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0032790 "ribosome disassembly"
evidence=ISO] InterPro:IPR002661 Pfam:PF01765 MGI:MGI:1915121
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
eggNOG:COG0233 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399 HOGENOM:HOG000007351
HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V GeneTree:ENSGT00390000005084
EMBL:AK010018 EMBL:AK032371 EMBL:BX293557 EMBL:BC019787
IPI:IPI00109501 RefSeq:NP_080698.1 UniGene:Mm.378232 PDB:1WIH
PDBsum:1WIH ProteinModelPortal:Q9D6S7 SMR:Q9D6S7 STRING:Q9D6S7
PaxDb:Q9D6S7 PRIDE:Q9D6S7 Ensembl:ENSMUST00000028250 GeneID:67871
KEGG:mmu:67871 UCSC:uc008jlj.2 InParanoid:B1B055
EvolutionaryTrace:Q9D6S7 NextBio:325787 Bgee:Q9D6S7 CleanEx:MM_MRRF
Genevestigator:Q9D6S7 GermOnline:ENSMUSG00000026887 Uniprot:Q9D6S7
Length = 262
Score = 97 (39.2 bits), Expect = 0.00015, P = 0.00015
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRE L K AK K KEN+R ++ N K K+K+K+ S+D +R + +Q
Sbjct: 185 VTREHREMLVKLAKQNTNKAKENLRKVRTNAMNKLKKSKDKT---SEDTIRLIEKQ 237
>RGD|1305897 [details] [associations]
symbol:Mrrf "mitochondrial ribosome recycling factor"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
[GO:0032790 "ribosome disassembly" evidence=ISO] InterPro:IPR002661
Pfam:PF01765 RGD:1305897 GO:GO:0005739 GO:GO:0006412
Gene3D:3.30.1360.40 InterPro:IPR024946 eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982 OMA:TREHRES
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 OrthoDB:EOG4QRH4V
GeneTree:ENSGT00390000005084 EMBL:BC085779 IPI:IPI00372124
RefSeq:NP_001008355.1 UniGene:Rn.105234 ProteinModelPortal:Q5RKI9
SMR:Q5RKI9 STRING:Q5RKI9 PhosphoSite:Q5RKI9 PRIDE:Q5RKI9
Ensembl:ENSRNOT00000033047 GeneID:311903 KEGG:rno:311903
UCSC:RGD:1305897 InParanoid:Q5RKI9 NextBio:664438
Genevestigator:Q5RKI9 GermOnline:ENSRNOG00000025997 Uniprot:Q5RKI9
Length = 262
Score = 97 (39.2 bits), Expect = 0.00015, P = 0.00015
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRE L K AK K KEN+R ++ N K K+K+K+ S+D +R + +Q
Sbjct: 185 VTREHREMLVKLAKQNTNKAKENLRKVRTNAMNKLKKSKDKT---SEDTIRLIEKQ 237
>UNIPROTKB|G3X7D8 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9913 "Bos taurus" [GO:0006412 "translation" evidence=IEA]
InterPro:IPR002661 Pfam:PF01765 GO:GO:0006412 InterPro:IPR023584
SUPFAM:SSF55194 PANTHER:PTHR20982 GeneTree:ENSGT00390000005084
EMBL:DAAA02032027 Ensembl:ENSBTAT00000024516 Uniprot:G3X7D8
Length = 84
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRE L K AK K K+++R ++ N K K+K+K+ S+D +R + +Q
Sbjct: 7 VTREHREMLVKLAKQNTNKAKDSLRKVRTNAINKVKKSKDKA---SEDTIRLIEKQ 59
>TIGR_CMR|CJE_0285 [details] [associations]
symbol:CJE_0285 "ribosome recycling factor" species:195099
"Campylobacter jejuni RM1221" [GO:0006412 "translation"
evidence=ISS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=ISS] HAMAP:MF_00040 InterPro:IPR002661
Pfam:PF01765 GO:GO:0005737 GO:GO:0006412 EMBL:CP000025
GenomeReviews:CP000025_GR eggNOG:COG0233 KO:K02838
InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
HOGENOM:HOG000040143 TIGRFAMs:TIGR00496 OMA:VMVEYYG
ProtClustDB:PRK00083 RefSeq:YP_178307.1 ProteinModelPortal:Q5HWM8
STRING:Q5HWM8 GeneID:3231047 KEGG:cjr:CJE0285 PATRIC:20042268
BioCyc:CJEJ195099:GJC0-290-MONOMER Uniprot:Q5HWM8
Length = 185
Score = 91 (37.1 bits), Expect = 0.00031, P = 0.00031
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
+T+E RE K AKA+ K K +IR+I+ VK EK + +S+D+ + ++
Sbjct: 105 MTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYDE 159
>UNIPROTKB|E1BQ58 [details] [associations]
symbol:MRRF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006412 "translation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR002661 InterPro:IPR016000
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194
PANTHER:PTHR20982 OMA:TREHRES CTD:92399
GeneTree:ENSGT00390000005084 PANTHER:PTHR20982:SF4
EMBL:AADN02026362 IPI:IPI00572512 RefSeq:XP_003642346.1
RefSeq:XP_415395.1 UniGene:Gga.7262 Ensembl:ENSGALT00000002038
GeneID:417110 KEGG:gga:417110 NextBio:20820466 Uniprot:E1BQ58
Length = 259
Score = 91 (37.1 bits), Expect = 0.00068, P = 0.00068
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRESL+K AK K KE +R +++K VK K KS+ +S+D + + +Q
Sbjct: 182 VTREHRESLAKLAKQSTNKSKEALRKVRSKSVNQVK-KFKSK-VSEDTIWLLEKQ 234
>UNIPROTKB|Q0VCQ4 [details] [associations]
symbol:MRRF "Ribosome-recycling factor, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002661
Pfam:PF01765 GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40
InterPro:IPR024946 eggNOG:COG0233 KO:K02838 InterPro:IPR023584
SUPFAM:SSF55194 PANTHER:PTHR20982 EMBL:BC120054 IPI:IPI00714526
RefSeq:NP_001069775.1 UniGene:Bt.21335 ProteinModelPortal:Q0VCQ4
SMR:Q0VCQ4 STRING:Q0VCQ4 PRIDE:Q0VCQ4 GeneID:614013 KEGG:bta:614013
CTD:92399 HOGENOM:HOG000007351 HOVERGEN:HBG061516 InParanoid:Q0VCQ4
OrthoDB:EOG4QRH4V NextBio:20898894 Uniprot:Q0VCQ4
Length = 262
Score = 90 (36.7 bits), Expect = 0.00090, P = 0.00090
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRE L K AK K K+++R ++ N K K+K+K+ S+D +R + +Q
Sbjct: 185 VTREHREMLVKLAKQNTNKAKDSLRKVRTNAINKVKKSKDKA---SEDTIRLIEKQ 237
>UNIPROTKB|F1SLQ7 [details] [associations]
symbol:LOC100515005 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002661 Pfam:PF01765
GO:GO:0005739 GO:GO:0006412 Gene3D:3.30.1360.40 InterPro:IPR024946
KO:K02838 InterPro:IPR023584 SUPFAM:SSF55194 PANTHER:PTHR20982
OMA:TREHRES GeneTree:ENSGT00390000005084 EMBL:CU041257
RefSeq:XP_003480647.1 Ensembl:ENSSSCT00000006083 GeneID:100515005
KEGG:ssc:100515005 Uniprot:F1SLQ7
Length = 262
Score = 90 (36.7 bits), Expect = 0.00090, P = 0.00090
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 24 VTKEHRESLSKNAKALFVKCKENIRDIQ-NKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
VT+EHRE L K AK K KE++R ++ N K K+K+K+ S+D +R + +Q
Sbjct: 185 VTREHREMLVKLAKQNTNKAKESLRKVRTNAMNKLKKSKDKA---SEDTLRLIEKQ 237
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.128 0.358 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 96 96 0.00091 102 3 11 23 0.41 30
29 0.43 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 563 (60 KB)
Total size of DFA: 115 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:09
No. of threads or processors used: 24
Search cpu time: 13.94u 0.07s 14.01t Elapsed: 00:00:30
Total cpu time: 13.94u 0.07s 14.01t Elapsed: 00:00:39
Start: Thu Aug 15 14:09:38 2013 End: Thu Aug 15 14:10:17 2013