RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9115
         (96 letters)



>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 185

 Score = 39.2 bits (91), Expect = 1e-05
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           +T+E R+ L K  +      +  +R+I+      +K   K + +S+D+ R   E+
Sbjct: 105 LTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEE 159


>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 183

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 22  FVVTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
             +T+E R  L K AK    + K ++R+I+ K  + +    K     +D+V    + 
Sbjct: 102 PQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKD 158


>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
           thermophilus [TaxId: 274]}
          Length = 185

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
           +T+E R+ L +  +    + +  IR+I+ +    +K   K   LS+D+ +    +
Sbjct: 106 LTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAE 160


>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
           maritima [TaxId: 2336]}
          Length = 184

 Score = 37.3 bits (86), Expect = 6e-05
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 24  VTKEHRESLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQ 78
            T E RE   K AK +  + K  IR+I+ +  K +K  +K   + +DD + +  +
Sbjct: 104 PTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENE 158


>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
          (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 24.4 bits (53), Expect = 1.6
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 31 SLSKNAKALFVKCKENIRDIQNKYTKTVKNKEKSEGLSQDDVRSVSEQSAFESY 84
           ++K+AK    +C                ++EK + ++ +D+        F+SY
Sbjct: 21 KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSY 74


>d1iwga5 d.225.1.1 (A:182-273) Multidrug efflux transporter AcrB
          TolC docking domain; DN and DC subdomains {Escherichia
          coli [TaxId: 562]}
          Length = 92

 Score = 22.7 bits (48), Expect = 7.8
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 60 NKEKSEGLSQDDVRSVSEQSAFESYHGFISGEP 92
          N+     L+  DV +  +    +   G + G P
Sbjct: 10 NELNKFQLTPVDVITAIKAQNAQVAAGQLGGTP 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,463
Number of extensions: 10319
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 11
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)