Query psy9117
Match_columns 61
No_of_seqs 119 out of 1008
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 19:21:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03952 Enolase_N: Enolase, N 99.9 3E-27 6.4E-32 152.4 5.0 58 2-61 72-129 (132)
2 PRK08350 hypothetical protein; 99.9 6.1E-26 1.3E-30 164.8 4.9 58 2-61 59-116 (341)
3 COG0148 Eno Enolase [Carbohydr 99.9 2.9E-25 6.3E-30 164.4 5.3 58 2-61 73-130 (423)
4 KOG2670|consensus 99.9 5.6E-24 1.2E-28 156.4 4.3 60 2-61 72-131 (433)
5 PTZ00378 hypothetical protein; 99.9 8.7E-23 1.9E-27 154.3 4.9 58 2-61 114-171 (518)
6 PLN00191 enolase 99.9 2.9E-22 6.4E-27 148.9 5.1 58 2-61 96-153 (457)
7 PTZ00081 enolase; Provisional 99.8 1.1E-21 2.5E-26 145.1 4.7 58 2-61 73-136 (439)
8 cd03313 enolase Enolase: Enola 99.7 1.5E-18 3.2E-23 126.6 5.1 58 2-61 69-126 (408)
9 PRK00077 eno enolase; Provisio 99.7 7.8E-18 1.7E-22 123.4 5.0 58 2-61 74-131 (425)
10 TIGR01060 eno phosphopyruvate 99.7 5.1E-17 1.1E-21 119.1 4.1 58 2-61 71-128 (425)
11 cd03327 MR_like_2 Mandelate ra 97.1 0.00053 1.2E-08 48.8 3.5 58 2-61 41-98 (341)
12 cd03317 NAAAR N-acylamino acid 95.6 0.024 5.2E-07 40.1 4.6 51 2-61 66-116 (354)
13 PRK15440 L-rhamnonate dehydrat 95.3 0.027 5.9E-07 41.5 4.1 56 2-61 88-145 (394)
14 TIGR01502 B_methylAsp_ase meth 95.2 0.043 9.3E-07 41.0 4.9 54 2-61 95-149 (408)
15 cd03328 MR_like_3 Mandelate ra 94.7 0.048 1E-06 39.1 3.8 57 2-61 59-116 (352)
16 PF02746 MR_MLE_N: Mandelate r 94.7 0.08 1.7E-06 32.1 4.3 52 2-61 62-113 (117)
17 cd03314 MAL Methylaspartate am 94.5 0.062 1.3E-06 39.6 4.0 56 2-61 58-113 (369)
18 PRK15072 bifunctional D-altron 94.3 0.066 1.4E-06 39.1 3.8 57 2-61 50-106 (404)
19 cd03329 MR_like_4 Mandelate ra 94.1 0.082 1.8E-06 37.9 3.9 53 2-61 64-116 (368)
20 cd03316 MR_like Mandelate race 93.9 0.079 1.7E-06 37.3 3.5 58 2-61 59-116 (357)
21 cd03322 rpsA The starvation se 93.5 0.12 2.6E-06 37.1 3.9 56 2-61 49-105 (361)
22 cd03321 mandelate_racemase Man 92.6 0.23 4.9E-06 35.5 4.1 55 3-61 66-121 (355)
23 cd03325 D-galactonate_dehydrat 91.6 0.29 6.2E-06 35.0 3.8 56 3-61 47-102 (352)
24 cd03318 MLE Muconate Lactonizi 91.5 0.36 7.8E-06 34.4 4.1 51 2-61 70-121 (365)
25 COG4948 L-alanine-DL-glutamate 91.4 0.32 7E-06 34.8 3.9 56 3-61 65-120 (372)
26 cd03324 rTSbeta_L-fuconate_deh 91.0 0.37 8E-06 35.7 3.9 58 2-61 67-131 (415)
27 PRK14017 galactonate dehydrata 90.6 0.4 8.6E-06 34.7 3.7 56 2-61 47-103 (382)
28 TIGR03247 glucar-dehydr glucar 89.9 0.56 1.2E-05 35.2 4.1 58 2-61 63-129 (441)
29 TIGR01928 menC_lowGC/arch o-su 89.7 0.66 1.4E-05 32.9 4.1 49 3-61 64-112 (324)
30 cd03326 MR_like_1 Mandelate ra 88.9 0.77 1.7E-05 33.7 4.2 58 2-61 64-130 (385)
31 cd03319 L-Ala-DL-Glu_epimerase 87.7 1.5 3.2E-05 30.6 4.8 50 3-61 64-113 (316)
32 TIGR02534 mucon_cyclo muconate 87.6 1.1 2.5E-05 32.0 4.3 52 2-61 69-120 (368)
33 PF05034 MAAL_N: Methylasparta 87.4 1.3 2.8E-05 30.0 4.2 52 2-58 96-147 (159)
34 cd03323 D-glucarate_dehydratas 66.6 15 0.00033 26.9 4.7 56 3-61 60-126 (395)
35 cd07050 BMC_EutL_repeat2 ethan 63.5 6.1 0.00013 24.4 1.8 38 17-55 29-73 (87)
36 PF06545 DUF1116: Protein of u 50.8 20 0.00043 25.3 2.9 44 3-56 114-157 (216)
37 PRK02877 hypothetical protein; 44.7 2 4.4E-05 26.9 -2.5 26 16-47 58-83 (106)
38 PRK01217 hypothetical protein; 44.3 3.7 8.1E-05 26.0 -1.4 28 16-49 65-92 (114)
39 PF12431 CitT: Transcriptional 44.2 17 0.00036 17.9 1.3 12 16-27 2-13 (30)
40 PF11293 DUF3094: Protein of u 41.5 18 0.00039 20.6 1.3 16 11-26 3-18 (55)
41 cd05024 S-100A10 S-100A10: A s 41.0 46 0.00099 20.3 3.1 18 13-30 43-60 (91)
42 COG1214 Inactive homolog of me 40.6 20 0.00043 24.5 1.7 20 42-61 74-93 (220)
43 COG3856 Sbp Uncharacterized co 39.9 26 0.00056 22.5 2.0 24 35-61 61-84 (113)
44 cd06405 PB1_Mekk2_3 The PB1 do 37.6 28 0.00061 21.1 1.8 22 12-33 48-69 (79)
45 PRK12855 hypothetical protein; 37.0 5.6 0.00012 24.8 -1.4 27 16-48 58-84 (103)
46 PLN02980 2-oxoglutarate decarb 33.7 66 0.0014 28.2 3.9 26 36-61 1035-1060(1655)
47 PRK03732 hypothetical protein; 33.4 6.9 0.00015 24.9 -1.4 27 16-48 65-91 (114)
48 PRK01119 hypothetical protein; 33.1 7.1 0.00015 24.4 -1.4 24 17-46 59-82 (106)
49 cd00308 enolase_like Enolase-s 31.6 34 0.00074 22.6 1.6 22 40-61 43-64 (229)
50 PRK12856 hypothetical protein; 31.5 7.8 0.00017 24.2 -1.4 26 17-48 59-84 (103)
51 COG0393 Uncharacterized conser 31.1 8.2 0.00018 24.6 -1.3 24 17-46 59-82 (108)
52 TIGR03884 sel_bind_Methan sele 29.3 4.2 9E-05 24.4 -2.8 13 34-46 39-51 (74)
53 cd05027 S-100B S-100B: S-100B 27.4 1.1E+02 0.0023 17.8 3.2 20 11-31 45-64 (88)
54 COG5478 Predicted small integr 27.2 54 0.0012 21.8 2.0 16 17-32 77-92 (141)
55 TIGR03725 bact_YeaZ universal 26.3 76 0.0016 20.9 2.6 25 37-61 65-89 (202)
56 PF06947 DUF1290: Protein of u 25.4 61 0.0013 20.0 1.8 25 34-61 40-64 (88)
57 TIGR01397 fliM_switch flagella 25.0 54 0.0012 23.0 1.8 16 14-29 2-17 (320)
58 PRK00967 hypothetical protein; 22.1 15 0.00032 22.8 -1.4 24 17-46 59-82 (105)
59 PF12213 Dpoe2NT: DNA polymera 20.4 1.5E+02 0.0032 17.2 2.8 32 2-35 27-59 (73)
No 1
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=99.94 E-value=3e-27 Score=152.44 Aligned_cols=58 Identities=60% Similarity=0.879 Sum_probs=53.6
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
.|+|+|+ |++++||++||++|+++|||+||+++|+|+++|||||+|||+|+.+++|||
T Consensus 72 ~i~~~L~--g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~ 129 (132)
T PF03952_consen 72 IIAPALI--GLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLY 129 (132)
T ss_dssp THHHHHT--TSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HH
T ss_pred HHHHHHH--hcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChh
Confidence 4789999 899999999999999999999999999999999999999999999999998
No 2
>PRK08350 hypothetical protein; Provisional
Probab=99.92 E-value=6.1e-26 Score=164.84 Aligned_cols=58 Identities=45% Similarity=0.696 Sum_probs=56.9
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
.|+|+|+ |+|+.||++||++|+++|||+|||++|+|+|||||||+|||+|+++++|||
T Consensus 59 ~Iap~Li--G~d~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy 116 (341)
T PRK08350 59 IIGPELI--GFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLY 116 (341)
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHH
Confidence 5899999 999999999999999999999999999999999999999999999999998
No 3
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.9e-25 Score=164.36 Aligned_cols=58 Identities=62% Similarity=0.875 Sum_probs=56.9
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
.|+|+|+ |+|+.||..||++|+++|||+|||+||+|+||+||||+|||||+++++|||
T Consensus 73 ~Iap~Li--G~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy 130 (423)
T COG0148 73 IIAPALI--GLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLY 130 (423)
T ss_pred HHHHHHc--CCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHH
Confidence 5899999 999999999999999999999999999999999999999999999999998
No 4
>KOG2670|consensus
Probab=99.89 E-value=5.6e-24 Score=156.38 Aligned_cols=60 Identities=70% Similarity=0.985 Sum_probs=58.2
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
.|+|+|++.++|+.||+.||++|++||||+|||++|+|+||+||+|+|||+|+.+++|||
T Consensus 72 ~i~pali~~~~dv~~Q~~iD~~mi~LDGTeNKsklGaNaIlgvSlavckagAa~k~vply 131 (433)
T KOG2670|consen 72 TIAPALIKKNLDVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVCKAGAAEKGVPLY 131 (433)
T ss_pred HHHHHHHccCCChhhHHHHHHHHHhccCCcccccccchhhHHHHHHHHhhhhhhcCCcHH
Confidence 479999988889999999999999999999999999999999999999999999999998
No 5
>PTZ00378 hypothetical protein; Provisional
Probab=99.87 E-value=8.7e-23 Score=154.32 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=56.6
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
.|+|+|+ |+++.||++||++|+++|||+||+++|+|+|+|||||+|||+|+.+++|||
T Consensus 114 ~i~p~Li--g~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy 171 (518)
T PTZ00378 114 SYFPRLL--QLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLF 171 (518)
T ss_pred hhHHHHc--CCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4789999 999999999999999999999999999999999999999999999999998
No 6
>PLN00191 enolase
Probab=99.86 E-value=2.9e-22 Score=148.93 Aligned_cols=58 Identities=62% Similarity=0.918 Sum_probs=56.7
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
.|+|+|+ |+++.||++||++|+++|||+||+++|+|+|+|||||+|||+|+.+|+|||
T Consensus 96 ~ia~~Li--G~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy 153 (457)
T PLN00191 96 IIAPALI--GMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLY 153 (457)
T ss_pred HHHHHHc--CCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHH
Confidence 4799999 999999999999999999999999999999999999999999999999998
No 7
>PTZ00081 enolase; Provisional
Probab=99.84 E-value=1.1e-21 Score=145.14 Aligned_cols=58 Identities=60% Similarity=0.880 Sum_probs=56.6
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHh-hhCCCC-----CCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIK-LDGTEN-----KSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~-lDgT~n-----ks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
.|+|+|+ |+|+.||++||++|++ +|||+| ||++|+|+|+|||||+|||+|+.+|+|||
T Consensus 73 ~i~~~Li--G~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy 136 (439)
T PTZ00081 73 IIAPALI--GKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLY 136 (439)
T ss_pred HHHHHHc--CCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHH
Confidence 4799999 9999999999999999 999999 99999999999999999999999999998
No 8
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=99.74 E-value=1.5e-18 Score=126.65 Aligned_cols=58 Identities=62% Similarity=0.897 Sum_probs=56.6
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+|+|+|+ |+|+.||++||+.|+++|||+||+++|+|+++|||||+++|+|+.+|+|||
T Consensus 69 ~iap~Li--G~d~~dq~~id~~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy 126 (408)
T cd03313 69 IIAPALI--GMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLY 126 (408)
T ss_pred HHHHHHc--CCChhhHHHHHHHHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHH
Confidence 5789999 999999999999999999999999999999999999999999999999998
No 9
>PRK00077 eno enolase; Provisional
Probab=99.71 E-value=7.8e-18 Score=123.35 Aligned_cols=58 Identities=59% Similarity=0.819 Sum_probs=56.6
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+|+|.|+ |+|+.||+.||+.|+++|||+||+++|+|+|+|||||+++++|+.+|+|||
T Consensus 74 ~iap~Li--G~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy 131 (425)
T PRK00077 74 EIAPALI--GLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLY 131 (425)
T ss_pred HHHHHHc--CCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHH
Confidence 5899999 999999999999999999999999999999999999999999999999998
No 10
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=99.66 E-value=5.1e-17 Score=119.06 Aligned_cols=58 Identities=59% Similarity=0.858 Sum_probs=56.5
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+|+|.|+ |+|+.||+.||+.|+++|+|+||+++|+|+++|||||+++++|+.+|+|||
T Consensus 71 ~iap~Li--G~d~~d~~~id~~l~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply 128 (425)
T TIGR01060 71 IIAPALI--GMDAFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLY 128 (425)
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 5899999 999999999999999999999999999999999999999999999999998
No 11
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.13 E-value=0.00053 Score=48.75 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=45.4
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.+.+.+.+.|.........+.+...++-|+.+|+--..++..|+|+|
T Consensus 41 ~l~p~li--G~dp~~~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~ 98 (341)
T cd03327 41 HLARFLI--GKDPSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVY 98 (341)
T ss_pred HHHHHhC--CCCchHHHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHH
Confidence 4789999 899999999988886543222223334468999999999999999999987
No 12
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.65 E-value=0.024 Score=40.14 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=42.5
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
++.|.|+ |.++.+.+++.+.|..+.| ...++.||.+|+--+.++..|+|+|
T Consensus 66 ~~~p~l~--g~~~~~~~~~~~~~~~~~~-------~~~a~aaid~AlwDl~gk~~g~Pv~ 116 (354)
T cd03317 66 YLLPLLL--GREFSHPEEVSERLAPIKG-------NNMAKAGLEMAVWDLYAKAQGQSLA 116 (354)
T ss_pred HHHHHHc--CCCCCCHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3678998 8999999999887766432 2358999999999999999999986
No 13
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=95.35 E-value=0.027 Score=41.45 Aligned_cols=56 Identities=23% Similarity=0.163 Sum_probs=42.9
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCc--cchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSK--FGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~--lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.|.+.+-+.|... +....+ +..+++-||-+|+-=..++..|+|+|
T Consensus 88 ~l~p~Li--G~dp~~~e~l~~~m~~~--~~~~g~~g~~~~A~saIDiALwDl~gK~~g~Pv~ 145 (394)
T PRK15440 88 HLNRFIE--GKCVSDIELIWDQMLNA--TLYYGRKGLVMNTISCVDLALWDLLGKVRGLPVY 145 (394)
T ss_pred HHHHHcC--CCChhhHHHHHHHHHhh--ccccCCccHhhhHHHHHHHHHHHHhhhHcCCcHH
Confidence 4789999 89999998887766443 211222 23579999999999999999999987
No 14
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=95.24 E-value=0.043 Score=41.00 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=41.7
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHH-HHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAI-LGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNai-lavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.+.+++-+.|...-. +.. +- .++ -||++|+--+.|+..|+|+|
T Consensus 95 ~laP~Li--G~d~~~~~~l~~~~~~~~~--~~~-~~-~a~kaavd~AL~D~~ak~~g~pl~ 149 (408)
T TIGR01502 95 EVAPKLI--GRDITNFKDMAEVFEKMTV--NRN-LH-TAIRYGVSQALLDAAAKTRKTTMA 149 (408)
T ss_pred HhhHHHc--CCCccCHHHHHHHHHHHhh--cCc-ch-hHHHHHHHHHHHHHHHHHcCCcHH
Confidence 5799999 8999998887777666521 111 22 355 89999999999999999986
No 15
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.71 E-value=0.048 Score=39.12 Aligned_cols=57 Identities=21% Similarity=0.123 Sum_probs=42.0
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhh-hCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKL-DGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~l-DgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.+.+.|-+.|... .+... +.....++-|+.+|+-=.-++..|+|+|
T Consensus 59 ~~~p~li--G~d~~~~~~l~~~~~~~~~~~~~-~g~~~~a~aaiD~AlwDl~gK~~g~Pv~ 116 (352)
T cd03328 59 LLAPVVE--GRDALDPPAAWEAMQRAVRNAGR-PGVAAMAISAVDIALWDLKARLLGLPLA 116 (352)
T ss_pred HHHHHhc--CCCcccHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHhhhhcCCcHH
Confidence 4789999 89999988887766542 21111 1112357889999999999999999987
No 16
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=94.66 E-value=0.08 Score=32.07 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=40.0
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
++.|.|+ |.++.+.+++.+.+...- .-..-++-|+.+|+-=+.|+..|+|||
T Consensus 62 ~l~~~l~--g~~~~~~~~~~~~~~~~~------~~~~~a~aaid~AlwDl~gK~~g~Pl~ 113 (117)
T PF02746_consen 62 YLAPLLI--GQDPDDIEDIWQELYRLI------KGNPAAKAAIDMALWDLLGKIAGQPLY 113 (117)
T ss_dssp THHHHHT--TSBTTGHHHHHHHHHHHT------SSHHHHHHHHHHHHHHHHHHHHTSBHH
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3678898 889988877766554431 114557779999999999999999987
No 17
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.48 E-value=0.062 Score=39.59 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=39.9
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.|.+.+-+.|...--.++ .....+.-|+.+|+-=..++..|+|+|
T Consensus 58 ~lap~Li--G~d~~~i~~i~~~m~~~~~~g~--~~~~aaksAIDiALwDl~gK~~g~Pv~ 113 (369)
T cd03314 58 VIAPALV--GRDVANFRPAAAVLDKMRLDGN--RLHTAIRYGVSQALLDAVALAQRRTMA 113 (369)
T ss_pred hhhhHhc--CCCHHHHHHHHHHHHHHhhcCC--cchhhHHHHHHHHHHHHHHHHhCCcHH
Confidence 5789999 8999988887776644210011 111123479999999999999999987
No 18
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=94.32 E-value=0.066 Score=39.14 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=41.6
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.+-+.+-+.|... ...........++-|+.+|+-=..++..|+|+|
T Consensus 50 ~l~p~l~--G~d~~~~e~~~~~l~~~-~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~ 106 (404)
T PRK15072 50 HVCPLLI--GRDAHRIEDIWQYLYRG-AYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLY 106 (404)
T ss_pred HHHHHcC--CCChhHHHHHHHHHHHh-cccCCchHHHHHHHHHHHHHHHHhhhhcCCcHH
Confidence 4789999 89998888887777442 001111122347889999999999999999987
No 19
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.11 E-value=0.082 Score=37.92 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=41.9
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.|-+++-+.|...-. .....++-|+.+|+-=..++..|+|+|
T Consensus 64 ~l~p~li--G~d~~~~~~~~~~~~~~~~-----~~~~~A~said~AlwDl~gk~~g~Pl~ 116 (368)
T cd03329 64 FLKKVLI--GQDPLDRERLWQDLWRLQR-----GLTDRGLGLVDIALWDLAGKYLGLPVH 116 (368)
T ss_pred HHHHhcC--CCChhHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHhhhhcCCcHH
Confidence 4689999 8999998888666655311 133458899999999999999999987
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=93.91 E-value=0.079 Score=37.34 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=40.4
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.++.+.+++-+.|...-........-..+.-|+.+|+--+.++..|+|+|
T Consensus 59 ~~~p~l~--G~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~ 116 (357)
T cd03316 59 LLAPLLI--GRDPLDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVY 116 (357)
T ss_pred HHHHHcc--CCChHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHh
Confidence 4789999 899988888766664431000000011357789999999999999999987
No 21
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=93.53 E-value=0.12 Score=37.13 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=41.0
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCC-CccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENK-SKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nk-s~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.+.+.+-+.|... +.-+ ......++-|+.+|+-=..++..|+|+|
T Consensus 49 ~l~p~l~--G~d~~~~~~~~~~~~~~--~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~ 105 (361)
T cd03322 49 HLKPLLI--GRDANRIEDIWQYLYRG--AYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLY 105 (361)
T ss_pred HHHHHcC--CCChhHHHHHHHHHHHh--cccCCchHHHHHHHHHHHHHHHHhHhhcCCcHH
Confidence 4789999 89999888887766442 1000 0112247889999999999999999986
No 22
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.58 E-value=0.23 Score=35.51 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=37.4
Q ss_pred hhhhHHhCCCCcccHHHHHHHHHhhhC-CCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 3 LLFNLVTLSFEVTQQKEIDEFMIKLDG-TENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 3 i~p~L~~~g~~~~dQ~~iD~~L~~lDg-T~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
++|.|+ |.+. +...+.+.+...-. ..+ ..+...++-|+.+|+--..++..|+|+|
T Consensus 66 l~p~Li--G~~~-~~~~~~~~~~~~~~~~~~-~~~~~~a~aaid~AlwDl~gk~~g~Pv~ 121 (355)
T cd03321 66 MAALLV--GEPL-APAELERALAKRFRLLGY-TGLVRMAAAGIDMAAWDALAKVHGLPLA 121 (355)
T ss_pred HHHHhC--CCCC-ChHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 678999 7765 55566655544310 011 1122457889999999999999999986
No 23
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.62 E-value=0.29 Score=35.01 Aligned_cols=56 Identities=20% Similarity=0.113 Sum_probs=38.0
Q ss_pred hhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 3 LLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 3 i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
++|.|+ |.|+.|.+.+=+.|... ...........++-|+.+|+-=+.++..|+|+|
T Consensus 47 l~p~l~--G~d~~~~~~~~~~~~~~-~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~ 102 (352)
T cd03325 47 LEDYLI--GKDPMNIEHHWQVMYRG-GFYRGGPVLMSAISGIDQALWDIKGKVLGVPVH 102 (352)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHh-cCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHH
Confidence 678898 88888776665544221 001111112347889999999999999999986
No 24
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=91.46 E-value=0.36 Score=34.41 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=38.1
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHh-hhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIK-LDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~-lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.+.+.+-+.|.. +.+ +..++-|+.+|+--+.++..|+|+|
T Consensus 70 ~~~~~l~--G~~~~~~~~~~~~l~~~~~~-------~~~a~said~AlwDl~gK~~g~Pl~ 121 (365)
T cd03318 70 YLAPLLI--GRDATNIGAAMALLDRAVAG-------NLFAKAAIEMALLDAQGRRLGLPVS 121 (365)
T ss_pred hhHHHHc--CCChHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHhHcCCCHH
Confidence 4678888 8898887666444433 221 2347889999999999999999986
No 25
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=91.45 E-value=0.32 Score=34.81 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=39.7
Q ss_pred hhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 3 LLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 3 i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++.++ |.++.+...+.+.|..- +..+...+.-.++-||-+|+-=..|+..|+|+|
T Consensus 65 ~~~~l~--g~d~~~i~~~~~~~~~~-~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~ 120 (372)
T COG4948 65 LAPLLI--GRDPFDIERIWQKLYRA-GFARRGGITMAAISAVDIALWDLAGKALGVPVY 120 (372)
T ss_pred HHHHhc--CCCHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHHHHHHhHcCCcHH
Confidence 577888 88888877754444432 111122223468999999999999999999987
No 26
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.00 E-value=0.37 Score=35.75 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=38.0
Q ss_pred hhhhhHHhCCCCcccHHHH-HHHHHhhhCCCC-C--C-ccc--hHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEI-DEFMIKLDGTEN-K--S-KFG--ANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~i-D~~L~~lDgT~n-k--s-~lG--aNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.+.+.+ .++-..+.+... . . +-| ..++-|+-+|+-=..++..|+|+|
T Consensus 67 ~lap~li--G~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~ 131 (415)
T cd03324 67 ALAHLVV--GRDLESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLW 131 (415)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHH
Confidence 4789999 8999887443 222222322100 0 0 111 358899999999999999999987
No 27
>PRK14017 galactonate dehydratase; Provisional
Probab=90.60 E-value=0.4 Score=34.65 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=39.4
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCC-ccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKS-KFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks-~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
.++|.|+ |.++.|.+.+-+.|... +-... .....++-||.+|+-=.-++..|+|+|
T Consensus 47 ~~~p~l~--G~d~~~~~~~~~~l~~~--~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~ 103 (382)
T PRK14017 47 ELADYLI--GKDPRRIEDHWQVMYRG--GFYRGGPILMSAIAGIDQALWDIKGKALGVPVH 103 (382)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHh--cccCCchHHhhHHHHHHHHHHHHhhhhcCCcHH
Confidence 3689999 88888877776666331 10011 112337889999999999999999986
No 28
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=89.87 E-value=0.56 Score=35.15 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=40.0
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhh------CCCCCC---ccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLD------GTENKS---KFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lD------gT~nks---~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.+.+.|-+.|...- +..+-. +...-++-||-||+-=..++..|+|+|
T Consensus 63 ~lap~Li--G~dp~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~ 129 (441)
T TIGR03247 63 DARPLVV--GKPLGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVA 129 (441)
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHH
Confidence 4689999 899988887766554310 100000 012247889999999999999999987
No 29
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=89.65 E-value=0.66 Score=32.86 Aligned_cols=49 Identities=20% Similarity=0.091 Sum_probs=36.8
Q ss_pred hhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 3 LLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 3 i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+.|.|+ | ++.+-+.+-+.|... .-+..++-|+.+|+--+.++..|+|+|
T Consensus 64 ~~~~l~--g-~~~~~~~~~~~~~~~-------~~~~~a~said~AlwDl~gk~~g~Pl~ 112 (324)
T TIGR01928 64 FEPNIN--K-EFEHPSEALELVRSL-------KGTPMAKAGLEMALWDMYHKLPSFSLA 112 (324)
T ss_pred HHHHhc--C-CCCCHHHHHHHHHHc-------cCCcHHHHHHHHHHHHHHHhhhCCcHH
Confidence 567777 7 887777766555332 123458899999999999999999986
No 30
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=88.92 E-value=0.77 Score=33.65 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=37.1
Q ss_pred hhhhhHHhCCCCcccH-------HHHHHHHHhhhCCCCCCc--cchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQ-------KEIDEFMIKLDGTENKSK--FGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ-------~~iD~~L~~lDgT~nks~--lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.|+.+. -.+.++..++-....... ....++-|+.||+-=..++..|+|+|
T Consensus 64 ~~~p~Li--G~dp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~ 130 (385)
T cd03326 64 RFIPRLL--AAAPDSLLDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLY 130 (385)
T ss_pred HHHHHhc--CCChHHhhhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHH
Confidence 4789999 8999854 012233333321111111 12347889999999999999999987
No 31
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=87.70 E-value=1.5 Score=30.61 Aligned_cols=50 Identities=22% Similarity=0.200 Sum_probs=35.5
Q ss_pred hhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 3 LLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 3 i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
++|.|+ |.|+. .+.+-+.|... + .-+..++-++.+|+.-+.++..|+|+|
T Consensus 64 ~~~~l~--G~~~~-~~~~~~~l~~~--~----~~~~~a~~aid~AlwDl~gk~~g~pv~ 113 (316)
T cd03319 64 VRPALI--GGDPR-LEKLLEALQEL--L----PGNGAARAAVDIALWDLEAKLLGLPLY 113 (316)
T ss_pred HHHHhc--CCCch-HHHHHHHHHHh--c----cCChHHHHHHHHHHHHHHHHHcCCcHH
Confidence 368888 77776 55544444332 1 114458899999999999999999986
No 32
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=87.60 E-value=1.1 Score=32.01 Aligned_cols=52 Identities=29% Similarity=0.201 Sum_probs=36.0
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+++|.|+ |.++.+...+-+.|...- .-+..++-||.+|+--+.++..|+|+|
T Consensus 69 ~~~~~l~--G~~~~~~~~~~~~~~~~~------~~~~~a~said~AlwDl~gK~~g~Pv~ 120 (368)
T TIGR02534 69 YLAPVLV--GRDATEIAAIMADLEKVV------AGNRFAKAAVDTALHDAQARRLGVPVS 120 (368)
T ss_pred hhHHHHc--CCChhhHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHcCCcHH
Confidence 3678888 788876544433332210 112237899999999999999999986
No 33
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=87.37 E-value=1.3 Score=29.98 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=33.3
Q ss_pred hhhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhhCC
Q psy9117 2 YLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGV 58 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~~~ 58 (61)
.|.|.|+ |.|.+.-++.=..+-++ .+-.++..-.=.+||.|+-.|+|..++.
T Consensus 96 ~v~p~L~--g~d~~~Fr~~a~~~d~~---~~g~rlhtAiRYGvsQALL~A~A~a~~~ 147 (159)
T PF05034_consen 96 EVAPRLV--GRDLSSFRENAEKFDEL---VDGKRLHTAIRYGVSQALLDAAAKAQRT 147 (159)
T ss_dssp HTHHHHT--T-B-S-CHHHHHHHHH----ETTEE--HHHHHHHHHHHHHHHHHHCTS
T ss_pred hccHHHc--CCcHHHHHHHHHHHHhc---ccCCcchhHHHHhHHHHHHHHHHHHcCC
Confidence 4789999 78877665544333333 2335788767799999999999998764
No 34
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=66.59 E-value=15 Score=26.91 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=35.9
Q ss_pred hhhhHHhCCCCcc-c-HHHHHHHHHhhhCCCCCCccc---------hHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 3 LLFNLVTLSFEVT-Q-QKEIDEFMIKLDGTENKSKFG---------ANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 3 i~p~L~~~g~~~~-d-Q~~iD~~L~~lDgT~nks~lG---------aNailavSlA~a~AaA~~~~~pLy 61 (61)
++|.|+ |.++. + ....+++....-.. ..+.-| ..++-||.+|+-=..++..|+|+|
T Consensus 60 ~~~~ll--g~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~ 126 (395)
T cd03323 60 AARSLV--GGDVFGAYLAVLESVRVAFADR-DAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVA 126 (395)
T ss_pred HhHHHh--CCCcchhhHHHHHHHHHHHhcc-cccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHH
Confidence 467888 66662 3 34455544433111 111112 467899999999999999999987
No 35
>cd07050 BMC_EutL_repeat2 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 2 (the second BMC domain of EutL).
Probab=63.48 E-value=6.1 Score=24.38 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhh-------CCCCCCccchHHHHHHHHHHHHHHHHh
Q psy9117 17 QKEIDEFMIKLD-------GTENKSKFGANAILGVSLAVAKAGAAK 55 (61)
Q Consensus 17 Q~~iD~~L~~lD-------gT~nks~lGaNailavSlA~a~AaA~~ 55 (61)
-..+|..|...| |.|...+.|+ +.|.=|.+.|||+...
T Consensus 29 ~y~lDaALKAAdV~~~~~~~PPSetNfgG-alLtGsqsAC~aAc~A 73 (87)
T cd07050 29 MYGLDAALKAADVELATFFPPPSETNFGG-ALLTGSQSACKAACNA 73 (87)
T ss_pred HHHHHHHHHhhceeeEeeeCCCccccccc-eeeecCHHHHHHHHHH
Confidence 356888888766 8888889987 7888899999988764
No 36
>PF06545 DUF1116: Protein of unknown function (DUF1116); InterPro: IPR009499 This family contains hypothetical bacterial proteins of unknown function.; PDB: 3CLQ_A.
Probab=50.79 E-value=20 Score=25.28 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=25.5
Q ss_pred hhhhHHhCCCCcccHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHHhh
Q psy9117 3 LLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKK 56 (61)
Q Consensus 3 i~p~L~~~g~~~~dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a~AaA~~~ 56 (61)
|+|.+...+.+..+.+++.+ -+.+++ .-.|-++||.||+.....
T Consensus 114 L~P~l~~~~~~~~~~~~v~~---fl~~nd-------~FFLnl~MAa~K~~~daa 157 (216)
T PF06545_consen 114 LAPALVDTDFPKDDKAEVLE---FLASND-------HFFLNLSMAACKAMMDAA 157 (216)
T ss_dssp HHHHHHTSSS-HHHHHHHHH---HHTS-T-------TTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCChHHHHHHHH---HHhcCC-------ceeehHHHHHHHHHHHHh
Confidence 67888744444444444444 444433 246789999999766544
No 37
>PRK02877 hypothetical protein; Provisional
Probab=44.72 E-value=2 Score=26.87 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=18.5
Q ss_pred cHHHHHHHHHhhhCCCCCCccchHHHHHHHHH
Q psy9117 16 QQKEIDEFMIKLDGTENKSKFGANAILGVSLA 47 (61)
Q Consensus 16 dQ~~iD~~L~~lDgT~nks~lGaNailavSlA 47 (61)
.++.++++..+. .++||||++++.+.
T Consensus 58 R~~A~~rm~~~A------~~lGAnAVIgvr~d 83 (106)
T PRK02877 58 REIAFEELGEQA------RALGADAVVGIDID 83 (106)
T ss_pred HHHHHHHHHHHH------HHcCCCEEEEEEEE
Confidence 445677766666 47899999887544
No 38
>PRK01217 hypothetical protein; Provisional
Probab=44.35 E-value=3.7 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=19.7
Q ss_pred cHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHH
Q psy9117 16 QQKEIDEFMIKLDGTENKSKFGANAILGVSLAVA 49 (61)
Q Consensus 16 dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~a 49 (61)
.++.++++..+.. ++||||+++|.+-..
T Consensus 65 R~eA~~rm~~~A~------~lGAnAVVgvrfd~s 92 (114)
T PRK01217 65 RNQALERMIDHAK------ELGANAVINVRFDSN 92 (114)
T ss_pred HHHHHHHHHHHHH------HcCCCEEEEEEEEHH
Confidence 3456777776664 799999998765443
No 39
>PF12431 CitT: Transcriptional regulator
Probab=44.21 E-value=17 Score=17.87 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=9.5
Q ss_pred cHHHHHHHHHhh
Q psy9117 16 QQKEIDEFMIKL 27 (61)
Q Consensus 16 dQ~~iD~~L~~l 27 (61)
+|..||+++..-
T Consensus 2 ~Q~~VD~lf~~~ 13 (30)
T PF12431_consen 2 DQSDVDALFNSQ 13 (30)
T ss_pred CHHHHHHHHCcc
Confidence 799999887643
No 40
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.48 E-value=18 Score=20.60 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=13.9
Q ss_pred CCCcccHHHHHHHHHh
Q psy9117 11 SFEVTQQKEIDEFMIK 26 (61)
Q Consensus 11 g~~~~dQ~~iD~~L~~ 26 (61)
.+++.||+.+|+.|..
T Consensus 3 rL~pEDQ~~Vd~yL~a 18 (55)
T PF11293_consen 3 RLNPEDQQRVDEYLQA 18 (55)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 4789999999999875
No 41
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=41.03 E-value=46 Score=20.29 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.1
Q ss_pred CcccHHHHHHHHHhhhCC
Q psy9117 13 EVTQQKEIDEFMIKLDGT 30 (61)
Q Consensus 13 ~~~dQ~~iD~~L~~lDgT 30 (61)
+..|+..||++|.++|.-
T Consensus 43 ~~~d~~~vd~im~~LD~n 60 (91)
T cd05024 43 NQNDPMAVDKIMKDLDDC 60 (91)
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 466899999999999853
No 42
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=40.62 E-value=20 Score=24.46 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhCCCCC
Q psy9117 42 LGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 42 lavSlA~a~AaA~~~~~pLy 61 (61)
+=|++++||.-|..+++|+|
T Consensus 74 lRIG~~~AkgLA~~l~iplv 93 (220)
T COG1214 74 LRIGVAFAKGLALALNIPLV 93 (220)
T ss_pred hhhHHHHHHHHHHHcCCCEE
Confidence 44788999999999999985
No 43
>COG3856 Sbp Uncharacterized conserved protein (small basic protein) [Function unknown]
Probab=39.85 E-value=26 Score=22.48 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=17.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 35 KFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 35 ~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
..=.|.++|+|++.. ...+|+|+|
T Consensus 61 gFffNiilA~~lvyl---Gd~LGv~~y 84 (113)
T COG3856 61 GFFFNIILAASLVYL---GDQLGVDLY 84 (113)
T ss_pred HHHHHHHHHHHHHHH---hhhcCcchH
Confidence 345699999999874 356666665
No 44
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=37.59 E-value=28 Score=21.14 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.1
Q ss_pred CCcccHHHHHHHHHhhhCCCCC
Q psy9117 12 FEVTQQKEIDEFMIKLDGTENK 33 (61)
Q Consensus 12 ~~~~dQ~~iD~~L~~lDgT~nk 33 (61)
.+..+|.++|+.+.-+|-+++-
T Consensus 48 iPl~~Q~DLDkAie~ld~s~~~ 69 (79)
T cd06405 48 IPLKNQEDLDRAIELLDRSPHM 69 (79)
T ss_pred EeccCHHHHHHHHHHHccCccc
Confidence 4678999999999999976653
No 45
>PRK12855 hypothetical protein; Provisional
Probab=37.00 E-value=5.6 Score=24.85 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=18.5
Q ss_pred cHHHHHHHHHhhhCCCCCCccchHHHHHHHHHH
Q psy9117 16 QQKEIDEFMIKLDGTENKSKFGANAILGVSLAV 48 (61)
Q Consensus 16 dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~ 48 (61)
.++.++++..+. .++||||++++.+-.
T Consensus 58 R~~A~~rm~~~A------~~lGAnAVVgvr~d~ 84 (103)
T PRK12855 58 RDIAMEEMKTLA------RQKNANAIVGIDVDY 84 (103)
T ss_pred HHHHHHHHHHHH------HHcCCCEEEEEEEEh
Confidence 345666666665 479999998875543
No 46
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=33.73 E-value=66 Score=28.17 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 36 FGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 36 lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
....+..|+.+|+.-..++..|+|+|
T Consensus 1035 ~~psa~~ald~ALwDl~gk~~g~Pl~ 1060 (1655)
T PLN02980 1035 IFPSVRCGLEMAILNAIAVRHGSSLL 1060 (1655)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCcHH
Confidence 45678999999999999999999986
No 47
>PRK03732 hypothetical protein; Provisional
Probab=33.42 E-value=6.9 Score=24.88 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=18.6
Q ss_pred cHHHHHHHHHhhhCCCCCCccchHHHHHHHHHH
Q psy9117 16 QQKEIDEFMIKLDGTENKSKFGANAILGVSLAV 48 (61)
Q Consensus 16 dQ~~iD~~L~~lDgT~nks~lGaNailavSlA~ 48 (61)
.++.++++..+. .++||||+++|.+-.
T Consensus 65 R~~A~~rm~~~A------~~lGAnAVVgvr~d~ 91 (114)
T PRK03732 65 REEALRRMALHA------KELGANAVVNFRFAT 91 (114)
T ss_pred HHHHHHHHHHHH------HHcCCCEEEEEEEEe
Confidence 345666666666 478999998876543
No 48
>PRK01119 hypothetical protein; Provisional
Probab=33.12 E-value=7.1 Score=24.39 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHH
Q psy9117 17 QKEIDEFMIKLDGTENKSKFGANAILGVSL 46 (61)
Q Consensus 17 Q~~iD~~L~~lDgT~nks~lGaNailavSl 46 (61)
.+.++++..+. .++||||++++.+
T Consensus 59 ~~A~~rm~~~A------~~lGAnAVIgvr~ 82 (106)
T PRK01119 59 EEAIREMEQRA------KDIGANAVIGVDI 82 (106)
T ss_pred HHHHHHHHHHH------HHcCCCEEEEEEE
Confidence 44566666665 4789999988654
No 49
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=31.59 E-value=34 Score=22.65 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC
Q psy9117 40 AILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 40 ailavSlA~a~AaA~~~~~pLy 61 (61)
++.|+.+|+--+.++..|+|+|
T Consensus 43 ~~~aid~Al~Dl~gk~~~~pl~ 64 (229)
T cd00308 43 VISGIDMALWDLAAKALGVPLA 64 (229)
T ss_pred HHHHHHHHHHHHhHhHcCCcHH
Confidence 3889999999999999999986
No 50
>PRK12856 hypothetical protein; Provisional
Probab=31.51 E-value=7.8 Score=24.20 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHHHH
Q psy9117 17 QKEIDEFMIKLDGTENKSKFGANAILGVSLAV 48 (61)
Q Consensus 17 Q~~iD~~L~~lDgT~nks~lGaNailavSlA~ 48 (61)
.+.++++..+. .++|+||++++.+-.
T Consensus 59 ~~A~~rm~~~A------~~lGAnAVvgvr~d~ 84 (103)
T PRK12856 59 DIAMDEMKELA------KQKGANAIVGVDVDY 84 (103)
T ss_pred HHHHHHHHHHH------HHcCCCEEEEEEEEh
Confidence 34555555555 479999998875543
No 51
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=31.07 E-value=8.2 Score=24.58 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHH
Q psy9117 17 QKEIDEFMIKLDGTENKSKFGANAILGVSL 46 (61)
Q Consensus 17 Q~~iD~~L~~lDgT~nks~lGaNailavSl 46 (61)
+..++++..+.+ ++||||+++|-+
T Consensus 59 ~~Al~rm~~~A~------~lGAnAVVgvr~ 82 (108)
T COG0393 59 EEALERMVDEAE------ALGANAVVGVRF 82 (108)
T ss_pred HHHHHHHHHHHH------HhCCCeEEEEEe
Confidence 455666666665 799999887643
No 52
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=29.30 E-value=4.2 Score=24.42 Aligned_cols=13 Identities=8% Similarity=0.273 Sum_probs=10.4
Q ss_pred CccchHHHHHHHH
Q psy9117 34 SKFGANAILGVSL 46 (61)
Q Consensus 34 s~lGaNailavSl 46 (61)
.++|+||++++.+
T Consensus 39 ~~lGAnAVVGvr~ 51 (74)
T TIGR03884 39 KAKGGMGLIAFRI 51 (74)
T ss_pred HHcCCCEEEEEEE
Confidence 4789999988754
No 53
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=27.39 E-value=1.1e+02 Score=17.84 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=15.0
Q ss_pred CCCcccHHHHHHHHHhhhCCC
Q psy9117 11 SFEVTQQKEIDEFMIKLDGTE 31 (61)
Q Consensus 11 g~~~~dQ~~iD~~L~~lDgT~ 31 (61)
|.. .++.++|+++.++|+..
T Consensus 45 g~~-~~~~~v~~~i~~~D~n~ 64 (88)
T cd05027 45 EEI-KEQEVVDKVMETLDSDG 64 (88)
T ss_pred cCC-CCHHHHHHHHHHhCCCC
Confidence 444 46788999999998644
No 54
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=27.15 E-value=54 Score=21.83 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhCCCC
Q psy9117 17 QKEIDEFMIKLDGTEN 32 (61)
Q Consensus 17 Q~~iD~~L~~lDgT~n 32 (61)
|.+||.+++..|-++|
T Consensus 77 ~aKLDElir~~~e~~n 92 (141)
T COG5478 77 QAKLDELIRSLREARN 92 (141)
T ss_pred HHHHHHHHHHhccccC
Confidence 6788888888776666
No 55
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=26.33 E-value=76 Score=20.91 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 37 GANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 37 GaNailavSlA~a~AaA~~~~~pLy 61 (61)
|.=+-+=|++++||.=|...++|++
T Consensus 65 GSfTGlRig~~~akgla~~~~~p~~ 89 (202)
T TIGR03725 65 GSFTGLRIGLATAKGLALALGIPLV 89 (202)
T ss_pred ChHHhHHHHHHHHHHHHHHhCCCEE
Confidence 4444456889999999999999985
No 56
>PF06947 DUF1290: Protein of unknown function (DUF1290); InterPro: IPR009709 This family consists of several bacterial small basic proteins of around 100 residues in length. The function of this family is unknown.
Probab=25.37 E-value=61 Score=20.02 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=17.3
Q ss_pred CccchHHHHHHHHHHHHHHHHhhCCCCC
Q psy9117 34 SKFGANAILGVSLAVAKAGAAKKGVPLY 61 (61)
Q Consensus 34 s~lGaNailavSlA~a~AaA~~~~~pLy 61 (61)
+..=.|+++|+-++.- ....|+|||
T Consensus 40 sgFf~N~~lAa~L~~l---Gd~LGv~Ly 64 (88)
T PF06947_consen 40 SGFFSNVLLAALLVYL---GDRLGVDLY 64 (88)
T ss_pred ehhHHHHHHHHHHHHH---HhhcCchhH
Confidence 3345799999888764 456666665
No 57
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=25.00 E-value=54 Score=23.04 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.0
Q ss_pred cccHHHHHHHHHhhhC
Q psy9117 14 VTQQKEIDEFMIKLDG 29 (61)
Q Consensus 14 ~~dQ~~iD~~L~~lDg 29 (61)
...|++||.+|..+++
T Consensus 2 ~Lsq~EIdaLl~~~~~ 17 (320)
T TIGR01397 2 ILSQDEIDALLGGLSE 17 (320)
T ss_pred CCCHHHHHHHHhcccC
Confidence 4679999999987743
No 58
>PRK00967 hypothetical protein; Provisional
Probab=22.05 E-value=15 Score=22.76 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhCCCCCCccchHHHHHHHH
Q psy9117 17 QKEIDEFMIKLDGTENKSKFGANAILGVSL 46 (61)
Q Consensus 17 Q~~iD~~L~~lDgT~nks~lGaNailavSl 46 (61)
++.++++..+. .++||||++++.+
T Consensus 59 ~eA~~rm~~~A------~~~GAnAIIgvr~ 82 (105)
T PRK00967 59 DIAIDRMKEEA------KQKGANAIVGMRF 82 (105)
T ss_pred HHHHHHHHHHH------HHcCCCEEEEEEE
Confidence 44555555555 4689999988654
No 59
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=20.37 E-value=1.5e+02 Score=17.20 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=19.6
Q ss_pred hhhhhHHhCCCCcccHHH-HHHHHHhhhCCCCCCc
Q psy9117 2 YLLFNLVTLSFEVTQQKE-IDEFMIKLDGTENKSK 35 (61)
Q Consensus 2 ~i~p~L~~~g~~~~dQ~~-iD~~L~~lDgT~nks~ 35 (61)
|++..|. .++..+.+. ||+++-.+++.+-.|.
T Consensus 27 ~l~~~l~--~~~~~e~e~~l~~Ii~~v~kq~Lss~ 59 (73)
T PF12213_consen 27 YLAEQLQ--SLSEEEREDWLDKIIDAVQKQPLSSS 59 (73)
T ss_dssp HHHHHTT--TS-TTTHHHHHHHHHHHHTTS--SSS
T ss_pred HHHHHHc--cCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4555665 566666554 9999999987654443
Done!