RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9117
(61 letters)
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 102 bits (256), Expect = 5e-28
Identities = 35/50 (70%), Positives = 41/50 (82%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+VT Q+ ID+ +I+LDGT NKSK GANAILGVSLAVAKA AA G+PLY
Sbjct: 77 MDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLY 126
>gnl|CDD|202827 pfam03952, Enolase_N, Enolase, N-terminal domain.
Length = 132
Score = 95.6 bits (239), Expect = 1e-27
Identities = 32/50 (64%), Positives = 38/50 (76%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ Q+ ID+ +I+LDGT NKSK GANAIL VSLAVAKA AA G+PLY
Sbjct: 80 MDARDQRAIDKTLIELDGTPNKSKLGANAILAVSLAVAKAAAAALGLPLY 129
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 96.3 bits (241), Expect = 1e-25
Identities = 33/50 (66%), Positives = 38/50 (76%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ Q+ ID+ MI+LDGT NKSK GANAILGVSLAVAKA A G+PLY
Sbjct: 82 LDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLY 131
>gnl|CDD|215095 PLN00191, PLN00191, enolase.
Length = 457
Score = 90.9 bits (226), Expect = 1e-23
Identities = 35/49 (71%), Positives = 40/49 (81%)
Query: 13 EVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ T Q +ID FM++LDGT NK K GANAIL VSLAV KAGAA+KGVPLY
Sbjct: 105 DPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLY 153
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 88.8 bits (221), Expect = 4e-23
Identities = 35/50 (70%), Positives = 39/50 (78%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ T Q ID +I+LDGTENKSK GANAILGVSLAVAKA AA G+PLY
Sbjct: 81 LDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLY 130
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 82.4 bits (204), Expect = 1e-20
Identities = 33/50 (66%), Positives = 40/50 (80%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ T Q+EID+ +I+LDGT NKSK GANAILGVS+AVAKA A G+PLY
Sbjct: 79 MDATDQREIDQILIELDGTPNKSKLGANAILGVSMAVAKAAADSLGLPLY 128
>gnl|CDD|240259 PTZ00081, PTZ00081, enolase; Provisional.
Length = 439
Score = 79.3 bits (196), Expect = 1e-19
Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 6/56 (10%)
Query: 12 FEVTQQKEIDEFMIK-LDGTEN-----KSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+VT QK++D+ M++ LDGT+N KSK GANAIL VS+AVA+A AA KGVPLY
Sbjct: 81 KDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLY 136
>gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional.
Length = 341
Score = 56.4 bits (136), Expect = 2e-11
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 10 LSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ F+ ++Q+ ID ++ ++DGTE+ S GAN L VS+AVAKA A K +PLY
Sbjct: 65 IGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLY 116
>gnl|CDD|146106 pfam03302, VSP, Giardia variant-specific surface protein.
Length = 397
Score = 28.0 bits (62), Expect = 0.20
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 23 FMIKLDGTENKSKFGANAILGVSLAV 48
++IK G+ NKS AI G+S+AV
Sbjct: 351 YLIKDSGSTNKSGLSTGAIAGISVAV 376
>gnl|CDD|221318 pfam11925, DUF3443, Protein of unknown function (DUF3443). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 400 to 434 amino acids in
length. This protein has two conserved sequence motifs:
NPV and DNNG.
Length = 369
Score = 25.7 bits (57), Expect = 1.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 36 FGANAILGVSLAVAKAGAA 54
GAN ILG+ L GAA
Sbjct: 139 LGANGILGIGLFPQDCGAA 157
>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Sorbitol dehydrogenase is tetrameric and has a single
catalytic zinc per subunit. Aldose reductase catalyzes
the NADP(H)-dependent conversion of glucose to sorbital,
and SDH uses NAD(H) in the conversion of sorbitol to
fructose. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 343
Score = 24.0 bits (53), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 36 FGANAILGVSLAVAKAGAAKKGV 58
FGA I ++ AVAKA A K V
Sbjct: 169 FGAGPIGLLTAAVAKAFGATKVV 191
>gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate
synthase. This model represents the FolC family of
folate pathway proteins. Most examples are bifunctional,
active as both folylpolyglutamate synthetase (EC
6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12).
The two activities are similar - ATP + glutamate +
dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP +
orthophosphate + dihydrofolate or
tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC
gene of E. coli suggests that both activities belong to
the same active site. Because some examples are
monofunctional (and these cannot be separated
phylogenetically), the model is treated as subfamily,
not equivalog [Biosynthesis of cofactors, prosthetic
groups, and carriers, Folic acid].
Length = 398
Score = 23.8 bits (52), Expect = 6.0
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 40 AILGVSL---AVAKAGAAKKGVPLY 61
ILG +L A KAG K+GVP+
Sbjct: 146 EILGDTLEEIAWEKAGIIKEGVPIV 170
>gnl|CDD|183759 PRK12804, PRK12804, flagellin; Provisional.
Length = 301
Score = 23.4 bits (50), Expect = 9.2
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 17 QKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGV 58
Q EI + ++DG ++++F +L + A A K +
Sbjct: 112 QDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPAAGTKSL 153
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.360
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,922,561
Number of extensions: 202179
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 14
Length of query: 61
Length of database: 10,937,602
Length adjustment: 32
Effective length of query: 29
Effective length of database: 9,518,274
Effective search space: 276029946
Effective search space used: 276029946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)