RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9117
(61 letters)
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 109 bits (276), Expect = 7e-31
Identities = 34/55 (61%), Positives = 42/55 (76%)
Query: 7 LVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
V + +V QK +D+F+I LDGT NKSK GANAILGVSLA ++A AA+K VPLY
Sbjct: 76 FVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLY 130
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 109 bits (275), Expect = 1e-30
Identities = 35/55 (63%), Positives = 46/55 (83%)
Query: 7 LVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
L++ V +Q+++D M++LDGTENKSKFGANAILGVSLAV KAGAA++ +PLY
Sbjct: 76 LISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLY 130
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 106 bits (267), Expect = 1e-29
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
V Q E+DE MIKLDGT NK K GANAILG S+++ +A AA+KG+PLY
Sbjct: 85 KNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAAEKGLPLY 134
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 105 bits (264), Expect = 3e-29
Identities = 30/50 (60%), Positives = 39/50 (78%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ +Q+E+D M++LDGT NK K GANAILG S+A++KA AA KGVPLY
Sbjct: 83 RDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLY 132
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 101 bits (255), Expect = 6e-28
Identities = 32/50 (64%), Positives = 38/50 (76%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
++ Q+EID MI+LDGT NKS+ GANAIL VSLAVAKA AA +PLY
Sbjct: 88 YDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLY 137
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 95.7 bits (239), Expect = 1e-25
Identities = 30/50 (60%), Positives = 36/50 (72%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
++V Q+ ID MI LDGT NK K GANAILGVS+AVA+A A +PLY
Sbjct: 92 YDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLY 141
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 95.3 bits (238), Expect = 1e-25
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ + +D MI DGT++KSKFGANA+L VS+A AKA AA GVPLY
Sbjct: 106 MDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKAAAAALGVPLY 155
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 95.3 bits (238), Expect = 2e-25
Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 6/56 (10%)
Query: 12 FEVTQQKEIDEFMI-KLDGTEN-----KSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ QK ID M+ +LDGT+N KSK GANAILGVS+A +AGAA KG+PLY
Sbjct: 81 KDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVSIACCRAGAASKGLPLY 136
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 95.3 bits (238), Expect = 2e-25
Identities = 35/50 (70%), Positives = 38/50 (76%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ Q ID+ MI LDGTENKSKFGANAIL VSLA AKA AA KG+PLY
Sbjct: 81 KDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLY 130
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 94.5 bits (236), Expect = 2e-25
Identities = 31/50 (62%), Positives = 36/50 (72%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ Q+EID MI+LDGTENK+ GANAILGVSLAVA A A +PLY
Sbjct: 83 QDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYAAANNADLPLY 132
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 94.5 bits (236), Expect = 3e-25
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 12 FEVTQQKEIDEFMIKLDGTENKSKFGANAILGVSLAVAKAGAAKKGVPLY 61
+ Q ++D+ + +LDGT N S GANA LGVS+A A+A AA G+PLY
Sbjct: 84 LDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARAAAAALGMPLY 133
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 26.6 bits (58), Expect = 0.50
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 19 EIDEFMIKLDGTENKSKFGANAI-LGVSLAVAKAGAAKKGVPLY 61
+ D AI G++ A+ A A + V +
Sbjct: 108 NFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMA 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 0.67
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 1 MYLLFNLVTLSFEVTQQKEIDEFMIKLDGTENKSKFGANAILG 43
LF +V L F +QK I+ D T + L
Sbjct: 489 RMTLFRMVFLDFRFLEQK------IRHDSTAWNASGSILNTLQ 525
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 1.1
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 17/71 (23%)
Query: 1 MYLLFNLVTLSFEVTQQ--KEIDEFMIK---------LDGTENKSKFGAN-AILGVSLAV 48
++F + T++ KEI+E L T+ A+ + A
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-----TQPALTLMEKAA 1743
Query: 49 AKAGAAKKGVP 59
+ +K +P
Sbjct: 1744 FEDLKSKGLIP 1754
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 22.7 bits (48), Expect = 9.6
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 18 KEIDEF---MIKLDGTENKSKFGANAI-LGVSLAVAKAGAAKKGVPLY 61
+++D F D A+ G+S A+ A A G
Sbjct: 104 RDVDAFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKT 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.360
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 852,265
Number of extensions: 37518
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 15
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)