Query psy9118
Match_columns 293
No_of_seqs 196 out of 1583
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 19:22:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03406 Band_7_3 A subgroup of 100.0 1.6E-46 3.6E-51 337.4 28.0 229 65-293 1-229 (280)
2 PRK11029 FtsH protease regulat 100.0 2.7E-39 5.8E-44 297.4 30.7 219 57-279 8-288 (334)
3 PRK10930 FtsH protease regulat 100.0 1.9E-38 4.1E-43 299.2 31.1 225 56-286 84-324 (419)
4 KOG2962|consensus 100.0 9.4E-39 2E-43 270.3 24.6 241 53-293 7-247 (322)
5 TIGR01932 hflC HflC protein. H 100.0 9.4E-38 2E-42 287.4 29.1 214 57-277 8-276 (317)
6 cd03405 Band_7_HflC Band_7_Hfl 100.0 2.5E-36 5.3E-41 268.4 27.0 202 69-277 1-221 (242)
7 cd03404 Band_7_HflK Band_7_Hfl 100.0 5.2E-36 1.1E-40 269.9 28.2 216 57-278 3-235 (266)
8 cd03401 Band_7_prohibitin Band 100.0 2.7E-36 6E-41 259.8 24.2 195 68-271 1-196 (196)
9 TIGR01933 hflK HflK protein. H 100.0 5.2E-35 1.1E-39 262.8 26.8 202 69-276 1-217 (261)
10 cd03407 Band_7_4 A subgroup of 100.0 2.4E-33 5.2E-38 252.1 25.9 201 74-282 1-206 (262)
11 cd03403 Band_7_stomatin_like B 100.0 1.6E-32 3.5E-37 239.7 25.0 184 72-272 1-186 (215)
12 cd03402 Band_7_2 A subgroup of 100.0 1.7E-32 3.7E-37 239.7 20.6 169 68-246 1-176 (219)
13 COG0330 HflC Membrane protease 100.0 5.4E-31 1.2E-35 240.2 27.5 206 57-278 9-221 (291)
14 smart00244 PHB prohibitin homo 100.0 1.5E-28 3.3E-33 204.0 19.0 159 67-232 1-159 (160)
15 KOG2620|consensus 100.0 2.3E-30 5E-35 223.2 6.6 203 67-284 5-211 (301)
16 KOG3090|consensus 100.0 2.5E-27 5.4E-32 200.1 20.7 215 56-279 25-240 (290)
17 KOG2621|consensus 100.0 3.8E-28 8.2E-33 211.8 16.3 191 61-277 47-238 (288)
18 PF01145 Band_7: SPFH domain / 99.9 1.9E-27 4.2E-32 200.7 10.5 158 70-234 1-162 (179)
19 KOG3083|consensus 99.9 8.6E-24 1.9E-28 178.6 13.0 212 57-277 15-227 (271)
20 cd03408 Band_7_5 A subgroup of 99.8 2.2E-19 4.7E-24 155.7 14.7 164 64-230 11-204 (207)
21 COG2268 Uncharacterized protei 99.8 5.1E-17 1.1E-21 155.6 23.4 159 68-230 33-212 (548)
22 cd03400 Band_7_1 A subgroup of 99.8 6.7E-18 1.5E-22 135.0 13.3 120 108-231 3-122 (124)
23 cd03399 Band_7_flotillin Band_ 99.7 1.6E-16 3.5E-21 127.7 12.0 119 108-229 2-124 (128)
24 KOG2668|consensus 99.7 2.4E-15 5.1E-20 135.0 19.2 208 68-288 1-218 (428)
25 cd02106 Band_7 The band 7 doma 99.5 1.7E-12 3.7E-17 101.7 14.1 116 110-231 4-119 (121)
26 PF13421 Band_7_1: SPFH domain 99.3 7.1E-10 1.5E-14 96.5 18.4 162 66-231 13-205 (211)
27 COG4260 Membrane protease subu 98.7 1.1E-06 2.3E-11 77.9 15.2 164 65-231 37-232 (345)
28 PTZ00491 major vault protein; 98.0 0.0011 2.4E-08 67.3 20.7 159 70-230 465-650 (850)
29 PF12127 YdfA_immunity: SigmaW 95.6 0.33 7.1E-06 43.5 12.6 108 115-234 127-234 (316)
30 PRK13665 hypothetical protein; 95.6 0.12 2.5E-06 46.1 9.5 109 114-234 131-239 (316)
31 cd03405 Band_7_HflC Band_7_Hfl 94.8 0.44 9.6E-06 42.0 11.2 168 99-278 24-211 (242)
32 PRK11029 FtsH protease regulat 94.5 1.7 3.7E-05 40.5 14.7 64 213-279 202-266 (334)
33 PRK12785 fliL flagellar basal 93.3 2.4 5.3E-05 35.4 12.1 53 163-219 110-163 (166)
34 cd03404 Band_7_HflK Band_7_Hfl 92.9 0.73 1.6E-05 41.3 9.1 31 248-278 216-246 (266)
35 TIGR01932 hflC HflC protein. H 92.7 4.3 9.3E-05 37.6 14.0 36 242-277 219-254 (317)
36 PRK07718 fliL flagellar basal 92.5 3.9 8.4E-05 33.3 12.0 52 164-219 87-139 (142)
37 cd03407 Band_7_4 A subgroup of 92.4 0.8 1.7E-05 41.1 8.7 31 246-276 181-211 (262)
38 COG1580 FliL Flagellar basal b 92.1 0.59 1.3E-05 38.9 6.7 55 163-220 102-157 (159)
39 PRK07021 fliL flagellar basal 91.6 6.9 0.00015 32.5 13.8 56 164-219 103-159 (162)
40 PF03748 FliL: Flagellar basal 89.8 1.1 2.3E-05 33.6 5.9 53 163-219 43-96 (99)
41 TIGR01933 hflK HflK protein. H 88.7 3.3 7.1E-05 37.0 9.1 81 192-276 114-195 (261)
42 PRK10930 FtsH protease regulat 87.4 3.8 8.2E-05 39.5 9.1 81 192-275 210-290 (419)
43 PTZ00491 major vault protein; 85.8 3.9 8.5E-05 42.4 8.6 37 251-287 719-755 (850)
44 COG4864 Uncharacterized protei 82.8 11 0.00025 32.9 8.9 94 123-228 139-232 (328)
45 PF11978 MVP_shoulder: Shoulde 79.9 13 0.00029 29.1 7.5 101 121-221 10-116 (118)
46 PRK05697 flagellar basal body- 79.6 7.2 0.00016 31.5 6.4 56 164-219 78-134 (137)
47 cd03403 Band_7_stomatin_like B 79.6 6.6 0.00014 33.7 6.7 30 251-280 154-183 (215)
48 PRK06654 fliL flagellar basal 76.9 45 0.00098 28.3 11.3 51 163-219 126-176 (181)
49 PRK08455 fliL flagellar basal 69.8 15 0.00033 31.1 6.2 53 163-219 126-179 (182)
50 PRK05696 fliL flagellar basal 69.3 18 0.00039 30.2 6.5 56 163-219 110-167 (170)
51 COG0330 HflC Membrane protease 66.7 31 0.00068 31.1 8.1 63 207-270 162-224 (291)
52 PRK09174 F0F1 ATP synthase sub 60.0 1.1E+02 0.0024 26.3 9.8 16 180-195 79-94 (204)
53 PRK00753 psbL photosystem II r 57.4 14 0.0003 22.7 2.6 25 46-70 13-37 (39)
54 PRK06231 F0F1 ATP synthase sub 57.0 1.3E+02 0.0028 26.0 10.7 18 179-196 73-90 (205)
55 PRK14474 F0F1 ATP synthase sub 54.9 1.6E+02 0.0034 26.3 10.5 17 179-195 30-46 (250)
56 PF07946 DUF1682: Protein of u 54.5 70 0.0015 29.6 8.2 11 218-228 249-259 (321)
57 PRK14473 F0F1 ATP synthase sub 50.4 1.4E+02 0.003 24.4 10.5 17 179-195 33-49 (164)
58 CHL00038 psbL photosystem II p 48.6 21 0.00046 21.9 2.4 25 46-70 12-36 (38)
59 PRK14472 F0F1 ATP synthase sub 46.4 1.7E+02 0.0037 24.3 10.5 17 179-195 43-59 (175)
60 PRK14475 F0F1 ATP synthase sub 46.2 1.7E+02 0.0037 24.2 10.7 37 252-288 99-135 (167)
61 PF03954 Lectin_N: Hepatic lec 46.0 24 0.00052 28.5 3.1 16 29-46 19-34 (138)
62 CHL00019 atpF ATP synthase CF0 45.4 1.8E+02 0.004 24.3 10.5 19 177-195 47-65 (184)
63 PF06936 Selenoprotein_S: Sele 44.6 1.9E+02 0.004 24.8 8.5 20 196-217 27-46 (190)
64 TIGR01147 V_ATP_synt_G vacuola 44.5 1.5E+02 0.0033 23.1 9.3 30 262-291 47-84 (113)
65 KOG2668|consensus 43.7 1.8E+02 0.0039 27.4 8.7 11 92-102 55-65 (428)
66 PRK13453 F0F1 ATP synthase sub 42.9 2E+02 0.0042 23.9 10.5 18 178-195 42-59 (173)
67 TIGR03321 alt_F1F0_F0_B altern 42.8 2.4E+02 0.0051 24.9 10.1 17 179-195 30-46 (246)
68 PRK07352 F0F1 ATP synthase sub 42.4 2E+02 0.0043 23.9 10.3 17 179-195 44-60 (174)
69 PRK14475 F0F1 ATP synthase sub 42.3 2E+02 0.0042 23.8 10.1 17 179-195 35-51 (167)
70 PF02419 PsbL: PsbL protein; 42.2 16 0.00035 22.3 1.2 24 47-70 12-35 (37)
71 PRK04057 30S ribosomal protein 39.2 2.4E+02 0.0052 24.4 8.5 85 120-218 100-185 (203)
72 PRK13461 F0F1 ATP synthase sub 38.9 2.1E+02 0.0046 23.2 10.5 18 178-195 29-46 (159)
73 PRK06568 F0F1 ATP synthase sub 38.3 2.3E+02 0.0049 23.4 10.8 18 178-195 28-45 (154)
74 PRK08475 F0F1 ATP synthase sub 38.1 2.3E+02 0.005 23.4 10.1 18 178-195 46-63 (167)
75 PRK13460 F0F1 ATP synthase sub 37.6 2.4E+02 0.0051 23.4 10.5 17 179-195 41-57 (173)
76 PRK13428 F0F1 ATP synthase sub 37.3 4E+02 0.0086 25.9 10.7 17 179-195 26-42 (445)
77 KOG2072|consensus 34.7 3.2E+02 0.007 28.8 9.7 23 259-281 608-630 (988)
78 PTZ00399 cysteinyl-tRNA-synthe 33.4 3.9E+02 0.0084 27.5 10.3 18 195-214 520-538 (651)
79 PRK07353 F0F1 ATP synthase sub 33.3 2.4E+02 0.0052 22.2 10.5 17 179-195 30-46 (140)
80 COG2268 Uncharacterized protei 32.6 3.6E+02 0.0078 27.1 9.5 21 78-101 61-81 (548)
81 PRK08475 F0F1 ATP synthase sub 31.6 3E+02 0.0065 22.7 10.7 27 262-288 108-135 (167)
82 cd03401 Band_7_prohibitin Band 30.5 1.7E+02 0.0036 24.4 6.2 19 260-278 174-192 (196)
83 PF07172 GRP: Glycine rich pro 30.3 58 0.0013 24.6 2.9 21 47-68 1-21 (95)
84 PRK08404 V-type ATP synthase s 29.8 2.5E+02 0.0054 21.3 10.7 9 265-273 47-55 (103)
85 PRK07352 F0F1 ATP synthase sub 26.7 3.7E+02 0.0079 22.2 10.7 10 263-272 106-115 (174)
86 PRK06569 F0F1 ATP synthase sub 26.7 3.7E+02 0.008 22.2 9.8 20 178-197 34-53 (155)
87 PRK08476 F0F1 ATP synthase sub 26.3 3.4E+02 0.0074 21.7 10.7 19 178-196 31-49 (141)
88 PF11146 DUF2905: Protein of u 26.2 1.1E+02 0.0023 21.4 3.4 22 81-102 25-48 (64)
89 PRK13460 F0F1 ATP synthase sub 25.7 3.8E+02 0.0083 22.1 10.7 16 252-267 105-120 (173)
90 PF06188 HrpE: HrpE/YscL/FliH 24.9 4.1E+02 0.0089 22.5 7.6 8 220-227 15-22 (191)
91 PRK14471 F0F1 ATP synthase sub 24.1 4E+02 0.0086 21.7 10.7 17 179-195 33-49 (164)
92 CHL00118 atpG ATP synthase CF0 23.6 4E+02 0.0087 21.6 10.8 29 252-280 111-139 (156)
93 PF03179 V-ATPase_G: Vacuolar 22.8 3.3E+02 0.0072 20.4 9.4 14 277-290 68-81 (105)
94 PF01015 Ribosomal_S3Ae: Ribos 22.2 3.7E+02 0.008 23.0 6.8 70 120-204 106-175 (194)
95 PRK13455 F0F1 ATP synthase sub 21.9 4.7E+02 0.01 21.8 10.5 67 223-291 78-150 (184)
96 PRK09174 F0F1 ATP synthase sub 21.7 5.2E+02 0.011 22.2 10.8 8 281-288 159-166 (204)
97 PRK14473 F0F1 ATP synthase sub 21.7 4.4E+02 0.0096 21.4 10.7 19 251-269 85-103 (164)
No 1
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.6e-46 Score=337.41 Aligned_cols=229 Identities=79% Similarity=1.197 Sum_probs=216.9
Q ss_pred HhhceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechh
Q psy9118 65 FNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVS 144 (293)
Q Consensus 65 l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~ 144 (293)
+++|+++|++|++||+++||++.+.+++|||||++||+++|..+++++++.+.++..+.|+||.++.+|.+.++|++||+
T Consensus 1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~ 80 (280)
T cd03406 1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPD 80 (280)
T ss_pred CCceEEEECCCeEEEEEECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHH
Confidence 46799999999999999999997678999999999999999999999999988778899999999999987789999999
Q ss_pred cHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChH
Q psy9118 145 SVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPET 224 (293)
Q Consensus 145 ~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~ 224 (293)
++++.+.+|+.++...+|.+.+++++|+++|+++++++++++|+++...+++.+++.++++.+||+|.+|.|++++||++
T Consensus 81 ~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~ 160 (280)
T cd03406 81 SVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEA 160 (280)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHH
Confidence 99999988887777889999999999999999999999987999999999999999999544599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHhhhcC
Q psy9118 225 IRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG 293 (293)
Q Consensus 225 v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~~~~~~~~~~ 293 (293)
+.++|++|.+||++.++|.|.+...+.+||++|.+.+++|+|+|+.++|+.+|+++|||+++.+|.||+
T Consensus 161 V~~aferM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (280)
T cd03406 161 IRRNYELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIED 229 (280)
T ss_pred HHHHHHHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=2.7e-39 Score=297.41 Aligned_cols=219 Identities=22% Similarity=0.326 Sum_probs=181.8
Q ss_pred HHHHHHHHHhhceEEecCCeEEEEEeCCccccc------cccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeE
Q psy9118 57 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLST------ISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMI 130 (293)
Q Consensus 57 ~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~------v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v 130 (293)
+++++++|+++|+++|++|++||+++||++.+. +++|||||++||+++|..+|+|.++++.+.+.++|+|++.|
T Consensus 8 ~~~~~~~~l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V 87 (334)
T PRK11029 8 IIIIVLVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDL 87 (334)
T ss_pred HHHHHHHHHHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEE
Confidence 445567788899999999999999999999853 58999999999999999999999999998888999999999
Q ss_pred EEEEEEEEEEechhcHHHHHHhhcccc--cchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhh-----
Q psy9118 131 YFDRIEVVNVLSVSSVYDIVKNYTADY--DKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELN----- 203 (293)
Q Consensus 131 ~vd~~~v~~~~d~~~i~~~~~~~~~~~--~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~----- 203 (293)
.+|.++.|++.||.+++..+. +.++ ....|++.++++||+++|+++++++++++|+++..++++.+++.+.
T Consensus 88 ~VD~~V~yrI~Dp~~~~~~~~--~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~ 165 (334)
T PRK11029 88 IVDSYIKWRISDFSRYYLATG--GGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDE 165 (334)
T ss_pred EEEEEEEEEECCHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccc
Confidence 999998888889887764321 2222 3578999999999999999999999977899999999999996531
Q ss_pred -----------------------------c---CCCCeEEEEEEecCCCCChHHHHH-HHHHHHHHHHHHHHHHHHH---
Q psy9118 204 -----------------------------E---MAPGLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLLISIQHQK--- 247 (293)
Q Consensus 204 -----------------------------~---~~~GI~I~~v~I~~i~~p~~v~~a-~~~~~ae~~~~~~A~q~~~--- 247 (293)
. .+|||+|.+|.|++++||+++.++ +++|.|||++. |+..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~--a~~~~aege 243 (334)
T PRK11029 166 VATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAV--ARRHRSQGQ 243 (334)
T ss_pred ccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 0 279999999999999999999999 56888988865 211111
Q ss_pred -------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9118 248 -------------VVEKDAETERKRAVIEAEKEAQIAKIQYEQKV 279 (293)
Q Consensus 248 -------------~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~ 279 (293)
..+.+|+|++++.+++|+|+|+++++.+++-.
T Consensus 244 ~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~ 288 (334)
T PRK11029 244 EEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS 288 (334)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 12225888888889999999999998876544
No 3
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.9e-38 Score=299.21 Aligned_cols=225 Identities=14% Similarity=0.164 Sum_probs=185.2
Q ss_pred HHHHHHHHHHhhceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEE
Q psy9118 56 VSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRI 135 (293)
Q Consensus 56 ~~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~ 135 (293)
++++++++|+++|||+|+|+|+|||++||++. .+++|||||++||+++|..+|++.+........++|+|++.|.+|.+
T Consensus 84 i~~~~v~i~l~sg~yiV~e~E~gVV~rFGk~~-~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~ 162 (419)
T PRK10930 84 AAAAVVIIWAASGFYTIKEAERGVVTRFGKFS-HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMN 162 (419)
T ss_pred HHHHHHHHHHHheEEEECCCeEEEEEECCcCc-ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEE
Confidence 44556677899999999999999999999997 79999999999999999999998776555567899999999999999
Q ss_pred EEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEE
Q psy9118 136 EVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVR 215 (293)
Q Consensus 136 ~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~ 215 (293)
+.|++.||.++. |...+.+..|+++++++||+++|+++++++++++|++|..++.+.+++.++.+.+||+|++|.
T Consensus 163 VqYrI~Dp~~~l-----f~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~ 237 (419)
T PRK10930 163 VQYRVTDPEKYL-----FSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVN 237 (419)
T ss_pred EEEEECCHHHHH-----HhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 888888887753 333344678999999999999999999999987899999999999999999666799999999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHHH----HHHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Q psy9118 216 VTKPKIPETIRKNYELMEAEKTKLL----ISIQHQK-----------VVEKDAETERKRAVIEAEKEAQI-AKIQYEQKV 279 (293)
Q Consensus 216 I~~i~~p~~v~~a~~~~~ae~~~~~----~A~q~~~-----------~~e~~AeA~~~~~ii~A~geaea-~~i~~~~~~ 279 (293)
|++++||+++.+||++|.++++... .|+.++. ....+|||++++.+++|+|+|++ ++|..+.+.
T Consensus 238 I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~k 317 (419)
T PRK10930 238 FQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKA 317 (419)
T ss_pred EeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 9999999999999999988776541 1222221 11236788888888888888865 677776665
Q ss_pred HhHHHHH
Q psy9118 280 MEQESKQ 286 (293)
Q Consensus 280 ~e~~~~~ 286 (293)
.-.-+..
T Consensus 318 aP~vtr~ 324 (419)
T PRK10930 318 APEITRE 324 (419)
T ss_pred CHHHHHH
Confidence 5555443
No 4
>KOG2962|consensus
Probab=100.00 E-value=9.4e-39 Score=270.31 Aligned_cols=241 Identities=73% Similarity=1.122 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHhhceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEE
Q psy9118 53 VGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYF 132 (293)
Q Consensus 53 ~~~~~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~v 132 (293)
.++.++.+++.+++++++.|++|++||++|.|.....+.+||+|+++||+.++..+.++.|+-++.+.+|.|+.|+.+.+
T Consensus 7 ~v~~~~a~~~~~~~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyf 86 (322)
T KOG2962|consen 7 LVAAAIALLVAFLSSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYF 86 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCceEEEEecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEE
Confidence 33344455666788899999999999999999988778999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEE
Q psy9118 133 DRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQ 212 (293)
Q Consensus 133 d~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~ 212 (293)
|-+-++++..|+.+++++++|+.+|+..+|.+-+...+...|+.+|+.++|-.-.++|.++++++|+++|.+|..|++|.
T Consensus 87 drIEVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iq 166 (322)
T KOG2962|consen 87 DRIEVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQ 166 (322)
T ss_pred ehhhhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEE
Confidence 98888888889999999999999999999999999999999999999999977889999999999999999999999999
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHhhhc
Q psy9118 213 AVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 292 (293)
Q Consensus 213 ~v~I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~~~~~~~~~ 292 (293)
.|+++....|+.++..|+.|++|+.+.++|.+.+..+|++||.+|+.++++|+..|+.++|..+|++.|||+++.+|.||
T Consensus 167 aVRVTKPkIPEaiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE 246 (322)
T KOG2962|consen 167 AVRVTKPKIPEAIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIE 246 (322)
T ss_pred EEEecCCCChHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy9118 293 G 293 (293)
Q Consensus 293 ~ 293 (293)
+
T Consensus 247 ~ 247 (322)
T KOG2962|consen 247 D 247 (322)
T ss_pred H
Confidence 5
No 5
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=9.4e-38 Score=287.36 Aligned_cols=214 Identities=22% Similarity=0.303 Sum_probs=172.4
Q ss_pred HHHHHHHHHhhceEEecCCeEEEEEeCCcccccc------ccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeE
Q psy9118 57 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTI------SGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMI 130 (293)
Q Consensus 57 ~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v------~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v 130 (293)
+++++++|+++||++|+||++||+++||++.+.. ++|||||++||++++..+|+++++++.+...++|+|++++
T Consensus 8 ~~~~~~~~l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V 87 (317)
T TIGR01932 8 VIVLLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDI 87 (317)
T ss_pred HHHHHHHHHHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEE
Confidence 3445677888999999999999999999997432 4899999999999999999999999988889999999999
Q ss_pred EEEEEEEEEEechhcHHHHHHhhcc---cccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHH-----------------
Q psy9118 131 YFDRIEVVNVLSVSSVYDIVKNYTA---DYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQI----------------- 190 (293)
Q Consensus 131 ~vd~~~v~~~~d~~~i~~~~~~~~~---~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i----------------- 190 (293)
.+|.++.|++.|+.+++ ..++. .+.+..|++.+++++|+++|+|+++++++++|+++
T Consensus 88 ~Vd~~V~yrV~d~~~~~---~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~ 164 (317)
T TIGR01932 88 IIDTYIRWRIEDFKKYY---LSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINK 164 (317)
T ss_pred EEEEEEEEEECCHHHHH---HHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccc
Confidence 99999888777765443 23331 23467899999999999999999999997667666
Q ss_pred ------------HHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHH-HHHHHHHHHHHHHHHHH-----------
Q psy9118 191 ------------DENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNY-ELMEAEKTKLLISIQHQ----------- 246 (293)
Q Consensus 191 ------------~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~-~~~~ae~~~~~~A~q~~----------- 246 (293)
...+.+.+.+.+. +|||+|++|.|++++||+++.+++ ++|.+||++. |.+.+
T Consensus 165 ~~~~~~~~r~~l~~~i~~~~~~~~~--~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~--a~~~r~ege~~a~~i~ 240 (317)
T TIGR01932 165 IAMTITKGREILAREISQIANSQLK--DIGIEVVDVRIKKINYSDELSESIYNRMRSEREQI--ARMHRSQGEEKAEEIL 240 (317)
T ss_pred cccccchhhhhHHHHHHHHHHHHHh--cCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4567777788888 899999999999999999999994 6788887653 22221
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118 247 -----KVVEKDAETERKRAVIEAEKEAQIAKIQYEQ 277 (293)
Q Consensus 247 -----~~~e~~AeA~~~~~ii~A~geaea~~i~~~~ 277 (293)
+.....|+|++++.+++|+|+|+++++.+++
T Consensus 241 a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a 276 (317)
T TIGR01932 241 GKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDA 276 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1122356777778888888888888887664
No 6
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=2.5e-36 Score=268.36 Aligned_cols=202 Identities=19% Similarity=0.275 Sum_probs=166.0
Q ss_pred eEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHH
Q psy9118 69 FHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYD 148 (293)
Q Consensus 69 ~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~ 148 (293)
||+|+||++||+++||++.+.+++||+||++||+++++.+|+++++++.++..++|+|++++.++.++.|++.||.+++.
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~ 80 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQ 80 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHH
Confidence 68999999999999999985579999999999999999999999999888889999999999999998777878765443
Q ss_pred HHHhhcccc--cchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHH
Q psy9118 149 IVKNYTADY--DKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226 (293)
Q Consensus 149 ~~~~~~~~~--~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~ 226 (293)
.++... .+..|.+.+++++|+++|+++++++++++|++|++.+.+.+++.++ +|||+|++|.|.+|+||+++.
T Consensus 81 ---~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~--~~Gi~i~~v~i~~i~~p~~i~ 155 (242)
T cd03405 81 ---AVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAK--ELGIEVVDVRIKRIDLPEEVS 155 (242)
T ss_pred ---HhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHH--ccCcEEEEEEEEeccCCHHHH
Confidence 333221 1478999999999999999999999965599999999999999999 889999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118 227 KNY-ELMEAEKTKLLISIQHQ----------------KVVEKDAETERKRAVIEAEKEAQIAKIQYEQ 277 (293)
Q Consensus 227 ~a~-~~~~ae~~~~~~A~q~~----------------~~~e~~AeA~~~~~ii~A~geaea~~i~~~~ 277 (293)
+++ +++.++|++. |++.+ .....+|+|++++.+++|+|+|+++++.+++
T Consensus 156 ~ai~~~~~ae~~~~--a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a 221 (242)
T cd03405 156 ESVYRRMRAERERI--AAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEA 221 (242)
T ss_pred HHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 996 5677777754 22111 1122366666666777777777777766643
No 7
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=5.2e-36 Score=269.94 Aligned_cols=216 Identities=15% Similarity=0.182 Sum_probs=161.6
Q ss_pred HHHHHHHHHhhceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEE-EeEEEEE------------ecCCcccc
Q psy9118 57 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHV-QVTLQTD------------EVKNVPCG 123 (293)
Q Consensus 57 ~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v-~~r~q~~------------~~~~~~v~ 123 (293)
+++++++|+++||++|+||++|||++||++. .+++||+||++||++++..+ +++.++. ..+...+.
T Consensus 3 ~~~~~~~~~~~s~~~V~~ge~gVV~~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (266)
T cd03404 3 AALLVILWLLSGFYIVQPGERGVVLRFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLML 81 (266)
T ss_pred HHHHHHHHHHcEEEEECCCceEEeEEcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceE
Confidence 3456667888999999999999999999998 79999999999999887544 3432211 11235689
Q ss_pred cCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy9118 124 TSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELN 203 (293)
Q Consensus 124 T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~ 203 (293)
|+||+.+.+|.++.|++.||.++. |+..+.+..|.+.+++++|+++|+++++++++++|+++++.|.+.+++.++
T Consensus 82 T~D~~~v~vd~~v~yrI~d~~~~~-----~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~ 156 (266)
T cd03404 82 TGDENIVDVEFAVQYRISDPYDYL-----FNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILD 156 (266)
T ss_pred eCCCCEEEEEEEEEEEECCHHHHH-----hhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 999999999999888888887542 233334678999999999999999999999965699999999999999999
Q ss_pred cCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9118 204 EMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISI----QHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQK 278 (293)
Q Consensus 204 ~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~ae~~~~~~A~----q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~ 278 (293)
.+.+||+|++|.|++++||+++.++++++.++++....+. ..+.....+|++++++.+++|+|++++..+.++.+
T Consensus 157 ~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~ 235 (266)
T cd03404 157 AYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGE 235 (266)
T ss_pred ccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4445999999999999999999999998877665432111 11111223444444444455555555544444433
No 8
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=2.7e-36 Score=259.81 Aligned_cols=195 Identities=22% Similarity=0.307 Sum_probs=168.6
Q ss_pred ceEEecCCeEEEEEeCCcccc-ccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcH
Q psy9118 68 SFHKIEEGHVGVYFRGGALLS-TISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSV 146 (293)
Q Consensus 68 ~~~~V~~ge~gVv~~~Gk~~~-~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i 146 (293)
||++|++|++||+++||+.+. .+++||+||++||++++..+|++.++++++ ..+.|+|++.|.++.. +.|.+++..+
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~-~~~~t~d~~~V~v~~~-v~y~v~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIE-STTGSKDLQMVNITLR-VLFRPDASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccccceeEEEEeeeeEEEEe-ecccCCCCeEEEEEEE-EEEEeCHHHH
Confidence 689999999999999998764 389999999999999999999999988875 4678999999999866 4555678888
Q ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHH
Q psy9118 147 YDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226 (293)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~ 226 (293)
...+.+|+.++.+..|.+.+++++|+++|+|+++|++ ++|++|++.|.+.+++.+. +|||+|++|.|++++||+++.
T Consensus 79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~-~~R~~i~~~i~~~l~~~l~--~~Gi~i~~v~i~~i~~p~~~~ 155 (196)
T cd03401 79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELI-TQREEVSALIREALTERAK--DFGIILDDVSITHLTFSKEFT 155 (196)
T ss_pred HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHH-hhHHHHHHHHHHHHHHHHH--hCCeEEEEEEEEeccCCHHHH
Confidence 8888888866667789999999999999999999999 6999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy9118 227 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIA 271 (293)
Q Consensus 227 ~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~ 271 (293)
+++++++.+++..++|+ ....+|++++++.+++|+|+|+|+
T Consensus 156 ~ai~~k~~a~q~~~~a~----~~~~~a~~ea~~~~~~A~gea~a~ 196 (196)
T cd03401 156 KAVEAKQVAQQEAERAK----FVVEKAEQEKQAAVIRAEGEAEAA 196 (196)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99987766555442222 233578888888899999999874
No 9
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=5.2e-35 Score=262.81 Aligned_cols=202 Identities=14% Similarity=0.162 Sum_probs=161.4
Q ss_pred eEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHH
Q psy9118 69 FHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYD 148 (293)
Q Consensus 69 ~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~ 148 (293)
+++|+||++||+++||++. .+++||+||++||+++++.+|++.+....+...++|+||+.|.+|.++.|++.||.++.
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~-~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~- 78 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYH-RTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYL- 78 (261)
T ss_pred CEEeCCCeEEEEEEcCccc-cccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHH-
Confidence 5899999999999999997 78999999999999999999997654333344689999999999999888888887642
Q ss_pred HHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHH
Q psy9118 149 IVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKN 228 (293)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a 228 (293)
|+..+....|++.+++++|+++|+++++++++++|++|++.+.+.+++.++.+++||+|++|.|++++||+++.++
T Consensus 79 ----~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a 154 (261)
T TIGR01933 79 ----FSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA 154 (261)
T ss_pred ----HhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence 3444456789999999999999999999999669999999999999999995456999999999999999999999
Q ss_pred HHHHHHHHHHHHH----HHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy9118 229 YELMEAEKTKLLI----SIQHQK-----------VVEKDAETERKRAVIEAEKEAQIAKIQYE 276 (293)
Q Consensus 229 ~~~~~ae~~~~~~----A~q~~~-----------~~e~~AeA~~~~~ii~A~geaea~~i~~~ 276 (293)
|+++.++++.... |+..+. ....+|+|++++.+++|+|+|++..+.++
T Consensus 155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ 217 (261)
T TIGR01933 155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLA 217 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9988776554311 111111 11235666666666777777777666554
No 10
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=2.4e-33 Score=252.09 Aligned_cols=201 Identities=16% Similarity=0.174 Sum_probs=165.1
Q ss_pred CCeEEEEEeCCccccccccCceEEEcCCcCeEE-EEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHh
Q psy9118 74 EGHVGVYFRGGALLSTISGPGFHAMIPFITTFR-HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKN 152 (293)
Q Consensus 74 ~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~-~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~ 152 (293)
+|+.|||++||++. .+++|||||++||++++. .+|+++++++++. .++|+||+.|.+|.++.|++.|+. +...+.+
T Consensus 1 q~~~~Vv~rfGk~~-~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~V~vd~~v~yrI~d~~-~~~~~~~ 77 (262)
T cd03407 1 QSQVAIIERFGKFF-KVAWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVFVTVVGQIQYRVSEEN-ATDAFYK 77 (262)
T ss_pred CcEEEEEeecCccc-ccCCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCEEEEEEEEEEEECCcH-HHHHHHH
Confidence 58999999999998 789999999999999984 8999999999875 579999999999999777776665 2222222
Q ss_pred hcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH-
Q psy9118 153 YTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL- 231 (293)
Q Consensus 153 ~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~- 231 (293)
++ +....|.+.+++++|+++|++++++++ ++|+.|+..+.+.+++.++ +|||.|++|.|++++||+++.+++++
T Consensus 78 ~~--~~~~~l~~~~~s~lR~vig~~~l~eil-~~R~~I~~~i~~~l~~~l~--~~GI~V~~v~I~~i~~p~~v~~A~~~~ 152 (262)
T cd03407 78 LG--NPEEQIQSYVFDVLRARIPKLTLDELF-EQKDEIAKAVEEELREAMS--RYGFEIVATLITDIDPDAEVKRAMNEI 152 (262)
T ss_pred cC--CHHHHHHHHHHHHHHHHhcCccHHHHH-hhHHHHHHHHHHHHHHHHH--hcCcEEEEEEEEecCCCHHHHHHHHHH
Confidence 32 235689999999999999999999999 6899999999999999999 88999999999999999999999765
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhH
Q psy9118 232 MEAEKTKL---LISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQ 282 (293)
Q Consensus 232 ~~ae~~~~---~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~ 282 (293)
+.|++++. .+|+..+.....+|++++++.+++|+|+|++..+.++....+-
T Consensus 153 ~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~ 206 (262)
T cd03407 153 NAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESI 206 (262)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 45555543 1222222234458888888889999999999888887665543
No 11
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=1.6e-32 Score=239.66 Aligned_cols=184 Identities=23% Similarity=0.260 Sum_probs=157.5
Q ss_pred ecCCeEEEEEeCCccccccccCceEEEcCCcCeE-EEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHH
Q psy9118 72 IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTF-RHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIV 150 (293)
Q Consensus 72 V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v-~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~ 150 (293)
|+||++||+++||++. .+++||+||++||++++ +.||++.+++++++.++.|+|++++.++..+.|++.||.++...
T Consensus 1 V~~ge~~Vv~~~G~~~-~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~- 78 (215)
T cd03403 1 VPQYERGVVERLGKYH-RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYG- 78 (215)
T ss_pred CCcceEEEEEEcCcCc-cccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhc-
Confidence 6899999999999998 57999999999999999 99999999999988889999999999999887777788866432
Q ss_pred HhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHH
Q psy9118 151 KNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230 (293)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~ 230 (293)
.++....|.+.+++++|+++|++++++++ ++|+.+++.+.+.+++.+. +|||+|++|.|+++++|+++.++++
T Consensus 79 ----~~~~~~~l~~~~~~~lr~~i~~~~~~el~-~~R~~i~~~i~~~l~~~l~--~~Gi~v~~v~i~~i~~p~~~~~ai~ 151 (215)
T cd03403 79 ----VEDYRYAISQLAQTTLRSVIGKMELDELL-SEREEINAELVEILDEATD--PWGVKVERVEIKDIILPQEIQEAMA 151 (215)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHccccHHHHH-hhHHHHHHHHHHHHHHHHh--ccCeEEEEEEEeeecCCHHHHHHHH
Confidence 22235689999999999999999999999 6999999999999999999 8899999999999999999999976
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy9118 231 -LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAK 272 (293)
Q Consensus 231 -~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~ 272 (293)
++.|++++. ....+|++++++.++.|+|++++..
T Consensus 152 ~~~~A~~~~~--------a~i~~A~ge~~a~~~~aea~~~~~~ 186 (215)
T cd03403 152 KQAEAEREKR--------AKIIEAEGERQAAILLAEAAKQAAI 186 (215)
T ss_pred HHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 445544432 2335777777777788888777654
No 12
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.7e-32 Score=239.69 Aligned_cols=169 Identities=16% Similarity=0.196 Sum_probs=149.3
Q ss_pred ceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHH
Q psy9118 68 SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVY 147 (293)
Q Consensus 68 ~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~ 147 (293)
|+++|+||++||+++||++.+++.+|||||++||++ ...+|+|+++++.+.+.+.|+||+++.++.+++|++.||.++.
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~ 79 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAV 79 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHH
Confidence 689999999999999999986566999999999985 4789999999999988999999999999999989898998874
Q ss_pred HHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHh------hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCC
Q psy9118 148 DIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYI------DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKI 221 (293)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~------~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~ 221 (293)
. +.++....|.+.+++++|+++|+|+++++++ ++|+++++++.+.+++.++ .|||+|.++.|+++.|
T Consensus 80 ~-----~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~--~~GI~V~~v~I~~l~~ 152 (219)
T cd03402 80 F-----NVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLA--VAGVEVVEARITHLAY 152 (219)
T ss_pred H-----HcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHH--hhCcEEEEEEEEeecC
Confidence 3 3333367899999999999999999999985 3589999999999999999 8999999999999999
Q ss_pred ChHHHHH-HHHHHHHHHHHHHHHHHH
Q psy9118 222 PETIRKN-YELMEAEKTKLLISIQHQ 246 (293)
Q Consensus 222 p~~v~~a-~~~~~ae~~~~~~A~q~~ 246 (293)
|+++.+| +++|+|+++.. |++..
T Consensus 153 p~ei~~am~~R~~Ae~~~~--Ar~~~ 176 (219)
T cd03402 153 APEIAQAMLQRQQASAIIA--ARRKI 176 (219)
T ss_pred CHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 9999999 56788887765 54433
No 13
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-31 Score=240.23 Aligned_cols=206 Identities=25% Similarity=0.327 Sum_probs=165.3
Q ss_pred HHHHHHHHHhhceEEecCCeEEEEEeCCcccccccc-CceEEEcCC---c-CeEEEEEeEEEEEec-CCcccccCCCCeE
Q psy9118 57 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISG-PGFHAMIPF---I-TTFRHVQVTLQTDEV-KNVPCGTSGGVMI 130 (293)
Q Consensus 57 ~lv~~l~~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~-pGlh~~~P~---i-~~v~~v~~r~q~~~~-~~~~v~T~D~~~v 130 (293)
+++++++++++++++|+|++.|++++||++. .+++ ||+||++|| + ..+..++.+.++++. +++.+.|+|+..|
T Consensus 9 ~l~~~~~~~~~~~~~v~~~~~~vv~r~G~~~-~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V 87 (291)
T COG0330 9 LLVILIVLLFSSIFVVKEGERGVVLRFGRYT-RTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIV 87 (291)
T ss_pred HHHHHHHHHHceeEEEcCCceEEEEEeccee-eecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEE
Confidence 4566778999999999999999999999998 5777 999999999 3 334677888899999 7899999999999
Q ss_pred EEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeE
Q psy9118 131 YFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLF 210 (293)
Q Consensus 131 ~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~ 210 (293)
.+|.++.|++.|+.+.. |..++....|.+.+++.||+++|++++++++++.+..++..+.+.+++.++ +|||.
T Consensus 88 ~vd~~v~~rv~d~~~~~-----~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~--~~Gi~ 160 (291)
T COG0330 88 SVDAVVQYRVTDPQKAV-----YNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAAD--PWGIK 160 (291)
T ss_pred EEEEEEEEEEcCHHHHH-----HhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhh--hcCcE
Confidence 99999888888888443 233335778999999999999999999999964444999999999999999 89999
Q ss_pred EEEEEecCCCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9118 211 IQAVRVTKPKIPETIRKNY-ELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQK 278 (293)
Q Consensus 211 I~~v~I~~i~~p~~v~~a~-~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~ 278 (293)
|.+|.|++++||+++.+++ ++|.+++++. +.. .+|++++++.+++|+|+++++.+.++..
T Consensus 161 V~~V~i~~i~~p~ev~~a~~~~~~Aer~~r--a~i------~~Ae~~~~~~~~~a~g~~~a~~i~aea~ 221 (291)
T COG0330 161 VVDVEIKDIDPPEEVQAAMEKQMAAERDKR--AEI------LEAEGEAQAAILRAEGEAEAAIILAEAE 221 (291)
T ss_pred EEEEEEeecCCCHHHHHHHHHHHHHHHHHH--HHH------HHhHhHHhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999996 4677776654 222 2444444444455555555555544443
No 14
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.96 E-value=1.5e-28 Score=203.99 Aligned_cols=159 Identities=28% Similarity=0.398 Sum_probs=141.8
Q ss_pred hceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcH
Q psy9118 67 YSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSV 146 (293)
Q Consensus 67 ~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i 146 (293)
+||++|+||++||+++||++. .+++||+||++||++++..+|++.++++.+...+.|+|++++.++..+.|++.||.+.
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~-~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~ 79 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVL-RVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKA 79 (160)
T ss_pred CcEEEEcccEEEEEEecCccc-cccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHH
Confidence 489999999999999999998 4899999999999999999999999999887889999999999999988887888654
Q ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHH
Q psy9118 147 YDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 226 (293)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~ 226 (293)
. +..++.+ ...|++.+++++|+++|+++++++++++|+++++.+.+.+++.++ ++|++|.++.|+++++|+++.
T Consensus 80 ~--~~~~~~~--~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~--~~Gi~i~~v~i~~i~~p~~i~ 153 (160)
T smart00244 80 V--YRVLDAD--YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAE--AWGIEVEDVEIKDIRLPEEIQ 153 (160)
T ss_pred h--hhcCCHH--HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHH--hCCCEEEEEEEEecCCCHHHH
Confidence 2 2222221 258999999999999999999999954799999999999999999 789999999999999999999
Q ss_pred HHHHHH
Q psy9118 227 KNYELM 232 (293)
Q Consensus 227 ~a~~~~ 232 (293)
++++++
T Consensus 154 ~ai~~k 159 (160)
T smart00244 154 EAMEQQ 159 (160)
T ss_pred HHHHhh
Confidence 998753
No 15
>KOG2620|consensus
Probab=99.96 E-value=2.3e-30 Score=223.20 Aligned_cols=203 Identities=17% Similarity=0.196 Sum_probs=167.2
Q ss_pred hceEE--ecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEE-eEEEEEecCCcccccCCCCeEEEEEEEEEEEech
Q psy9118 67 YSFHK--IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQ-VTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSV 143 (293)
Q Consensus 67 ~~~~~--V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~-~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~ 143 (293)
+|+.+ ||+.+++|+.||||+. ++++||+||..|+++++..+. ++-.....+.+...|+|++.+.+|.+++++++||
T Consensus 5 ~n~vi~~VpQ~~a~VvER~GkF~-~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp 83 (301)
T KOG2620|consen 5 TNTVIRFVPQQEAAVVERFGKFH-RILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDP 83 (301)
T ss_pred ceeeEEeechhHhHHHHHhhhhh-hhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecc
Confidence 34444 9999999999999998 899999999999988876443 2222334456788999999999999998899999
Q ss_pred hcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCCh
Q psy9118 144 SSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPE 223 (293)
Q Consensus 144 ~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~ 223 (293)
++- |. +|+..+....|..++++.+|+.+|++|||.++ +.|+.++..|.++|+..+. .||++|....|.||.||+
T Consensus 84 ~~~-dA--sYgvenp~~aI~qlaqttmRsevgkltLD~vF-eer~~ln~sI~eainkA~~--~wG~~clr~eIrDI~pp~ 157 (301)
T KOG2620|consen 84 YAD-DA--SYGVENPEYAIQQLAQTTMRSEVGKLTLDKVF-EERNSLNKSIVEAINKAME--AWGYECLRYEIRDIEPPP 157 (301)
T ss_pred ccc-cc--ccccCCHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHH--HhHHHHHHHhhhhcCCCH
Confidence 984 22 67877777889999999999999999999999 8999999999999999999 999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q psy9118 224 TIRKNYEL-MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQES 284 (293)
Q Consensus 224 ~v~~a~~~-~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~ 284 (293)
.+..||+- .+|||.+. |+ .-++|++|++.|-+|+|++++.-+-.+...+|..+
T Consensus 158 ~V~~AM~~q~~AeR~kr--Aa------ilesEger~~~InrAEGek~s~iL~seg~~~qr~n 211 (301)
T KOG2620|consen 158 SVKRAMNMQNEAERMKR--AA------ILESEGERIAQINRAEGEKESKILASEGIARQRQN 211 (301)
T ss_pred HHHHHHHHHHHHHHHHH--HH------HhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHH
Confidence 99999862 33444332 32 25788888999999999998877766665555544
No 16
>KOG3090|consensus
Probab=99.96 E-value=2.5e-27 Score=200.10 Aligned_cols=215 Identities=17% Similarity=0.209 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhhceEEecCCeEEEEEe-CCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEE
Q psy9118 56 VSLFSLLLVFNYSFHKIEEGHVGVYFR-GGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDR 134 (293)
Q Consensus 56 ~~lv~~l~~l~~~~~~V~~ge~gVv~~-~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~ 134 (293)
+++.+.+..+..|+|.|+-|+++|+++ +|++...+++.|+||.+||+++.+.||+|-+...+. .+..|+|-++|+++.
T Consensus 25 ~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~-S~tGskDLQmVnI~l 103 (290)
T KOG3090|consen 25 LIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLIS-SPTGSKDLQMVNIGL 103 (290)
T ss_pred HHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCccccc-CCCCCcceeEEEeee
Confidence 344556677788999999999999997 899988899999999999999999999998877665 356899999999864
Q ss_pred EEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q psy9118 135 IEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAV 214 (293)
Q Consensus 135 ~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v 214 (293)
- ++.+.++...+.+|+.+|.+|++..|-+++.+.|+.++++|+..+++ +.|+.++..|++.|.++.. +..|.++||
T Consensus 104 R-VLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLI-TQRe~VSrliRk~L~eRA~--~Fni~LDDV 179 (290)
T KOG3090|consen 104 R-VLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLI-TQREQVSRLIRKILTERAA--DFNIALDDV 179 (290)
T ss_pred E-EecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHh--ccceEeecc
Confidence 4 45667889999999999999999999999999999999999999999 7999999999999999999 779999999
Q ss_pred EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9118 215 RVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKV 279 (293)
Q Consensus 215 ~I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~ 279 (293)
.|+.++|.+++..|++.++-++|.+ |.......+|+.+++..|++|+|||+++++..++..
T Consensus 180 SiT~l~F~~efTaAiEaKQvA~QeA----qRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~ 240 (290)
T KOG3090|consen 180 SITELTFGKEFTAAIEAKQVAAQEA----QRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIK 240 (290)
T ss_pred eeeeeecCHHHHHHHHHHHHHHHHH----hhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHh
Confidence 9999999999999998877665543 233334458999999999999999999999988643
No 17
>KOG2621|consensus
Probab=99.96 E-value=3.8e-28 Score=211.83 Aligned_cols=191 Identities=20% Similarity=0.281 Sum_probs=161.9
Q ss_pred HHHHHhhceEEecCCeEEEEEeCCcccc-ccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEE
Q psy9118 61 LLLVFNYSFHKIEEGHVGVYFRGGALLS-TISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN 139 (293)
Q Consensus 61 ~l~~l~~~~~~V~~ge~gVv~~~Gk~~~-~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~ 139 (293)
..+-++.|+.+|+++|++|++|+|++.. ...|||+.|.+|++++..++|+|+++++++++.++|+|...+.+|++++++
T Consensus 47 fP~S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyr 126 (288)
T KOG2621|consen 47 FPISIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYR 126 (288)
T ss_pred hHHHHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEE
Confidence 3467778999999999999999999873 367999999999999999999999999999999999999999999998777
Q ss_pred EechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118 140 VLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP 219 (293)
Q Consensus 140 ~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i 219 (293)
+.||.-...- .++.....+-.++..||+++|+.++.|++ ++|+.++.++...|.+... .|||+|++|.|+|+
T Consensus 127 i~dpi~sv~~-----V~Da~~sTr~lAqttLrn~lgtk~L~eil-s~r~~is~~~~~~Ld~~T~--~WGvkVeRVEikDv 198 (288)
T KOG2621|consen 127 ISDPIIAVNN-----VGDADNATRLLAQTTLRNYLGTKTLSEIL-SSREVIAQEAQKALDEATE--PWGVKVERVEIKDV 198 (288)
T ss_pred ecCHHHHHHh-----ccCHHHHHHHHHHHHHHHHHccCcHHHHH-HhHHHHHHHHHHHhhhccc--ccceEEEEEEEeee
Confidence 7777654322 22234567788899999999999999999 6999999999999999988 99999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118 220 KIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQ 277 (293)
Q Consensus 220 ~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~ 277 (293)
.+|.+...++. . |++|.+++.+.++.|+||..|.+-.+++
T Consensus 199 rlp~qlqrama------------a------eAeA~reA~Akviaaege~~as~al~~a 238 (288)
T KOG2621|consen 199 RLPAQLQRAMA------------A------EAEATREARAKVIAAEGEKKASEALKEA 238 (288)
T ss_pred echHhhhhhhh------------c------hhhhhhhhhhhHHHHHhhhHHHHHHHHh
Confidence 99999888762 1 2456666677778888888776655554
No 18
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.95 E-value=1.9e-27 Score=200.75 Aligned_cols=158 Identities=25% Similarity=0.379 Sum_probs=101.3
Q ss_pred EEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCC--cccccCCCCeEEEEEEEEEEEechhcHH
Q psy9118 70 HKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKN--VPCGTSGGVMIYFDRIEVVNVLSVSSVY 147 (293)
Q Consensus 70 ~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~--~~v~T~D~~~v~vd~~~v~~~~d~~~i~ 147 (293)
++|+||++||++++|++. .+++||+||.+||++++..+|++.+++++.. ..+.|+|+.++.++..+.|++.++..+.
T Consensus 1 ~~V~~g~~~V~~~~G~~~-~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~ 79 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVK-DVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFV 79 (179)
T ss_dssp --------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCC
T ss_pred CEeCCCEEEEEEECCeEe-EEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHH
Confidence 589999999999999998 5899999999999999999999999999886 7999999999999988777665555543
Q ss_pred HHHHhh--cccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHH
Q psy9118 148 DIVKNY--TADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETI 225 (293)
Q Consensus 148 ~~~~~~--~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v 225 (293)
. .| +.......|++.+++++|++++++++++++ ++|.++.+.+++.+++.+. ++||+|.+|.|.++++|+++
T Consensus 80 ~---~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~-~~r~~~~~~v~~~l~~~~~--~~Gi~i~~v~i~~~~~~~~~ 153 (179)
T PF01145_consen 80 Q---NYEGGEEDPENLLRQIVESALREVISSYSLEEIY-SNREEIADEVREQLQEALE--EYGIEITSVQITDIDPPQEV 153 (179)
T ss_dssp C---CCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHH-HTHHHHHHHHHHHHHHHHG--GGTEEEEEEEEEEEEECTTH
T ss_pred H---hhhcchhhhhhhhhhhhhhhhheEeeeeehHHhh-hhhhhhhHhHHHHHhhhcc--ccEEEEEEEEEeecCCCHHH
Confidence 3 33 223457899999999999999999999999 5799999999999999999 78999999999999999999
Q ss_pred HHHHHHHHH
Q psy9118 226 RKNYELMEA 234 (293)
Q Consensus 226 ~~a~~~~~a 234 (293)
.++++....
T Consensus 154 ~~~i~~~~~ 162 (179)
T PF01145_consen 154 EEAIEEKQR 162 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999865444
No 19
>KOG3083|consensus
Probab=99.91 E-value=8.6e-24 Score=178.57 Aligned_cols=212 Identities=18% Similarity=0.218 Sum_probs=183.2
Q ss_pred HHHHHHHHHhhceEEecCCeEEEEEe-CCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEE
Q psy9118 57 SLFSLLLVFNYSFHKIEEGHVGVYFR-GGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRI 135 (293)
Q Consensus 57 ~lv~~l~~l~~~~~~V~~ge~gVv~~-~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~ 135 (293)
.+.++..++-++.|.|+-|+++|++. |-++.+.+.+.|-||.+||.++.+.||+|.+..+++. ...|+|-++|++..-
T Consensus 15 ~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~-itGskdLQ~VniTlr 93 (271)
T KOG3083|consen 15 ALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPV-ITGSKDLQNVNITLR 93 (271)
T ss_pred hhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCccccc-ccCchhhhcccceEE
Confidence 34455668889999999999999997 8888878999999999999999999999887666642 347889888887644
Q ss_pred EEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEE
Q psy9118 136 EVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVR 215 (293)
Q Consensus 136 ~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~ 215 (293)
++....+.+.+.++.+.|.+|++..|-++..+.|++++++++..+++ +.|+-++..+.+.+.+... ..||.+++|.
T Consensus 94 -il~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eli-TqRe~vS~~v~~~lt~rA~--~Fgl~Lddvs 169 (271)
T KOG3083|consen 94 -ILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELI-TQRELVSRQVSNDLTERAA--TFGLILDDVS 169 (271)
T ss_pred -EEecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchh-hhhHHHHHHHHHHHHHHHH--hhCeeechhh
Confidence 44555678999999999999999999999999999999999999999 7999999999999999999 7899999999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118 216 VTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQ 277 (293)
Q Consensus 216 I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~ 277 (293)
|+.++|-.++.+|.+.++-+||..++| .....+||.++++.+|.|||+++|+++.+..
T Consensus 170 iThltfGkEFt~AvE~KQVAQQEAEra----rFvVeKAeQqk~aavIsAEGds~aA~li~~s 227 (271)
T KOG3083|consen 170 ITHLTFGKEFTEAVEAKQVAQQEAERA----RFVVEKAEQQKKAAVISAEGDSKAAELIANS 227 (271)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhheeecccchHHHHHHHHH
Confidence 999999999999998888777654332 2344589999999999999999999998753
No 20
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.82 E-value=2.2e-19 Score=155.70 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=130.7
Q ss_pred HHhhceEEecCCeEEEEEeCCccccccccCceEEEc----CCc---------------CeEEEEEeEEEEEecC--C---
Q psy9118 64 VFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMI----PFI---------------TTFRHVQVTLQTDEVK--N--- 119 (293)
Q Consensus 64 ~l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~----P~i---------------~~v~~v~~r~q~~~~~--~--- 119 (293)
+.++|.++|++|+.||++++|++. .+++||.|+.+ |++ ..|+.++++.+..... +
T Consensus 11 i~~~s~~iV~e~~~av~~~~Gk~~-~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 89 (207)
T cd03408 11 IKNGSQLIVREGQAAVFVNEGKVA-DVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV 89 (207)
T ss_pred cccCCEEEEcCCcEEEEEECCEEE-EEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence 456799999999999999999998 56677666544 543 3478899988776431 1
Q ss_pred -cccccCCCCeEEEEEEEEEEEechhcHHHHHHh----hcccccchhHHHHHHHHHHHHhhcCcHHHHHhhh-HHHHHHH
Q psy9118 120 -VPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKN----YTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL-FDQIDEN 193 (293)
Q Consensus 120 -~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~----~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~-R~~i~~~ 193 (293)
....|.|++++.+++.+.|++.||.+++.-+.. |..+.....|++.+++++|+++|++++++++... |+++++.
T Consensus 90 ~~~~~~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~ 169 (207)
T cd03408 90 FGRDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKA 169 (207)
T ss_pred eeeCCccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHH
Confidence 123677889999998877888899877543321 1111236789999999999999999999999544 9999999
Q ss_pred HHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHH
Q psy9118 194 LKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230 (293)
Q Consensus 194 i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~ 230 (293)
+.+.+.+.++ .+||+|.+|.|+++++|+++.+++.
T Consensus 170 v~~~l~~~~~--~~Gi~i~~v~I~~i~~p~e~~~ai~ 204 (207)
T cd03408 170 VREALAPWFA--SFGLELVSVYIESISYPDEVQKLID 204 (207)
T ss_pred HHHHHHHHHH--hcCcEEEEEEEEeecCCHHHHHHHH
Confidence 9999999999 7899999999999999999998875
No 21
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=5.1e-17 Score=155.56 Aligned_cols=159 Identities=12% Similarity=0.144 Sum_probs=125.8
Q ss_pred ceEEecCCeEEEEEeC---------CccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEE
Q psy9118 68 SFHKIEEGHVGVYFRG---------GALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVV 138 (293)
Q Consensus 68 ~~~~V~~ge~gVv~~~---------Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~ 138 (293)
.+|++.+...+++..+ |.- ..++.+|+||.+|++++..++++++..+++....+.|+||.+++++.+.++
T Consensus 33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~-~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v 111 (548)
T COG2268 33 RFYIIARPNEALIRTGSKLGSKDEAGGG-QKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYV 111 (548)
T ss_pred eeEEecCCCceEEEeccccCCcccccCC-ccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEE
Confidence 6666555555555554 332 257889999999999999999999999888767899999999998766544
Q ss_pred EEec-hhcHHHHHHhhccc----ccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q psy9118 139 NVLS-VSSVYDIVKNYTAD----YDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQA 213 (293)
Q Consensus 139 ~~~d-~~~i~~~~~~~~~~----~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~ 213 (293)
.+-+ ..-+......++.. .....+...++++||.+++++|+.+++ ++|..|++.+.+.+..+|+ ..|+.|++
T Consensus 112 ~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~-edR~~F~~~V~~~v~~dL~--k~Gl~l~s 188 (548)
T COG2268 112 KIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELN-EDRLGFAQVVQEVVGDDLS--KMGLVLDS 188 (548)
T ss_pred EecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHh-hHHhhHHHHHHHHHHHHHH--hcCeeeee
Confidence 4422 23333334445433 226778999999999999999999999 7999999999999999999 66999999
Q ss_pred EEecCCCCC-------hHHHHHHH
Q psy9118 214 VRVTKPKIP-------ETIRKNYE 230 (293)
Q Consensus 214 v~I~~i~~p-------~~v~~a~~ 230 (293)
+.|.++..+ ..|.++..
T Consensus 189 ~~I~~i~d~~~~~~d~~~yLda~G 212 (548)
T COG2268 189 LAINDINDTSKENQDPNNYLDALG 212 (548)
T ss_pred eeecccccccccccChhhhhhhcC
Confidence 999999999 88998843
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.77 E-value=6.7e-18 Score=134.98 Aligned_cols=120 Identities=16% Similarity=0.243 Sum_probs=106.2
Q ss_pred EEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhH
Q psy9118 108 VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 187 (293)
Q Consensus 108 v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R 187 (293)
+|+|.++.+. ...++|+||.++.+|.++.|+ +++.++...+..++.++.+..|++.+++++|+++|+|+++++++++|
T Consensus 3 ~~~r~~~~~~-~~~v~T~D~~~v~vd~~v~y~-V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R 80 (124)
T cd03400 3 YSTRLQEVDE-KIDVLSKEGLSINADVSVQYR-INPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKR 80 (124)
T ss_pred ccceeeeccc-ceEEECCCCCEEEEEEEEEEE-EChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhH
Confidence 6788887765 468999999999999885555 47777888887787665677899999999999999999999996689
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH
Q psy9118 188 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231 (293)
Q Consensus 188 ~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~ 231 (293)
++|++.+.+.+++.+. +|||+|.+|.|++++||+++.+|++.
T Consensus 81 ~~i~~~i~~~l~~~~~--~~Gi~v~~v~i~~i~~P~~v~~aI~~ 122 (124)
T cd03400 81 KEIESAIKKELIEEFV--GDGLILEEVLLRNIKLPDQIADAIEA 122 (124)
T ss_pred HHHHHHHHHHHHHHhc--cCCeEEEEEEEecccCCHHHHHHHHh
Confidence 9999999999999999 88999999999999999999999874
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.70 E-value=1.6e-16 Score=127.73 Aligned_cols=119 Identities=15% Similarity=0.185 Sum_probs=105.3
Q ss_pred EEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHH-HHHHhhcc---cccchhHHHHHHHHHHHHhhcCcHHHHH
Q psy9118 108 VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVY-DIVKNYTA---DYDKALIFNKVHHELNQFCSIHNLHEVY 183 (293)
Q Consensus 108 v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~-~~~~~~~~---~~~~~~l~~~~~~~lr~~~~~~tl~eil 183 (293)
+|+|+++++++++.+.|+|++++.+++++.|++.|+.+++ ..+..|+. +.....+.+.+++++|+++|++++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5788999999989999999999999999888888887654 44445532 2347889999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHH
Q psy9118 184 IDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNY 229 (293)
Q Consensus 184 ~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~ 229 (293)
++|++|.+++.+.+++.++ +|||+|.+|.|++|++|++|.+++
T Consensus 82 -~~R~~i~~~i~~~v~~~~~--~~Gi~i~~v~I~~i~~~~~~~~~~ 124 (128)
T cd03399 82 -EDRDKFAEQVQEVVAPDLN--KMGLELDSFTIKDITDTDGYLNNL 124 (128)
T ss_pred -HhHHHHHHHHHHHHHHHHH--HCCCEEEEEeeEEecCCCCCHHHc
Confidence 6999999999999999999 899999999999999999988875
No 24
>KOG2668|consensus
Probab=99.69 E-value=2.4e-15 Score=135.03 Aligned_cols=208 Identities=14% Similarity=0.110 Sum_probs=147.3
Q ss_pred ceEEecCCeEEEEEeCCccccccccCceEEEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEe--chh-
Q psy9118 68 SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVL--SVS- 144 (293)
Q Consensus 68 ~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~--d~~- 144 (293)
+|++..+++.-++..+|.-. ..+-+| .|.+|| +++..+|+.+.++++....+.|+.|+++.+.++....+. |+.
T Consensus 1 ~f~~~~~~~~l~itg~g~~~-~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 1 MFKVAGASQYLAITGGGIED-IKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CCccCCccceEEeecccccC-ceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 35667788888888887643 334444 356677 999999999999999887899999999999887666642 222
Q ss_pred -cHHHHHHhhcccc--cchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCC
Q psy9118 145 -SVYDIVKNYTADY--DKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKI 221 (293)
Q Consensus 145 -~i~~~~~~~~~~~--~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~ 221 (293)
..+-...++|... -+.++..++++.+|.+.|++|++++| .+|.+|...+.+..+.+|. ..||.|.+++|+|+..
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIy-Kdrk~F~k~Vfeva~~dl~--~mGi~I~s~tiKdl~D 154 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIY-KDRKEFKKEVFEVAQLDLG--QMGIVIYSATIKDLVD 154 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHH-hhHHHHHHHHHHHhhhhhh--hcceEEEEeEhhhhhc
Confidence 2233334555432 26788999999999999999999999 8999999999999999999 6699999999999988
Q ss_pred Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHhHHHHHHH
Q psy9118 222 PE--TIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKE--AQIAKIQYEQKVMEQESKQRV 288 (293)
Q Consensus 222 p~--~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~ge--aea~~i~~~~~~~e~~~~~~~ 288 (293)
.+ +|..++...+... -.+......|||.+++-|-+|.|. ..++++.++.++....+.+.+
T Consensus 155 ~~g~~YlssLGka~tae-------v~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el 218 (428)
T KOG2668|consen 155 VPGHEYLSSLGKATTAE-------VARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKEL 218 (428)
T ss_pred ccchHHHHHhhhHHHHH-------HHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHH
Confidence 88 6888865432211 001111134555556555555554 334555555555554444433
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.47 E-value=1.7e-12 Score=101.74 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=95.7
Q ss_pred eEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHH
Q psy9118 110 VTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQ 189 (293)
Q Consensus 110 ~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~ 189 (293)
.+..+.+.+...+.|+||.++.++.++.|++.++..+ .+.+.+..+ ...|.+.+.+++|+++++++++++. ++|.+
T Consensus 4 ~~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~~--~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-~~r~~ 79 (121)
T cd02106 4 LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKA--LYNVRDPED-EEALRQLAQSALRSVIGKMTLDELL-EDRDE 79 (121)
T ss_pred ceeEEecCCCceEEecCCCEEEEEEEEEEEEeCHHHH--HHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHH-hhHHH
Confidence 3445556666789999999999998877777666612 222222222 5789999999999999999999998 79999
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH
Q psy9118 190 IDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231 (293)
Q Consensus 190 i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~ 231 (293)
+++.+++.+...++ .+|++|.+|.|.++++|+++.+++++
T Consensus 80 i~~~v~~~l~~~~~--~~Gi~i~~v~i~~i~~~~~~~~ai~~ 119 (121)
T cd02106 80 IAAEVREALQEDLD--KYGIEVVDVRIKDIDPPEEVQEAMED 119 (121)
T ss_pred HHHHHHHHHHHHHH--hcCCEEEEEEEEecCCCHHHHHHHHh
Confidence 99999999999999 88999999999999999999999864
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.26 E-value=7.1e-10 Score=96.46 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=116.4
Q ss_pred hhceEEecCCeEEEEEeCCccccccccCceEEE-------------------cCCcCeEEEEEeEEEE-EecC-Cccc--
Q psy9118 66 NYSFHKIEEGHVGVYFRGGALLSTISGPGFHAM-------------------IPFITTFRHVQVTLQT-DEVK-NVPC-- 122 (293)
Q Consensus 66 ~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh~~-------------------~P~i~~v~~v~~r~q~-~~~~-~~~v-- 122 (293)
.+|-.+|++||.||+++-|++. .+++||.|-. .||-..|+.++++... +.+. +.++
T Consensus 13 ~GS~LiV~egQ~Avfv~~G~i~-d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~ 91 (211)
T PF13421_consen 13 NGSQLIVREGQCAVFVNDGKIA-DVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPY 91 (211)
T ss_pred CCCEEEECCCCEEEEEECCEEE-EEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeee
Confidence 5678899999999999999998 5999999943 3555678888887653 2221 1122
Q ss_pred ccCCCCeEEEE--EEEEEEEechhcHHHHHHhhcccc----cchhHHHHHHHHHHHHhhc--CcHHHHHhhhHHHHHHHH
Q psy9118 123 GTSGGVMIYFD--RIEVVNVLSVSSVYDIVKNYTADY----DKALIFNKVHHELNQFCSI--HNLHEVYIDLFDQIDENL 194 (293)
Q Consensus 123 ~T~D~~~v~vd--~~~v~~~~d~~~i~~~~~~~~~~~----~~~~l~~~~~~~lr~~~~~--~tl~eil~~~R~~i~~~i 194 (293)
...+-..|.+. +..-+++.||..+..-+..-...+ ...++++.+..++.+.+++ +++.++- .+-.+|++.+
T Consensus 92 ~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~-a~~~eis~~~ 170 (211)
T PF13421_consen 92 RDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIP-AHLDEISEAL 170 (211)
T ss_pred cCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHH
Confidence 22222233333 333345678877754322111111 2567888888888888885 6888888 6889999999
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH
Q psy9118 195 KTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231 (293)
Q Consensus 195 ~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~ 231 (293)
++.+++.++ .+||+|+++.|.+|++|++..+++++
T Consensus 171 ~~~l~~~~~--~~Gi~l~~f~I~~i~~pee~~~~i~~ 205 (211)
T PF13421_consen 171 KEKLNPEFE--RYGIELVDFGIESISFPEEVQKAIDK 205 (211)
T ss_pred HHHHHHHHH--hcCcEEEEEEEEeecCCHHHHHHHHH
Confidence 999999998 78999999999999999999998864
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.66 E-value=1.1e-06 Score=77.87 Aligned_cols=164 Identities=10% Similarity=0.122 Sum_probs=114.9
Q ss_pred HhhceEEecCCeEEEEEeCCccccccccCceE-------------------EEcCCcCeEEEEEeEEEE-EecC-Ccccc
Q psy9118 65 FNYSFHKIEEGHVGVYFRGGALLSTISGPGFH-------------------AMIPFITTFRHVQVTLQT-DEVK-NVPCG 123 (293)
Q Consensus 65 l~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh-------------------~~~P~i~~v~~v~~r~q~-~~~~-~~~v~ 123 (293)
--.|...|.|++-++.+.-|++.+..-++|.+ |..|+-+.|+.++++.+. +.+. ++++.
T Consensus 37 ~nGs~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin 116 (345)
T COG4260 37 QNGSILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPIN 116 (345)
T ss_pred ccCcEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCee
Confidence 35678899999999999999998655568875 224556788888887665 4332 22222
Q ss_pred cCC---C--CeEEEEEEEEEEEechhcHHHHHHhhcccc----cchhHHHHHHHHHHHHhhcCcH--HHHHhhhHHHHHH
Q psy9118 124 TSG---G--VMIYFDRIEVVNVLSVSSVYDIVKNYTADY----DKALIFNKVHHELNQFCSIHNL--HEVYIDLFDQIDE 192 (293)
Q Consensus 124 T~D---~--~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~----~~~~l~~~~~~~lr~~~~~~tl--~eil~~~R~~i~~ 192 (293)
--| . ..+....+.-+.+.||-.+++.+..-.+.| -++.+-+.+..+|...++++-. ..+ ..+.-+|+.
T Consensus 117 ~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~l-tan~~elsk 195 (345)
T COG4260 117 YFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFL-TANQMELSK 195 (345)
T ss_pred cccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhh-hhhHHHHHH
Confidence 222 2 233333332344567776655443322223 2667788888999998888743 333 357789999
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHH
Q psy9118 193 NLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 231 (293)
Q Consensus 193 ~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~ 231 (293)
.+.+.|.+++. .+|..|++|.|-+|++|++.++.+++
T Consensus 196 ~m~e~Ld~q~~--q~Gm~v~sfqvaSisypde~Q~lin~ 232 (345)
T COG4260 196 YMAEVLDEQWT--QYGMAVDSFQVASISYPDESQALINM 232 (345)
T ss_pred HHHHHHhHHHH--hhCceEeeEEEEEecCcHHHHHHHHh
Confidence 99999999999 66999999999999999999998763
No 28
>PTZ00491 major vault protein; Provisional
Probab=97.99 E-value=0.0011 Score=67.31 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=93.3
Q ss_pred EEecCCeEEEEEeC--CccccccccCceEEEcCCcCeEEEEEeE---------EEEEec--------CCcccccCCCCeE
Q psy9118 70 HKIEEGHVGVYFRG--GALLSTISGPGFHAMIPFITTFRHVQVT---------LQTDEV--------KNVPCGTSGGVMI 130 (293)
Q Consensus 70 ~~V~~ge~gVv~~~--Gk~~~~v~~pGlh~~~P~i~~v~~v~~r---------~q~~~~--------~~~~v~T~D~~~v 130 (293)
|.||-+...=++.+ ++- +.++||-+.+.-|- +.+..++++ +..+-+ +...+-|+|...+
T Consensus 465 ~~vphn~avqvydyk~~~~-Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL 542 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKS-RVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARL 542 (850)
T ss_pred EEcCCCcEEEEEEcccCce-EEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceE
Confidence 45665555555553 333 36789999888886 555555542 111111 1235789999988
Q ss_pred EEEEEEEEEEe-chhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHH------hh
Q psy9118 131 YFDRIEVVNVL-SVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRE------LN 203 (293)
Q Consensus 131 ~vd~~~v~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~------l~ 203 (293)
.+.....|++- ++..-.+..+-|...+.-..+-..+.+.+|..+++.+.+++..+.-.-|.+.|.....+. +.
T Consensus 543 ~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~ 622 (850)
T PTZ00491 543 ALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLR 622 (850)
T ss_pred EEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceE
Confidence 88766556552 333232333334433333346677888999999999999998432333444444311111 11
Q ss_pred cCCCCeEEEEEEecCCCCChHH-HHHHH
Q psy9118 204 EMAPGLFIQAVRVTKPKIPETI-RKNYE 230 (293)
Q Consensus 204 ~~~~GI~I~~v~I~~i~~p~~v-~~a~~ 230 (293)
=-..|+-|++|.|+++.+-++- +++++
T Consensus 623 F~~N~lvit~VDvqsvEpvD~~tr~~Lq 650 (850)
T PTZ00491 623 FPANNLVITNVDVQSVEPVDERTRDSLQ 650 (850)
T ss_pred EccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence 0146899999999999987653 33443
No 29
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=95.62 E-value=0.33 Score=43.53 Aligned_cols=108 Identities=12% Similarity=0.156 Sum_probs=73.6
Q ss_pred EecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHH
Q psy9118 115 DEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENL 194 (293)
Q Consensus 115 ~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i 194 (293)
++-|......+||..+.+.+ +++....+. +..|...+++.+-.+-++.+..+-+.-+-.+++ ++-+.|+..+
T Consensus 127 I~~P~i~aVAkdGIql~~kA----rVTVRaNi~---rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VL-EnPd~ISk~V 198 (316)
T PF12127_consen 127 IDTPTIAAVAKDGIQLKVKA----RVTVRANID---RLVGGAGEETIIARVGEGIVTTIGSAESHKEVL-ENPDSISKTV 198 (316)
T ss_pred ecCcchhhhhcCCeEEEEEE----EEEEEecHH---HhccCCCcHHHHHHHccceeeeeccchhHHHHh-cCHHHHHHHH
Confidence 33444556789998887643 333333333 235655567778778788877777777889999 7888888776
Q ss_pred HHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHHHHH
Q psy9118 195 KTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEA 234 (293)
Q Consensus 195 ~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~a 234 (293)
. .+-|+. +.-++|.++.|-|++.-+.+-..++.-|+
T Consensus 199 L---~kgLDa-gTAFeIlSIDIaDidVG~NIGA~Lq~dQA 234 (316)
T PF12127_consen 199 L---EKGLDA-GTAFEILSIDIADIDVGENIGAKLQTDQA 234 (316)
T ss_pred H---hhCCCc-CceeEEEEeeeeccccchhhchhhhHHHH
Confidence 5 445654 56799999999999988766555443333
No 30
>PRK13665 hypothetical protein; Provisional
Probab=95.57 E-value=0.12 Score=46.12 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=72.9
Q ss_pred EEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHH
Q psy9118 114 TDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDEN 193 (293)
Q Consensus 114 ~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~ 193 (293)
.++-|......+||..+.+.+ +++....+.. ..|...+++.+-.+-++.+..+-+.-+-.+++ ++-+.|+..
T Consensus 131 VI~~P~i~aVAkdGIql~~kA----RVTVRaNi~r---LVGGAgEeTIiARVGEgIVttIGSa~~hk~VL-EnPd~ISk~ 202 (316)
T PRK13665 131 VIETPFIAAVAKDGIEVKAKA----RVTVRANIDR---LVGGAGEETIIARVGEGIVSTIGSSESHKEVL-ENPDSISKT 202 (316)
T ss_pred eecCCcchhhcccCeEEEEEE----EEEeehhHHH---HhCCCcceeeEeeecCceeecccCcchHHHHh-cCHHHHHHH
Confidence 344455566789998887643 3333334433 34554556666666677777777777888999 788888855
Q ss_pred HHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHHHHH
Q psy9118 194 LKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEA 234 (293)
Q Consensus 194 i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~a 234 (293)
+ +.+-|+. +.-++|.++.|-|++.-+.+-.-++.-|+
T Consensus 203 V---L~kGLDa-gTAFeIlSIDIADvdVG~NIGA~Lq~dQA 239 (316)
T PRK13665 203 V---LSKGLDA-GTAFEILSIDIADVDVGKNIGAKLQTDQA 239 (316)
T ss_pred H---HhccCCc-CceeEEEEEeeeccccchhhchhhhHHHH
Confidence 4 4566764 56799999999999988776655543333
No 31
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=94.78 E-value=0.44 Score=41.96 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=73.6
Q ss_pred cCCcCeEEEEEeEEEEEecCCcccccCCCCe-EEEEEE-EEEEEechhcHHHHHHhhcccccchhH-HHHHHHHHHHHhh
Q psy9118 99 IPFITTFRHVQVTLQTDEVKNVPCGTSGGVM-IYFDRI-EVVNVLSVSSVYDIVKNYTADYDKALI-FNKVHHELNQFCS 175 (293)
Q Consensus 99 ~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~-v~vd~~-~v~~~~d~~~i~~~~~~~~~~~~~~~l-~~~~~~~lr~~~~ 175 (293)
-|.++-+.++-.++..++..... .+.+..+ ++-|.. +.+.....|++.++..+|..-...... ...+...+++.
T Consensus 24 ~pG~~~~~P~i~~v~~v~~r~~~-~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~~~i~~~~~~~-- 100 (242)
T cd03405 24 EPGLHFKLPFIQQVKKFDKRILT-LDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQAVGGEERAAETRLDQIVNSA-- 100 (242)
T ss_pred CCCeeEEcCCcceEEEEcCEEEe-ccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHHHhcChHHHHHHHHHHHHHHH--
Confidence 46555444444445555543222 1212222 233332 223334567777776665432222211 12333333332
Q ss_pred cCcHHHHHhh-hHHHH----HHHHHHHHHHHhhcCCCCeEEEEEEecCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9118 176 IHNLHEVYID-LFDQI----DENLKTALQRELNEMAPGLFIQAVRVTKPKIPE-TIRKNYELMEAEKTKLLISIQHQKVV 249 (293)
Q Consensus 176 ~~tl~eil~~-~R~~i----~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~-~v~~a~~~~~ae~~~~~~A~q~~~~~ 249 (293)
+.++++. .-+++ ...+.+.+.+.+.+ -+.=..+.|.++.+.+ .+-+.+.+...++. .|++.+...
T Consensus 101 ---lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~---~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~---~ae~~~~a~ 171 (242)
T cd03405 101 ---LRAEFGKRTLIELVSGERGELMEEIRRAVAE---EAKELGIEVVDVRIKRIDLPEEVSESVYRRM---RAERERIAA 171 (242)
T ss_pred ---HHHHHccCCHHHHHHhHHHHHHHHHHHHHHH---HHHccCcEEEEEEEEeccCCHHHHHHHHHHH---HHHHHHHHH
Confidence 3344421 12233 23455566666652 2333578888888643 22334543222222 244433333
Q ss_pred HHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9118 250 EKDAE-----------TERKRAVIEAEKEAQIAKIQYEQK 278 (293)
Q Consensus 250 e~~Ae-----------A~~~~~ii~A~geaea~~i~~~~~ 278 (293)
+.+|+ |++++.++.|+|+|++..++++.+
T Consensus 172 ~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~ge 211 (242)
T cd03405 172 EFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGD 211 (242)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444 444444555555555555555433
No 32
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=94.50 E-value=1.7 Score=40.53 Aligned_cols=64 Identities=6% Similarity=0.094 Sum_probs=37.6
Q ss_pred EEEecCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9118 213 AVRVTKPKIPE-TIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKV 279 (293)
Q Consensus 213 ~v~I~~i~~p~-~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~~~ 279 (293)
.+.|.++.+-+ .+-..+.+-.. +..+|++.+.....+||+++++..++|+|++++.++.+++..
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~---~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~ 266 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIY---NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAER 266 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46666666544 22233332111 122355555555567888888888888888888888777543
No 33
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=93.27 E-value=2.4 Score=35.40 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118 163 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP 219 (293)
Q Consensus 163 ~~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i 219 (293)
.+.+++.+-..+++.+.+++.+ +.+..+.+++.+.++..|.+ | .|.+|.++++
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~---~-~V~~VlFt~F 163 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAP---A-QVNAVLFKEV 163 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCC---C-ceeEEEEEee
Confidence 3556777788889999999985 46899999999999998873 3 3788877764
No 34
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=92.95 E-value=0.73 Score=41.28 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9118 248 VVEKDAETERKRAVIEAEKEAQIAKIQYEQK 278 (293)
Q Consensus 248 ~~e~~AeA~~~~~ii~A~geaea~~i~~~~~ 278 (293)
....+|+|++++.+++|+|++++.++.+++-
T Consensus 216 ~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~ 246 (266)
T cd03404 216 RIIQEAEAYKEEVIAEAQGEAARFESLLAEY 246 (266)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445777777777777777777777665543
No 35
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=92.66 E-value=4.3 Score=37.55 Aligned_cols=36 Identities=25% Similarity=0.187 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9118 242 SIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQ 277 (293)
Q Consensus 242 A~q~~~~~e~~AeA~~~~~ii~A~geaea~~i~~~~ 277 (293)
|++.+.....++++++++..+.|++++++.++.+++
T Consensus 219 aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA 254 (317)
T TIGR01932 219 SEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEA 254 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344456666666666666666666666654
No 36
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=92.49 E-value=3.9 Score=33.25 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118 164 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP 219 (293)
Q Consensus 164 ~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i 219 (293)
+.+++.+-..+++.+.+++-+ +.++.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~---g-~V~~Vyft~f 139 (142)
T PRK07718 87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE---G-KVEKVYITSF 139 (142)
T ss_pred hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc---C-ceEEEEEEee
Confidence 456778888899999999985 46899999999999998873 4 5778877664
No 37
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=92.42 E-value=0.8 Score=41.08 Aligned_cols=31 Identities=3% Similarity=-0.133 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy9118 246 QKVVEKDAETERKRAVIEAEKEAQIAKIQYE 276 (293)
Q Consensus 246 ~~~~e~~AeA~~~~~ii~A~geaea~~i~~~ 276 (293)
++....+|++++++.++.|+|+++......+
T Consensus 181 a~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~ 211 (262)
T cd03407 181 AEAKRLQGVGAAEQRQAIADGLRESILSLAD 211 (262)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334446677777777777777766655543
No 38
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=92.08 E-value=0.59 Score=38.85 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCC
Q psy9118 163 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPK 220 (293)
Q Consensus 163 ~~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~ 220 (293)
.+.+++++...+++.|.+++-+ ..++++..++++.|+..|. . |-.|.+|..+++.
T Consensus 102 ~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~--~-g~~V~dV~fT~fi 157 (159)
T COG1580 102 KPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILK--E-GQVVKDVLFTNFI 157 (159)
T ss_pred hHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHh--c-CCeeEEEeeehhh
Confidence 4678899999999999999986 6799999999999999998 3 4488999888764
No 39
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=91.64 E-value=6.9 Score=32.46 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118 164 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP 219 (293)
Q Consensus 164 ~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i 219 (293)
+.+++.+-..+++.+.+++.+ +.+..+.+++.+.++..+......-.|.+|.++++
T Consensus 103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 457777888899999999974 46889999999999999873211246778877764
No 40
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=89.81 E-value=1.1 Score=33.63 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118 163 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP 219 (293)
Q Consensus 163 ~~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i 219 (293)
.+.+++++...+++++.+++-+ +.+..+.+++.+.+++.+.+ -.|.+|.++++
T Consensus 43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~----~~V~~V~ft~f 96 (99)
T PF03748_consen 43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK----GKVKDVYFTDF 96 (99)
T ss_pred cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc----CcEEEEEEEEE
Confidence 3567888888999999999986 67899999999999999973 23777777654
No 41
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=88.68 E-value=3.3 Score=36.96 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEEecCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy9118 192 ENLKTALQRELNEMAPGLFIQAVRVTKPKIPET-IRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI 270 (293)
Q Consensus 192 ~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~-v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea 270 (293)
+.|.+.+.+.+++. ..-.=..+.|.++.+-.- +-+.+... =++...|++.+.....+|+++++..+.+|+|+|+.
T Consensus 114 ~~i~~~i~~~l~~~-~~~~~~GI~V~~v~I~~i~~p~~v~~a---~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~ 189 (261)
T TIGR01933 114 SQIREDTKERLNEI-IDNYDLGITVTDVNFQSARPPEEVKEA---FDDVIIAREDEERYINEAEAYANEVVPKARGDAQR 189 (261)
T ss_pred HHHHHHHHHHHHHH-HhhhcCCcEEEEEEEEecCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666631 111112577788776552 22233222 12222244444443444555555544445554444
Q ss_pred HHHHHH
Q psy9118 271 AKIQYE 276 (293)
Q Consensus 271 ~~i~~~ 276 (293)
..+.++
T Consensus 190 ~~~~Ae 195 (261)
T TIGR01933 190 IIEEAR 195 (261)
T ss_pred HHHHHH
Confidence 444443
No 42
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=87.43 E-value=3.8 Score=39.52 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy9118 192 ENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIA 271 (293)
Q Consensus 192 ~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea~ 271 (293)
+.|...+.+.+.+.--.. =..+.|.++.+-+--.- +.++.+=++...|++.++....+||++++..+.+|+|+|+..
T Consensus 210 ~~I~~~i~~~l~e~l~~y-~~GI~V~~V~I~di~pP--~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~i 286 (419)
T PRK10930 210 TVIRSDTQRELEETIRPY-DMGITLLDVNFQAARPP--EEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRI 286 (419)
T ss_pred HHHHHHHHHHHHHHHhhc-CCCeEEEEEEEeecCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777310111 13578888875442211 223333444444666666555677777777666666666554
Q ss_pred HHHH
Q psy9118 272 KIQY 275 (293)
Q Consensus 272 ~i~~ 275 (293)
...+
T Consensus 287 i~~A 290 (419)
T PRK10930 287 LEEA 290 (419)
T ss_pred HHHH
Confidence 4433
No 43
>PTZ00491 major vault protein; Provisional
Probab=85.83 E-value=3.9 Score=42.37 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy9118 251 KDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQR 287 (293)
Q Consensus 251 ~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~~~~ 287 (293)
++|+|.+++..|+++++-+++++.+++...+.+++..
T Consensus 719 a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~~ael~ 755 (850)
T PTZ00491 719 AEALAEAEARLIEAEAEVEQAELRAKALRIEAEAELE 755 (850)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhhHHHHH
Confidence 4666666777788888877777777766665555443
No 44
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.76 E-value=11 Score=32.86 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=59.1
Q ss_pred ccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHh
Q psy9118 123 GTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQREL 202 (293)
Q Consensus 123 ~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l 202 (293)
...||..+..- -++.....+.++ .|...++..+...-++.+..+-++..-.+++ ++-+.+++.+. .+-|
T Consensus 139 vam~gievkak----aritvrani~rl---vggageetviarvgegivstigss~~h~~vl-enpd~isktvl---~kgl 207 (328)
T COG4864 139 VAMNGIEVKAK----ARITVRANIERL---VGGAGEETVIARVGEGIVSTIGSSDEHTKVL-ENPDSISKTVL---EKGL 207 (328)
T ss_pred eeccceEEEEE----EEEEehhhHHHH---hCCCCchhhhhhhccceeeccCCCcchhhHh-cCccHHHHHHH---HccC
Confidence 34577666542 244444444443 3444456666666666655555566677888 67777776654 3455
Q ss_pred hcCCCCeEEEEEEecCCCCChHHHHH
Q psy9118 203 NEMAPGLFIQAVRVTKPKIPETIRKN 228 (293)
Q Consensus 203 ~~~~~GI~I~~v~I~~i~~p~~v~~a 228 (293)
++ +..++|.++.|-+++....+-.-
T Consensus 208 d~-gtafeilsidiadvdigkniga~ 232 (328)
T COG4864 208 DS-GTAFEILSIDIADVDIGKNIGAK 232 (328)
T ss_pred CC-CceeEEEEeeeeccccccccccc
Confidence 53 56699999999999988766544
No 45
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=79.91 E-value=13 Score=29.11 Aligned_cols=101 Identities=10% Similarity=0.004 Sum_probs=58.9
Q ss_pred ccccCCCCeEEEEEEEEEEE-echhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHH----
Q psy9118 121 PCGTSGGVMIYFDRIEVVNV-LSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLK---- 195 (293)
Q Consensus 121 ~v~T~D~~~v~vd~~~v~~~-~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~---- 195 (293)
.+-|+|.-.+.+...-.|+. +|+....+..+-|.....-..+-..+.+.+|..+++.+.++.....-.-|.+.|.
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 56788988887765544554 3555555556656543333345677788899999999999999422222333222
Q ss_pred -HHHHHHhhcCCCCeEEEEEEecCCCC
Q psy9118 196 -TALQRELNEMAPGLFIQAVRVTKPKI 221 (293)
Q Consensus 196 -~~l~~~l~~~~~GI~I~~v~I~~i~~ 221 (293)
..++..+.=-..|+-|++|.|+++.|
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCCccceeEEcCCCeEEEEEeeeEecc
Confidence 11111111014689999999988764
No 46
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=79.64 E-value=7.2 Score=31.53 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118 164 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP 219 (293)
Q Consensus 164 ~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i 219 (293)
+.+++.+-..+++.+.+++.+ +.++.+.+++.+.++..+....-.-.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 667888889999999999974 57899999999999999974111235777777664
No 47
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=79.63 E-value=6.6 Score=33.72 Aligned_cols=30 Identities=37% Similarity=0.403 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9118 251 KDAETERKRAVIEAEKEAQIAKIQYEQKVM 280 (293)
Q Consensus 251 ~~AeA~~~~~ii~A~geaea~~i~~~~~~~ 280 (293)
..|+.++++.+++|+|++++..+.+++...
T Consensus 154 ~~A~~~~~a~i~~A~ge~~a~~~~aea~~~ 183 (215)
T cd03403 154 AEAEREKRAKIIEAEGERQAAILLAEAAKQ 183 (215)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 366777778888999998888888887643
No 48
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=76.89 E-value=45 Score=28.29 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118 163 FNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP 219 (293)
Q Consensus 163 ~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i 219 (293)
.+.+++.+...+++.|.+|+- ...++.+++.+.++..|.+ | .|.+|.++++
T Consensus 126 ~pqIRD~Ii~~LssKt~~eL~--Gk~~LKeEI~~rIN~iL~~---G-kV~~VYFTeF 176 (181)
T PRK06654 126 KVRLKDIIREYFSQKTGQELK--NESQIKAEIKARINSILRN---G-EIKDIAFTQI 176 (181)
T ss_pred cHHHHHHHHHHHHhCCHHHHc--CHHHHHHHHHHHHHHhcCC---C-ceEEEEEEEE
Confidence 466788888899999999997 6789999999999998873 2 3666665554
No 49
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=69.85 E-value=15 Score=31.13 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCC
Q psy9118 163 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP 219 (293)
Q Consensus 163 ~~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i 219 (293)
.+.+++++-..+++.+.+++.+ ..+..+.+++.+.++..+.+ | .|.+|.++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~---g-~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID---G-FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc---C-ceeEEEeEee
Confidence 4567888888999999999975 45899999999999999973 3 5777777664
No 50
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=69.30 E-value=18 Score=30.25 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHh-hhHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEecCC
Q psy9118 163 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPG-LFIQAVRVTKP 219 (293)
Q Consensus 163 ~~~~~~~lr~~~~~~tl~eil~-~~R~~i~~~i~~~l~~~l~~~~~G-I~I~~v~I~~i 219 (293)
.+.+++.+-..+++.+.+++.+ ..+..+.+++.+.++..++. ..| -.|.+|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~-~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQK-VTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHh-hcCCCceeEEeeeec
Confidence 4567888889999999999984 46888999999888888863 123 25778777764
No 51
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=66.68 E-value=31 Score=31.07 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=31.4
Q ss_pred CCeEEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy9118 207 PGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI 270 (293)
Q Consensus 207 ~GI~I~~v~I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea 270 (293)
..+++.++.... ..-..+.+.+...+..+...+.|+..++....+|++++++.++.|+|.+++
T Consensus 162 ~~V~i~~i~~p~-ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a 224 (291)
T COG0330 162 VDVEIKDIDPPE-EVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA 224 (291)
T ss_pred EEEEEeecCCCH-HHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 356666666422 122255554443333333444455544444445666666666666666555
No 52
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=60.01 E-value=1.1e+02 Score=26.34 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=6.4
Q ss_pred HHHHhhhHHHHHHHHH
Q psy9118 180 HEVYIDLFDQIDENLK 195 (293)
Q Consensus 180 ~eil~~~R~~i~~~i~ 195 (293)
..++...++.|..++.
T Consensus 79 ~~vLe~R~~~I~~~L~ 94 (204)
T PRK09174 79 GGIIETRRDRIAQDLD 94 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445222334444444
No 53
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=57.43 E-value=14 Score=22.74 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=19.1
Q ss_pred CCchhHHHHHHHHHHHHHHHhhceE
Q psy9118 46 AMADSLLVGIVSLFSLLLVFNYSFH 70 (293)
Q Consensus 46 ~m~~~~~~~~~~lv~~l~~l~~~~~ 70 (293)
..+|..+..++.+++++.+++++++
T Consensus 13 ELNRTSLy~GlLlifvl~vLFssYf 37 (39)
T PRK00753 13 ELNRTSLYLGLLLVFVLGILFSSYF 37 (39)
T ss_pred eechhhHHHHHHHHHHHHHHHHhhc
Confidence 3677777777777888888888875
No 54
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=57.05 E-value=1.3e+02 Score=25.96 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=8.7
Q ss_pred HHHHHhhhHHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLKT 196 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~~ 196 (293)
+..++.+.+..|.+.+.+
T Consensus 73 i~~~L~~R~~~I~~~L~~ 90 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQ 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445663334455555543
No 55
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=54.92 E-value=1.6e+02 Score=26.29 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=7.0
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+-.++.+.+..|...+.
T Consensus 30 i~~~l~eR~~~I~~~l~ 46 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQ 46 (250)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455222334444444
No 56
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=54.46 E-value=70 Score=29.59 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=6.0
Q ss_pred CCCCChHHHHH
Q psy9118 218 KPKIPETIRKN 228 (293)
Q Consensus 218 ~i~~p~~v~~a 228 (293)
++.++++..+-
T Consensus 249 ~~~l~~e~~~K 259 (321)
T PF07946_consen 249 RFKLSPEAKKK 259 (321)
T ss_pred eeeeCHHHHHH
Confidence 55566655543
No 57
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=50.36 E-value=1.4e+02 Score=24.44 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=7.1
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+..++.+.+..|...+.
T Consensus 33 i~~~l~~R~~~I~~~l~ 49 (164)
T PRK14473 33 VLNLLNERTRRIEESLR 49 (164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455323334444444
No 58
>CHL00038 psbL photosystem II protein L
Probab=48.62 E-value=21 Score=21.89 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=18.5
Q ss_pred CCchhHHHHHHHHHHHHHHHhhceE
Q psy9118 46 AMADSLLVGIVSLFSLLLVFNYSFH 70 (293)
Q Consensus 46 ~m~~~~~~~~~~lv~~l~~l~~~~~ 70 (293)
..+|..+..++.+++++.+++++++
T Consensus 12 ELNRTSLy~GLLlifvl~vlfssyf 36 (38)
T CHL00038 12 ELNRTSLYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3577777776777788888888765
No 59
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=46.44 E-value=1.7e+02 Score=24.28 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=6.9
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+..++.+.+..|...+.
T Consensus 43 i~~~l~~R~~~I~~~l~ 59 (175)
T PRK14472 43 ILSALEEREKGIQSSID 59 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455223334444433
No 60
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=46.19 E-value=1.7e+02 Score=24.15 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Q psy9118 252 DAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRV 288 (293)
Q Consensus 252 ~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~~~~~ 288 (293)
.|+.++++.+..|+.+.+..+-.+.++......+.++
T Consensus 99 ~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv 135 (167)
T PRK14475 99 KLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAA 135 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443343444444433333333
No 61
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=45.95 E-value=24 Score=28.47 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=10.4
Q ss_pred cCCCcchhhhhhhhcCCC
Q psy9118 29 PFQERTLSVQDKIRSGRA 46 (293)
Q Consensus 29 ~~~~~~~~~~~~~~~g~~ 46 (293)
++||+| ...++++|..
T Consensus 19 ~pppq~--~lqrlcs~~~ 34 (138)
T PF03954_consen 19 PPPPQS--LLQRLCSGPR 34 (138)
T ss_pred CCCChH--HHHHHcccch
Confidence 566665 4666777765
No 62
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=45.36 E-value=1.8e+02 Score=24.33 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=8.8
Q ss_pred CcHHHHHhhhHHHHHHHHH
Q psy9118 177 HNLHEVYIDLFDQIDENLK 195 (293)
Q Consensus 177 ~tl~eil~~~R~~i~~~i~ 195 (293)
..+..++...+..|...+.
T Consensus 47 kPI~~~l~~R~~~I~~~l~ 65 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIR 65 (184)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455666333344444443
No 63
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=44.60 E-value=1.9e+02 Score=24.81 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCeEEEEEEec
Q psy9118 196 TALQRELNEMAPGLFIQAVRVT 217 (293)
Q Consensus 196 ~~l~~~l~~~~~GI~I~~v~I~ 217 (293)
..+...|. .+|.-|+-+.|.
T Consensus 27 ~tv~~~L~--~yGWyil~~~I~ 46 (190)
T PF06936_consen 27 STVGSFLS--SYGWYILFGCIL 46 (190)
T ss_dssp ----------------------
T ss_pred HHHHHHHH--HhCHHHHHHHHH
Confidence 34455667 556555544443
No 64
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=44.52 E-value=1.5e+02 Score=23.12 Aligned_cols=30 Identities=13% Similarity=0.377 Sum_probs=15.9
Q ss_pred HHHHhHHHHHHHHHH--------HHHHhHHHHHHHhhh
Q psy9118 262 IEAEKEAQIAKIQYE--------QKVMEQESKQRVAKI 291 (293)
Q Consensus 262 i~A~geaea~~i~~~--------~~~~e~~~~~~~~~~ 291 (293)
=+++-+++-.+..++ ..-.+++++..|..|
T Consensus 47 yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~~ki~~i 84 (113)
T TIGR01147 47 YKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAKIREI 84 (113)
T ss_pred HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence 345555555444433 455566666666554
No 65
>KOG2668|consensus
Probab=43.65 E-value=1.8e+02 Score=27.42 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=6.2
Q ss_pred cCceEEEcCCc
Q psy9118 92 GPGFHAMIPFI 102 (293)
Q Consensus 92 ~pGlh~~~P~i 102 (293)
..|+-|.+|.+
T Consensus 55 segvP~~vtgV 65 (428)
T KOG2668|consen 55 SEGVPFVVTGV 65 (428)
T ss_pred ccCCceEeeee
Confidence 45665665543
No 66
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=42.93 E-value=2e+02 Score=23.95 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=7.8
Q ss_pred cHHHHHhhhHHHHHHHHH
Q psy9118 178 NLHEVYIDLFDQIDENLK 195 (293)
Q Consensus 178 tl~eil~~~R~~i~~~i~ 195 (293)
.+.+++.+.+..|.+.+.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (173)
T PRK13453 42 PLKDVMDKRERDINRDID 59 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556333334444443
No 67
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=42.82 E-value=2.4e+02 Score=24.90 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=7.3
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+..++.+.+..|...+.
T Consensus 30 i~~~l~~R~~~I~~~l~ 46 (246)
T TIGR03321 30 ILDAMDAREKKIAGELA 46 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455333344444444
No 68
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=42.40 E-value=2e+02 Score=23.86 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=7.4
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+..++...+..|...+.
T Consensus 44 I~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 44 LGKILEERREAILQALK 60 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566333334444433
No 69
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=42.28 E-value=2e+02 Score=23.77 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=7.5
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+..++.+.+..|...+.
T Consensus 35 i~~~le~R~~~I~~~l~ 51 (167)
T PRK14475 35 LAGALDAYAAKIQAELD 51 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455333344444444
No 70
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=42.18 E-value=16 Score=22.32 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=15.7
Q ss_pred CchhHHHHHHHHHHHHHHHhhceE
Q psy9118 47 MADSLLVGIVSLFSLLLVFNYSFH 70 (293)
Q Consensus 47 m~~~~~~~~~~lv~~l~~l~~~~~ 70 (293)
.+|..+..++++++++.+++++++
T Consensus 12 LNRTSLY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 12 LNRTSLYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHhhhhh
Confidence 456666666677778888887753
No 71
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=39.21 E-value=2.4e+02 Score=24.41 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=51.3
Q ss_pred cccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhh-HHHHHHHHHHHH
Q psy9118 120 VPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL-FDQIDENLKTAL 198 (293)
Q Consensus 120 ~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~-R~~i~~~i~~~l 198 (293)
.++.|+||..+.+-.+.+- ..++. ..-...||....+.+...+++.++++++..- .+.|+.+|....
T Consensus 100 vdvkTkDGy~lRv~~i~~T----~~ra~--------~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~ 167 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALT----TKRAR--------TSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEA 167 (203)
T ss_pred EEEEcCCCCEEEEEEEEEE----chhhh--------hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhh
Confidence 4678999998876433211 11111 1124568999999999999999999998311 234455555444
Q ss_pred HHHhhcCCCCeEEEEEEecC
Q psy9118 199 QRELNEMAPGLFIQAVRVTK 218 (293)
Q Consensus 199 ~~~l~~~~~GI~I~~v~I~~ 218 (293)
+...- -.-++|..+.+..
T Consensus 168 k~IyP--lr~veIrKvkvl~ 185 (203)
T PRK04057 168 KKIYP--LRRVEIRKSKVLA 185 (203)
T ss_pred hhccC--cceEEEEEEEEEe
Confidence 44332 2346777776643
No 72
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=38.87 E-value=2.1e+02 Score=23.22 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=7.6
Q ss_pred cHHHHHhhhHHHHHHHHH
Q psy9118 178 NLHEVYIDLFDQIDENLK 195 (293)
Q Consensus 178 tl~eil~~~R~~i~~~i~ 195 (293)
.+..++.+.+..+...+.
T Consensus 29 pi~~~l~~R~~~I~~~l~ 46 (159)
T PRK13461 29 KIKAVIDSRQSEIDNKIE 46 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555323334444443
No 73
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=38.29 E-value=2.3e+02 Score=23.37 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=8.0
Q ss_pred cHHHHHhhhHHHHHHHHH
Q psy9118 178 NLHEVYIDLFDQIDENLK 195 (293)
Q Consensus 178 tl~eil~~~R~~i~~~i~ 195 (293)
.+..++.+....|..++.
T Consensus 28 PI~~~LeeR~~~I~~~Ld 45 (154)
T PRK06568 28 AILNSLDAKILEVQEKVL 45 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555322334444444
No 74
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=38.09 E-value=2.3e+02 Score=23.42 Aligned_cols=18 Identities=22% Similarity=0.456 Sum_probs=7.6
Q ss_pred cHHHHHhhhHHHHHHHHH
Q psy9118 178 NLHEVYIDLFDQIDENLK 195 (293)
Q Consensus 178 tl~eil~~~R~~i~~~i~ 195 (293)
.+..++.+.+..|.+.+.
T Consensus 46 Pi~~~l~~R~~~I~~~l~ 63 (167)
T PRK08475 46 PLKNFYKSRINKISKRLE 63 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555323334444443
No 75
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=37.65 E-value=2.4e+02 Score=23.39 Aligned_cols=17 Identities=0% Similarity=0.135 Sum_probs=6.7
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+..++.+.+..|...+.
T Consensus 41 i~~~l~~R~~~I~~~l~ 57 (173)
T PRK13460 41 ILKALDERASGVQNDIN 57 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455322333443333
No 76
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=37.33 E-value=4e+02 Score=25.91 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=8.1
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+..++.+.++.|.+.+.
T Consensus 26 i~~~l~~R~~~I~~~L~ 42 (445)
T PRK13428 26 VRRLMAARQDTVRQQLA 42 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566333344555444
No 77
>KOG2072|consensus
Probab=34.73 E-value=3.2e+02 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=14.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHh
Q psy9118 259 RAVIEAEKEAQIAKIQYEQKVME 281 (293)
Q Consensus 259 ~~ii~A~geaea~~i~~~~~~~e 281 (293)
+.+++...+.++.++..+.+..+
T Consensus 608 kRl~ee~~Ere~~R~l~E~e~i~ 630 (988)
T KOG2072|consen 608 KRLIEEKKEREAKRILREKEAIR 630 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777765443
No 78
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=33.40 E-value=3.9e+02 Score=27.47 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=13.3
Q ss_pred HHHHHH-HhhcCCCCeEEEEE
Q psy9118 195 KTALQR-ELNEMAPGLFIQAV 214 (293)
Q Consensus 195 ~~~l~~-~l~~~~~GI~I~~v 214 (293)
-+.|+. .|. ..||.|+|-
T Consensus 520 ~D~iRd~~L~--~~Gi~l~D~ 538 (651)
T PTZ00399 520 CDKLRDEWLP--NLGIRIEDK 538 (651)
T ss_pred HHHHHHHHHH--HCCCEEEEc
Confidence 356666 477 679999985
No 79
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=33.31 E-value=2.4e+02 Score=22.20 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=7.4
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+..++.+.+..+...+.
T Consensus 30 i~~~l~~R~~~I~~~l~ 46 (140)
T PRK07353 30 VGKVVEEREDYIRTNRA 46 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555333344444444
No 80
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.56 E-value=3.6e+02 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=12.6
Q ss_pred EEEEeCCccccccccCceEEEcCC
Q psy9118 78 GVYFRGGALLSTISGPGFHAMIPF 101 (293)
Q Consensus 78 gVv~~~Gk~~~~v~~pGlh~~~P~ 101 (293)
-=++++|+ ...-|.+|..-|.
T Consensus 61 ~~vV~gGg---~~v~Pi~q~~~r~ 81 (548)
T COG2268 61 QKVVRGGG---AIVMPIFQTIERM 81 (548)
T ss_pred ccEEecCc---eEEecceeeeEEe
Confidence 33445554 2346888887665
No 81
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=31.59 E-value=3e+02 Score=22.75 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=10.7
Q ss_pred HHHHhHHHHHHHHHH-HHHHhHHHHHHH
Q psy9118 262 IEAEKEAQIAKIQYE-QKVMEQESKQRV 288 (293)
Q Consensus 262 i~A~geaea~~i~~~-~~~~e~~~~~~~ 288 (293)
+.+++..++.++... ....+.|.++++
T Consensus 108 ii~~A~~ea~~~~~~a~~~ie~Ek~~a~ 135 (167)
T PRK08475 108 IEKQTKDDIENLIKSFEELMEFEVRKME 135 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433332 233344444443
No 82
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=30.47 E-value=1.7e+02 Score=24.41 Aligned_cols=19 Identities=42% Similarity=0.394 Sum_probs=12.8
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q psy9118 260 AVIEAEKEAQIAKIQYEQK 278 (293)
Q Consensus 260 ~ii~A~geaea~~i~~~~~ 278 (293)
.+.+|+++|++..+.++.+
T Consensus 174 ~~~~a~~ea~~~~~~A~ge 192 (196)
T cd03401 174 VVEKAEQEKQAAVIRAEGE 192 (196)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3467777777777766654
No 83
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.34 E-value=58 Score=24.56 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=8.4
Q ss_pred CchhHHHHHHHHHHHHHHHhhc
Q psy9118 47 MADSLLVGIVSLFSLLLVFNYS 68 (293)
Q Consensus 47 m~~~~~~~~~~lv~~l~~l~~~ 68 (293)
|.+..+++ +.+++++++|.+|
T Consensus 1 MaSK~~ll-L~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLL-LGLLLAALLLISS 21 (95)
T ss_pred CchhHHHH-HHHHHHHHHHHHh
Confidence 44444444 2333333333333
No 84
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=29.84 E-value=2.5e+02 Score=21.32 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.4
Q ss_pred HhHHHHHHH
Q psy9118 265 EKEAQIAKI 273 (293)
Q Consensus 265 ~geaea~~i 273 (293)
++..++.++
T Consensus 47 eA~~eA~~i 55 (103)
T PRK08404 47 KAEEEAQKL 55 (103)
T ss_pred HHHHHHHHH
Confidence 333333333
No 85
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=26.70 E-value=3.7e+02 Score=22.22 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=3.9
Q ss_pred HHHhHHHHHH
Q psy9118 263 EAEKEAQIAK 272 (293)
Q Consensus 263 ~A~geaea~~ 272 (293)
.+++++++.+
T Consensus 106 ~~~A~~e~~~ 115 (174)
T PRK07352 106 EKQAIEDMAR 115 (174)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 86
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=26.67 E-value=3.7e+02 Score=22.22 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=9.6
Q ss_pred cHHHHHhhhHHHHHHHHHHH
Q psy9118 178 NLHEVYIDLFDQIDENLKTA 197 (293)
Q Consensus 178 tl~eil~~~R~~i~~~i~~~ 197 (293)
.+..++...++.+..++.++
T Consensus 34 pI~~iLe~R~~~I~~~L~~A 53 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQA 53 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 34556633334455555543
No 87
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=26.35 E-value=3.4e+02 Score=21.70 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=9.0
Q ss_pred cHHHHHhhhHHHHHHHHHH
Q psy9118 178 NLHEVYIDLFDQIDENLKT 196 (293)
Q Consensus 178 tl~eil~~~R~~i~~~i~~ 196 (293)
.+..++.+.+..+...+.+
T Consensus 31 Pi~~~l~~R~~~I~~~l~~ 49 (141)
T PRK08476 31 PLLKFMDNRNASIKNDLEK 49 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445663333445555543
No 88
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=26.17 E-value=1.1e+02 Score=21.41 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=14.9
Q ss_pred EeCCccccc--cccCceEEEcCCc
Q psy9118 81 FRGGALLST--ISGPGFHAMIPFI 102 (293)
Q Consensus 81 ~~~Gk~~~~--v~~pGlh~~~P~i 102 (293)
..+|+.-++ ...+|..|..|+.
T Consensus 25 ~~lGrLPGDi~i~~~~~~fyfPi~ 48 (64)
T PF11146_consen 25 FGLGRLPGDIRIRRGNFTFYFPIT 48 (64)
T ss_pred CCCCCCCccEEEEECCEEEEEehH
Confidence 337775433 4578888888874
No 89
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=25.68 E-value=3.8e+02 Score=22.10 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHhH
Q psy9118 252 DAETERKRAVIEAEKE 267 (293)
Q Consensus 252 ~AeA~~~~~ii~A~ge 267 (293)
+|+.+.++.+..|+.+
T Consensus 105 ~A~~ea~~~~~~a~~~ 120 (173)
T PRK13460 105 ETNNEVKAQKDQAVKE 120 (173)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 90
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=24.87 E-value=4.1e+02 Score=22.53 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=3.5
Q ss_pred CCChHHHH
Q psy9118 220 KIPETIRK 227 (293)
Q Consensus 220 ~~p~~v~~ 227 (293)
.+|..+..
T Consensus 15 ~~~~~ii~ 22 (191)
T PF06188_consen 15 DLPEPIIR 22 (191)
T ss_pred CCcccccc
Confidence 34444443
No 91
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.11 E-value=4e+02 Score=21.71 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=7.0
Q ss_pred HHHHHhhhHHHHHHHHH
Q psy9118 179 LHEVYIDLFDQIDENLK 195 (293)
Q Consensus 179 l~eil~~~R~~i~~~i~ 195 (293)
+..++...+..|..++.
T Consensus 33 i~~~l~~R~~~I~~~l~ 49 (164)
T PRK14471 33 ILGAVKEREDSIKNALA 49 (164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455223334444444
No 92
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=23.62 E-value=4e+02 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9118 252 DAETERKRAVIEAEKEAQIAKIQYEQKVM 280 (293)
Q Consensus 252 ~AeA~~~~~ii~A~geaea~~i~~~~~~~ 280 (293)
+|+.+.++.+..|+.+-+..+-.+.....
T Consensus 111 ~A~~ea~~~~~~a~~~i~~ek~~a~~~l~ 139 (156)
T CHL00118 111 QAQKYIDSLLNEATKQLEAQKEKALKSLE 139 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333333333333
No 93
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=22.78 E-value=3.3e+02 Score=20.37 Aligned_cols=14 Identities=14% Similarity=0.525 Sum_probs=6.2
Q ss_pred HHHHhHHHHHHHhh
Q psy9118 277 QKVMEQESKQRVAK 290 (293)
Q Consensus 277 ~~~~e~~~~~~~~~ 290 (293)
....++++...|..
T Consensus 68 ~~~l~~et~~~i~~ 81 (105)
T PF03179_consen 68 AEELEKETEEKIEE 81 (105)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 94
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=22.21 E-value=3.7e+02 Score=23.01 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=44.1
Q ss_pred cccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHHHHHHHHHHH
Q psy9118 120 VPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQ 199 (293)
Q Consensus 120 ~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i~~~i~~~l~ 199 (293)
.++.|+||..+.+-.+. +. ..++ . ..-...|+....+.+.+.+++.++++++. .-+...+..+|.
T Consensus 106 ~dvkT~DGy~lRvf~i~---fT-~~ra-------~-~sq~~~IRk~m~~ii~~~~~~~~~~e~V~---~li~~~i~~eI~ 170 (194)
T PF01015_consen 106 VDVKTKDGYLLRVFCIA---FT-KKRA-------K-SSQIKAIRKKMVEIITEEASELDLKELVK---KLIPGSIGKEIE 170 (194)
T ss_dssp EEEEETTTEEEEEEEEE---EE------------T-CHHHHHHHHHHHHHHHHHCCTSHHHHHHH---HHCTTHHHHHHH
T ss_pred EEEEcCCCcEEEEEEEE---EE-eecc-------c-chHHHHHHHHHHHHHHHHhccCcHHHHHH---HHccchHHHHHH
Confidence 46789999877653221 11 1111 0 01245689999999999999999999983 234555666666
Q ss_pred HHhhc
Q psy9118 200 RELNE 204 (293)
Q Consensus 200 ~~l~~ 204 (293)
..+.+
T Consensus 171 k~~k~ 175 (194)
T PF01015_consen 171 KACKK 175 (194)
T ss_dssp HHHCT
T ss_pred HHhcc
Confidence 66653
No 95
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.93 E-value=4.7e+02 Score=21.78 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHhHHHHHHHhhh
Q psy9118 223 ETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI------AKIQYEQKVMEQESKQRVAKI 291 (293)
Q Consensus 223 ~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea------~~i~~~~~~~e~~~~~~~~~~ 291 (293)
.+....++...++-... +++....+..+|+..++..+..|+.+++. .+|..+.+...++....+..+
T Consensus 78 ~~~l~e~e~~L~~A~~e--a~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~l 150 (184)
T PRK13455 78 QTLLASYERKQREVQEQ--ADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 96
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.72 E-value=5.2e+02 Score=22.20 Aligned_cols=8 Identities=0% Similarity=-0.027 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q psy9118 281 EQESKQRV 288 (293)
Q Consensus 281 e~~~~~~~ 288 (293)
+++.+++.
T Consensus 159 ~~ek~~A~ 166 (204)
T PRK09174 159 AAIKAKAM 166 (204)
T ss_pred HHHHHHHH
Confidence 33333333
No 97
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=21.70 E-value=4.4e+02 Score=21.41 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q psy9118 251 KDAETERKRAVIEAEKEAQ 269 (293)
Q Consensus 251 ~~AeA~~~~~ii~A~geae 269 (293)
.+|+..++..+.+|+.+++
T Consensus 85 ~~a~~~~~~~l~~A~~ea~ 103 (164)
T PRK14473 85 ERARAQEAEIIAQARREAE 103 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
Done!