Query psy9118
Match_columns 293
No_of_seqs 196 out of 1583
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 19:22:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 99.9 6E-24 2E-28 180.8 13.9 151 101-277 2-152 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 8.4E-24 2.9E-28 170.2 10.0 126 97-230 3-128 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 1.8E-20 6.1E-25 152.5 10.3 127 101-230 3-133 (143)
4 2rpb_A Hypothetical membrane p 99.7 5.6E-18 1.9E-22 132.0 8.1 110 107-224 4-113 (113)
5 2zuo_A MVP, major vault protei 98.2 0.00032 1.1E-08 69.8 21.8 151 69-224 459-648 (861)
6 2zuo_A MVP, major vault protei 78.8 13 0.00045 37.3 10.7 37 251-287 724-760 (861)
7 3arc_L Photosystem II reaction 47.4 13 0.00045 21.7 2.2 26 45-70 10-35 (37)
8 2kk7_A V-type ATP synthase sub 44.6 58 0.002 20.6 5.4 15 262-276 26-40 (52)
9 4efa_E V-type proton ATPase su 43.7 1.4E+02 0.0048 24.8 10.1 13 222-234 10-22 (233)
10 4efa_G V-type proton ATPase su 42.1 1.1E+02 0.0037 23.0 8.5 6 233-238 17-22 (119)
11 3bk6_A PH stomatin; archaea, t 31.5 82 0.0028 25.1 5.7 23 207-230 105-127 (188)
12 3j20_A 30S ribosomal protein S 20.8 3.5E+02 0.012 22.1 8.8 83 120-216 107-190 (198)
13 3iox_A AGI/II, PA; alpha helix 20.4 5.4E+02 0.018 24.2 9.4 60 233-292 4-65 (497)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.91 E-value=6e-24 Score=180.80 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=128.4
Q ss_pred CcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHH
Q psy9118 101 FITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLH 180 (293)
Q Consensus 101 ~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~ 180 (293)
|++++..+|+|+++++++.+.++|+||++|.+++++.|++.||.++. +...+....+.+.++++||+++|+++++
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~-----~~v~~~~~~i~~~~~~~lR~vig~~~l~ 76 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAV-----TQVKNYIMATSQISQTTLRSVIGQAHLD 76 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHH-----HSSSCHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHH-----HHhcCHHHHHHHHHHHHHHHHHccCCHH
Confidence 57899999999999999888999999999999999888888887664 2222234568899999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9118 181 EVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRA 260 (293)
Q Consensus 181 eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~~~~ae~~~~~~A~q~~~~~e~~AeA~~~~~ 260 (293)
+++ ++|++|+..+.+.+++.++ +|||+|++|.|++++||+++.+++.+. .+||.++++.
T Consensus 77 ell-~~R~~i~~~i~~~l~~~~~--~~GI~v~~v~I~~i~~p~ev~~a~~~~------------------~~Aere~~A~ 135 (188)
T 3bk6_A 77 ELL-SERDKLNMQLQRIIDEATD--PWGIKVTAVEIKDVELPAGMQKAMARQ------------------AEAERERRAR 135 (188)
T ss_dssp HHH-HCHHHHHHHHHHHHHHHTG--GGTEEEEEEEEEEEEEETTHHHHHHHH------------------HHHHHHHHHH
T ss_pred HHH-hhHHHHHHHHHHHHHHHHH--hcCeEEEEEEEEecCCCHHHHHHHHHH------------------HHHHHHHHHH
Confidence 999 5899999999999999999 889999999999999999999997521 2455566667
Q ss_pred HHHHHhHHHHHHHHHHH
Q psy9118 261 VIEAEKEAQIAKIQYEQ 277 (293)
Q Consensus 261 ii~A~geaea~~i~~~~ 277 (293)
+++|+|+++|+++.+++
T Consensus 136 i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 136 ITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 77888888877777665
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.90 E-value=8.4e-24 Score=170.17 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=100.9
Q ss_pred EEcCCcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhc
Q psy9118 97 AMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSI 176 (293)
Q Consensus 97 ~~~P~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~ 176 (293)
++.||+++|.++|+|+++++++++.++|+|++.+.+|+++.|++.||.+++ |+..+.+..+..+++++||+++|+
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~-----~~v~~~~~~l~~~~~~~lR~vig~ 77 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAV-----ANITNADSATRLLAQTTLRNALGT 77 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHH-----HSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhH-----hhhhhHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999999999989999999999999999999999988763 344455778999999999999999
Q ss_pred CcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHH
Q psy9118 177 HNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230 (293)
Q Consensus 177 ~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~ 230 (293)
+++++++ ++|++++..+++.+++.++ +|||+|.+|.|++++||+++.+|+.
T Consensus 78 ~~ldeil-~~r~~i~~~i~~~l~~~~~--~~GI~V~~V~ikdi~~P~~v~~am~ 128 (133)
T 4fvg_A 78 KNLSQIL-SDREEIAHHMQSTLDDATD--DWGIKVERVEIKDVKLPVQLQRAMA 128 (133)
T ss_dssp SCHHHHH-HCHHHHHHHHHHHHHHHHG--GGTEEEEEEEEEEEECCCC------
T ss_pred ccHHHHH-hhHHHHHHHHHHHHHHHHh--cCCEEEEEEEEEecCCCHHHHHHHH
Confidence 9999999 5899999999999999999 8899999999999999999999974
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.83 E-value=1.8e-20 Score=152.52 Aligned_cols=127 Identities=9% Similarity=0.122 Sum_probs=115.0
Q ss_pred CcCeEEEEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEe-chhcHHHHHHhh-ccc--ccchhHHHHHHHHHHHHhhc
Q psy9118 101 FITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVL-SVSSVYDIVKNY-TAD--YDKALIFNKVHHELNQFCSI 176 (293)
Q Consensus 101 ~i~~v~~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~-d~~~i~~~~~~~-~~~--~~~~~l~~~~~~~lr~~~~~ 176 (293)
|++++.++|+|+++++++++.+.|+|+.++.+|++++|++. ||.++.....+| +.. ..+..+.+.++++||+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999987 688887777654 322 23677899999999999999
Q ss_pred CcHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChHHHHHHH
Q psy9118 177 HNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 230 (293)
Q Consensus 177 ~tl~eil~~~R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~v~~a~~ 230 (293)
+++++++ ++|++|++.+.+.+.+.++ +|||+|.+|.|++|++|+++.+|+.
T Consensus 83 ~tldeil-s~R~~i~~~v~~~~~~~~~--~~Gi~V~~v~IkdI~~p~~~~~am~ 133 (143)
T 1win_A 83 LTVEQIY-QDRDQFAKLVREVAAPDVG--RMGIEILSFTIKDVYDKVDYLSSLG 133 (143)
T ss_dssp SCHHHHH-HTHHHHHHHHHHHHHHHHT--TTTEEEEEEECCCEECTTCHHHHHC
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHHHHH--hCCCEEEEEEEEeecChHHHHHHHH
Confidence 9999999 5999999999999999999 8999999999999999999999985
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.73 E-value=5.6e-18 Score=132.01 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=98.3
Q ss_pred EEEeEEEEEecCCcccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhh
Q psy9118 107 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL 186 (293)
Q Consensus 107 ~v~~r~q~~~~~~~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~ 186 (293)
.+|+|+++++++.+.+.|+|++++.+++++.|++.||.++..-+ ......|.+.+++++|+++|++++++++ ++
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v-----~~~~~~l~~~~~~~lR~vig~~~l~ei~-~~ 77 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNV-----SDFLMAIVKLAQTNLRAIIGEMELDETL-SG 77 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTT-----THHHHHHHHHHHHHHHHHHTSCCTTHHH-HC
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCcHHHHH-hC
Confidence 47899999999989999999999999999888888987764322 2235679999999999999999999999 59
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEEecCCCCChH
Q psy9118 187 FDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPET 224 (293)
Q Consensus 187 R~~i~~~i~~~l~~~l~~~~~GI~I~~v~I~~i~~p~~ 224 (293)
|+++++.+++.+++.++ +|||+|.+|.|++++||++
T Consensus 78 R~~i~~~i~~~l~~~~~--~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 78 RDIINARLREELDKITD--RWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHHHHG--GGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHHH--hcCeEEEEEEEEEecCCCC
Confidence 99999999999999999 7899999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.16 E-value=0.00032 Score=69.84 Aligned_cols=151 Identities=8% Similarity=0.046 Sum_probs=95.5
Q ss_pred eEEecCCeEEEEEeC--CccccccccCceEEEcCCcCeEEEEEeE---------EEEE--ec------CCcccccCCCCe
Q psy9118 69 FHKIEEGHVGVYFRG--GALLSTISGPGFHAMIPFITTFRHVQVT---------LQTD--EV------KNVPCGTSGGVM 129 (293)
Q Consensus 69 ~~~V~~ge~gVv~~~--Gk~~~~v~~pGlh~~~P~i~~v~~v~~r---------~q~~--~~------~~~~v~T~D~~~ 129 (293)
.|.||.+...-++.+ |+. +.++||-+.+.-|- +.+..++++ +.++ .. +-..|-|+|...
T Consensus 459 ~~rvphnaaVqvyDy~~~~~-RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhAr 536 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRA-RVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHAR 536 (861)
T ss_dssp EEECCTTEEEEEECSSSCCE-EEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCE
T ss_pred EEEcCCCeEEEEEecCCCce-EEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceE
Confidence 357888888888875 443 36889999666553 444444432 2332 11 124678999999
Q ss_pred EEEEEEEEEEE-e-chhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhhHHHH-HHHHHHH---------
Q psy9118 130 IYFDRIEVVNV-L-SVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQI-DENLKTA--------- 197 (293)
Q Consensus 130 v~vd~~~v~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~R~~i-~~~i~~~--------- 197 (293)
+.+.....|++ + |+....+..+-|...+.-.-+=..+.+.+|..+++.+++++. .+...| ...+...
T Consensus 537 L~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FH-knsa~iir~aVFg~~~~~~~~~~ 615 (861)
T 2zuo_A 537 LQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFH-KNSARIIRMAVFGFEMSEDTGPD 615 (861)
T ss_dssp EEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHH-HHHHHHHHHHSSCCC--------
T ss_pred EEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHh-hhHHHHHHHhhcCCCcccccccc
Confidence 98876655665 2 665555555555543333346677888999999999999998 344333 2222110
Q ss_pred ------HHHH--hhcCCCCeEEEEEEecCCCCChH
Q psy9118 198 ------LQRE--LNEMAPGLFIQAVRVTKPKIPET 224 (293)
Q Consensus 198 ------l~~~--l~~~~~GI~I~~v~I~~i~~p~~ 224 (293)
+... +. ..|+-|++|.|+.+.+-++
T Consensus 616 ~~~~~~~~~~~~F~--~N~lvitsVDvqsvEpvDq 648 (861)
T 2zuo_A 616 GTLLPKARDQAVFP--QNGLVVSSVDVQSVEPVDQ 648 (861)
T ss_dssp -----CCCSCEECT--TTCEEEEEEEEEEEEESSH
T ss_pred cccccCcccceEEc--cCCeEEEEEeeeeecccCH
Confidence 0001 22 4699999999999998765
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=78.78 E-value=13 Score=37.32 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHH
Q psy9118 251 KDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQR 287 (293)
Q Consensus 251 ~~AeA~~~~~ii~A~geaea~~i~~~~~~~e~~~~~~ 287 (293)
++|+|.+++..|++++.-+.+++.+++...+.+++..
T Consensus 724 AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~~~ael~ 760 (861)
T 2zuo_A 724 AEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE 760 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhHHHhhhhHHHHH
Confidence 3455555555666666666666666655555554443
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=47.42 E-value=13 Score=21.74 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=19.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhceE
Q psy9118 45 RAMADSLLVGIVSLFSLLLVFNYSFH 70 (293)
Q Consensus 45 ~~m~~~~~~~~~~lv~~l~~l~~~~~ 70 (293)
...+|..+..++.+++++.+++++++
T Consensus 10 VELNRTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 10 VELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceechhhHHHHHHHHHHHHHHhhhhc
Confidence 34677777777777788888887753
No 8
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=44.62 E-value=58 Score=20.61 Aligned_cols=15 Identities=47% Similarity=0.395 Sum_probs=6.8
Q ss_pred HHHHhHHHHHHHHHH
Q psy9118 262 IEAEKEAQIAKIQYE 276 (293)
Q Consensus 262 i~A~geaea~~i~~~ 276 (293)
+.++++++|.+|..+
T Consensus 26 Il~eA~~eA~~Ii~e 40 (52)
T 2kk7_A 26 IISEAEAEKAKILEK 40 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 9
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=43.69 E-value=1.4e+02 Score=24.76 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=9.0
Q ss_pred ChHHHHHHHHHHH
Q psy9118 222 PETIRKNYELMEA 234 (293)
Q Consensus 222 p~~v~~a~~~~~a 234 (293)
|.++.+-+++|.+
T Consensus 10 ~~~v~~~i~~m~~ 22 (233)
T 4efa_E 10 PNQVNDELNKMQA 22 (233)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677777777754
No 10
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=42.09 E-value=1.1e+02 Score=23.02 Aligned_cols=6 Identities=50% Similarity=0.579 Sum_probs=2.7
Q ss_pred HHHHHH
Q psy9118 233 EAEKTK 238 (293)
Q Consensus 233 ~ae~~~ 238 (293)
.||+++
T Consensus 17 ~AEk~A 22 (119)
T 4efa_G 17 QAEKEA 22 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 445443
No 11
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=31.51 E-value=82 Score=25.09 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=14.9
Q ss_pred CCeEEEEEEecCCCCChHHHHHHH
Q psy9118 207 PGLFIQAVRVTKPKIPETIRKNYE 230 (293)
Q Consensus 207 ~GI~I~~v~I~~i~~p~~v~~a~~ 230 (293)
..+.|.++.+.+ .+-+.+.+..+
T Consensus 105 ~~v~I~~i~~p~-ev~~a~~~~~~ 127 (188)
T 3bk6_A 105 TAVEIKDVELPA-GMQKAMARQAE 127 (188)
T ss_dssp EEEEEEEEEEET-THHHHHHHHHH
T ss_pred EEEEEEecCCCH-HHHHHHHHHHH
Confidence 378899998754 45565555444
No 12
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.76 E-value=3.5e+02 Score=22.11 Aligned_cols=83 Identities=8% Similarity=0.090 Sum_probs=49.9
Q ss_pred cccccCCCCeEEEEEEEEEEEechhcHHHHHHhhcccccchhHHHHHHHHHHHHhhcCcHHHHHhhh-HHHHHHHHHHHH
Q psy9118 120 VPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL-FDQIDENLKTAL 198 (293)
Q Consensus 120 ~~v~T~D~~~v~vd~~~v~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~tl~eil~~~-R~~i~~~i~~~l 198 (293)
.++.|.||..+.+-.+. +... ++ . ..-...|+....+.+...+++.++.++...- -+.+..+|..+.
T Consensus 107 vdVkT~DGy~lRvf~i~---fT~k-ra-------~-~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~ 174 (198)
T 3j20_A 107 FNITTKDGYKLRVMAMA---IAMR-RI-------Q-TSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEA 174 (198)
T ss_dssp EEEECTTSCEEEEEEEE---EECS-SC-------C-CTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHH
T ss_pred EEEEecCCCEEEEEEEE---EEec-cc-------c-chhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhh
Confidence 46789999888653221 1111 10 0 1124568888999999999999999998321 255666666655
Q ss_pred HHHhhcCCCCeEEEEEEe
Q psy9118 199 QRELNEMAPGLFIQAVRV 216 (293)
Q Consensus 199 ~~~l~~~~~GI~I~~v~I 216 (293)
+...- -.-++|.-+.+
T Consensus 175 k~IyP--l~~V~IrKvKv 190 (198)
T 3j20_A 175 KKIYP--LRKAEIRKIKV 190 (198)
T ss_dssp HHHSC--EEEEEEEEEEE
T ss_pred Ccccc--cceEEEEEEEE
Confidence 55432 12344544443
No 13
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=20.36 E-value=5.4e+02 Score=24.16 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHhHHHHHHHhhhc
Q psy9118 233 EAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI--AKIQYEQKVMEQESKQRVAKIE 292 (293)
Q Consensus 233 ~ae~~~~~~A~q~~~~~e~~AeA~~~~~ii~A~geaea--~~i~~~~~~~e~~~~~~~~~~~ 292 (293)
+++.|..+-+-|..-+..+.|-|++++.=..+.++-+| ++|.++-+..++.++.+-++.|
T Consensus 4 ~a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye 65 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYE 65 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Done!