BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9119
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And
Plastidial Type A Methionine Sulfoxide Reductases
Length = 261
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 17 DHTEVTQVDFDPSVISYKEILRIFWKHHDPTV------QMKTQYRSMILHVNPEDKEVAE 70
+H EV +V +DP S+ ++ + W HDPT + TQYRS I + PE ++ A+
Sbjct: 143 NHNEVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAK 202
Query: 71 KSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
+SL ++ + I T ++P K+FY AEE+
Sbjct: 203 ESLERQQKLLNRKIVTEILPAKKFYRAEEY 232
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|B Chain B, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|C Chain C, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
Length = 211
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 18/107 (16%)
Query: 7 HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
+R +C+ +G H E ++ +DPSVISY+++L++FW++HDP M+ TQYRS I
Sbjct: 82 YREVCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYP 140
Query: 61 VNPEDKEVAEKS--------LAEEKTKHRKPITTLVVPFKRFYDAEE 99
+ PE A S LA + +H ITT + FY AE+
Sbjct: 141 LTPEQDAAARASLERFQAAMLAADDDRH---ITTEIANATPFYYAED 184
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of
Methionine Sulfoxide Reductase A From Escherichia Coli,
A 23 Kda Protein
Length = 212
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 18/107 (16%)
Query: 7 HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
+R +C+ +G H E ++ +DPSVISY+++L++FW++HDP M+ TQYRS I
Sbjct: 83 YREVCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYP 141
Query: 61 VNPEDKEVAEKS--------LAEEKTKHRKPITTLVVPFKRFYDAEE 99
+ PE A S LA + +H ITT + FY AE+
Sbjct: 142 LTPEQDAAARASLERFQAAMLAADDDRH---ITTEIANATPFYYAED 185
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of
E. Coli Methionine Sulfoxide Reductase A (Msra)
Length = 211
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 19/103 (18%)
Query: 13 VYSGD--HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPE 64
V SGD H E ++ +DPSVISY+++L++FW++HDP M+ TQYRS I + PE
Sbjct: 85 VSSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPE 144
Query: 65 DKEVAEKS--------LAEEKTKHRKPITTLVVPFKRFYDAEE 99
A S LA + +H ITT + FY AE+
Sbjct: 145 QDAAARASLERFQAAMLAADDDRH---ITTEIANATPFYYAED 184
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide
Reductase From Sinorhizobium Meliloti 1021
Length = 168
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 16 GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVA 69
G H E ++ FDP ISY+ IL +F++ HDPT + + T YRS I +V+ E K +A
Sbjct: 46 GTHAEGIEIIFDPERISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIA 105
Query: 70 EKSLAEEKTKHRKP--ITTLVVPFKRFYDAE 98
++++A+ + P + T V P + F++AE
Sbjct: 106 QETIADVEASGLWPGKVVTEVEPVRDFWEAE 136
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Oxidized Form)
Length = 193
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 18 HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVAEK 71
H E +V +D +S +IL+ F++ DPT K TQYRS + + +P +K V
Sbjct: 52 HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAA 111
Query: 72 SLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
+L E+ K++ P+ P K FYDAEE+
Sbjct: 112 ALKREQQKYQLPLVVENEPLKNFYDAEEY 140
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 194
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 18 HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVAEK 71
H E +V +D +S +IL+ F++ DPT K TQYRS + + +P +K V
Sbjct: 53 HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAA 112
Query: 72 SLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
+L E+ K++ P+ P K FYDAEE+
Sbjct: 113 ALKREQQKYQLPLVVENEPLKNFYDAEEY 141
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Complex With A Substrate)
Length = 194
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 18 HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVAEK 71
H E +V +D +S +IL+ F++ DPT K TQYRS + + +P +K V
Sbjct: 53 HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAA 112
Query: 72 SLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
+L E+ K++ P+ P K FYDAEE+
Sbjct: 113 ALKREQQKYQLPLVVENEPLKNFYDAEEY 141
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria
Meningitidis Pilb (sulfenic Acid Form)
Length = 194
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 18 HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVAEK 71
H E +V +D +S +IL+ F++ DPT K TQYRS + + +P +K V
Sbjct: 53 HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAA 112
Query: 72 SLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
+L E+ K++ P+ P K FYDAEE+
Sbjct: 113 ALKREQQKYQLPLVVENEPLKNFYDAEEY 141
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
pdb|3PIL|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 184
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 17 DHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRS-MILHVNPEDKEVA 69
D EV QV ++P VI+ +E+ F++ HDPT TQYRS + H + + KE+A
Sbjct: 73 DFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELA 132
Query: 70 EKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
K E + K I T++ P K FYDAEE+
Sbjct: 133 -KIKEEWQPKWGNKIATVIEPIKNFYDAEEY 162
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 183
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 17 DHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRS-MILHVNPEDKEVA 69
D EV QV ++P VI+ +E+ F++ HDPT TQYRS + H + + KE+A
Sbjct: 72 DFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELA 131
Query: 70 EKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
K E + K I T++ P K FYDAEE+
Sbjct: 132 -KIKEEWQPKWGNKIATVIEPIKNFYDAEEY 161
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|C Chain C, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
Length = 187
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 17 DHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRS-MILHVNPEDKEVA 69
D EV QV ++P VI+ +E+ F++ HDPT TQYRS + H + + KE+A
Sbjct: 76 DFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELA 135
Query: 70 EKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
K E + K I T++ P K FYDAEE+
Sbjct: 136 -KIKEEWQPKWGNKIATVIEPIKNFYDAEEY 165
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra
Length = 212
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 11/101 (10%)
Query: 10 ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
+C+ +G H EV +V + P IS++E+L++FW++HDPT M+ TQYRS + +
Sbjct: 85 VCSEKTG-HAEVVRVVYRPEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSA 143
Query: 64 EDKEVAEKSLAEEK---TKHR-KPITTLVVPFKRFYDAEEW 100
E A +S E + +KH PITT + + FY AE++
Sbjct: 144 VQMEAALRSKEEYQKVLSKHNFGPITTDIREGQVFYYAEDY 184
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine
Sulfoxide Reductase A In Complex With Protein-Bound
Methionine
Length = 203
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 16 GDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPEDKEVA 69
G H E ++ FDP+V Y+ +L F++ HDPT + + T YRS I + + + K +A
Sbjct: 69 GTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIA 128
Query: 70 EKSLAEEKTKHRKP--ITTLVVPFKRFYDAE 98
++A+ + P + T V P F++AE
Sbjct: 129 LDTIADVEASGLWPGKVVTEVSPAGDFWEAE 159
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
pdb|1FVA|B Chain B, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
Length = 217
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 10 ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
+C+ +G H EV +V F P IS++E+L++FW++HDPT M+ +QYRS I +
Sbjct: 94 VCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSA 152
Query: 64 E-------DKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
E KE +K L+E ITT + + FY AE++
Sbjct: 153 EHVGAALKSKEDYQKVLSEHGFGL---ITTDIREGQTFYYAEDY 193
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide
Reductase
Length = 199
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 10 ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
+C+ +G H EV +V F P IS++E+L++FW++HDPT + +QYRS I +
Sbjct: 86 VCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGXRQGNDHGSQYRSAIYPTSA 144
Query: 64 E-------DKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
E KE +K L+E ITT + + FY AE++
Sbjct: 145 EHVGAALKSKEDYQKVLSEHGFGL---ITTDIREGQTFYYAEDY 185
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 17 DHTEVTQVDFDPSVISYKEILRIFWKHHDP-TVQMKT-----QYRSMILHVNPEDKEVAE 70
DH E QV +D +S +EIL +++ DP ++ + QYR+ I + + D
Sbjct: 49 DHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIY 108
Query: 71 KSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
+ E++ + I V + + AE++
Sbjct: 109 TVVQEQERMLGRKIAVEVEQLRHYILAEDY 138
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 83 PITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQ---VE 139
P T +P + D EEW RR R + + L+ RS + R A VE
Sbjct: 784 PRVTARMPLEGLLDVEEWRRRQEKRLKELLA-----LAERSQRKLASPGFREKAPKEVVE 838
Query: 140 LQERRLLQNL 149
+E RL +NL
Sbjct: 839 AEEARLKENL 848
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%)
Query: 153 GTPERLCRGLNNRLLFSLHSYHQKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVG 212
TPE++ L N L + L H + Q EL P F+SE S + + G
Sbjct: 27 ATPEQISXDLKNELXYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATG 86
Query: 213 FGGIKQ 218
G Q
Sbjct: 87 CGKTTQ 92
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 175 QKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFG 214
Q++ LR QP LN+++EDC K + +A GY + G
Sbjct: 171 QEFYLRLFCSTQPDLNWENEDCRKAIYESAV--GYWLDHG 208
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 175 QKYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYVVGFG 214
Q++ LR QP LN+++EDC K + +A GY + G
Sbjct: 171 QEFYLRLFCSTQPDLNWENEDCRKAIYESAV--GYWLDHG 208
>pdb|2DKK|A Chain A, Structure/function Studies Of Cytochrome P450 158a1 From
Streptomyces Coelicolor A3(2)
Length = 411
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 101 PRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQERRLLQNLP 150
P R+ L R +P+PHL+Y + + A Q EL LL+ LP
Sbjct: 334 PDRIDLDR-----DPNPHLAYGNGHHFCTGAVLARMQTELLVDTLLERLP 378
>pdb|2NZ5|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZ5|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
Length = 413
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 101 PRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQERRLLQNLP 150
P R+ L R +P+PHL+Y + + A Q EL LL+ LP
Sbjct: 334 PDRIDLDR-----DPNPHLAYGNGHHFCTGAVLARMQTELLVDTLLERLP 378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,567,232
Number of Sequences: 62578
Number of extensions: 298419
Number of successful extensions: 677
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 28
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)