Query psy9119
Match_columns 250
No_of_seqs 171 out of 1254
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 19:23:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bqh_A PILB, peptide methionin 100.0 1.5E-44 5.2E-49 314.2 11.7 120 3-127 38-163 (193)
2 3e0m_A Peptide methionine sulf 100.0 2.5E-44 8.5E-49 331.5 13.4 134 3-143 38-191 (313)
3 3pim_A Peptide methionine sulf 100.0 1.1E-43 3.7E-48 307.7 9.1 110 4-118 64-179 (187)
4 1ff3_A Peptide methionine sulf 100.0 2.3E-43 8E-48 310.3 10.3 114 3-121 78-202 (211)
5 1fvg_A Peptide methionine sulf 100.0 4.4E-43 1.5E-47 306.3 9.6 111 3-118 79-199 (199)
6 2j89_A Methionine sulfoxide re 100.0 4.2E-42 1.4E-46 309.8 11.0 116 3-122 130-258 (261)
7 4gwb_A Peptide methionine sulf 100.0 1.1E-41 3.7E-46 290.9 12.8 114 3-124 38-159 (168)
8 1nwa_A Peptide methionine sulf 100.0 1E-40 3.6E-45 292.1 12.8 125 3-136 61-201 (203)
9 3hcg_A Peptide methionine sulf 60.9 4.4 0.00015 33.8 2.4 22 122-143 3-25 (146)
10 2l08_A Regulator of nonsense t 54.6 5.1 0.00017 31.2 1.7 64 145-210 13-77 (97)
11 1uw4_A UPF3X; nonsense mediate 50.3 3.7 0.00013 31.3 0.3 64 145-210 5-69 (91)
12 2a7o_A Huntingtin interacting 46.0 33 0.0011 27.5 5.2 46 188-243 43-95 (112)
13 3e0o_A Peptide methionine sulf 40.0 9.2 0.00032 31.8 1.1 18 126-143 7-24 (144)
14 3cxk_A Methionine-R-sulfoxide 33.0 21 0.00071 30.3 2.2 19 125-143 37-55 (164)
15 2k9m_A RNA polymerase sigma fa 32.8 49 0.0017 26.3 4.3 32 218-249 41-72 (130)
16 2l1u_A MSRB2, methionine-R-sul 30.4 13 0.00045 30.8 0.5 17 127-143 3-19 (143)
17 2k8d_A Peptide methionine sulf 28.5 17 0.00057 30.5 0.9 19 125-143 25-43 (151)
18 3dxs_X Copper-transporting ATP 26.8 51 0.0018 21.5 3.0 22 19-40 39-60 (74)
19 2kz5_A Transcription factor NF 26.7 81 0.0028 24.4 4.4 28 215-242 44-71 (91)
20 2k9l_A RNA polymerase sigma fa 26.1 54 0.0018 23.4 3.2 47 191-242 26-74 (76)
21 2lz1_A Nuclear factor erythroi 25.6 87 0.003 24.2 4.3 30 215-244 44-73 (90)
22 2dbf_A Nuclear factor NF-kappa 24.5 76 0.0026 24.3 3.9 63 184-247 35-100 (100)
23 3c1d_A Protein ORAA, regulator 22.6 1.6E+02 0.0056 23.3 5.8 46 187-236 57-102 (159)
24 1skn_P DNA-binding domain of S 21.4 1.2E+02 0.004 23.6 4.3 28 215-242 40-67 (92)
25 1zrj_A E1B-55KDA-associated pr 20.2 91 0.0031 21.3 3.2 32 215-247 14-50 (50)
No 1
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=100.00 E-value=1.5e-44 Score=314.21 Aligned_cols=120 Identities=30% Similarity=0.463 Sum_probs=109.6
Q ss_pred CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119 3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE 76 (250)
Q Consensus 3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~ 76 (250)
+-|||++||+|.+| |+|||+|+|||++|||++||++||++||||+. .|+||||+|||+|++|+++|+++++++
T Consensus 38 ~nPtY~~Vc~g~tG-HaEaV~V~yDp~~isy~~LL~~f~~~hDPT~~nrQG~D~G~QYRS~If~~~~~Q~~~A~~~~~~~ 116 (193)
T 3bqh_A 38 KNPSYEDVSYRHTG-HAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKRE 116 (193)
T ss_dssp SSCCHHHHHHSCCC-CEEEEEEEEETTTCCHHHHHHHHHHHSCCBGGGSSSCCTTCTTCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCChheeecCCCC-CeEEEEEEECCCcCCHHHHHHHHHHhcCCCCCCCCCCCcCccceeeeecCCHHHHHHHHHHHHHH
Confidence 56999999999875 99999999999999999999999999999985 579999999999999999999999999
Q ss_pred HhhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCccccccchh
Q psy9119 77 KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSM 127 (250)
Q Consensus 77 q~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~~~dd~ 127 (250)
+++++++|+|||+|+.+||+||+|||+||.| ||++|||++.++.++.
T Consensus 117 ~~~~~~~IvTeI~p~~~Fy~AE~yHQ~Yl~k----np~~Yc~~~~~~~~~~ 163 (193)
T 3bqh_A 117 QQKYQLPLVVENEPLKNFYDAEEYHQDYLIK----NPNGYCHIDIRKADEP 163 (193)
T ss_dssp HTTCSSCBCCEEEECCCEEECCGGGTTHHHH----CTTCCC---CCTTTSC
T ss_pred HHHhCCCeEEEEecCCCeeEcHHHHHHHHHh----CCCCceeeecchhhhh
Confidence 9988999999999999999999999999999 6789999988776543
No 2
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.5e-44 Score=331.48 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=124.7
Q ss_pred CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCCC------CCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119 3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQM------KTQYRSMILHVNPEDKEVAEKSLAEE 76 (250)
Q Consensus 3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~~------g~QYRSaIfy~deeQr~~Ae~s~~~~ 76 (250)
+-|||++|| .+ ||+|||+|+|||++|||++||++||++||||+.+ |+||||+|||+|++|+++|+++++++
T Consensus 38 ~nPtY~~Vc--~T-GHaEaV~V~yDp~~isy~~LL~~f~~~hDPT~~nrQG~D~G~QYRS~Ify~~~~Q~~~a~~~~~~~ 114 (313)
T 3e0m_A 38 ETTNYQLLK--ET-DHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQ 114 (313)
T ss_dssp SCCCTTTHH--HH-TCEEEEEEEECTTTSCHHHHHHHHHHHSCTTCSSEETTEESGGGCCEEEESCGGGHHHHHHHHHHH
T ss_pred CCCChhhhc--cC-CCeEEEEEEECCCcCCHHHHHHHHHhhcCCCcCCCcCCCCccccceeEecCCHHHHHHHHHHHHHH
Confidence 569999999 44 5999999999999999999999999999999874 79999999999999999999999999
Q ss_pred HhhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCcc-------------ccccchh-HHHhhhHHHHHHHHH
Q psy9119 77 KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLS-------------YRSHDSM-TRKTLRASAQVELQE 142 (250)
Q Consensus 77 q~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~-------------~~~~dd~-lk~~l~~~~~~~~~~ 142 (250)
+++++++|+|||+|+.+||+||+|||+||.| ||++|||++ |.+++|+ +|++||++|+.+|++
T Consensus 115 ~~~~~~~IvTeI~p~~~Fy~AE~yHQ~Yl~k----nP~~Yc~~~~~~~~~~~~~~~~Y~~~~~~ew~~~Lt~~qy~V~r~ 190 (313)
T 3e0m_A 115 ERMLGRKIAVEVEQLRHYILAEDYHQDYLRK----NPSGYCHIDVTDADKPLIDAANYEKPSQEVLKASLSEESYRVTQE 190 (313)
T ss_dssp HHHHSSCCCCEEEECCCEEECCGGGTTHHHH----STTCCCCSCGGGGTSCCCCGGGGCCCCHHHHHHHSCHHHHHHHHH
T ss_pred HHhcCCCeEEEEeeccceeEcHHHHHHHHHH----CCCcceeeecccchhhhhcccccccCCHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999999999999999999 678999994 4456666 999999999999998
Q ss_pred H
Q psy9119 143 R 143 (250)
Q Consensus 143 ~ 143 (250)
.
T Consensus 191 ~ 191 (313)
T 3e0m_A 191 A 191 (313)
T ss_dssp C
T ss_pred c
Confidence 6
No 3
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=100.00 E-value=1.1e-43 Score=307.67 Aligned_cols=110 Identities=30% Similarity=0.433 Sum_probs=101.7
Q ss_pred CCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHHH
Q psy9119 4 ISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEEK 77 (250)
Q Consensus 4 ~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~q 77 (250)
.|||++||+|.+| |+|||+|+|||++|||++||++||++||||+. +|+||||+|||+|++|+++|++++++++
T Consensus 64 ~PtY~~Vc~g~TG-HaEaV~V~yDp~~isy~~LL~~Ff~~hDPT~~nrQG~D~G~QYRS~Ify~~~~Q~~~A~~~~~~l~ 142 (187)
T 3pim_A 64 SVSYKRVCGGDTD-FAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQ 142 (187)
T ss_dssp ---CSCBTTBCTT-CEEEEEEEECTTTSCHHHHHHHHTTSSCCBTTCC-----CGGGCCEEEESSHHHHHHHHHHHHHHG
T ss_pred CCchhhhccCCCC-CeEEEEEEECCccCCHHHHHHHHHHhcCCCcCCCCCCCcCcccceeeEeCCHHHHHHHHHHHHHHH
Confidence 4999999999875 99999999999999999999999999999986 4799999999999999999999999999
Q ss_pred hhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCC
Q psy9119 78 TKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPH 118 (250)
Q Consensus 78 ~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yCh 118 (250)
++++++|+|||+|+.+||+||||||+||.| ||++||-
T Consensus 143 ~~~~~~IvTeI~p~~~Fy~AE~yHQ~Yl~k----nP~~Ycc 179 (187)
T 3pim_A 143 PKWGNKIATVIEPIKNFYDAEEYHQLYLDK----NPQGYAC 179 (187)
T ss_dssp GGGTTCBCCEEEEEEEEEEHHHHHHHHCTT----CTTCTTC
T ss_pred HHhCCCcEEEEeeCCCeeecHHHHHHHHHH----CCCCCCC
Confidence 999999999999999999999999999999 6778873
No 4
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=100.00 E-value=2.3e-43 Score=310.28 Aligned_cols=114 Identities=32% Similarity=0.492 Sum_probs=105.8
Q ss_pred CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119 3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE 76 (250)
Q Consensus 3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~ 76 (250)
+-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+. .|+||||+|||+|++|+++|+++++++
T Consensus 78 ~nPtY~~VcsG~TG-HaEaV~V~yDp~~isy~~LL~~F~~~hDPT~~nrQG~D~GtQYRSaIf~~~~eQ~~~A~~~~~~~ 156 (211)
T 1ff3_A 78 PNPTYREVCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERF 156 (211)
T ss_dssp SSCCHHHHHHTCSC-CEEEEEEEECTTTSCHHHHHHHHHHSSCTTSSSEETTEESGGGCCEECCSSHHHHHHHHHHHHHH
T ss_pred CCCChhhccCCCCC-ceEEEEEEECCCcCCHHHHHHHHHHhcCCcccCCCCCCcCccceeeeecCCHHHHHHHHHHHHHH
Confidence 56999999999875 99999999999999999999999999999986 379999999999999999999999988
Q ss_pred Hhh-----CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCccc
Q psy9119 77 KTK-----HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSY 121 (250)
Q Consensus 77 q~k-----~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~ 121 (250)
+++ ++++|+|||+|+.+||+||||||+||.| ||++|||++-
T Consensus 157 q~~l~~~g~~~~IvTeI~p~~~Fy~AE~YHQ~Yl~k----nP~~Yc~~~~ 202 (211)
T 1ff3_A 157 QAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK----NPYGYCGIGG 202 (211)
T ss_dssp HHHHHHTTCCCCCCCEECCCCCEEECCGGGTTHHHH----SCCCCCCCCC
T ss_pred HHHHhhcccCCceEEEEeeCCCceeChHHHHHHHHH----CCCCCcCcCC
Confidence 775 3568999999999999999999999999 6789999853
No 5
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=100.00 E-value=4.4e-43 Score=306.30 Aligned_cols=111 Identities=31% Similarity=0.444 Sum_probs=102.7
Q ss_pred CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119 3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE 76 (250)
Q Consensus 3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~ 76 (250)
+-|||++||+|.+| |+|+|+|+|||++|||++||++||++||||+. .|+||||+|||+|++|+++|+++++++
T Consensus 79 ~nPtY~~Vcsg~TG-HaEaV~V~yDp~~isy~~LL~~F~~~hDPT~~nrQG~D~G~QYRS~If~~~~~Q~~~A~~~~~~~ 157 (199)
T 1fvg_A 79 PNPTYKEVCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDY 157 (199)
T ss_dssp SSCCHHHHHHTCSC-CEEEEEEEECTTTSCHHHHHHHHHHTSCTTCSSEETTEESGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCChhheecCCCC-CeEEEEEEECCCcCCHHHHHHHHHHhcCCcccCCCCCCCChhheeccccCCHHHHHHHHHHHHHH
Confidence 56999999999875 99999999999999999999999999999986 379999999999999999999999998
Q ss_pred HhhCC----CCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCC
Q psy9119 77 KTKHR----KPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPH 118 (250)
Q Consensus 77 q~k~~----~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yCh 118 (250)
++++. ++|+|||+|+.+||+||||||+||.| ||++|||
T Consensus 158 q~~~~~~g~~~IvTeI~p~~~Fy~AE~yHQ~Yl~k----nP~~Yc~ 199 (199)
T 1fvg_A 158 QKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSK----DPDGYCG 199 (199)
T ss_dssp HHHHHHTTCCCCCCEECSSCCCEECCGGGTTHHHH----STTCCC-
T ss_pred HHHHhhcCCCCeEEEEeeCCCeeECHHHHHHHHHh----CCCCCCC
Confidence 87542 58999999999999999999999999 6789997
No 6
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}
Probab=100.00 E-value=4.2e-42 Score=309.80 Aligned_cols=116 Identities=30% Similarity=0.494 Sum_probs=108.3
Q ss_pred CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119 3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE 76 (250)
Q Consensus 3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~ 76 (250)
+-|||++||+|.+| |+|||+|+|||++|||++||++||++||||+. .|+||||+|||+|++|+++|+++++++
T Consensus 130 ~nPTYeeVcsG~TG-HaEaV~V~YDP~~ISy~~LL~~Fw~~hDPT~~nrQG~D~GtQYRSaIfy~~eeQ~~~Ae~s~~~~ 208 (261)
T 2j89_A 130 HNPTYEDVCTGTTN-HNEVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQ 208 (261)
T ss_dssp SSCCHHHHHTTCSC-CEEEEEEEECTTTSCHHHHHHHHHHHSCTTSTTEETTEESGGGCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCChhhcccCCCC-CeEEEEEEECCCcCCHHHHHHHHHHhcCCcccCCCCCCCCccccccccCCCHHHHHHHHHHHHHH
Confidence 56999999999875 99999999999999999999999999999986 479999999999999999999999999
Q ss_pred HhhCCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCC-------CCcccc
Q psy9119 77 KTKHRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPS-------PHLSYR 122 (250)
Q Consensus 77 q~k~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~y-------Chi~~~ 122 (250)
+++++++|+|||+|+.+||+||||||+||.|+ +..|| ||++++
T Consensus 209 q~~~~~~IvTEI~p~~~Fy~AEdYHQ~Yl~Kn---~~~gy~qsa~kgC~~~ir 258 (261)
T 2j89_A 209 QKLLNRKIVTEILPAKKFYRAEEYHQQYLAKG---GRFGFMQSAEKGCNDPIR 258 (261)
T ss_dssp HTTCSSCCCCEEEECCCEEECCGGGTTTTTTT---TTTSCCCCCCTTCCSCCC
T ss_pred HHhcCCCcEEEEecCCCeeECHHHHHHHHHHC---CCCCCcccccccCCCchh
Confidence 99888999999999999999999999999995 44567 999864
No 7
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.1e-41 Score=290.88 Aligned_cols=114 Identities=30% Similarity=0.451 Sum_probs=102.6
Q ss_pred CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119 3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE 76 (250)
Q Consensus 3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~ 76 (250)
+-|||++|| +|+|+|+|+|||++|||++||++||++||||+. .|+||||+|||+|++|+++|+++++++
T Consensus 38 ~nPtY~~v~-----~HaE~V~V~yDp~~isy~~LL~~F~~~hDPT~~nrQg~D~G~QYRS~If~~~~~Q~~~a~~~~~~l 112 (168)
T 4gwb_A 38 PNATYRNHG-----THAEGIEIIFDPERISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADV 112 (168)
T ss_dssp TTCBTTBCT-----TCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTTEETTEESGGGCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCcccccC-----ceEEEEEEEECCCCCCHHHHHHHHHhhcCCcCcCCCCCCCCcCceEEEecCCHHHHHHHHHHHHHH
Confidence 569999998 399999999999999999999999999999986 479999999999999999999999998
Q ss_pred Hhh--CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCCCCcccccc
Q psy9119 77 KTK--HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSH 124 (250)
Q Consensus 77 q~k--~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~yChi~~~~~ 124 (250)
++. +.++|+|||+|+.+||+||+|||+||.|+ |.+++|||..++.
T Consensus 113 ~~~~~~~~~IvTei~p~~~Fy~AE~yHQ~Yl~kn---P~~y~Ch~~~~~~ 159 (168)
T 4gwb_A 113 EASGLWPGKVVTEVEPVRDFWEAEPEHQNYLERY---PNGYTCHFPRPNW 159 (168)
T ss_dssp HHHTCSSSCCCCEEEECCCEEECCGGGTTHHHHS---TTSCCCCCCCTTS
T ss_pred HHcccCCCCEEEEEEecCCeeECHHHHHHHHHhC---CCCCccCcCCccc
Confidence 765 46799999999999999999999999994 4445599975543
No 8
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=100.00 E-value=1e-40 Score=292.10 Aligned_cols=125 Identities=26% Similarity=0.390 Sum_probs=102.6
Q ss_pred CCCCcccccccccCCeeEEEEEEEcCCCCCHHHHHHHHHhhCCCCCC------CCCCcceEEeeCCHhhHHHHHHHHHHH
Q psy9119 3 VISEHRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVNPEDKEVAEKSLAEE 76 (250)
Q Consensus 3 ~~~tYe~VCsG~~GDHtEaVeV~YDP~vISYeeLLdiFw~~HDPT~~------~g~QYRSaIfy~deeQr~~Ae~s~~~~ 76 (250)
+-|||++ +| +|+|||+|+|||++|||++||++||++||||+. +|+||||+|||+|++|+++|+++++++
T Consensus 61 ~nPtYe~--~G---~HaEaV~V~yDp~~iSy~~LL~~Ff~~hDPT~~nrQG~D~GtQYRSaIfy~~~eQ~~~A~~~~~~l 135 (203)
T 1nwa_A 61 PNATYRN--HG---THAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADV 135 (203)
T ss_dssp SSCCSSC--CT---TCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTTEETTEESGGGCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCChhh--cC---CceEEEEEEECCCcCCHHHHHHHHHHhcCCcccCCCCCCCCccccccccCCCHHHHHHHHHHHHHH
Confidence 5699999 55 399999999999999999999999999999986 479999999999999999999999999
Q ss_pred Hhh--CCCCcEEEeecCcCceeCcccchhHHhhhhcCCCCCC-CCcccc------ccchh-HHHhhhHHH
Q psy9119 77 KTK--HRKPITTLVVPFKRFYDAEEWPRRVSLRRRRNIGNPS-PHLSYR------SHDSM-TRKTLRASA 136 (250)
Q Consensus 77 q~k--~~~~I~TEIepl~~FYpAEdYHQ~YL~K~~~~~p~~y-Chi~~~------~~dd~-lk~~l~~~~ 136 (250)
++. ++++|+|||+|+.+||+||+|||+||.| ||++| ||+..+ +.++- ||+.|||+.
T Consensus 136 q~~g~~~~~IvTeI~p~~~Fy~AE~YHQ~Yl~k----nP~~Y~c~~~~~~~~k~~~~a~~~~~~~~~~~~ 201 (203)
T 1nwa_A 136 EASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR----YPNGYTCHFVRPGWRLPRRTAESALRASLSPEL 201 (203)
T ss_dssp HHHCCSSSCCCCEEEECCCEEECCGGGTTHHHH----STTSCCCCCCCTTSCCSCC--------------
T ss_pred HHhcCcCCCeEEEEecCCCEEEChHHHHHHHHh----CCCCCcccccHHHHHhhhhhhhhhhhhhcCccc
Confidence 986 6789999999999999999999999999 67788 998443 22222 777777753
No 9
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=60.91 E-value=4.4 Score=33.80 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=18.9
Q ss_pred cccchh-HHHhhhHHHHHHHHHH
Q psy9119 122 RSHDSM-TRKTLRASAQVELQER 143 (250)
Q Consensus 122 ~~~dd~-lk~~l~~~~~~~~~~~ 143 (250)
.+++|+ +|++||++|+.+|++.
T Consensus 3 ~~~s~~ewr~~Ltp~qy~V~r~~ 25 (146)
T 3hcg_A 3 KKPSDAELKRTLTEEQYQVTQNS 25 (146)
T ss_dssp CCCCHHHHHHHSBHHHHHHHHHC
T ss_pred CCCCHHHHHhhCCHHHHHHHHHc
Confidence 455666 9999999999999986
No 10
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=54.59 E-value=5.1 Score=31.17 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=39.4
Q ss_pred HhhcCCCCCCcchhhcccccccccccccccc-cchhccccccccccCCCChhhhhhhhHHHHHhccc
Q psy9119 145 LLQNLPPSGTPERLCRGLNNRLLFSLHSYHQ-KYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYV 210 (250)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hq-k~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~n~~~ 210 (250)
++.+|||+-|-|.++.-|..-.-....+|.+ |+.+..+.--..=++|++.|.+. .++.+.+||+
T Consensus 13 VIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~--~F~~~f~g~~ 77 (97)
T 2l08_A 13 VIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL--LFRDRFDGYI 77 (97)
T ss_dssp EEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHH--HHHHHSTTEE
T ss_pred EEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHH--HHHHHcCCcE
Confidence 4678999999999999998743322223322 22222222222346677766553 5788888886
No 11
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=50.31 E-value=3.7 Score=31.25 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=39.8
Q ss_pred HhhcCCCCCCcchhhcccccccccccccccc-cchhccccccccccCCCChhhhhhhhHHHHHhccc
Q psy9119 145 LLQNLPPSGTPERLCRGLNNRLLFSLHSYHQ-KYRLRQHSELQPKLNFKSEDCYKTSHLAARLNGYV 210 (250)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hq-k~~l~~~~~~~~~~~~~~~~~~~~s~~~~~~n~~~ 210 (250)
++.+|||+-|-|.+..-|..-.-....+|++ |..++.+.--.--++|++.+.. -.++.+++|++
T Consensus 5 VIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v--~~f~~~~~g~~ 69 (91)
T 1uw4_A 5 VIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDI--ILFRDRFDGYV 69 (91)
T ss_dssp EEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHH--HHHHHHHTTCE
T ss_pred EEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHH--HHHHHHhCCcE
Confidence 3568999999999998887654333344433 3333322223334667776544 45788899886
No 12
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=46.05 E-value=33 Score=27.50 Aligned_cols=46 Identities=33% Similarity=0.582 Sum_probs=33.0
Q ss_pred ccC-CCChhhhhhhhHHHHHhccccccCChhhHHHHHHh------cCCCHHHHHHHHHHHHhh
Q psy9119 188 KLN-FKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQ------LGLSEDVKNYVRKYVKRY 243 (250)
Q Consensus 188 ~~~-~~~~~~~~~s~~~~~~n~~~~g~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~ 243 (250)
++| +.|.++|+ |||-+|--.|. ++|+.. |-+++.|+...++||.+|
T Consensus 43 k~GRITs~EDFK--~LaRKLTh~V~--------~KElk~~~~~~~L~~tesVK~Ka~~fi~kY 95 (112)
T 2a7o_A 43 KVGRITTTEDFK--HLARKLTHGVM--------NKELKYCKNPEDLECNENVKHKTKEYIKKY 95 (112)
T ss_dssp SSSBCCCHHHHH--HHHHHHHHHHH--------HHHHHHHCCGGGCSCCHHHHHHHHHHHHHH
T ss_pred ccCccccHHHHH--HHHHHHHHHHH--------HHHHHhcCCCcceeechhhHHHHHHHHHHH
Confidence 455 77788886 89999986665 566666 888898876666665554
No 13
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=39.96 E-value=9.2 Score=31.84 Aligned_cols=18 Identities=17% Similarity=-0.001 Sum_probs=16.0
Q ss_pred hhHHHhhhHHHHHHHHHH
Q psy9119 126 SMTRKTLRASAQVELQER 143 (250)
Q Consensus 126 d~lk~~l~~~~~~~~~~~ 143 (250)
+.+|++||++|+.+|++.
T Consensus 7 ~ew~~~Ltp~qy~V~r~~ 24 (144)
T 3e0o_A 7 EEKIKSLNRMQYEVTQNN 24 (144)
T ss_dssp HHHHHHSCHHHHHHHHHC
T ss_pred HHHHhhCCHHHHHHHHhc
Confidence 349999999999999986
No 14
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=33.01 E-value=21 Score=30.32 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=16.4
Q ss_pred chhHHHhhhHHHHHHHHHH
Q psy9119 125 DSMTRKTLRASAQVELQER 143 (250)
Q Consensus 125 dd~lk~~l~~~~~~~~~~~ 143 (250)
|+.+|++||++|+.+|++.
T Consensus 37 ~~ewr~~Ltp~qy~V~r~~ 55 (164)
T 3cxk_A 37 DAELRRRLTPMQYEVTQHA 55 (164)
T ss_dssp HHHHHHHSCHHHHHHHHHC
T ss_pred HHHHHhhCCHHHHHHHHhc
Confidence 3449999999999999985
No 15
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=32.78 E-value=49 Score=26.27 Aligned_cols=32 Identities=34% Similarity=0.305 Sum_probs=27.5
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhCCCCcc
Q psy9119 218 QFEEEADQLGLSEDVKNYVRKYVKRYEGSGMM 249 (250)
Q Consensus 218 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (250)
.+++-++.+|++++..+.|++.|..-+-.|+.
T Consensus 41 ~l~eia~~l~~~~~eve~vL~~iQ~~dP~GVg 72 (130)
T 2k9m_A 41 SVEEISDVLRCSVEELEKVRQKVLRLEPLGVC 72 (130)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTSSSCCTT
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHhcCCCCccc
Confidence 46677788999999999999999998888764
No 16
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=30.37 E-value=13 Score=30.84 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=15.4
Q ss_pred hHHHhhhHHHHHHHHHH
Q psy9119 127 MTRKTLRASAQVELQER 143 (250)
Q Consensus 127 ~lk~~l~~~~~~~~~~~ 143 (250)
.+|++||++|+.+||+.
T Consensus 3 ewr~~Ltp~qy~V~r~~ 19 (143)
T 2l1u_A 3 DWQKKLTPEQFYVTREK 19 (143)
T ss_dssp CSHHHHSCSHHHHHHHT
T ss_pred HHHhhCCHHHHHHHHhc
Confidence 47999999999999986
No 17
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.49 E-value=17 Score=30.48 Aligned_cols=19 Identities=21% Similarity=0.108 Sum_probs=16.6
Q ss_pred chhHHHhhhHHHHHHHHHH
Q psy9119 125 DSMTRKTLRASAQVELQER 143 (250)
Q Consensus 125 dd~lk~~l~~~~~~~~~~~ 143 (250)
|+.+|++||++|+.+|++.
T Consensus 25 ~~ewr~~Ltp~qy~V~r~~ 43 (151)
T 2k8d_A 25 DDEWREILDPEAFRVARKA 43 (151)
T ss_dssp TTGGGTTSCTTHHHHHHHT
T ss_pred HHHHHhhCCHHHHHHHHhc
Confidence 4449999999999999986
No 18
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=26.80 E-value=51 Score=21.45 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=18.6
Q ss_pred eEEEEEEEcCCCCCHHHHHHHH
Q psy9119 19 TEVTQVDFDPSVISYKEILRIF 40 (250)
Q Consensus 19 tEaVeV~YDP~vISYeeLLdiF 40 (250)
+..+.|.|||..++.++|....
T Consensus 39 ~~~~~v~~~~~~~~~~~i~~~i 60 (74)
T 3dxs_X 39 QNRADVVFDPNLVKEEDIKEEI 60 (74)
T ss_dssp GTEEEEEECTTTCCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4678899999999999988765
No 19
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=26.67 E-value=81 Score=24.44 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.0
Q ss_pred ChhhHHHHHHhcCCCHHHHHHHHHHHHh
Q psy9119 215 GIKQFEEEADQLGLSEDVKNYVRKYVKR 242 (250)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (250)
+.++|.+-++..+||+++...||++=+|
T Consensus 44 pv~efn~ll~~~~Ls~~Ql~lIrdiRRR 71 (91)
T 2kz5_A 44 PVDDFNELLARYPLTESQLALVRDIRRR 71 (91)
T ss_dssp CHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999987665
No 20
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=26.08 E-value=54 Score=23.43 Aligned_cols=47 Identities=26% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCChhhhhhhhHHHHH--hccccccCChhhHHHHHHhcCCCHHHHHHHHHHHHh
Q psy9119 191 FKSEDCYKTSHLAARL--NGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKR 242 (250)
Q Consensus 191 ~~~~~~~~~s~~~~~~--n~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (250)
++..+.-.-..+.--| |||+.. .+++-++.||++++....|++.|..
T Consensus 26 ~~~~~~~Ia~~iI~~LD~~GYL~~-----~l~eia~~l~~~~~eve~vL~~lQ~ 74 (76)
T 2k9l_A 26 LEGKEQELALELLNYLNEKGFLSK-----SVEEISDVLRCSVEELEKVRQKVLR 74 (76)
T ss_dssp CCTTSHHHHHHHHHHCTTSSTTCC-----CHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4444433344444444 466652 4566677889999999999988865
No 21
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.56 E-value=87 Score=24.23 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.2
Q ss_pred ChhhHHHHHHhcCCCHHHHHHHHHHHHhhC
Q psy9119 215 GIKQFEEEADQLGLSEDVKNYVRKYVKRYE 244 (250)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (250)
..++|.+-++..+||+++...|+++=.|..
T Consensus 44 pv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgK 73 (90)
T 2lz1_A 44 PVVDFNEMMSKEQFNEAQLALIRDIRRRGK 73 (90)
T ss_dssp CHHHHHHHHHHSCCCHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Confidence 468999999999999999999999877643
No 22
>2dbf_A Nuclear factor NF-kappa-B P105 subunit; apoptosis, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.48 E-value=76 Score=24.34 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=46.6
Q ss_pred ccccccCCCCh-hhh--hhhhHHHHHhccccccCChhhHHHHHHhcCCCHHHHHHHHHHHHhhCCCC
Q psy9119 184 ELQPKLNFKSE-DCY--KTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYVRKYVKRYEGSG 247 (250)
Q Consensus 184 ~~~~~~~~~~~-~~~--~~s~~~~~~n~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 247 (250)
.|.++|++.+- ..| ..|+-+.-|+-|-+.-|++.++.+-+..+|.. |+...++.++.+...+|
T Consensus 35 ~LAe~Lg~~~li~~f~~~~SPt~~LL~~we~~~~tv~~L~~~L~~mgr~-dav~~L~~~~~~~~~~~ 100 (100)
T 2dbf_A 35 TLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGTVRELVEALRQMGYT-EAIEVIQAASSSGPSSG 100 (100)
T ss_dssp HHHHHHTCGGGHHHHHHSSCHHHHHHHHHHHTCCCHHHHHHHHHHHTCS-HHHHHHHHHHCSSSCCC
T ss_pred HHHHHHCcHHHHHHHhcCCChHHHHHHHHHhCCCCHHHHHHHHHHhCcH-HHHHHHHHHHhcCCCCC
Confidence 46677776542 111 23777888998877889999999999999998 46678888877766555
No 23
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.63 E-value=1.6e+02 Score=23.34 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=37.6
Q ss_pred cccCCCChhhhhhhhHHHHHhccccccCChhhHHHHHHhcCCCHHHHHHH
Q psy9119 187 PKLNFKSEDCYKTSHLAARLNGYVVGFGGIKQFEEEADQLGLSEDVKNYV 236 (250)
Q Consensus 187 ~~~~~~~~~~~~~s~~~~~~n~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 236 (250)
...|+-++..|..+-+..+++ .|+| ...+..|+.+=|++++..+.+
T Consensus 57 ~~~g~ldD~rfA~~~v~~~~~---~g~G-~~~I~~eL~~KGI~~~~i~~a 102 (159)
T 3c1d_A 57 HEHGYLDDSRFVARFIASRSR---KGYG-PARIRQELNQKGISREATEKA 102 (159)
T ss_dssp HHTTSCCHHHHHHHHHHHHHH---TTCC-HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHcCCcCHHHHHHHHHHHHHh---CCcc-HHHHHHHHHHcCCCHHHHHHH
Confidence 456888888999999998887 4654 778999999999999887643
No 24
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=21.35 E-value=1.2e+02 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=24.3
Q ss_pred ChhhHHHHHHhcCCCHHHHHHHHHHHHh
Q psy9119 215 GIKQFEEEADQLGLSEDVKNYVRKYVKR 242 (250)
Q Consensus 215 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 242 (250)
+.++|.+-++..|||+++...+++.=+|
T Consensus 40 pv~efn~lLk~~~Ls~~Ql~~ir~~RRR 67 (92)
T 1skn_P 40 SLSELQQVLKNESLSEYQRQLIRKIRRR 67 (92)
T ss_dssp CHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999887554
No 25
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.21 E-value=91 Score=21.30 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=23.3
Q ss_pred ChhhHHHHHHhcCCCH-----HHHHHHHHHHHhhCCCC
Q psy9119 215 GIKQFEEEADQLGLSE-----DVKNYVRKYVKRYEGSG 247 (250)
Q Consensus 215 ~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~ 247 (250)
.+.++++|+..-||+. +..+.|..++. .+|||
T Consensus 14 kV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~-~e~~~ 50 (50)
T 1zrj_A 14 KVNELREELQRRGLDTRGLKAELAERLQAALS-GPSSG 50 (50)
T ss_dssp CHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC-CCCCC
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh-cccCC
Confidence 4678999999999985 55666666654 37776
Done!