RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9119
(250 letters)
>gnl|CDD|216614 pfam01625, PMSR, Peptide methionine sulfoxide reductase. This
enzyme repairs damaged proteins. Methionine sulfoxide in
proteins is reduced to methionine.
Length = 147
Score = 116 bits (293), Expect = 7e-33
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 7 HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPT------VQMKTQYRSMILH 60
+ +C+ +G H E +V +DPS ISY+E+L +F++ HDPT TQYRS I +
Sbjct: 40 YEEVCSGTTG-HAEAVRVTYDPSKISYEELLEVFFEIHDPTDLNRQGNDRGTQYRSAIFY 98
Query: 61 VNPEDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEE 99
+ E K++AE SL + K KPI T + P FY AE+
Sbjct: 99 HDEEQKKIAEASLERLQKKFGKPIVTEIEPLTTFYPAED 137
>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase
[Posttranslational modification, protein turnover,
chaperones].
Length = 174
Score = 111 bits (281), Expect = 8e-31
Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 9/100 (9%)
Query: 8 RGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHV 61
+C+ +G H E +V +DP VISY+E+L +F++ HDPT + TQYRS I +
Sbjct: 47 EEVCSGTTG-HAEAVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDRGTQYRSAIYYT 105
Query: 62 NPEDKEVAEKSLAEEKTKH--RKPITTLVVPFKRFYDAEE 99
N E K +AE S+ E + +KPI T + P K FY AEE
Sbjct: 106 NEEQKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEE 145
>gnl|CDD|237597 PRK14054, PRK14054, methionine sulfoxide reductase A; Provisional.
Length = 172
Score = 108 bits (273), Expect = 1e-29
Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 9/100 (9%)
Query: 8 RGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHV 61
+C+ +G H E ++ +DP+VISY+E+L +F++ HDPT + TQYRS I +
Sbjct: 44 EQVCSGTTG-HAEAVEITYDPAVISYRELLELFFQIHDPTTLNRQGNDRGTQYRSAIFYH 102
Query: 62 NPEDKEVAEKSLAEEKTKHR--KPITTLVVPFKRFYDAEE 99
+ E KE+AE S+AE + KPI T V P + FY+AEE
Sbjct: 103 DEEQKEIAEASIAELQASGLFDKPIVTEVEPAETFYEAEE 142
>gnl|CDD|237269 PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional.
Length = 186
Score = 95.1 bits (237), Expect = 3e-24
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 11/100 (11%)
Query: 10 ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK-------TQYRSMILHVN 62
+CT +G H E Q+ +DP +SY+ +L+IF+ HDPT Q+ QYRS I + +
Sbjct: 51 VCTGTTG-HAEAVQITYDPKQVSYENLLQIFFSTHDPT-QLNRQGPDRGEQYRSAIFYHD 108
Query: 63 PEDKEVAEKSLA--EEKTKHRKPITTLVVPFKRFYDAEEW 100
E K+VAE +A +E +KPI T + P+K FY AE++
Sbjct: 109 EEQKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAEDY 148
>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase. This model
describes peptide methionine sulfoxide reductase (MsrA),
a repair enzyme for proteins that have been inactivated
by oxidation. The enzyme from E. coli is coextensive
with this model and has enzymatic activity. However, in
all completed genomes in which this module is present, a
second protein module, described in TIGR00357, is also
found, and in several cases as part of the same
polypeptide chain: N-terminal to this module in
Helicobacter pylori and Haemophilus influenzae (as in
PilB of Neisseria gonorrhoeae) but C-terminal to it in
Treponema pallidum. PilB, containing both domains, has
been shown to be important for the expression of
adhesins in certain pathogens [Protein fate, Protein
modification and repair, Cellular processes, Adaptations
to atypical conditions].
Length = 149
Score = 93.3 bits (232), Expect = 7e-24
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 7 HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
+ +C+ +G H E QV +DP VISY+E+L +FW+ HDPT + TQYRS I +
Sbjct: 40 YEEVCSGDTG-HAEAVQVTYDPKVISYEELLDVFWEIHDPTTGNRQGNDIGTQYRSGIYY 98
Query: 61 VNPEDKEVAEKSLAE--EKTKHRKPITTLVVPFKRFYDAEEW 100
+ ++ A S + PI T + P + FY AEE+
Sbjct: 99 HSDAQEKAAAASKERLQAAANYGDPIVTEIEPAENFYYAEEY 140
>gnl|CDD|234604 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional.
Length = 213
Score = 89.9 bits (224), Expect = 6e-22
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 11/102 (10%)
Query: 8 RGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHV 61
R +C+ +G H EV +V +DP+VISY+++L++FW++HDPT M+ TQYRS I +
Sbjct: 86 REVCSGRTG-HAEVVRVVYDPAVISYEQLLQVFWENHDPTQGMRQGNDVGTQYRSAIYTL 144
Query: 62 NPEDKEVAEKSL----AEEKTKHRKPITTLVVPFKRFYDAEE 99
PE AE S PITT + P FY AE+
Sbjct: 145 TPEQLAAAEASREAYQQALAAAGDGPITTEIAPAPPFYYAED 186
>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A
protein; Provisional.
Length = 283
Score = 91.1 bits (227), Expect = 7e-22
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 8/96 (8%)
Query: 10 ICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNP 63
+C+ +G H E +V+FDP+ ISY+ +L++F++ HDPT + TQYRS I + +
Sbjct: 170 VCSGTTG-HAEAVRVEFDPAKISYETLLKVFFEIHDPTQLNRQGPDIGTQYRSAIFYHDD 228
Query: 64 EDKEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEE 99
E K++AEK +AE K P+ T V FY AE+
Sbjct: 229 EQKQIAEKLIAELTKK-GYPVVTEVEAAGPFYPAED 263
>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide
reductase A/B protein; Provisional.
Length = 521
Score = 71.1 bits (174), Expect = 4e-14
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 13 VYSGD-HTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILHVNPED 65
VY H E +V +D +S IL+ +++ DPT K TQYRS + + +P D
Sbjct: 241 VYRHSGHAETVKVTYDADKLSLDTILQYYFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAD 300
Query: 66 KEVAEKSLAEEKTKHRKPITTLVVPFKRFYDAEEW 100
K V +L E+ K++ P+ P K FYDAEE+
Sbjct: 301 KAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEY 335
>gnl|CDD|234678 PRK00175, metX, homoserine O-acetyltransferase; Provisional.
Length = 379
Score = 29.4 bits (67), Expect = 1.6
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 93 RFYDAEEWPRRVSLRRRRNIGNPSPHLSYRSHDSMTRK 130
+Y+ P R L R IG H++Y S D + K
Sbjct: 209 DYYEHGVVPER-GLAVARMIG----HITYLSDDELDEK 241
>gnl|CDD|162081 TIGR00874, talAB, transaldolase. This family includes the majority
of known and predicted transaldolase sequences,
including E. coli TalA and TalB. It excluded two other
families. The first includes E. coli transaldolase-like
protein TalC. The second family includes the putative
transaldolases of Helicobacter pylori and Mycobacterium
tuberculosis [Energy metabolism, Pentose phosphate
pathway].
Length = 317
Score = 29.3 bits (66), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 24 VDFDPSVISYKEILRIFWKHHDPTVQMKTQYRS 56
++ DP V S K+I + KH PT M +R+
Sbjct: 195 IEEDPGVASVKKIYNYYKKHGYPTEVMGASFRN 227
>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane
subunit; Provisional.
Length = 987
Score = 29.1 bits (65), Expect = 2.5
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 101 PRRVSLRRRRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQERRLLQNLPPSGTPERL 158
+ + R+ +G P L +K L E+ E R ++ E L
Sbjct: 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 28.5 bits (64), Expect = 2.7
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 58 ILHVNPEDKEVAEKSLAEEKTKHRKPITTLVVP 90
L VNP+D E+ + L EE +V
Sbjct: 161 TLRVNPDDLEIIRQQLDEE--LSLLGWRLELVA 191
>gnl|CDD|213892 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate reductase, class
1b, beta subunit. Members of this family are NrdF, the
beta subunit of class 1b ribonucleotide reductase. This
form uses a dimanganese moiety associated with a
tyrosine radical to reduce the cellular requirement for
iron [Purines, pyrimidines, nucleosides, and
nucleotides, 2'-Deoxyribonucleotide metabolism].
Length = 313
Score = 28.7 bits (65), Expect = 2.9
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 224 DQLGLSEDVKNYVR 237
D++GL+EDVK +VR
Sbjct: 237 DEVGLTEDVKKFVR 250
>gnl|CDD|218835 pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This
family consists of several bacterial ABC transporter
proteins which are homologous to the EcsB protein of
Bacillus subtilis. EcsB is thought to encode a
hydrophobic protein with six membrane-spanning helices
in a pattern found in other hydrophobic components of
ABC transporters.
Length = 385
Score = 28.7 bits (65), Expect = 3.2
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 208 GYVVGFGGIKQFEEEADQ---LGLSEDVKNYVRK 238
++ G ++ +EADQ L E +K Y++K
Sbjct: 66 LLLLTIGRLRTLLKEADQVFLLPKEEHMKKYLKK 99
>gnl|CDD|163153 TIGR03142, cytochro_ccmI, cytochrome c-type biogenesis protein
CcmI. This TPR repeat-containing protein is the CcmI
protein (also called CycH) of c-type cytochrome
biogenesis. CcmI is thought to act as an apo-cytochrome
c chaperone. This model describes the N-terminal region
of the protein, Members of this protein family [Protein
fate, Protein folding and stabilization, Energy
metabolism, Electron transport].
Length = 117
Score = 27.2 bits (61), Expect = 3.7
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 134 ASAQVELQERRLLQNLPPSGTPERLCRGLNNRLLFSL 170
+A+ ELQ RRLL ++P + T + RL +
Sbjct: 63 EAARAELQ-RRLLADIPAAETAAARQAKRSGRLAALV 98
>gnl|CDD|129709 TIGR00622, ssl1, transcription factor ssl1. All proteins in this
family for which functions are known are components of
the TFIIH complex which is involved in the initiaiton of
transcription and nucleotide excision repair.This family
is based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 112
Score = 27.2 bits (60), Expect = 3.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 166 LLFSLH---SYHQKYRLRQHSELQPKLNFKSEDCY 197
L+ S H SYH + L+ E+ + S C+
Sbjct: 25 LILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCF 59
>gnl|CDD|180530 PRK06328, PRK06328, type III secretion system protein; Validated.
Length = 223
Score = 27.8 bits (62), Expect = 4.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 52 TQYRSMILHVNPEDKEVAEKSLAEEK 77
TQ++ +I+HVNP+D + EKS E K
Sbjct: 129 TQHKRIIIHVNPKDLAIVEKSRPELK 154
>gnl|CDD|132123 TIGR03079, CH4_NH3mon_ox_B, methane monooxygenase/ammonia
monooxygenase, subunit B. Both ammonia oxidizers such
as Nitrosomonas europaea and methanotrophs (obligate
methane oxidizers) such as Methylococcus capsulatus each
can grow only on their own characteristic substrate.
However, both groups have the ability to oxidize both
substrates, and so the relevant enzymes must be named
here according to their ability to oxidze both. The
protein family represented here reflects subunit B of
both the particulate methane monooxygenase of
methylotrophs and the ammonia monooxygenase of
nitrifying bacteria.
Length = 399
Score = 28.3 bits (63), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 93 RFYDAEEWPRRVSLRRRR--NIGNPSP 117
+F+ AE+WPR V N+G+PSP
Sbjct: 57 KFHLAEDWPRAVEKPHVSFFNVGSPSP 83
>gnl|CDD|183458 PRK12346, PRK12346, transaldolase A; Provisional.
Length = 316
Score = 27.8 bits (62), Expect = 5.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 23 QVDFDPSVISYKEILRIFWKHHDPTVQMKTQYR 55
V+ DP V S + I + +H T+ M +R
Sbjct: 195 VVEEDPGVKSVRNIYDYYKQHRYETIVMGASFR 227
>gnl|CDD|227480 COG5151, SSL1, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit SSL1 [Transcription / DNA replication,
recombination, and repair].
Length = 421
Score = 28.0 bits (62), Expect = 5.4
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 166 LLFSLH---SYHQKYRLRQHSELQPKLNFKSEDCY 197
L+ S H SYH Y L+ E N KS C+
Sbjct: 332 LILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCF 366
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 27.6 bits (62), Expect = 6.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 59 LHVNPEDKEVAEKSLAEEKTKH 80
L VNP+D E+ E+ L E + H
Sbjct: 180 LRVNPDDLELVEQLLGAELSLH 201
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 27.7 bits (61), Expect = 7.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 130 KTLRASAQVELQERRLLQNLPPSGTPER----LCRGLNNR 165
+ LR A + Q RL LP +G P CR +NR
Sbjct: 512 QELRRPAHILFQIYRLRCRLPGAGGPACGPEAECRPPDNR 551
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 27.6 bits (62), Expect = 7.5
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 68 VAEKSLAEEKTKH--RKPITTLVVPFKRFYDAEEWPRRVS--LRRRR 110
V + EE+ +H + + VP KRFY EE PR S L R
Sbjct: 430 VKSGEVTEEELRHFCEEKLAKYKVP-KRFYFVEELPRNASGKLLRHE 475
>gnl|CDD|220007 pfam08760, DUF1793, Domain of unknown function (DUF1793). This
presumed domain is found at the C-terminus of a
glutaminase protein from fungi. This domain is also
found as a single domain protein in Bacteroides
thetaiotaomicron.
Length = 170
Score = 26.8 bits (60), Expect = 7.9
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 215 GIKQFEEEADQLGLSEDVKNYV---RKYVKRYEGSGM 248
GI E A+ LG S+D +NY ++Y ++E +
Sbjct: 2 GIAAMGELAEMLGHSDDAENYTNIAKEYADKWEELAI 38
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 27.6 bits (62), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 28 PSVISYKEILRIFWKHHDPTVQMKTQYR 55
P V++ KEIL F +H V +T+Y
Sbjct: 341 PKVLNLKEILSEFLEHRLEVVTRRTEYE 368
>gnl|CDD|181543 PRK08734, PRK08734, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 305
Score = 27.2 bits (60), Expect = 8.5
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 92 KRFYDAEEWP-RRVSLRR----RRNIGNPSPHLSYRSHDSMTRKTLRASAQVELQERRLL 146
KR D W R+++ R RRN+ P LS + + + LR++A+ L+ R
Sbjct: 26 KRLADLLAWSWRKLNARESRVTRRNLELAYPELSPQQRAQLHAQILRSTARQALEVLRTW 85
Query: 147 QNLPPSGTPERL 158
+ PP+ RL
Sbjct: 86 TH-PPAENLARL 96
>gnl|CDD|176887 cd08878, RHO_alpha_C_DMO-like, C-terminal catalytic domain of the
oxygenase alpha subunit of dicamba O-demethylase and
related aromatic ring hydroxylating dioxygenases.
C-terminal catalytic domain of the oxygenase alpha
subunit of Stenotrophomonas maltophilia dicamba
O-demethylase (DMO) and related Rieske-type non-heme
iron aromatic ring-hydroxylating oxygenases (RHOs, also
known as aromatic ring hydroxylating dioxygenases). RHOs
utilize non-heme Fe(II) to catalyze the addition of
hydroxyl groups to the aromatic ring, an initial step in
the oxidative degradation of aromatic compounds. RHOs
are composed of either two or three protein components,
and are comprised of an electron transport chain (ETC)
and an oxygenase. The ETC transfers reducing equivalents
from the electron donor to the oxygenase component,
which in turn transfers electrons to the oxygen
molecules. The oxygenase components are oligomers,
either (alpha)n or (alpha)n(beta)n. The alpha subunits
are the catalytic components and have an N-terminal
domain, which binds a Rieske-like 2Fe-2S cluster, and
the C-terminal catalytic domain which binds the non-heme
Fe(II). The Fe(II) is co-ordinated by conserved His and
Asp residues. Oxygenases belonging to this subgroup
include the alpha subunits of carbazole
1,9a-dioxygenase, phthalate dioxygenase, vanillate
O-demethylase, Pseudomonas putida 2-oxoquinoline
8-monooxygenase, and Comamonas testosteroni T-2
p-toluenesulfonate dioxygenase. It also includes the
C-terminal domain of the lignin biphenyl-specific
O-demethylase (LigX) of the 5,5'-dehydrodivanillic acid
O- demethylation system of Sphingomonas paucimobilis
SYK-6. This subfamily belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket.
Length = 196
Score = 27.0 bits (60), Expect = 9.2
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 9/42 (21%)
Query: 38 RIFWKHHDPT---------VQMKTQYRSMILHVNPEDKEVAE 70
FW ++ RS + EDKE E
Sbjct: 122 HYFWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNEDKEAVE 163
>gnl|CDD|227890 COG5603, TRS20, Subunit of TRAPP, an ER-Golgi tethering complex
[Cell motility and secretion].
Length = 136
Score = 26.4 bits (58), Expect = 9.7
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 50 MKTQYRSMILHVNPEDKEVAEKSLAEEKTKHRKPITTLVVPF 91
M + + + +H N K +S +E H TL+ PF
Sbjct: 75 MPSGMKFLFIHQNQSRKNA--RSFLQE--VHELYAKTLMSPF 112
>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with
C-terminal CBS domains [Transcription].
Length = 187
Score = 26.6 bits (59), Expect = 9.7
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 25 DFDPSVISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDK 66
DP + + K IL + + KT S ++ V+P+D
Sbjct: 42 KVDPRLSTVKRILEALEEAEKTRITAKTIMHSPVVSVSPDDS 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,992,122
Number of extensions: 1236648
Number of successful extensions: 1216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1202
Number of HSP's successfully gapped: 43
Length of query: 250
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 155
Effective length of database: 6,723,972
Effective search space: 1042215660
Effective search space used: 1042215660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)