RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9119
         (250 letters)



>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase
           {Escherichia coli [TaxId: 562]}
          Length = 211

 Score = 64.3 bits (156), Expect = 3e-13
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 12/104 (11%)

Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMKT------QYRSMILH 60
           +R +C+  +G H E  ++ +DPSVISY+++L++FW++HDP   M+       QYRS I  
Sbjct: 82  YREVCSGDTG-HAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYP 140

Query: 61  VNPEDKEVAEKSLAEEKTK-----HRKPITTLVVPFKRFYDAEE 99
           + PE    A  SL   +         + ITT +     FY AE+
Sbjct: 141 LTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAED 184


>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 192

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 11/103 (10%)

Query: 7   HRGICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQMK------TQYRSMILH 60
           ++ +C+  +G H EV +V F P  IS++E+L++FW++HDPT  M+      +QYRS I  
Sbjct: 77  YKEVCSGKTG-HAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYP 135

Query: 61  VNPEDKEVAEKSLAEE----KTKHRKPITTLVVPFKRFYDAEE 99
            + E    A KS  +            ITT +   + FY AE+
Sbjct: 136 TSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAED 178


>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 168

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 9   GICTVYSGDHTEVTQVDFDPSVISYKEILRIFWKHHDPTVQ------MKTQYRSMILHVN 62
                  G H E  ++ FDP+V  Y+ +L  F++ HDPT +        T YRS I + +
Sbjct: 43  NATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFD 102

Query: 63  PEDKEVAEKSLAEEKTKHR--KPITTLVVPFKRFYDAEE 99
            + K +A  ++A+ +        + T V P   F++AE 
Sbjct: 103 EQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEP 141


>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
           {Corynebacterium ammoniagenes [TaxId: 1697]}
          Length = 284

 Score = 26.2 bits (57), Expect = 3.4
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 217 KQFEEEA-DQLGLSEDVKNYVR 237
            ++ E+  D LG +EDVK ++R
Sbjct: 231 IEYTEDIYDDLGWTEDVKRFLR 252


>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
           maritima [TaxId: 2336]}
          Length = 206

 Score = 25.9 bits (56), Expect = 3.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 81  RKPITTLVVPFKRFYDAEEWPRR 103
           RK + T++VP  R  +  E+ R+
Sbjct: 2   RKEVQTMLVPMDRVNEVYEFVRQ 24


>d1tlja_ d.282.1.1 (A:) Hypothetical protein SSo0622 {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 189

 Score = 25.1 bits (55), Expect = 7.3
 Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 31  ISYKEILRIFWKHHDPTVQMKTQYRSMILHVNPEDKEVAEKSLA 74
           I+ +++  +  K+    + +    +  I+H+  ++ E     L 
Sbjct: 75  ITEQDLEDVLSKNQVRRLWLI--VQGPIIHIYAKNIETGWDILK 116


>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 272

 Score = 25.0 bits (54), Expect = 8.7
 Identities = 4/23 (17%), Positives = 9/23 (39%)

Query: 25 DFDPSVISYKEILRIFWKHHDPT 47
           ++P+  +Y  +    WK     
Sbjct: 4  GYNPAKNNYHPVEDACWKPGQKV 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 959,758
Number of extensions: 44785
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 13
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)