BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9120
         (263 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
           Trifluoroacetonyl-Coa And Citrate
 pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
           Trifluoroacetonyl-Coa And Citrate
 pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
           And Oxaloacetate
          Length = 437

 Score = 30.8 bits (68), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 10  EEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSL-RFGDSVHFVQL---WG 65
           E  F  A+     R K+++ +++DA +   + PC+    + +L R G S+  +     W 
Sbjct: 151 ESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWS 210

Query: 66  SNPLHTIIFTEPDF 79
            N  + + +T+P F
Sbjct: 211 HNFTNMLGYTDPQF 224


>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
           And Malate
 pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
           Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
           Synthase
 pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
           Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
           Synthase
 pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
           Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
           Of Pka Matching On Binding Affinity And Hydrogen Bond
           Length
 pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
           Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
           Of Pka Matching On Binding Affinity And Hydrogen Bond
           Length
          Length = 435

 Score = 30.8 bits (68), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 10  EEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSL-RFGDSVHFVQL---WG 65
           E  F  A+     R K+++ +++DA +   + PC+    + +L R G S+  +     W 
Sbjct: 149 ESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWS 208

Query: 66  SNPLHTIIFTEPDF 79
            N  + + +T+P F
Sbjct: 209 HNFTNMLGYTDPQF 222


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,933,903
Number of Sequences: 62578
Number of extensions: 316748
Number of successful extensions: 587
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 5
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)