Query psy9120
Match_columns 263
No_of_seqs 75 out of 77
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:25:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1138|consensus 100.0 4.7E-62 1E-66 473.3 13.0 205 1-260 351-556 (653)
2 KOG1138|consensus 99.6 1.4E-17 3E-22 163.6 -2.3 157 44-203 123-302 (653)
3 PF10996 Beta-Casp: Beta-Casp 98.5 2E-07 4.4E-12 74.5 5.1 41 39-79 78-118 (126)
4 TIGR03675 arCOG00543 arCOG0054 98.0 1.3E-05 2.9E-10 81.9 7.8 82 39-122 492-594 (630)
5 KOG1137|consensus 97.8 0.00019 4.2E-09 72.6 10.6 81 40-122 322-417 (668)
6 KOG1136|consensus 97.1 0.0049 1.1E-07 60.0 10.5 140 40-237 316-469 (501)
7 COG1782 Predicted metal-depend 94.8 0.043 9.4E-07 55.8 5.1 109 6-122 471-601 (637)
8 KOG1135|consensus 79.3 3 6.5E-05 44.0 5.0 50 199-249 590-639 (764)
9 COG1236 YSH1 Predicted exonucl 79.2 7.5 0.00016 38.3 7.6 85 38-122 294-390 (427)
10 PF07522 DRMBL: DNA repair met 64.5 47 0.001 26.3 7.7 88 35-122 7-103 (110)
11 KOG1135|consensus 61.0 25 0.00055 37.4 6.9 44 35-78 313-356 (764)
12 PF07521 RMMBL: RNA-metabolisi 55.4 17 0.00037 24.5 3.2 33 90-122 4-36 (43)
13 COG4553 DepA Poly-beta-hydroxy 54.9 22 0.00049 34.7 5.0 82 36-119 135-227 (415)
14 TIGR00649 MG423 conserved hypo 50.3 53 0.0012 31.8 6.9 83 37-122 282-380 (422)
15 COG1167 ARO8 Transcriptional r 42.9 56 0.0012 32.3 5.8 64 57-122 167-231 (459)
16 KOG1411|consensus 40.6 55 0.0012 32.7 5.2 81 17-122 114-201 (427)
17 PF04413 Glycos_transf_N: 3-De 37.4 61 0.0013 28.3 4.6 74 42-122 22-100 (186)
18 PF00464 SHMT: Serine hydroxym 32.0 60 0.0013 32.2 4.1 48 92-159 141-191 (399)
19 PLN03111 DNA-directed RNA poly 28.2 54 0.0012 29.9 2.8 36 43-78 69-104 (206)
20 COG2265 TrmA SAM-dependent met 23.9 1.2E+02 0.0026 30.3 4.6 49 55-126 348-398 (432)
21 PF12078 DUF3557: Domain of un 21.1 1.4E+02 0.0031 24.2 3.9 58 11-69 83-142 (154)
No 1
>KOG1138|consensus
Probab=100.00 E-value=4.7e-62 Score=473.32 Aligned_cols=205 Identities=48% Similarity=0.823 Sum_probs=198.3
Q ss_pred CccccccCCCCCCchHHHHHhCceeeecccCchhhhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCC
Q psy9120 1 CKQSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFP 80 (263)
Q Consensus 1 sKQ~kvy~PE~PF~H~~Lik~~rL~~f~si~~~~f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~ 80 (263)
|||+|||+||+||+|+.||++|||++|.++++. ||++||+|||||+|||||||||+|||+|.||.+|+|++|++||||+
T Consensus 351 akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~-fSndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~ 429 (653)
T KOG1138|consen 351 AKQNKVYLPEAPFPHSTLITINRLKIYLSLLGL-FSNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFS 429 (653)
T ss_pred hhccceeccCCCCCCceEEeecceeehHHHHHH-HhhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCc
Confidence 699999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcccceeEEEecccCCCChhhHHHHHhhcCCCeeecccccCCcccCCCceecccceeecCCCCchhHHHHhhh
Q psy9120 81 YVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNA 160 (263)
Q Consensus 81 ~~~~l~PF~pl~mkv~~~Pid~rl~~~~~~~Ll~~l~P~~li~~~~~P~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 160 (263)
+.++|+||||++||+++||||+||||+|+++|++++||++++ ||+
T Consensus 430 ~~~vl~PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vl----cpe------------------------------- 474 (653)
T KOG1138|consen 430 YLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVL----CPE------------------------------- 474 (653)
T ss_pred hhhhhcCCccccceeEeccccccccHHHHHHHHHHhCCCEEE----Chh-------------------------------
Confidence 999999999999999999999999999999999999999999 999
Q ss_pred hhhhhcccccCCCCCCchhhhhccceeeeeeecCCccccceeeeecCceEeecCccceeeeecCHHHHhhCcccccCCC-
Q psy9120 161 NVLLLSGLTQTPTSNPDAMLGELCMTVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPG- 239 (263)
Q Consensus 161 ~~~~~~~ytq~~~~~p~~~l~~l~~~~~~t~~~~g~~~~p~~~~~~~~~l~ip~~r~~~~v~l~~eLA~~l~p~~~~~g- 239 (263)
+|||+...+|+.+++-+. -.|+.+++.+|++++|++||+++|++++|||+.|.|+|+++|
T Consensus 475 ------aytqp~~~ap~~~i~~~d-------------~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~~~~ 535 (653)
T KOG1138|consen 475 ------AYTQPIPLAPIKTISILD-------------YFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELRQGE 535 (653)
T ss_pred ------hhcCCCCccchheehhcc-------------ccccceeehhHHhcCccccceeEEEEcHHHHhhCChhhccCce
Confidence 899999999997776222 467889999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEEECCeEEEec
Q psy9120 240 LAIASIKGNLKVKDNQYCIDM 260 (263)
Q Consensus 240 v~vA~l~g~L~~~d~~~~L~~ 260 (263)
+++|+++|+|+++||+|+|+|
T Consensus 536 ~~iAtl~~~L~~~d~kh~Lvp 556 (653)
T KOG1138|consen 536 FGIATLKGVLLMKDGKHRLVP 556 (653)
T ss_pred eEEEEEEEEEEEecCceeeee
Confidence 999999999999999999998
No 2
>KOG1138|consensus
Probab=99.63 E-value=1.4e-17 Score=163.63 Aligned_cols=157 Identities=25% Similarity=0.376 Sum_probs=125.0
Q ss_pred EEecCCCcccccchH-----HHHHHhcCCC------Cc--eEEeeCCCCChhhh--cCCCcccc------eeEEEecccC
Q psy9120 44 IVFCGHPSLRFGDSV-----HFVQLWGSNP------LH--TIIFTEPDFPYVEA--LAPFQPLA------MKSIHCPIDT 102 (263)
Q Consensus 44 VvFa~hpSLR~G~av-----hlle~w~~~~------~n--~iIliep~~~~~~~--l~PF~pl~------mkv~~~Pid~ 102 (263)
=|+++.|.+++|... .|+|+..+.+ ++ .-.+-.|.=+...+ -.+++.+. .||+-..++.
T Consensus 123 kiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~e 202 (653)
T KOG1138|consen 123 KIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAE 202 (653)
T ss_pred EEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCchhhccccceeeeeehhHHHHHHHhheecccce
Confidence 478999999999764 4777764322 22 11111111111111 12233331 6899999999
Q ss_pred CCChhhHHHHHhhcCCCeee-cccc-cCCcccCCCceecccceeecCCCCchhHHHHhhhhhhhhcccccCCCCCCchhh
Q psy9120 103 SLNFNQANKLIRELKPSTLW-SRRY-LPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAML 180 (263)
Q Consensus 103 rl~~~~~~~Ll~~l~P~~li-~~~~-~P~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ytq~~~~~p~~~l 180 (263)
.|+..++-.+-. ++.++.+ |||| +-. .+++++|||||+.+|||||+|||.+||++|++..++++|+|++||+.|.
T Consensus 203 kidlfga~~vtp-lsSG~~lGSsnW~I~t--~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~tanpd~m~ 279 (653)
T KOG1138|consen 203 KIDLFGALIVTP-LSSGYDLGSSNWLINT--PNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLPTANPDEMG 279 (653)
T ss_pred eeeccceEEEEe-ccccccccccceEEec--CCcceEEEecCcccccCCccccccccccccEEEEecccccccCCccchh
Confidence 999999877766 8999999 9999 666 7899999999999999999999999999999999999999999999999
Q ss_pred hhccceeeeeeecCCccccceee
Q psy9120 181 GELCMTVVGTLRANGKVDRKVLT 203 (263)
Q Consensus 181 ~~l~~~~~~t~~~~g~~~~p~~~ 203 (263)
+|||+.++.|+|++|+|-.|++|
T Consensus 280 gelc~nvt~~~rn~GsvL~PcyP 302 (653)
T KOG1138|consen 280 GELCKNVTLTGRNHGSVLLPCYP 302 (653)
T ss_pred hhHHHHHHHHhhcCCceeeeccC
Confidence 99999999999999999999874
No 3
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=98.47 E-value=2e-07 Score=74.49 Aligned_cols=41 Identities=32% Similarity=0.442 Sum_probs=37.3
Q ss_pred ccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCC
Q psy9120 39 FRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDF 79 (263)
Q Consensus 39 f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~ 79 (263)
..+||||||++.+|..|++.+++++|..||+|+|||++..-
T Consensus 78 ~~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~ 118 (126)
T PF10996_consen 78 LSGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQA 118 (126)
T ss_dssp SCSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--
T ss_pred CCCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCC
Confidence 46999999999999999999999999999999999997643
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=98.02 E-value=1.3e-05 Score=81.92 Aligned_cols=82 Identities=16% Similarity=0.351 Sum_probs=66.4
Q ss_pred ccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhcC--------CC--------c--ccceeEEEec-
Q psy9120 39 FRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALA--------PF--------Q--PLAMKSIHCP- 99 (263)
Q Consensus 39 f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l~--------PF--------~--pl~mkv~~~P- 99 (263)
..+||||+|++..|..|+++++++.|+.||+|+|||+ +|.....+. .+ + +.+|+|..++
T Consensus 492 ~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~Iifv--Gyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~g 569 (630)
T TIGR03675 492 SDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFV--GYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVETVEG 569 (630)
T ss_pred CCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEe--CCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEEEeCC
Confidence 3689999999999999999999999999999999998 666653321 11 1 2357777776
Q ss_pred ccCCCChhhHHHHHhhcCC--Ceee
Q psy9120 100 IDTSLNFNQANKLIRELKP--STLW 122 (263)
Q Consensus 100 id~rl~~~~~~~Ll~~l~P--~~li 122 (263)
+..=-|..++-..++.++| +.++
T Consensus 570 fSaHaD~~~L~~~v~~~~p~p~~v~ 594 (630)
T TIGR03675 570 FSGHSDRRQLMNYVRRMQPKPEKIL 594 (630)
T ss_pred ccccCCHHHHHHHHHhcCCCCCEEE
Confidence 8888999999999999976 6676
No 5
>KOG1137|consensus
Probab=97.75 E-value=0.00019 Score=72.59 Aligned_cols=81 Identities=20% Similarity=0.376 Sum_probs=68.8
Q ss_pred cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhc---------------CCCcccceeEEEecccCCC
Q psy9120 40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEAL---------------APFQPLAMKSIHCPIDTSL 104 (263)
Q Consensus 40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l---------------~PF~pl~mkv~~~Pid~rl 104 (263)
-.|||+-|+.--|+-|=+-.++|+|..|++|++|+ |+|.-+..+ .+=-|++|.|.++.|..-+
T Consensus 322 ~gP~vv~aspgmlqsglSRelfe~wcsD~kN~vli--pGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhv 399 (668)
T KOG1137|consen 322 EGPSVVMASPGMLQSGLSRELFERWCSDSKNAVLI--PGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHV 399 (668)
T ss_pred cCCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEe--ccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeech
Confidence 58999999987899999999999999999998874 455443222 2233568999999999999
Q ss_pred ChhhHHHHHhhcCCCeee
Q psy9120 105 NFNQANKLIRELKPSTLW 122 (263)
Q Consensus 105 ~~~~~~~Ll~~l~P~~li 122 (263)
++.|-.+.+++++|.++|
T Consensus 400 dy~q~s~fi~~i~~~~li 417 (668)
T KOG1137|consen 400 DYLQNSEFIADITPPHLI 417 (668)
T ss_pred hhhhhHHHHHHhCCCeEE
Confidence 999999999999999999
No 6
>KOG1136|consensus
Probab=97.07 E-value=0.0049 Score=59.95 Aligned_cols=140 Identities=18% Similarity=0.285 Sum_probs=102.3
Q ss_pred cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhh-----hc------CCCc---ccceeEEEecccCCCC
Q psy9120 40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVE-----AL------APFQ---PLAMKSIHCPIDTSLN 105 (263)
Q Consensus 40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~-----~l------~PF~---pl~mkv~~~Pid~rl~ 105 (263)
..|||+||+---|.-|-++..++.|..||+|.+|+ |+|.-.- ++ .=++ ..+++|-+..+..--|
T Consensus 316 pGp~VlFatPGMLhaG~SLkvFK~W~~~~~Nlvim--PGYcV~GTvG~kvl~G~~kvei~~~~~eirl~V~~maFSaHaD 393 (501)
T KOG1136|consen 316 PGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIM--PGYCVAGTVGHKVLNGATKVEIYGTKVEIRLKVEYMAFSAHAD 393 (501)
T ss_pred CCCEEEEcCCcccccccchHHHHhhCCCccceEee--cCceeccchhhhhhCCccEEEEeeeEEEEEEEEEEeeeccccC
Confidence 68999999955699999999999999999999886 6665421 11 1122 2379999999999999
Q ss_pred hhhHHHHHhhcCCCeeecccccCCcccCCCceecccceeecCCCCchhHHHHhhhhhhhhcccccCCCCCCchhhhhccc
Q psy9120 106 FNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKNANVLLLSGLTQTPTSNPDAMLGELCM 185 (263)
Q Consensus 106 ~~~~~~Ll~~l~P~~li~~~~~P~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ytq~~~~~p~~~l~~l~~ 185 (263)
-.++-+|++.|+|+++. + +|-+...+.-||..-. +|
T Consensus 394 AkGIm~li~~csPknVm----l-------------------VHGE~~kM~~Lk~ki~------------------~e--- 429 (501)
T KOG1136|consen 394 AKGIMQLIKQCSPKNVM----L-------------------VHGEKSKMKFLKEKIE------------------SE--- 429 (501)
T ss_pred chhHHHHHHhcCcceEE----E-------------------EeccchhhHHHHHhhH------------------hh---
Confidence 99999999999999998 2 3444444444442210 00
Q ss_pred eeeeeeecCCccccceeeeecCceEeecCccceeeeecCHHHHhhCcccccC
Q psy9120 186 TVVGTLRANGKVDRKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELR 237 (263)
Q Consensus 186 ~~~~t~~~~g~~~~p~~~~~~~~~l~ip~~r~~~~v~l~~eLA~~l~p~~~~ 237 (263)
. +.|++-=-.||++.|+. +-+.++++..|...++.--+++
T Consensus 430 -------~----~ip~~mPaNGetv~i~s-~~~i~~ri~~~~~~~~~k~~~k 469 (501)
T KOG1136|consen 430 -------F----DIPTFMPANGETVVISS-TTYIKARIPDEFLVSLSKPNLK 469 (501)
T ss_pred -------c----CCceeeCCCCCEEEecc-cceeeecCcHHHHHHhcCcccc
Confidence 1 55777777889999876 4567888888887776655554
No 7
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=94.76 E-value=0.043 Score=55.76 Aligned_cols=109 Identities=19% Similarity=0.298 Sum_probs=70.2
Q ss_pred ccCCCCCCchHHHHHhCceeeecccCchhhhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhc
Q psy9120 6 VYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEAL 85 (263)
Q Consensus 6 vy~PE~PF~H~~Lik~~rL~~f~si~~~~f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l 85 (263)
.+.++.||.-. .++..++-+..+-..+=-+||||.+++==|--|+++..++.|+.||+|++||+ +|+++-.|
T Consensus 471 ~~~g~NPF~se------~f~~V~~~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFV--gYQAeGTL 542 (637)
T COG1782 471 FHEGENPFLSE------IFKRVEGSDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFV--GYQAEGTL 542 (637)
T ss_pred hcCCCCCcccc------ceeecCChhHHHHHhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEE--EeccCcch
Confidence 34588888752 23333332211111122489999999999999999999999999999999998 45555444
Q ss_pred C----------CCcc---------cceeEEEec-ccCCCChhhHHHHHhhcCCC--eee
Q psy9120 86 A----------PFQP---------LAMKSIHCP-IDTSLNFNQANKLIRELKPS--TLW 122 (263)
Q Consensus 86 ~----------PF~p---------l~mkv~~~P-id~rl~~~~~~~Ll~~l~P~--~li 122 (263)
. |... ++|.|.-++ |..--+-.|+-+-+++++|+ .++
T Consensus 543 GRriq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki~ 601 (637)
T COG1782 543 GRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKIL 601 (637)
T ss_pred hhhhhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHHHHHHHHhcCCCCceeE
Confidence 1 2111 134444432 33346677888888888865 555
No 8
>KOG1135|consensus
Probab=79.29 E-value=3 Score=44.02 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=42.3
Q ss_pred cceeeeecCceEeecCccceeeeecCHHHHhhCcccccCCCceEEEEEEEE
Q psy9120 199 RKVLTLKRGEVLKIPLKRKRTRVNMSAEIAEAVEPCELRPGLAIASIKGNL 249 (263)
Q Consensus 199 ~p~~~~~~~~~l~ip~~r~~~~v~l~~eLA~~l~p~~~~~gv~vA~l~g~L 249 (263)
..++.-+.||++.+...----.|.|+..|.++|+++.++. -.+|.+-|++
T Consensus 590 ~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~l~f~k~~~-~evawid~~l 639 (764)
T KOG1135|consen 590 IDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSNLQFKKVGD-AEVAWIDGVL 639 (764)
T ss_pred ceeecccccceEEeeehheeeeeEechhhhhhheeeeccc-ceeeeeehhh
Confidence 4455667888888888888888999999999999999984 7799999988
No 9
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=79.18 E-value=7.5 Score=38.34 Aligned_cols=85 Identities=9% Similarity=0.075 Sum_probs=66.5
Q ss_pred hccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhh-----cCC-------CcccceeEEEecccCCCC
Q psy9120 38 EFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEA-----LAP-------FQPLAMKSIHCPIDTSLN 105 (263)
Q Consensus 38 ~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~-----l~P-------F~pl~mkv~~~Pid~rl~ 105 (263)
...+|+||++.---+.-|.+.+.++.|..+++|.++++....+.... ... --..++++...-++.=-+
T Consensus 294 ~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve~~~~s~Had 373 (427)
T COG1236 294 IDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEELDFSAHAD 373 (427)
T ss_pred ccCCceEEEEecccccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhcCCcEEeecceeecccceEEEeccccccC
Confidence 44799999988555899999999999999999999998876655411 111 111257777888888888
Q ss_pred hhhHHHHHhhcCCCeee
Q psy9120 106 FNQANKLIRELKPSTLW 122 (263)
Q Consensus 106 ~~~~~~Ll~~l~P~~li 122 (263)
..++..++++..|.+++
T Consensus 374 ~~~l~~~i~~~~~~~v~ 390 (427)
T COG1236 374 GDELLEFIKDISPPKVV 390 (427)
T ss_pred cHHHHHHHhcCCCceEE
Confidence 89999999999988887
No 10
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=64.50 E-value=47 Score=26.26 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=66.8
Q ss_pred hhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhcCC----C-----cccceeEEEecccCCCC
Q psy9120 35 FNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAP----F-----QPLAMKSIHCPIDTSLN 105 (263)
Q Consensus 35 f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l~P----F-----~pl~mkv~~~Pid~rl~ 105 (263)
|..+-++-+|=-++...++.-...-.++...+...+.|.+.--++.+.....- . ..-...++.+|...=-+
T Consensus 7 ~T~d~~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~~~~~~~~~~~VPYSeHSS 86 (110)
T PF07522_consen 7 FTTDPSETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSLQSRGNVRIYRVPYSEHSS 86 (110)
T ss_pred eecCCCCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCccccccccccccCCCceEEEEecccCCC
Confidence 55666777888889899998777778888887777777766555544433211 1 12257899999999999
Q ss_pred hhhHHHHHhhcCCCeee
Q psy9120 106 FNQANKLIRELKPSTLW 122 (263)
Q Consensus 106 ~~~~~~Ll~~l~P~~li 122 (263)
+.++...++.++|+.++
T Consensus 87 f~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 87 FSELKEFVSFLKPKKII 103 (110)
T ss_pred HHHHHHHHHhcCCcEEE
Confidence 99999999999999988
No 11
>KOG1135|consensus
Probab=61.03 E-value=25 Score=37.40 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=38.9
Q ss_pred hhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCC
Q psy9120 35 FNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPD 78 (263)
Q Consensus 35 f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~ 78 (263)
+++.--.|-||.|+-|+|-.|=+..++-.|.++++|.||||++.
T Consensus 313 lsr~p~gpkVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~ 356 (764)
T KOG1135|consen 313 LSRVPPGPKVVLASVPDLECGFSRDLFLEWASDPRNLILLTERG 356 (764)
T ss_pred HhcCCCCCeEEEeeccchhcchhHHHHHHHhcCCcceEEEecCC
Confidence 44444468999999999999999999999999999999999983
No 12
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=55.44 E-value=17 Score=24.51 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=27.7
Q ss_pred ccceeEEEecccCCCChhhHHHHHhhcCCCeee
Q psy9120 90 PLAMKSIHCPIDTSLNFNQANKLIRELKPSTLW 122 (263)
Q Consensus 90 pl~mkv~~~Pid~rl~~~~~~~Ll~~l~P~~li 122 (263)
+.+|++....+..--+..++.++++.++|+.++
T Consensus 4 ~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vi 36 (43)
T PF07521_consen 4 PVRARVEQIDFSGHADREELLEFIEQLNPRKVI 36 (43)
T ss_dssp E--SEEEESGCSSS-BHHHHHHHHHHHCSSEEE
T ss_pred EeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEE
Confidence 457889999999999999999999999999887
No 13
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=54.94 E-value=22 Score=34.75 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=59.2
Q ss_pred hhhccCceEEe--cCCCccc--ccchHHHHHHhcCCCCceEEeeCCCCChhhhc-------CCCcccceeEEEecccCCC
Q psy9120 36 NAEFRQPCIVF--CGHPSLR--FGDSVHFVQLWGSNPLHTIIFTEPDFPYVEAL-------APFQPLAMKSIHCPIDTSL 104 (263)
Q Consensus 36 ~~~f~~PCVvF--a~hpSLR--~G~avhlle~w~~~~~n~iIliep~~~~~~~l-------~PF~pl~mkv~~~Pid~rl 104 (263)
.++|-+...|= +||=-|- +--+..+++..|.+ -+.+-+--|.+|-..+. .|+.|..|...--|||+|+
T Consensus 135 itDW~dAr~Vp~~~G~FdldDYIdyvie~~~~~Gp~-~hv~aVCQP~vPvLAAisLM~~~~~p~~PssMtlmGgPIDaR~ 213 (415)
T COG4553 135 ITDWVDARMVPLEAGHFDLDDYIDYVIEMINFLGPD-AHVMAVCQPTVPVLAAISLMEEDGDPNVPSSMTLMGGPIDARK 213 (415)
T ss_pred EeeccccceeecccCCccHHHHHHHHHHHHHHhCCC-CcEEEEecCCchHHHHHHHHHhcCCCCCCceeeeecCcccccc
Confidence 44566555553 3332221 11234588889999 68888899999876554 7999999999999999999
Q ss_pred ChhhHHHHHhhcCCC
Q psy9120 105 NFNQANKLIRELKPS 119 (263)
Q Consensus 105 ~~~~~~~Ll~~l~P~ 119 (263)
|..-+|.|.. -+|-
T Consensus 214 nPTavN~lA~-~k~~ 227 (415)
T COG4553 214 NPTAVNELAT-EKSI 227 (415)
T ss_pred CcHHHhHhhh-ccch
Confidence 9999998876 4443
No 14
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=50.31 E-value=53 Score=31.82 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=48.9
Q ss_pred hhccCceEEecCCCcccccchHHHHHHhcCC--------CCceEEeeCCCCChhhhc--CC-----CcccceeEEE-ecc
Q psy9120 37 AEFRQPCIVFCGHPSLRFGDSVHFVQLWGSN--------PLHTIIFTEPDFPYVEAL--AP-----FQPLAMKSIH-CPI 100 (263)
Q Consensus 37 ~~f~~PCVvFa~hpSLR~G~avhlle~w~~~--------~~n~iIliep~~~~~~~l--~P-----F~pl~mkv~~-~Pi 100 (263)
+..++++||.++ .| +-|+ ...+.++..+ +.+++|+.-+.-+-.+.+ .- .....+++.. .=+
T Consensus 282 ~~~~~~~vii~t-g~-~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~ 358 (422)
T TIGR00649 282 NSPDENYLIITT-GS-QGEP-YAALTRIANNEHEQIRIRKGDTVVFSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHV 358 (422)
T ss_pred cCCcccEEEEEe-CC-CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEe
Confidence 334688998875 23 5555 5555556554 447899886554433311 00 1123344432 123
Q ss_pred cCCCChhhHHHHHhhcCCCeee
Q psy9120 101 DTSLNFNQANKLIRELKPSTLW 122 (263)
Q Consensus 101 d~rl~~~~~~~Ll~~l~P~~li 122 (263)
..--.-.++..|++.++|+++|
T Consensus 359 SgHa~~~dl~~~i~~~~Pk~~i 380 (422)
T TIGR00649 359 SGHASQEDHKLLLRLLKPKYII 380 (422)
T ss_pred cCCCCHHHHHHHHHHhCCCEEE
Confidence 3335677889999999999988
No 15
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=42.88 E-value=56 Score=32.32 Aligned_cols=64 Identities=16% Similarity=0.394 Sum_probs=52.0
Q ss_pred hHHHHHHhcCCCCceEEeeCCCCChhhhcCCCcccceeEEEecccC-CCChhhHHHHHhhcCCCeee
Q psy9120 57 SVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDT-SLNFNQANKLIRELKPSTLW 122 (263)
Q Consensus 57 avhlle~w~~~~~n~iIliep~~~~~~~l~PF~pl~mkv~~~Pid~-rl~~~~~~~Ll~~l~P~~li 122 (263)
+..++-+|=-+|..+|++-+|.|.....+ |..+-++++-+|+|. +|+...+..+++..+||.+.
T Consensus 167 al~l~~~~l~~pGd~v~vE~PtY~~~~~~--~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y 231 (459)
T COG1167 167 ALDLLLRLLLDPGDTVLVEDPTYPGALQA--LEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVY 231 (459)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCcHHHHHH--HHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEE
Confidence 44456666667999999999998765544 677789999999965 79999999999999999777
No 16
>KOG1411|consensus
Probab=40.60 E-value=55 Score=32.65 Aligned_cols=81 Identities=19% Similarity=0.349 Sum_probs=52.3
Q ss_pred HHHHhCceeeecccCch-------hhhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhcCCCc
Q psy9120 17 HLVKTGRLKHFKSIHDD-------AFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQ 89 (263)
Q Consensus 17 ~Lik~~rL~~f~si~~~-------~f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l~PF~ 89 (263)
+.||++|+....+|.+- +|.+.|-.-..||.+.|+ ||+.++ |+.+-+++...-
T Consensus 114 ~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PT------------WgNh~~---if~~ag~~~~~y----- 173 (427)
T KOG1411|consen 114 PVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPT------------WGNHKN---IFKDAGLPVKFY----- 173 (427)
T ss_pred hhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCc------------ccccCc---cccccCcceeee-----
Confidence 45789999999988773 466666666778888776 776554 444443332211
Q ss_pred ccceeEEEecccCCCChhhHHHHHhhcCCCeee
Q psy9120 90 PLAMKSIHCPIDTSLNFNQANKLIRELKPSTLW 122 (263)
Q Consensus 90 pl~mkv~~~Pid~rl~~~~~~~Ll~~l~P~~li 122 (263)
-++-|-+.++|+.++-.-+.+.-+..+|
T Consensus 174 -----rYyd~~t~gld~~g~ledl~~~p~gs~i 201 (427)
T KOG1411|consen 174 -----RYYDPKTRGLDFKGMLEDLGEAPEGSII 201 (427)
T ss_pred -----eeccccccccchHHHHHHHhcCCCCcEE
Confidence 1456667777777776666666666655
No 17
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=37.37 E-value=61 Score=28.26 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=40.0
Q ss_pred ceEEecCCCcccccch---HHHHHHhcCC-CCceEEeeCCCCChhh-hcCCCcccceeEEEecccCCCChhhHHHHHhhc
Q psy9120 42 PCIVFCGHPSLRFGDS---VHFVQLWGSN-PLHTIIFTEPDFPYVE-ALAPFQPLAMKSIHCPIDTSLNFNQANKLIREL 116 (263)
Q Consensus 42 PCVvFa~hpSLR~G~a---vhlle~w~~~-~~n~iIliep~~~~~~-~l~PF~pl~mkv~~~Pid~rl~~~~~~~Ll~~l 116 (263)
|.|-|-.. | .|++ ..+++.|... |.-.|++|.-.-...+ +..-|.+ ...+++.|+|. ..-+...++.+
T Consensus 22 ~~iWiHa~-S--vGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~v~~~~~P~D~---~~~~~rfl~~~ 94 (186)
T PF04413_consen 22 PLIWIHAA-S--VGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-RVDVQYLPLDF---PWAVRRFLDHW 94 (186)
T ss_dssp T-EEEE-S-S--HHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G-SEEE---SS---HHHHHHHHHHH
T ss_pred CcEEEEEC-C--HHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-CeEEEEeCccC---HHHHHHHHHHh
Confidence 66666432 2 4544 4588888864 6667777655433333 3232333 67789999997 56778899999
Q ss_pred CCCeee
Q psy9120 117 KPSTLW 122 (263)
Q Consensus 117 ~P~~li 122 (263)
+|+.+|
T Consensus 95 ~P~~~i 100 (186)
T PF04413_consen 95 RPDLLI 100 (186)
T ss_dssp --SEEE
T ss_pred CCCEEE
Confidence 999988
No 18
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=32.02 E-value=60 Score=32.18 Aligned_cols=48 Identities=25% Similarity=0.520 Sum_probs=31.7
Q ss_pred ceeEEEeccc---CCCChhhHHHHHhhcCCCeeecccccCCcccCCCceecccceeecCCCCchhHHHHhh
Q psy9120 92 AMKSIHCPID---TSLNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKN 159 (263)
Q Consensus 92 ~mkv~~~Pid---~rl~~~~~~~Ll~~l~P~~li~~~~~P~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 159 (263)
-.++...++| ..||..++.+++++.+|+.+| +-. +.-|++.|++-++.
T Consensus 141 ~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi----~G~----------------S~y~~~~d~~~~re 191 (399)
T PF00464_consen 141 YFESVPYPVDPDTGLIDYDELEKLAKEHKPKLII----CGA----------------SSYPRPIDFKRFRE 191 (399)
T ss_dssp HSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEE----EE-----------------SSTSS---HHHHHH
T ss_pred eEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEE----ECc----------------hhccCccCHHHHHH
Confidence 4678888999 669999999999999999999 333 23577788888753
No 19
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=28.24 E-value=54 Score=29.94 Aligned_cols=36 Identities=6% Similarity=0.076 Sum_probs=31.5
Q ss_pred eEEecCCCcccccchHHHHHHhcCCCCceEEeeCCC
Q psy9120 43 CIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPD 78 (263)
Q Consensus 43 CVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~ 78 (263)
.|+|++.+++-.-..-.+.++..++.-+..|++-++
T Consensus 69 ~V~F~~~~kvgvk~ir~~~~~~~~e~~~r~IlV~q~ 104 (206)
T PLN03111 69 LVFFPEEEKVGVKTIKTYAERMKDENVSRAILVLQS 104 (206)
T ss_pred EEEeCCCCccCHHHHHHHHHHHhhcCcceEEEEECC
Confidence 688999999888888889999999999999988775
No 20
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=23.94 E-value=1.2e+02 Score=30.30 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=32.3
Q ss_pred cchHHHHHHhcCCCCceEEeeCCCCChhhhcCCCcccceeEEEecccCCCChhhHHHHHhhcCCCeee--cccc
Q psy9120 55 GDSVHFVQLWGSNPLHTIIFTEPDFPYVEALAPFQPLAMKSIHCPIDTSLNFNQANKLIRELKPSTLW--SRRY 126 (263)
Q Consensus 55 G~avhlle~w~~~~~n~iIliep~~~~~~~l~PF~pl~mkv~~~Pid~rl~~~~~~~Ll~~l~P~~li--~~~~ 126 (263)
|++-.++..|....+...|++|| -..+++...+. .|.+++|+.++ |||=
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDP----------------------PR~G~~~~~lk-~l~~~~p~~IvYVSCNP 398 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDP----------------------PRAGADREVLK-QLAKLKPKRIVYVSCNP 398 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECC----------------------CCCCCCHHHHH-HHHhcCCCcEEEEeCCH
Confidence 57888888887555556666776 34455544444 45559999877 7774
No 21
>PF12078 DUF3557: Domain of unknown function (DUF3557); InterPro: IPR021942 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length.
Probab=21.12 E-value=1.4e+02 Score=24.22 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=40.1
Q ss_pred CCCchHHHHHhCceeeecccCch--hhhhhccCceEEecCCCcccccchHHHHHHhcCCCC
Q psy9120 11 EPFPHAHLVKTGRLKHFKSIHDD--AFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPL 69 (263)
Q Consensus 11 ~PF~H~~Lik~~rL~~f~si~~~--~f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~ 69 (263)
+.|.|..+-...+|.+...-... .....++.+.|.|. +..+-.-+...+++.|-.+.+
T Consensus 83 ~~~~~pii~~A~~L~i~~~~~~~~~~~l~~l~n~~v~~~-~~~~~~~~~~~li~~W~~~~r 142 (154)
T PF12078_consen 83 EDFDHPIIRNAKKLIISGNNNNEDWEILLKLRNKRVHLK-NDEFSWDDFLRLIENWIENGR 142 (154)
T ss_pred ccccChhhCcccEEEEeccCcccchHHHhhCCCCEEEEE-ecCCCHHHHHHHHHHHHhcCC
Confidence 56666555545555444332221 46777899999998 677778889999999987665
Done!