Query         psy9120
Match_columns 263
No_of_seqs    75 out of 77
Neff          4.7 
Searched_HMMs 29240
Date          Fri Aug 16 19:26:31 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy9120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9120hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3iek_A Ribonuclease TTHA0252;   98.6 1.2E-07 4.2E-12   89.8   8.7  107    3-117   273-394 (431)
  2 2i7t_A Cleavage and polyadenyl  98.4 3.5E-07 1.2E-11   86.6   7.9   81   40-122   320-415 (459)
  3 2xr1_A Cleavage and polyadenyl  97.5 0.00017 5.7E-09   71.9   7.8   83   40-122   502-604 (640)
  4 3af5_A Putative uncharacterize  97.4 0.00042 1.5E-08   69.0   9.8   83   40-122   513-615 (651)
  5 2ycb_A Beta-CAsp RNAse, cleava  97.4 0.00034 1.2E-08   69.4   8.4   83   40-122   498-600 (636)
  6 2i7x_A Protein CFT2; polyadeny  95.5   0.012 4.3E-07   59.5   5.3   41   37-80    332-372 (717)
  7 3bk2_A RNAse J, metal dependen  49.3      27 0.00094   33.7   6.3   80   40-122   305-402 (562)
  8 3zq4_A Ribonuclease J 1, RNAse  44.7      20 0.00069   34.8   4.5   83   37-122   287-387 (555)
  9 3ov5_A VIRB7 (XAC2622), unchar  14.4      67  0.0023   24.4   1.5   19   55-73     13-31  (85)
 10 3ou5_A Serine hydroxymethyltra  14.0      99  0.0034   30.3   2.9   47   93-159   176-225 (490)

No 1  
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=98.57  E-value=1.2e-07  Score=89.77  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=80.0

Q ss_pred             cccccCCCCCCchHHHHHhCceeeecccCchhhhhhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChh
Q psy9120           3 QSKVYLPEEPFPHAHLVKTGRLKHFKSIHDDAFNAEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYV   82 (263)
Q Consensus         3 Q~kvy~PE~PF~H~~Lik~~rL~~f~si~~~~f~~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~   82 (263)
                      |+.+..++.||.+.      .|+...+..........++||||||++.+|+.|+++|.++.|..||+|+|||+.  |...
T Consensus       273 ~~~~~~~~~pf~~~------~~~~~~~~~~~~~~~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~g--yq~~  344 (431)
T 3iek_A          273 QAHFLQGKNPFRPA------GLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVG--YQPQ  344 (431)
T ss_dssp             HHHHHTTSCTTCCT------TEEECCSHHHHHHHHHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECS--CCCT
T ss_pred             HHHHhcCCCCCCCC------CeEEeCCHHHHHHHhcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEEC--CCCC
Confidence            34566778898663      355555543222234568999999999999999999999999999999999984  5543


Q ss_pred             hhc--------------CCCcccceeEEEe-cccCCCChhhHHHHHhhcC
Q psy9120          83 EAL--------------APFQPLAMKSIHC-PIDTSLNFNQANKLIRELK  117 (263)
Q Consensus        83 ~~l--------------~PF~pl~mkv~~~-Pid~rl~~~~~~~Ll~~l~  117 (263)
                      ..+              .=..+++|+|.++ .+..--|..++-..++.++
T Consensus       345 gt~g~~l~~~~~~v~~~g~~~~v~a~v~~~~~~saHad~~~l~~~~~~~~  394 (431)
T 3iek_A          345 GGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEP  394 (431)
T ss_dssp             TSHHHHHHTCCSEEEETTEEEECCSEEEECGGGCSSCCHHHHHHHHTTCS
T ss_pred             CChHHHhhcCCcEEEECCEEEEEEEEEEEECCccccCCHHHHHHHHHhCC
Confidence            322              1112357999999 5999999999999998665


No 2  
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=98.43  E-value=3.5e-07  Score=86.58  Aligned_cols=81  Identities=20%  Similarity=0.344  Sum_probs=70.1

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChhhhc---------------CCCcccceeEEEecccCCC
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYVEAL---------------APFQPLAMKSIHCPIDTSL  104 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~~~l---------------~PF~pl~mkv~~~Pid~rl  104 (263)
                      .+||||+|++..|+.|+++|++++|..||+|+||++  +|.....+               .-..++++++..++++.--
T Consensus       320 ~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~--gy~~~gt~g~~l~~~~~~~~~~~g~~~~~~~~v~~~~~S~Ha  397 (459)
T 2i7t_A          320 IGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIA--GYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHT  397 (459)
T ss_dssp             CSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEEC--SCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCSCCC
T ss_pred             CCCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEE--ecCCCCChHHHHhhCCceeeeeCCcEEEEEEEEEEeeecccC
Confidence            689999999999999999999999999999999995  56554332               1122458999999999999


Q ss_pred             ChhhHHHHHhhcCCCeee
Q psy9120         105 NFNQANKLIRELKPSTLW  122 (263)
Q Consensus       105 ~~~~~~~Ll~~l~P~~li  122 (263)
                      |..++.++++.++|++++
T Consensus       398 d~~~l~~~i~~~~p~~v~  415 (459)
T 2i7t_A          398 DYQQTSEFIRALKPPHVI  415 (459)
T ss_dssp             CHHHHHHHHHHHCCSEEE
T ss_pred             CHHHHHHHHHhcCCCeEE
Confidence            999999999999999988


No 3  
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=97.51  E-value=0.00017  Score=71.89  Aligned_cols=83  Identities=12%  Similarity=0.321  Sum_probs=64.7

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChh------hh---cCC--------CcccceeEEEec-cc
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYV------EA---LAP--------FQPLAMKSIHCP-ID  101 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~------~~---l~P--------F~pl~mkv~~~P-id  101 (263)
                      .+||||+|++..|.-|++.+.|++|..+++|+|||+--..+-.      +.   +.-        -.+..+++..+. +.
T Consensus       502 ~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~g~S  581 (640)
T 2xr1_A          502 PQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVDGFS  581 (640)
T ss_dssp             -CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHTTCCC-----------CCCCCSEEEECCCCS
T ss_pred             CCCeEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHHhhccceeeeeccCCCceEEeeeEEEEEEcccc
Confidence            7899999999999999999999999999999999974333221      00   110        112456777887 88


Q ss_pred             CCCChhhHHHHHhhcC--CCeee
Q psy9120         102 TSLNFNQANKLIRELK--PSTLW  122 (263)
Q Consensus       102 ~rl~~~~~~~Ll~~l~--P~~li  122 (263)
                      .--+..++..+++.++  |++++
T Consensus       582 gHad~~eL~~~i~~~~~~P~~vi  604 (640)
T 2xr1_A          582 GHSDRRQLMEYVKRMQPRPERVF  604 (640)
T ss_dssp             CSCCHHHHHHHHHTCBSCCSEEE
T ss_pred             ccCCHHHHHHHHHHhccCCCEEE
Confidence            8899999999999999  99888


No 4  
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=97.45  E-value=0.00042  Score=69.04  Aligned_cols=83  Identities=14%  Similarity=0.244  Sum_probs=64.7

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChh------hhc------CCCc-----ccceeEEEec-cc
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYV------EAL------APFQ-----PLAMKSIHCP-ID  101 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~------~~l------~PF~-----pl~mkv~~~P-id  101 (263)
                      .+||||+|++..|.-|++++.+++|..+++|+||++--..+-.      +..      ....     +..+++..+. +.
T Consensus       513 ~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~g~S  592 (651)
T 3af5_A          513 NEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTIDGFS  592 (651)
T ss_dssp             CSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHHTCSEEEEECGGGCEEEEECCSEEEECGGGC
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHHHhccceeeehhcCCCceEEEeEEEEEEcCccc
Confidence            7899999999999999999999999999999999963222211      000      0011     1456677777 88


Q ss_pred             CCCChhhHHHHHhhcC--CCeee
Q psy9120         102 TSLNFNQANKLIRELK--PSTLW  122 (263)
Q Consensus       102 ~rl~~~~~~~Ll~~l~--P~~li  122 (263)
                      .--+..++..+++.++  |++++
T Consensus       593 gHad~~eL~~~i~~~~~~P~~vi  615 (651)
T 3af5_A          593 GHADRRELMNYVAKVRPRPERII  615 (651)
T ss_dssp             SSCCHHHHHHHHHHCBSCCSEEE
T ss_pred             CcCCHHHHHHHHHHhhcCCCEEE
Confidence            8899999999999999  99888


No 5  
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.39  E-value=0.00034  Score=69.44  Aligned_cols=83  Identities=12%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCChh------hh------cCCCc-----ccceeEEEec-cc
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFPYV------EA------LAPFQ-----PLAMKSIHCP-ID  101 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~~~------~~------l~PF~-----pl~mkv~~~P-id  101 (263)
                      .+||||+|++..|.-|++.++|++|..+++|+||++....+-.      +.      +..+.     +..+++..++ +.
T Consensus       498 ~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~Gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v~~i~~~S  577 (636)
T 2ycb_A          498 GEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEGFS  577 (636)
T ss_dssp             SSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSSSHHHHHHTTCCEEEEECSSSCEEEEECCSEEEECCSCC
T ss_pred             CCCEEEEecCCccCCChHHHHHHHHhCCCCCEEEEecCCCCCCHHHHhhcCCceeeeeccCCceeEEEeEEEEEEECCcc
Confidence            6899999999999999999999999999999999985544332      01      10111     2456777787 88


Q ss_pred             CCCChhhHHHHHhhcC--CCeee
Q psy9120         102 TSLNFNQANKLIRELK--PSTLW  122 (263)
Q Consensus       102 ~rl~~~~~~~Ll~~l~--P~~li  122 (263)
                      .--+..++..+++.++  |++++
T Consensus       578 gHad~~eL~~~i~~~~~~Pk~vi  600 (636)
T 2ycb_A          578 GHSDRRQLMEYVKRISPKPEKIL  600 (636)
T ss_dssp             SSCCHHHHHHHHHSCSSCCSEEE
T ss_pred             eeCCHHHHHHHHHHhccCCCEEE
Confidence            8899999999999999  99888


No 6  
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=95.51  E-value=0.012  Score=59.55  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=36.3

Q ss_pred             hhccCceEEecCCCcccccchHHHHHHhcCCCCceEEeeCCCCC
Q psy9120          37 AEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLHTIIFTEPDFP   80 (263)
Q Consensus        37 ~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n~iIliep~~~   80 (263)
                      ..+..||||+|++   .-|++.|.|++|+.+|+|+|||+....+
T Consensus       332 ~~~~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~p  372 (717)
T 2i7x_A          332 SKYPGSKICFVSE---VGALINEVIIKVGNSEKTTLILTKPSFE  372 (717)
T ss_dssp             GGCCSCEEEEEES---CHHHHHHHHHHHSSCTTEEEEECSSCCT
T ss_pred             hhCCCCEEEEECC---CCHHHHHHHHHHcCCCcCEEEEEcCCCC
Confidence            4467899999988   6799999999999999999999988773


No 7  
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=49.32  E-value=27  Score=33.74  Aligned_cols=80  Identities=11%  Similarity=0.181  Sum_probs=53.9

Q ss_pred             cCceEEecCCCcccccchHHHHHHhcC--------CCCceEEeeCCCCChhhh-----cCCCcccceeEEE-----eccc
Q psy9120          40 RQPCIVFCGHPSLRFGDSVHFVQLWGS--------NPLHTIIFTEPDFPYVEA-----LAPFQPLAMKSIH-----CPID  101 (263)
Q Consensus        40 ~~PCVvFa~hpSLR~G~avhlle~w~~--------~~~n~iIliep~~~~~~~-----l~PF~pl~mkv~~-----~Pid  101 (263)
                      ..+||+.|+ +|  .|+...-+.+|..        +++|++|++-...+-.+.     ..-.....++++.     +.+.
T Consensus       305 ~~~~vi~~t-g~--~ge~~~~l~ria~~~h~~~~~~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v~~~~~~~i~~S  381 (562)
T 3bk2_A          305 DHQVLILAT-GS--QGQPMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHAS  381 (562)
T ss_dssp             GGGEEEEEC-CT--TSCSHHHHHHHHTTCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECTTTSSSCCC
T ss_pred             CCCEEEEEc-CC--CchhHHHHHhhhhcccccccCCCCCEEEEECCCCCCCeEehhhhcCceeeCCCEEEEccCCceEEe
Confidence            567888887 55  3776667788764        788999988654433221     1111223466654     3455


Q ss_pred             CCCChhhHHHHHhhcCCCeee
Q psy9120         102 TSLNFNQANKLIRELKPSTLW  122 (263)
Q Consensus       102 ~rl~~~~~~~Ll~~l~P~~li  122 (263)
                      .--+..++..+++.++|++++
T Consensus       382 gHa~~~eL~~~i~~~~Pk~vi  402 (562)
T 3bk2_A          382 GHASQEELKLILNLTTPRFFL  402 (562)
T ss_dssp             SSCCHHHHHHHHHHHCCSEEE
T ss_pred             CCCCHHHHHHHHHhcCCCEEE
Confidence            557889999999999999988


No 8  
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=44.71  E-value=20  Score=34.84  Aligned_cols=83  Identities=12%  Similarity=0.188  Sum_probs=58.1

Q ss_pred             hhccCceEEecCCCcccccchHHHHHHhcCCCCc--------eEEeeCCCCChhhhc-----CCCcccceeEEE-----e
Q psy9120          37 AEFRQPCIVFCGHPSLRFGDSVHFVQLWGSNPLH--------TIIFTEPDFPYVEAL-----APFQPLAMKSIH-----C   98 (263)
Q Consensus        37 ~~f~~PCVvFa~hpSLR~G~avhlle~w~~~~~n--------~iIliep~~~~~~~l-----~PF~pl~mkv~~-----~   98 (263)
                      +..++++|+.++-.   -|+..+-|.+|.++++|        +||++-.-.+-.+..     .=.....++|.+     .
T Consensus       287 ~~~~~~~vii~tgs---qGe~~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v~~~~~~~~  363 (555)
T 3zq4_A          287 RMPANKVTILCTGS---QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDI  363 (555)
T ss_dssp             TSCGGGEEEEECCT---TCCTTSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEEECSSSSCC
T ss_pred             hCCCCCEEEEeCCC---CchHHHHHHHHhcCCCCccccCCCCEEEEECCCCCCcHHHHHHHHHHHHHCCCEEEecCCcce
Confidence            33456787766522   68999999999999888        999887765544421     001223467765     4


Q ss_pred             cccCCCChhhHHHHHhhcCCCeee
Q psy9120          99 PIDTSLNFNQANKLIRELKPSTLW  122 (263)
Q Consensus        99 Pid~rl~~~~~~~Ll~~l~P~~li  122 (263)
                      .+..--+-.++..+++.++|++++
T Consensus       364 h~SgHa~~~eL~~~~~~~~Pk~~i  387 (555)
T 3zq4_A          364 HTSGHGGQEEQKLMLRLIKPKFFM  387 (555)
T ss_dssp             CCCSSCCHHHHHHHHHHSCEEEEE
T ss_pred             EEeCCCCHHHHHHHHHHhCCCEEE
Confidence            455557788999999999999877


No 9  
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=14.41  E-value=67  Score=24.39  Aligned_cols=19  Identities=11%  Similarity=0.361  Sum_probs=14.7

Q ss_pred             cchHHHHHHhcCCCCceEE
Q psy9120          55 GDSVHFVQLWGSNPLHTII   73 (263)
Q Consensus        55 G~avhlle~w~~~~~n~iI   73 (263)
                      |..--+||||+.|++=.+-
T Consensus        13 gTlK~mLERWa~ds~m~l~   31 (85)
T 3ov5_A           13 GTLKTMLERWAADSNMQLS   31 (85)
T ss_dssp             CBHHHHHHHHHHTTTCEEE
T ss_pred             hHHHHHHHHHHhhcCCeeE
Confidence            4455699999999986654


No 10 
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=13.97  E-value=99  Score=30.30  Aligned_cols=47  Identities=17%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             eeEEEecccCC---CChhhHHHHHhhcCCCeeecccccCCcccCCCceecccceeecCCCCchhHHHHhh
Q psy9120          93 MKSIHCPIDTS---LNFNQANKLIRELKPSTLWSRRYLPRWCSGQGATYLGGVVVKALPPRPMDQQALKN  159 (263)
Q Consensus        93 mkv~~~Pid~r---l~~~~~~~Ll~~l~P~~li~~~~~P~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~  159 (263)
                      .++...++|..   ||..++.++..+.+||.+|                .++|+    -||+.|++.++.
T Consensus       176 ~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi----------------~G~Sa----Y~r~id~~~~re  225 (490)
T 3ou5_A          176 FESMPYKLNPKTGLIDYNQLALTARLFRPRLII----------------AGTSA----YARLIDYARMRE  225 (490)
T ss_dssp             ----CBCEETTTTEECHHHHHHHHHHHCCSEEE----------------ECCSS----CCSCCCHHHHHH
T ss_pred             ccccccccCCCCCcccHHHHHHHHhhcCCCeEE----------------ECCcc----CccccCHHHHHH
Confidence            46677777744   9999999999999999999                23333    367788887764


Done!